Carg06126 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg06126
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	protochlorophyllide-dependent translocon component 52, chloroplastic-like
Location	Cucurbita_argyrosperma_scaffold_026 : 1198486 .. 1200964 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexonthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTGTTCATTCACAGTGAAAGTTGACAGGGAAGGCGGCAGACCACTGGATTTGATTGTTGAAAAGTTGAAAGCAGATGGTTATGTTGGCAAACTTGATCGGCTCCGTCACAAGTTTATTGCACCTTGTGTCTATTATTTCTTCTCTGATCCAGAGTTGGAGAGCAAGAACGATGAATCTGTATCATCAACTGCAAACGTAAAGGTATATTACACAACAGCATAACCGCATTTCATGTCTTTCGTTTCCTTGCTTTGAGTTGATAATTGTTAAATCTTCGGTAAATCCAAAAGCTTAAGCTGATAGGTTATAGTAAATTAATAATTAAACTAAAAGTTTAAGTCGATGGGTTATGATAAATTTAATGATATCAATACTTCGACTCTTTAACTGCATTTTCTGGGTTTTGATTCATGAAAAGTTTGTTGTTCCAGAAACCGCCAACTGAAACCTCGCAGCGAAGATCGTTCCTGGTATTCTTCTGCATCCCAGTCAGTCCAGGTAAAAGCAGATTGATATGGTCCTTCCCCAGGAACTTTAGCAAATGGATAAACCATATTGTCCCACGATGGATATTTCATATAGGGCAGAACTTGGTTCTAGATTCAGATATGTATTTTCTTCGTGTTGAGGTAAGTGATTTCGTTCATGGATATCGTATTCGCCTGTCGAGTATAGTTCCTGATGATGTTTGTTCTGAATTTAGGAGCACAAATTAGAGGAAATTGGCCCTTCTAATTGGCATAAAGCTTGTTATATGCCTGTTAAATCAGATGCCTTGGTGGTTGGATTTAGAAGATGGTTGAACAAGTATGCAGGTGGTCAAGTTGATTGGGGAGGCAAATATTCTGGCTCCCTCCCTCCACTGCCTCCTAGAGAACAGGTGTTTGAGAGGTACCCTCTAATTTCTGCTACTCAACTTCCCTACTACTCTTTCGAGAGAAGAAATTGGATTAGTGAAGTAGGCTGGTACAATATGTTAGGATCGCATAACAATGCACATACTAGATCTAGATAAACACAAAGAATAGGAGAGAGAAAATACAAGTATGAATATTGGTTAAAGGTTTACACTCGATCTAGATAACACAAAGAAAAAGAGGGAGAAAATATAAGGAAGAATATTGGCGGAAGGTTTACACTCAATCTAGATGAACACAAATAACAAGAGAGAGAAAAGTAAGGAAGAATATTGGTTGAAGGTTTACACTCGATTTAGATGAACACATGAACACAAAGAACAAGAGAGAGTAGATGCAAGAAAGAATATTGGCTAAAGGTTTAGCCTCGATCTAGATGAACACAAAGAACAATAGAGAGAAAATGCAAGAAAGAATATTGGCTAAAGGTCTACACTCGATCTAGATGAACACGAAGAACAAGAGAGAGAAAATGCAAGAAAGAATATTGGCTTAAGGTTTACACTCGATCTAGATGAACACAAAGAACAAAAGAGAGAAAATGCAAGGAAGAATATTGGCTAAAGGTTTACACTCGATCGAGATGAATAGAAAGAAGAAGAGAGAGAAAATGCAAGGAAGAATATTAGCTAAAGGTTTACACTCGATTTAGATGGACACAGAGAACAATAGAGAAAAAATGCAAGGAAGAATATTGGCTAAAGGTTTACACTCGATCTAGATGAACACGAAGAACAAAAGAGAGAAAATGCAAGAAAGAATGTTGGCTAAAAGTTTATATTGATAACGTCAAGTATGTATAACAAGAGAGAATACAGAAAATGCAAAAAATACGTTTTGAAATATCGATTTTAAGTGTGTGAGCAAAAATTAGCTGGAAATATCGATTTCGTAATTGGTTTTTGATTTTCAGGTATTGGAGTCATGTGGTGAACTGCAGAAGCTGCAATGGTGCATATAAAGCTCTGAGAATAGCTGAAGTGGGGCTGCAGGTCATCTCTTTGGCTGCAATTGGAGCTGTGGCATTGACAAAGCAGGGTGTAATTTGTGCAGCAGCTAGGGCCGCCATTGTCACCATTGCAATACTCTGCTTTGCTGCTTCAAAGTGGTTGTCCCATTTCATTCACAAAACTTTCCACTTCCAAGTCTACAATCATGCCCTGGTTTGACACTTTCTTTTCTCCCTCTTTTCATGTCTTTCTTGATTCTACAACTCAATTATAATTAATCTTGTACATATCAAAATGATCATATTTGGATTTGAGATAACCTGAAACTTCGGGGCCATATATATTTTTAGTTTAACCATCGTTATCAATGGCTTCGTTTTCATGACCTCTTTAGCAGATGTCATCAACAAGGCAGGGACACTTTACCTTTACTCGAAAAATTGTTAAACGTCAGGATGAGTTTTAAAAAGATACTTAGTAAGTGACCCTATTGTTGGGGTTAAGAAATAGACTCGTACAATATCTATCATGATTGGTGTGACCTTACTTTTGTTTTGTTTTGTTTTGTTTTGTTTTTTTTTTAATAGAGTTGGATAGATAGTATTTTCT

