Carg18030 (gene) Silver-seed gourd

Overview
NameCarg18030
Typegene
OrganismCucurbita argyrosperma (Silver-seed gourd)
Descriptionprotochlorophyllide-dependent translocon component 52, chloroplastic-like
LocationCucurbita_argyrosperma_scaffold_171 : 491028 .. 493488 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAATTTACAGAGAAAGCAGATAGAGAAGGAGGCAAACCAATTGAAATATTTATAAAAGACTTGGATGCGTATGGTTTCATCTCTAATCAGGAACTGGGAAATAGTCAATTTTTTGCACCTTGTGTATTTTACACTTCTTTTAGTTTAAGGTCTAAGAAAAGAACTCCAAAACACCAAGACAACGGAGCTCTCTTATCAGCTGAAAACAACGCGGTAAGAAATCTAGAAACTTCCTTTACACACGTTTTTGGGTGATGAATTTTTTTTTATCTTTATTATTATATAGTCTCTCTCATCTGTGCATATTTCTACGATACATATTTCTCTTCGCTCGACGGTTAGGGTTATATATTTATTCTCTTCTTCTTGTGTAAGTTGATATAGCAGCACCAGCTTCCCGAATCACATCACAGAGTAAAAGCAATTGCTAGTATCTTCATTAGAGTGATCCCCGTTAAGTCCACATATAGTAGCTCACGCAAAGATTAATGTATTTTACTATTCTAATCGCTAAGCAAATTGGTGCATACTATAGCAGTTTACATGATCGAATTATCCATAGGAAGATGGGTCTTCCACGTGGTACATAAACCTATCTTTATATTGTCTGATTTGGTGTATCCTATTCTTCTAAGTATTACAACTCATATCGACAACACATTCTTGATTATTTGGTTTAAATTGAAGTTTATGATCAAAACAATAATACTTATTACAATGTTGTTGGTATTAGATAACTCAATCTCTCTATATACTCATTATAGTTATTTGTATAAAAAAATTCTACTACTCTATCGGTTGTGATAATGACTATATAAGCAATCAATTCATAATTCTCAGCACATGACACATATCTTAGCACATTTTATAGTATGAATGGTGTAACATTAGCTTGATAACTTGAAAAGAAATACAGTATGTTATGAATGAGCCCTTGATTGTTTCATTTTATTTTTATGATTTTCTCCATCTTTTTATATCTGTTTTCCATTAGAAAGATCTCTTCTCTGGGATGAATGTTTCACTTGTTCTTGAACAGCATCTTATGAGCCCTGCTTGTTAAGCCTCAGAAAAAGAAAAAAAAAAAAAAAAGGTTTAATGAATTCATATTAATCCTATGATTATTTTGAGTACATTTTTACAGGAGAGGAAGATATTGGATGTGGGTCCTTCAAATTGGCAGAAAGCTTGTTTTGTGCCAACCAAATCAGACGCCAAAGTGGTTGCTTTCAGAAGGTGGTTGAACAAATATTCAGATGGCCATGTTGACTGGAGAGGCAAGTTCAGTGGCATTCTTCCTCCATCGCCTCCAAAGGAACAGCTGATGGACAGGTAACTCTTTAGCTCGCTTCGGTACGTTAAATGCTTATAATACCATACAAGTTTCTTATTTTCAAATGTGTTCGTCTCGTGGATTTAGTCGAAATGCTTAAGTTAAGACTCTAAAATCGAACTTATATTCATTGCTATTGGGTCTTTGGAGACATTAAGACATCTTTGAATCTGGTGCATTTCAAGGGCTGTTTAGGTTATTTTGAGAACTATCTTGCCTTTTTTAATTACAACAAGTACTCAGTAAAACAAATGTTTGGATAATTTCTTTGTTTTTCTTGCTTTTTGATTGCTTATTTTCACAGATAATCTACCATTTCGAAGGATCGAATATTTTCTAACACACCTTTCGTATTGTATTACCCTCTCAACCACTTGAATAAATGGTAATAACTCTCTAAATAAACTGAAAACAATCAGTTTCTAGAGAGAACTAAATTCATGAAACTAATCCTTGGCTACACATCGATAACATTTAGGTTTGTGTATTATCGATGAAGATTTCTTTGTTTTGTTATCTACTTTCTAAAAACGTTTTCAAAATCCAACTAGTTTTATGAACTTATTTTTGTTTTTGAAATTTAGCTTATAATTTAAACGTGCACAGATCATTTCATCTCCACCAAGTTTCCTTCCTGTCGTATTTTTGCACATGGTTGTACATTTTATTTTTCATGTTCATCGACATCGATATTTTCATACCCGAAAATACTGAAAGTCGAGAGTGGGCGAACGGTTTCAGGTACTGGTCTCATGTGGTGAACTGCAGCAGCTGTAATGGGGCATACAAGGGTTTAAATGCACTAGAAGTGGTGTTGCAGGTCATCTCCATTGCTTTGCTTGGAGTTTTTGCAGCAACAAACCAGAGTTTGGTATCACGAACTGCTAGAATTGTGATGGTAGCAATGGCTGTACTCTGCTTTGCTGCTTCAAGGTGGCTTTCTCATTTCATTTACAAGAACTTTCACTTCCACGATTACAATCATGCCCTTAGGTGAAATTACCATCCTGCCCCTTTTTAAAATGGTTTATGTATTTATGATACACACAAATAGTGTATAGAAAAGAAGCCTATTTATTTATGTATTTATGAAAGAAACTATATTCATATCAATAATGTCTTTTT

mRNA sequence

ATGGAATTTACAGAGAAAGCAGATAGAGAAGGAGGCAAACCAATTGAAATATTTATAAAAGACTTGGATGCGTATGGTTTCATCTCTAATCAGGAACTGGGAAATAGTCAATTTTTTGCACCTTGTGTATTTTACACTTCTTTTAGTTTAAGGTCTAAGAAAAGAACTCCAAAACACCAAGACAACGGAGCTCTCTTATCAGCTGAAAACAACGCGCACCAGCTTCCCGAATCACATCACAGAGTAAAAGCAATTGCTAGTATCTTCATTAGAGTGATCCCCGTTAAGTCCACATATATTTACATGATCGAATTATCCATAGGAAGATGGGTCTTCCACGTGGAGAGGAAGATATTGGATGTGGGTCCTTCAAATTGGCAGAAAGCTTGTTTTGTGCCAACCAAATCAGACGCCAAAGTGGTTGCTTTCAGAAGGTGGTTGAACAAATATTCAGATGGCCATGTTGACTGGAGAGGCAAGTTCAGTGGCATTCTTCCTCCATCGCCTCCAAAGGAACAGCTGATGGACAGGTACTGGTCTCATGTGGTGAACTGCAGCAGCTGTAATGGGGCATACAAGGGTTTAAATGCACTAGAAGTGGTGTTGCAGGTCATCTCCATTGCTTTGCTTGGAGTTTTTGCAGCAACAAACCAGAGTTTGGTATCACGAACTGCTAGAATTGTGATGGTAGCAATGGCTGTACTCTGCTTTGCTGCTTCAAGGTGGCTTTCTCATTTCATTTACAAGAACTTTCACTTCCACGATTACAATCATGCCCTTAGGTGAAATTACCATCCTGCCCCTTTTTAAAATGGTTTATGTATTTATGATACACACAAATAGTGTATAGAAAAGAAGCCTATTTATTTATGTATTTATGAAAGAAACTATATTCATATCAATAATGTCTTTTT

Coding sequence (CDS)

ATGGAATTTACAGAGAAAGCAGATAGAGAAGGAGGCAAACCAATTGAAATATTTATAAAAGACTTGGATGCGTATGGTTTCATCTCTAATCAGGAACTGGGAAATAGTCAATTTTTTGCACCTTGTGTATTTTACACTTCTTTTAGTTTAAGGTCTAAGAAAAGAACTCCAAAACACCAAGACAACGGAGCTCTCTTATCAGCTGAAAACAACGCGCACCAGCTTCCCGAATCACATCACAGAGTAAAAGCAATTGCTAGTATCTTCATTAGAGTGATCCCCGTTAAGTCCACATATATTTACATGATCGAATTATCCATAGGAAGATGGGTCTTCCACGTGGAGAGGAAGATATTGGATGTGGGTCCTTCAAATTGGCAGAAAGCTTGTTTTGTGCCAACCAAATCAGACGCCAAAGTGGTTGCTTTCAGAAGGTGGTTGAACAAATATTCAGATGGCCATGTTGACTGGAGAGGCAAGTTCAGTGGCATTCTTCCTCCATCGCCTCCAAAGGAACAGCTGATGGACAGGTACTGGTCTCATGTGGTGAACTGCAGCAGCTGTAATGGGGCATACAAGGGTTTAAATGCACTAGAAGTGGTGTTGCAGGTCATCTCCATTGCTTTGCTTGGAGTTTTTGCAGCAACAAACCAGAGTTTGGTATCACGAACTGCTAGAATTGTGATGGTAGCAATGGCTGTACTCTGCTTTGCTGCTTCAAGGTGGCTTTCTCATTTCATTTACAAGAACTTTCACTTCCACGATTACAATCATGCCCTTAGGTGA

Protein sequence

MEFTEKADREGGKPIEIFIKDLDAYGFISNQELGNSQFFAPCVFYTSFSLRSKKRTPKHQDNGALLSAENNAHQLPESHHRVKAIASIFIRVIPVKSTYIYMIELSIGRWVFHVERKILDVGPSNWQKACFVPTKSDAKVVAFRRWLNKYSDGHVDWRGKFSGILPPSPPKEQLMDRYWSHVVNCSSCNGAYKGLNALEVVLQVISIALLGVFAATNQSLVSRTARIVMVAMAVLCFAASRWLSHFIYKNFHFHDYNHALR
Homology
[Close]
BLAST of Carg18030 vs. NCBI nr
Match: XP_022933573.1 (protochlorophyllide-dependent translocon component 52, chloroplastic [Cucurbita moschata])

HSP 1 Score: 448.0 bits (1151), Expect = 2.2e-122
Identity = 230/281 (81.85%), Postives = 238/281 (84.70%), Query Frame = 0 

Query: 5   EKADREGGKPIEIFIKDLDAYGFISNQELGNSQFFAPCVFYTSFSLRSKKRTPKHQDNGA 64
           EKADREGGKPIEIFIKDLDAYGFISNQELGNSQFFAPCVFYTSFSLRSKKRTPKHQDNGA
Sbjct: 269 EKADREGGKPIEIFIKDLDAYGFISNQELGNSQFFAPCVFYTSFSLRSKKRTPKHQDNGA 328

Query: 65  LLSAENNAHQLPESHHRVKAIASIFIRVIPVKSTYIYM--------IELSIGRWVFHV-- 124
           LLSAENNA + P +  R   +  + I V P +S  I++        I+  I RWVFHV  
Sbjct: 329 LLSAENNA-EAPNTSQRKAMLVFMCIPVSPGRSRLIFVSLRNFAIGIDRIIPRWVFHVGQ 388