mRNA sequence

ATGTGTTCATTCACAGTGAAAGTTGACAGGGAAGGCGGCAGACCACTGGATTTGATTGTTGAAAAGTTGAAAGCAGATGGTTATGTTGGCAAACTTGATCGGCTCCGTCACAAGTTTATTGCACCTTGTGTCTATTATTTCTTCTCTGATCCAGAGTTGGAGAGCAAGAACGATGAATCTGTATCATCAACTGCAAACGTAAAGCGAAGATCGTTCCTGGTATTCTTCTGCATCCCAGTCAGTCCAGGGCAGAACTTGGTTCTAGATTCAGATATGTATTTTCTTCGTGTTGAGGAGCACAAATTAGAGGAAATTGGCCCTTCTAATTGGCATAAAGCTTGTTATATGCCTGTTAAATCAGATGCCTTGGTGGTTGGATTTAGAAGATGGTTGAACAAGTATGCAGGTGGTCAAGTTGATTGGGGAGGCAAATATTCTGGCTCCCTCCCTCCACTGCCTCCTAGAGAACAGGTGTTTGAGAGGTATTGGAGTCATGTGGTGAACTGCAGAAGCTGCAATGGTGCATATAAAGCTCTGAGAATAGCTGAAGTGGGGCTGCAGGTCATCTCTTTGGCTGCAATTGGAGCTGTGGCATTGACAAAGCAGGGTGTAATTTGTGCAGCAGCTAGGGCCGCCATTGTCACCATTGCAATACTCTGCTTTGCTGCTTCAAAGTGGTTGTCCCATTTCATTCACAAAACTTTCCACTTCCAAGTCTACAATCATGCCCTGGTTTGACACTTTCTTTTCTCCCTCTTTTCATGTCTTTCTTGATTCTACAACTCAATTATAATTAATCTTGTACATATCAAAATGATCATATTTGGATTTGAGATAACCTGAAACTTCGGGGCCATATATATTTTTAGTTTAACCATCGTTATCAATGGCTTCGTTTTCATGACCTCTTTAGCAGATGTCATCAACAAGGCAGGGACACTTTACCTTTACTCGAAAAATTGTTAAACGTCAGGATGAGTTTTAAAAAGATACTTAGTAAGTGACCCTATTGTTGGGGTTAAGAAATAGACTCGTACAATATCTATCATGATTGGTGTGACCTTACTTTTGTTTTGTTTTGTTTTGTTTTGTTTTTTTTTTAATAGAGTTGGATAGATAGTATTTTCT

Coding sequence (CDS)