Query: 125 --------------ERKILDVGPSNWQKACFVPTKSDAKVVAFRRWLNKYSDGHVDWRGK 184
                         ERKILDVGPSNWQKACFVPTKSDAKVVAFRRWLNKYSDGHVDWRGK
Sbjct: 389 NLILDSDLYLLHVEERKILDVGPSNWQKACFVPTKSDAKVVAFRRWLNKYSDGHVDWRGK 448

Query: 185 FSGILPPSPPKEQLMDRYWSHVVNCSSCNGAYKGLNALEVVLQVISIALLGVFAATNQSL 244
           FSGILPPSPPKEQLMDRYWSHVVNCSSCNGAYKGLNALEVVLQVISIALLGVFAATNQSL
Sbjct: 449 FSGILPPSPPKEQLMDRYWSHVVNCSSCNGAYKGLNALEVVLQVISIALLGVFAATNQSL 508

Query: 245 VSRTARIVMVAMAVLCFAASRWLSHFIYKNFHFHDYNHALR 262
           VSRTARIVMVAMAVLCFAASRWLSHFIYKNFHFHDYNHALR
Sbjct: 509 VSRTARIVMVAMAVLCFAASRWLSHFIYKNFHFHDYNHALR 548

[Close]
BLAST of Carg18030 vs. NCBI nr
Match: XP_022967161.1 (protochlorophyllide-dependent translocon component 52, chloroplastic [Cucurbita maxima])

HSP 1 Score: 444.1 bits (1141), Expect = 3.2e-121
Identity = 227/281 (80.78%), Postives = 237/281 (84.34%), Query Frame = 0 

Query: 5   EKADREGGKPIEIFIKDLDAYGFISNQELGNSQFFAPCVFYTSFSLRSKKRTPKHQDNGA 64
           EKADREGGKPIEIF+KDLDAYGFISNQELGNSQFFAPCVFYTSFSLRSKKRTPKHQDNGA
Sbjct: 269 EKADREGGKPIEIFVKDLDAYGFISNQELGNSQFFAPCVFYTSFSLRSKKRTPKHQDNGA 328

Query: 65  LLSAENNAHQLPESHHRVKAIASIFIRVIPVKSTYIYM--------IELSIGRWVFHV-- 124
           LLSAENNA + P +  R   +  + I V P +S  I++        I+  I RWVFHV  
Sbjct: 329 LLSAENNA-EAPNTSQRKAMLVFMCIPVSPGRSRLIFVSLRNFAIGIDRIIPRWVFHVGQ 388

Query: 125 --------------ERKILDVGPSNWQKACFVPTKSDAKVVAFRRWLNKYSDGHVDWRGK 184
                         ERKILDVGPSNWQKACFVPTKSDAKVVAFRRWLNKYSDGHVDWRGK
Sbjct: 389 NLILDSDLYLLHLEERKILDVGPSNWQKACFVPTKSDAKVVAFRRWLNKYSDGHVDWRGK 448

Query: 185 FSGILPPSPPKEQLMDRYWSHVVNCSSCNGAYKGLNALEVVLQVISIALLGVFAATNQSL 244
           FSGILPPSPPKEQLMDRYWSHVVNCSSCNGAYKGLNALEVVLQVISIALLGVFAATNQSL
Sbjct: 449 FSGILPPSPPKEQLMDRYWSHVVNCSSCNGAYKGLNALEVVLQVISIALLGVFAATNQSL 508

Query: 245 VSRTARIVMVAMAVLCFAASRWLSHFIYKNFHFHDYNHALR 262
           VS TARIVMVAMAVLCFAASRWLSHFIYKNFHFHDYNHA+R
Sbjct: 509 VSGTARIVMVAMAVLCFAASRWLSHFIYKNFHFHDYNHAIR 548

[Close]
BLAST of Carg18030 vs. NCBI nr
Match: XP_023531366.1 (protochlorophyllide-dependent translocon component 52, chloroplastic [Cucurbita pepo subsp. pepo])

HSP 1 Score: 442.6 bits (1137), Expect = 9.4e-121
Identity = 227/281 (80.78%), Postives = 236/281 (83.99%), Query Frame = 0 

Query: 5   EKADREGGKPIEIFIKDLDAYGFISNQELGNSQFFAPCVFYTSFSLRSKKRTPKHQDNGA 64
           EKADREGGKPIEIFIKDLDAYGFISNQELGNSQFFAPCVFYTSFSLRSKKRTPKHQDNGA
Sbjct: 269 EKADREGGKPIEIFIKDLDAYGFISNQELGNSQFFAPCVFYTSFSLRSKKRTPKHQDNGA 328

Query: 65  LLSAENNAHQLPESHHRVKAIASIFIRVIPVKSTYIYM--------IELSIGRWVFHV-- 124
           LLSAENNA + P +  R   +  + I V P +S  I++        I+  I RWVFHV  
Sbjct: 329 LLSAENNA-EAPNTSQRKAMLVFMCIPVSPGRSRLIFVSLRNFAIGIDRIIPRWVFHVGQ 388

Query: 125 --------------ERKILDVGPSNWQKACFVPTKSDAKVVAFRRWLNKYSDGHVDWRGK 184
                         ERKILDVGPSNWQKACFVPTKSDAKVVAFRRWLNKYSDGHVDWRGK
Sbjct: 389 NLILDSDLYLLHVEERKILDVGPSNWQKACFVPTKSDAKVVAFRRWLNKYSDGHVDWRGK 448

Query: 185 FSGILPPSPPKEQLMDRYWSHVVNCSSCNGAYKGLNALEVVLQVISIALLGVFAATNQSL 244
           FSGILPPSPPKEQLMDRYWSHVVNCSSCNGAYKGLN LEVVLQVISIALLGVFAATNQSL
Sbjct: 449 FSGILPPSPPKEQLMDRYWSHVVNCSSCNGAYKGLNTLEVVLQVISIALLGVFAATNQSL 508

Query: 245 VSRTARIVMVAMAVLCFAASRWLSHFIYKNFHFHDYNHALR 262
           VS TARIVMVAMAVLCFAAS+WLSHFIYKNFHFHDYNHALR
Sbjct: 509 VSGTARIVMVAMAVLCFAASKWLSHFIYKNFHFHDYNHALR 548

[Close]
BLAST of Carg18030 vs. NCBI nr
Match: XP_008451029.1 (PREDICTED: protochlorophyllide-dependent translocon component 52, chloroplastic-like [Cucumis melo])

HSP 1 Score: 384.8 bits (987), Expect = 2.3e-103
Identity = 197/281 (70.11%), Postives = 219/281 (77.94%), Query Frame = 0 

Query: 5   EKADREGGKPIEIFIKDLDAYGFISNQELGNSQFFAPCVFYTSFSLRSKKRTPKHQDNGA 64
           EKADREGGKPI+I ++DL+  GFISNQ+LG+SQFFAPCVF+TSFSL SKK     QD+GA
Sbjct: 266 EKADREGGKPIDIVVRDLNINGFISNQDLGSSQFFAPCVFFTSFSLPSKKTNSNRQDSGA 325

Query: 65  LLSAENNAHQLPESHHRVKAIASIFIRVIPVKSTYIYM--------IELSIGRWVFHV-- 124
           LLS ENNA   P +  R   +  + I V P KS  I++        I+  I RW+FHV  
Sbjct: 326 LLSGENNA-VAPNTSQRKAMLIFMCIPVGPGKSRLIFVSLRNFAVSIDRIIPRWIFHVGQ 385

Query: 125 --------------ERKILDVGPSNWQKACFVPTKSDAKVVAFRRWLNKYSDGHVDWRGK 184
                         ERKILDVGPSNWQKACFVPTKSDAKVVAFRRWLN+YSDG VDWRGK
Sbjct: 386 NLILDSDLYLLHIEERKILDVGPSNWQKACFVPTKSDAKVVAFRRWLNRYSDGQVDWRGK 445

Query: 185 FSGILPPSPPKEQLMDRYWSHVVNCSSCNGAYKGLNALEVVLQVISIALLGVFAATNQSL 244
           F+GI PPSPPKEQLMDRYWSHVVNCSSC  AYKGLNALEVVLQVISIA LG+FAAT QSL
Sbjct: 446 FNGIFPPSPPKEQLMDRYWSHVVNCSSCKVAYKGLNALEVVLQVISIASLGIFAATKQSL 505

Query: 245 VSRTARIVMVAMAVLCFAASRWLSHFIYKNFHFHDYNHALR 262
           VS  AR++MVAMA+LCFA+SRWLSHFIYKNFHFHDYNHALR
Sbjct: 506 VSGAARVLMVAMAILCFASSRWLSHFIYKNFHFHDYNHALR 545

[Close]
BLAST of Carg18030 vs. NCBI nr
Match: XP_022147615.1 (protochlorophyllide-dependent translocon component 52, chloroplastic-like [Momordica charantia])

HSP 1 Score: 376.3 bits (965), Expect = 8.3e-101
Identity = 195/284 (68.66%), Postives = 219/284 (77.11%), Query Frame = 0 

Query: 4   TEKADREGGKPIEIFIKDLDAYGFISNQELGNSQFFAPCVFYTSFSLR--SKKRTPKHQD 63
           +EKADREGGKPIEI ++DLD YGFISNQ LG+S+FFAPC++Y+SFSL   SK++ PK QD
Sbjct: 271 SEKADREGGKPIEIVVRDLDIYGFISNQTLGSSKFFAPCLYYSSFSLGPISKEKNPKLQD 330

Query: 64  NGALLSAENNAHQLPESHHRVKAIASIFIRVIPVKSTYIYM--------IELSIGRWVFH 123
           NG LLSAENN    P +  +   +  + I V P KS  I++        ++  I RW+FH
Sbjct: 331 NGTLLSAENNT-VTPNTSQKKGMLIFMCIPVSPGKSRVIFVFPRNFAVWMDRIIPRWMFH 390

Query: 124 V----------------ERKILDVGPSNWQKACFVPTKSDAKVVAFRRWLNKYSDGHVDW 183
           V                ERKILD+GP NWQKACFVPTKSDA VVAFRRWLNKYSDGHVDW
Sbjct: 391 VGQNLILDSDLYLLHVEERKILDIGPLNWQKACFVPTKSDAIVVAFRRWLNKYSDGHVDW 450

Query: 184 RGKFSGILPPSPPKEQLMDRYWSHVVNCSSCNGAYKGLNALEVVLQVISIALLGVFAATN 243
           RGKFSG LPPSPPKEQLMDRYWSHVVNCSSC  A KGLNALEVVLQVISIA LG+FA+T 
Sbjct: 451 RGKFSGSLPPSPPKEQLMDRYWSHVVNCSSCRVACKGLNALEVVLQVISIASLGIFASTK 510

Query: 244 QSLVSRTARIVMVAMAVLCFAASRWLSHFIYKNFHFHDYNHALR 262
           QSLVS  AR VMVAMA+LCFAASRWLSH+IYKNFHFHDYNHALR
Sbjct: 511 QSLVSAAARNVMVAMAILCFAASRWLSHYIYKNFHFHDYNHALR 553

[Close]
BLAST of Carg18030 vs. TAIR10
Match: AT4G25650.2 (ACD1-like)

HSP 1 Score: 208.0 bits (528), Expect = 7.1e-54
Identity = 124/285 (43.51%), Postives = 145/285 (50.88%), Query Frame = 0 

Query: 5   EKADREGGKPIEIFIKDLDAYGFISNQELGNSQFFAPCVFYTSFSLRSKKR----TPKHQ 64
           EK DREGGKP+EI +K LD  GF S QE G S F APCV+ +S     ++      P   
Sbjct: 287 EKIDREGGKPLEINVKKLDNKGFFSKQEWGYSNFIAPCVYRSSTDPLPEQEHEYPAPAAS 346

Query: 65  DNGALLSAENNAHQLPESHHRVKAIASIFIRVIPVKSTYIY--------MIELSIGRWVF 124
           D  AL            S  R+  I  I I V P +S  I+         I+  + RWVF
Sbjct: 347 DKAAL------------SKRRLSLI-FICIPVSPGRSRLIWTFPRNFGVFIDKIVPRWVF 406

Query: 125 HV----------------ERKILDVGPSNWQKACFVPTKSDAKVVAFRRWLNKYSDGHVD 184
           H+                ERKIL+ GP NWQKACF+PTKSDA VV FRRW NKYS+  VD
Sbjct: 407 HIGQNTILDSDLHLLHVEERKILERGPENWQKACFIPTKSDANVVTFRRWFNKYSEARVD 466

Query: 185 WRGKFSG-ILPPSPPKEQLMDRYWSHVVNCSSCNGAYKGLNALEVVLQVISIALLGVFAA 244
           WRGKF   +LPP+PP+EQL DRYWSHV NCS                             
Sbjct: 467 WRGKFDPFLLPPTPPREQLFDRYWSHVENCSXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 526

Query: 245 TNQSLVSRTARIVMVAMAVLCFAASRWLSHFIYKNFHFHDYNHAL 261
                            AVL FAAS+WLSHFIYK FH+HDYNHA+
Sbjct: 527 XXXXXXXXXXXXXXXVAAVLSFAASKWLSHFIYKTFHYHDYNHAV 558

[Close]
BLAST of Carg18030 vs. TAIR10
Match: AT3G44880.1 (Pheophorbide a oxygenase family protein with Rieske [2Fe-2S] domain)

HSP 1 Score: 68.6 bits (166), Expect = 6.7e-12
Identity = 48/139 (34.53%), Postives = 67/139 (48.20%), Query Frame = 0 

Query: 126 WQKACFVPTKSDAKVVAFRRWLNKYSDGHVDWRGKFSGILP-PSP--PKEQLMDRYWSHV 185
           + K  F PT++D  V+AFR WL ++     +W G      P PS    K Q++DR+  H 
Sbjct: 403 YTKLTFTPTQADRFVLAFRNWLRRHGKSQPEWFGSTPSNQPLPSTVLTKRQMLDRFDQHT 462

Query: 186 VNCSSCNGAYKGLNALEVVLQVISIALLG--VFAATNQSLVSRTARIVMVAMAVLCFAAS 245
             CSSC GAY          Q++   L+G  VF A    + S     +++A   L  AAS
Sbjct: 463 QVCSSCKGAYNS-------FQILKKFLVGATVFWAATAGVPSDVQIRLVLAGLSLISAAS 522

Query: 246 RWLSHFIYKNFHFHDYNHA 260
            +  H   KNF F DY H+
Sbjct: 523 AYALHEQEKNFVFRDYVHS 534

[Close]
BLAST of Carg18030 vs. Swiss-Prot
Match: sp|Q8W496|PTC52_ARATH (Protochlorophyllide-dependent translocon component 52, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PTC52 PE=2 SV=1)

HSP 1 Score: 208.0 bits (528), Expect = 1.3e-52
Identity = 124/285 (43.51%), Postives = 145/285 (50.88%), Query Frame = 0 

Query: 5   EKADREGGKPIEIFIKDLDAYGFISNQELGNSQFFAPCVFYTSFSLRSKKR----TPKHQ 64
           EK DREGGKP+EI +K LD  GF S QE G S F APCV+ +S     ++      P   
Sbjct: 287 EKIDREGGKPLEINVKKLDNKGFFSKQEWGYSNFIAPCVYRSSTDPLPEQEHEYPAPAAS 346

Query: 65  DNGALLSAENNAHQLPESHHRVKAIASIFIRVIPVKSTYIY--------MIELSIGRWVF 124
           D  AL            S  R+  I  I I V P +S  I+         I+  + RWVF
Sbjct: 347 DKAAL------------SKRRLSLI-FICIPVSPGRSRLIWTFPRNFGVFIDKIVPRWVF 406

Query: 125 HV----------------ERKILDVGPSNWQKACFVPTKSDAKVVAFRRWLNKYSDGHVD 184
           H+                ERKIL+ GP NWQKACF+PTKSDA VV FRRW NKYS+  VD
Sbjct: 407 HIGQNTILDSDLHLLHVEERKILERGPENWQKACFIPTKSDANVVTFRRWFNKYSEARVD 466

Query: 185 WRGKFSG-ILPPSPPKEQLMDRYWSHVVNCSSCNGAYKGLNALEVVLQVISIALLGVFAA 244
           WRGKF   +LPP+PP+EQL DRYWSHV NCS                             
Sbjct: 467 WRGKFDPFLLPPTPPREQLFDRYWSHVENCSXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 526

Query: 245 TNQSLVSRTARIVMVAMAVLCFAASRWLSHFIYKNFHFHDYNHAL 261
                            AVL FAAS+WLSHFIYK FH+HDYNHA+
Sbjct: 527 XXXXXXXXXXXXXXXVAAVLSFAASKWLSHFIYKTFHYHDYNHAV 558

[Close]
BLAST of Carg18030 vs. Swiss-Prot
Match: sp|Q9FYC2|PAO_ARATH (Pheophorbide a oxygenase, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PAO PE=1 SV=1)

HSP 1 Score: 68.6 bits (166), Expect = 1.2e-10
Identity = 48/139 (34.53%), Postives = 67/139 (48.20%), Query Frame = 0 

Query: 126 WQKACFVPTKSDAKVVAFRRWLNKYSDGHVDWRGKFSGILP-PSP--PKEQLMDRYWSHV 185
           + K  F PT++D  V+AFR WL ++     +W G      P PS    K Q++DR+  H 
Sbjct: 403 YTKLTFTPTQADRFVLAFRNWLRRHGKSQPEWFGSTPSNQPLPSTVLTKRQMLDRFDQHT 462

Query: 186 VNCSSCNGAYKGLNALEVVLQVISIALLG--VFAATNQSLVSRTARIVMVAMAVLCFAAS 245
             CSSC GAY          Q++   L+G  VF A    + S     +++A   L  AAS
Sbjct: 463 QVCSSCKGAYNS-------FQILKKFLVGATVFWAATAGVPSDVQIRLVLAGLSLISAAS 522

Query: 246 RWLSHFIYKNFHFHDYNHA 260
            +  H   KNF F DY H+
Sbjct: 523 AYALHEQEKNFVFRDYVHS 534

[Close]
BLAST of Carg18030 vs. TrEMBL
Match: tr|A0A1S3BQM5|A0A1S3BQM5_CUCME (protochlorophyllide-dependent translocon component 52, chloroplastic-like OS=Cucumis melo OX=3656 GN=LOC103492435 PE=4 SV=1)

HSP 1 Score: 384.8 bits (987), Expect = 1.5e-103
Identity = 197/281 (70.11%), Postives = 219/281 (77.94%), Query Frame = 0 

Query: 5   EKADREGGKPIEIFIKDLDAYGFISNQELGNSQFFAPCVFYTSFSLRSKKRTPKHQDNGA 64
           EKADREGGKPI+I ++DL+  GFISNQ+LG+SQFFAPCVF+TSFSL SKK     QD+GA
Sbjct: 266 EKADREGGKPIDIVVRDLNINGFISNQDLGSSQFFAPCVFFTSFSLPSKKTNSNRQDSGA 325

Query: 65  LLSAENNAHQLPESHHRVKAIASIFIRVIPVKSTYIYM--------IELSIGRWVFHV-- 124
           LLS ENNA   P +  R   +  + I V P KS  I++        I+  I RW+FHV  
Sbjct: 326 LLSGENNA-VAPNTSQRKAMLIFMCIPVGPGKSRLIFVSLRNFAVSIDRIIPRWIFHVGQ 385

Query: 125 --------------ERKILDVGPSNWQKACFVPTKSDAKVVAFRRWLNKYSDGHVDWRGK 184
                         ERKILDVGPSNWQKACFVPTKSDAKVVAFRRWLN+YSDG VDWRGK
Sbjct: 386 NLILDSDLYLLHIEERKILDVGPSNWQKACFVPTKSDAKVVAFRRWLNRYSDGQVDWRGK 445

Query: 185 FSGILPPSPPKEQLMDRYWSHVVNCSSCNGAYKGLNALEVVLQVISIALLGVFAATNQSL 244
           F+GI PPSPPKEQLMDRYWSHVVNCSSC  AYKGLNALEVVLQVISIA LG+FAAT QSL
Sbjct: 446 FNGIFPPSPPKEQLMDRYWSHVVNCSSCKVAYKGLNALEVVLQVISIASLGIFAATKQSL 505

Query: 245 VSRTARIVMVAMAVLCFAASRWLSHFIYKNFHFHDYNHALR 262
           VS  AR++MVAMA+LCFA+SRWLSHFIYKNFHFHDYNHALR
Sbjct: 506 VSGAARVLMVAMAILCFASSRWLSHFIYKNFHFHDYNHALR 545

[Close]
BLAST of Carg18030 vs. TrEMBL
Match: tr|A0A1S3BQK3|A0A1S3BQK3_CUCME (protochlorophyllide-dependent translocon component 52, chloroplastic-like OS=Cucumis melo OX=3656 GN=LOC103492436 PE=4 SV=1)

HSP 1 Score: 372.1 bits (954), Expect = 1.0e-99
Identity = 189/281 (67.26%), Postives = 216/281 (76.87%), Query Frame = 0 

Query: 5   EKADREGGKPIEIFIKDLDAYGFISNQELGNSQFFAPCVFYTSFSLRSKKRTPKHQDNGA 64
           +KADREGG+PIEI ++DLD +GFISNQ LG+S+F APCV YTSF+L SK+R  KHQDNG 
Sbjct: 263 KKADREGGQPIEIVVRDLDVHGFISNQGLGHSKFVAPCVLYTSFNLPSKERNAKHQDNGT 322

Query: 65  LLSAENNAHQLPESHHRVKAIASIFIRVIPVKSTYIYM--------IELSIGRWVFHV-- 124
           L   ENNA     S  +  A+  + I + P KS  I++        +   I RW+FH+  
Sbjct: 323 LSLGENNAVASKTSQRKRMAV-FMCIPISPGKSRVIFIPLRNFAIWVNQIIPRWMFHLGQ 382

Query: 125 --------------ERKILDVGPSNWQKACFVPTKSDAKVVAFRRWLNKYSDGHVDWRGK 184
                         ERKILDVG +NWQKACF+PTKSDAKVVAFRRWLNKYSDGHV WRGK
Sbjct: 383 NLVLDSDSYLLHLEERKILDVGTANWQKACFLPTKSDAKVVAFRRWLNKYSDGHVGWRGK 442

Query: 185 FSGILPPSPPKEQLMDRYWSHVVNCSSCNGAYKGLNALEVVLQVISIALLGVFAATNQSL 244
           FSGILPPSPPKEQLM+RYWSHVVNCSSC  AYKGLNALEVVLQVISIA LG+FAAT QSL
Sbjct: 443 FSGILPPSPPKEQLMERYWSHVVNCSSCKVAYKGLNALEVVLQVISIASLGIFAATKQSL 502

Query: 245 VSRTARIVMVAMAVLCFAASRWLSHFIYKNFHFHDYNHALR 262
           VS  AR++MVAMA+LCFA+SRWLSHFIYKNFHFHDYNHA+R
Sbjct: 503 VSGAARVLMVAMAILCFASSRWLSHFIYKNFHFHDYNHAIR 542

[Close]
BLAST of Carg18030 vs. TrEMBL
Match: tr|A0A0A0LX68|A0A0A0LX68_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G600130 PE=4 SV=1)

HSP 1 Score: 361.3 bits (926), Expect = 1.8e-96
Identity = 182/281 (64.77%), Postives = 212/281 (75.44%), Query Frame = 0 

Query: 5   EKADREGGKPIEIFIKDLDAYGFISNQELGNSQFFAPCVFYTSFSLRSKKRTPKHQDNGA 64
           +KAD EGG+PI+I ++DLD +GFISNQ LG+ +F APCV YTS +L SK+R  KHQDNG 
Sbjct: 259 KKADEEGGQPIDIVVRDLDVHGFISNQGLGHGKFVAPCVTYTSLNLPSKERNAKHQDNGT 318

Query: 65  LLSAENNAHQLPESHHRVKAIASIFIRVIPVKSTYIYM--------IELSIGRWVFHV-- 124
               ENN    P++  R   +  + I + P KS  I++        +   I RW+FH+  
Sbjct: 319 PSLDENNT-VAPKTSQRKTMVVFMCIPISPGKSRVIFIPLRNFAVWVNRIIPRWMFHLGQ 378

Query: 125 --------------ERKILDVGPSNWQKACFVPTKSDAKVVAFRRWLNKYSDGHVDWRGK 184
                         ERKILD G +NWQKACF+PTKSDAKVVAFRRWLNKYSDGHVDWRGK
Sbjct: 379 NLVMDSDSYLLHVEERKILDAGLANWQKACFLPTKSDAKVVAFRRWLNKYSDGHVDWRGK 438

Query: 185 FSGILPPSPPKEQLMDRYWSHVVNCSSCNGAYKGLNALEVVLQVISIALLGVFAATNQSL 244
           FSGILPPSPPKEQLM+RYWSHVVNCSSC  AYKGLNALEVVLQVISIA LG+FAAT QSL
Sbjct: 439 FSGILPPSPPKEQLMERYWSHVVNCSSCKVAYKGLNALEVVLQVISIASLGIFAATKQSL 498

Query: 245 VSRTARIVMVAMAVLCFAASRWLSHFIYKNFHFHDYNHALR 262
           VS  AR++MVAMA+LCFA+SRWLSHFIYK+FHFHDYNHA+R
Sbjct: 499 VSGAARVLMVAMAILCFASSRWLSHFIYKSFHFHDYNHAIR 538

[Close]
BLAST of Carg18030 vs. TrEMBL
Match: tr|A0A0A0LWW6|A0A0A0LWW6_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G600150 PE=4 SV=1)

HSP 1 Score: 317.4 bits (812), Expect = 3.0e-83
Identity = 167/253 (66.01%), Postives = 186/253 (73.52%), Query Frame = 0 

Query: 33  LGNSQFFAPCVFYTSFSLRSKKRTPKHQDNGALLSAENNAHQLPESHHRVKAIASIFIRV 92
           +G+SQFFAPCV+ TSFS+ SKK     QD+GALLS ENNA     S  +   I  + I V
Sbjct: 1   MGSSQFFAPCVYCTSFSIPSKKINSNRQDSGALLSGENNAVARNTSQKKAMLI-FMCIPV 60

Query: 93  IPVKSTYIYM--------IELSIGRWVFHV----------------ERKILDVGPSNWQK 152
            P KS  I++        I+  I RW+FH+                ERKILDVGPSNWQK
Sbjct: 61  GPGKSRLIFVSLRNFAVSIDRIIPRWIFHLGQNLILDSDLYLLHVEERKILDVGPSNWQK 120

Query: 153 ACFVPTKSDAKVVAFRRWLNKYSDGHVDWRGKFSGILPPSPPKEQLMDRYWSHVVNCSSC 212
           ACFVPTKSDAKVVAFRRWLN+YSD  VDWRGKFS ILPPSP KEQLMDRYWSHVVNCSSC
Sbjct: 121 ACFVPTKSDAKVVAFRRWLNRYSDSQVDWRGKFSVILPPSPSKEQLMDRYWSHVVNCSSC 180

Query: 213 NGAYKGLNALEVVLQVISIALLGVFAATNQSLVSRTARIVMVAMAVLCFAASRWLSHFIY 262
             AYKGLNALEVVLQVISIA LG+FAAT QS VS  AR++M+ MA+ CFA+S WLSHFIY
Sbjct: 181 KVAYKGLNALEVVLQVISIASLGIFAATKQSFVSGAARVLMLVMAIFCFASSMWLSHFIY 240

[Close]
BLAST of Carg18030 vs. TrEMBL
Match: tr|A0A2R6QTQ2|A0A2R6QTQ2_ACTCH (Protochlorophyllide-dependent translocon component 52 like OS=Actinidia chinensis var. chinensis OX=1590841 GN=CEY00_Acc15069 PE=4 SV=1)

HSP 1 Score: 300.1 bits (767), Expect = 5.0e-78
Identity = 154/287 (53.66%), Postives = 192/287 (66.90%), Query Frame = 0 

Query: 1   MEFTEKADREGGKPIEIFIKDLDAYGFISNQELGNSQFFAPCVFYTSFSLRSKKRTPKHQ 60
           + FT KADREGG+P+E+ IK LD  G+I+ QE  +S F APC+F    S+ +    P ++
Sbjct: 268 LSFTVKADREGGRPLEMSIKKLDVNGYIAKQEWADSSFIAPCIFSAFTSVAA---DPSNE 327

Query: 61  DNGALLSAENNAHQLPESHHRVKAIASIFI--RVIPVKSTYIYMIELSIG--------RW 120
              +  + E  + Q P+     K +A IFI   V P  S  I+    + G        RW
Sbjct: 328 SVSSAGTKEEPSSQKPQ-----KRVALIFICVPVSPGNSRLIWAFPRNFGLWIDRIVPRW 387

Query: 121 VFHV----------------ERKILDVGPSNWQKACFVPTKSDAKVVAFRRWLNKYSDGH 180
           +FHV                ERKI+D+GPSNW+KACFVPTKSDA VV FRRWLN Y+ G 
Sbjct: 388 MFHVGQNLILDSDLYLLHLEERKIMDIGPSNWKKACFVPTKSDALVVGFRRWLNNYAGGQ 447

Query: 181 VDWRGKFSGILPPSPPKEQLMDRYWSHVVNCSSCNGAYKGLNALEVVLQVISIALLGVFA 240
           VDWR KFSG LPP+PP+EQL+DRYWSHVVNCSSC  AYKGLN LEVVLQVISIAL+G+ A
Sbjct: 448 VDWRTKFSGALPPTPPREQLLDRYWSHVVNCSSCRVAYKGLNVLEVVLQVISIALIGIVA 507

Query: 241 ATNQSLVSRTARIVMVAMAVLCFAASRWLSHFIYKNFHFHDYNHALR 262
           A  Q ++S +AR  +V++A+LCF  SRWLSHF+YKNFH+HDYNHA R
Sbjct: 508 AAKQGILSASARTTLVSVALLCFVGSRWLSHFVYKNFHYHDYNHAFR 546

The following BLAST results are available for this feature:
BLAST of Carg18030 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022933573.12.2e-12281.85protochlorophyllide-dependent translocon component 52, chloroplastic [Cucurbita ... [more]
XP_022967161.13.2e-12180.78protochlorophyllide-dependent translocon component 52, chloroplastic [Cucurbita ... [more]
XP_023531366.19.4e-12180.78protochlorophyllide-dependent translocon component 52, chloroplastic [Cucurbita ... [more]
XP_008451029.12.3e-10370.11PREDICTED: protochlorophyllide-dependent translocon component 52, chloroplastic-... [more]
XP_022147615.18.3e-10168.66protochlorophyllide-dependent translocon component 52, chloroplastic-like [Momor... [more]
BLAST of Carg18030 vs. TAIR10
Match NameE-valueIdentityDescription
AT4G25650.27.1e-5443.51ACD1-like[more]
AT3G44880.16.7e-1234.53Pheophorbide a oxygenase family protein with Rieske [2Fe-2S] domain[more]
BLAST of Carg18030 vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|Q8W496|PTC52_ARATH1.3e-5243.51Protochlorophyllide-dependent translocon component 52, chloroplastic OS=Arabidop... [more]
sp|Q9FYC2|PAO_ARATH1.2e-1034.53Pheophorbide a oxygenase, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PAO P... [more]
BLAST of Carg18030 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A1S3BQM5|A0A1S3BQM5_CUCME1.5e-10370.11protochlorophyllide-dependent translocon component 52, chloroplastic-like OS=Cuc... [more]
tr|A0A1S3BQK3|A0A1S3BQK3_CUCME1.0e-9967.26protochlorophyllide-dependent translocon component 52, chloroplastic-like OS=Cuc... [more]
tr|A0A0A0LX68|A0A0A0LX68_CUCSA1.8e-9664.77Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G600130 PE=4 SV=1[more]
tr|A0A0A0LWW6|A0A0A0LWW6_CUCSA3.0e-8366.01Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G600150 PE=4 SV=1[more]
tr|A0A2R6QTQ2|A0A2R6QTQ2_ACTCH5.0e-7853.66Protochlorophyllide-dependent translocon component 52 like OS=Actinidia chinensi... [more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg18030-RACarg18030-RAmRNA


InterPro
Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR21266IRON-SULFUR DOMAIN CONTAINING PROTEINcoord: 4..261
NoneNo IPR availablePANTHERPTHR21266:SF38SUBFAMILY NOT NAMEDcoord: 4..261