ATGTGTTCATTCACAGTGAAAGTTGACAGGGAAGGCGGCAGACCACTGGATTTGATTGTTGAAAAGTTGAAAGCAGATGGTTATGTTGGCAAACTTGATCGGCTCCGTCACAAGTTTATTGCACCTTGTGTCTATTATTTCTTCTCTGATCCAGAGTTGGAGAGCAAGAACGATGAATCTGTATCATCAACTGCAAACGTAAAGCGAAGATCGTTCCTGGTATTCTTCTGCATCCCAGTCAGTCCAGGGCAGAACTTGGTTCTAGATTCAGATATGTATTTTCTTCGTGTTGAGGAGCACAAATTAGAGGAAATTGGCCCTTCTAATTGGCATAAAGCTTGTTATATGCCTGTTAAATCAGATGCCTTGGTGGTTGGATTTAGAAGATGGTTGAACAAGTATGCAGGTGGTCAAGTTGATTGGGGAGGCAAATATTCTGGCTCCCTCCCTCCACTGCCTCCTAGAGAACAGGTGTTTGAGAGGTATTGGAGTCATGTGGTGAACTGCAGAAGCTGCAATGGTGCATATAAAGCTCTGAGAATAGCTGAAGTGGGGCTGCAGGTCATCTCTTTGGCTGCAATTGGAGCTGTGGCATTGACAAAGCAGGGTGTAATTTGTGCAGCAGCTAGGGCCGCCATTGTCACCATTGCAATACTCTGCTTTGCTGCTTCAAAGTGGTTGTCCCATTTCATTCACAAAACTTTCCACTTCCAAGTCTACAATCATGCCCTGGTTTGA

Protein sequence

MCSFTVKVDREGGRPLDLIVEKLKADGYVGKLDRLRHKFIAPCVYYFFSDPELESKNDESVSSTANVKRRSFLVFFCIPVSPGQNLVLDSDMYFLRVEEHKLEEIGPSNWHKACYMPVKSDALVVGFRRWLNKYAGGQVDWGGKYSGSLPPLPPREQVFERYWSHVVNCRSCNGAYKALRIAEVGLQVISLAAIGAVALTKQGVICAAARAAIVTIAILCFAASKWLSHFIHKTFHFQVYNHALV

Homology

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BLAST of Carg06126 vs. NCBI nr
Match: XP_022961138.1 (protochlorophyllide-dependent translocon component 52, chloroplastic-like isoform X1 [Cucurbita moschata])

HSP 1 Score: 469.2 bits (1206), Expect = 8.8e-129
Identity = 238/276 (86.23%), Postives = 239/276 (86.59%), Query Frame = 0


Query: 6   VKVDREGGRPLDLIVEKLKADGYVGKLDRLRHKFIAPCVYYFFSDPELESKNDESVSSTA 65
           VKVDREGGRPLDLIVEKLK DGYVGKLDRLRHKFIAPCVYYFFSDPELESKNDESVSSTA
Sbjct: 272 VKVDREGGRPLDLIVEKLKPDGYVGKLDRLRHKFIAPCVYYFFSDPELESKNDESVSSTA 331

Query: 66  NVK--------RRSFLVFFCIPVSP----------------------------GQNLVLD 125
           NVK        RRSFLVFFCIPVSP                            GQNLVLD
Sbjct: 332 NVKKPPTETSQRRSFLVFFCIPVSPGKSRLIWSFPRNFSKWINHIVPRWIFHIGQNLVLD 391

Query: 126 SDMYFLRVEEHKLEEIGPSNWHKACYMPVKSDALVVGFRRWLNKYAGGQVDWGGKYSGSL 185
           SDMYFLRVEEHKLEEIGPSNWHKACY+PVKSDALVVGFRRWLNKYAGGQVDWGGKYSGSL
Sbjct: 392 SDMYFLRVEEHKLEEIGPSNWHKACYVPVKSDALVVGFRRWLNKYAGGQVDWGGKYSGSL 451

Query: 186 PPLPPREQVFERYWSHVVNCRSCNGAYKALRIAEVGLQVISLAAIGAVALTKQGVICAAA 245
           PPLPPREQVFERYWSHVVNCRSCNGAYKALRIAEVGLQVISLAAIGAVALTKQGVICAAA
Sbjct: 452 PPLPPREQVFERYWSHVVNCRSCNGAYKALRIAEVGLQVISLAAIGAVALTKQGVICAAA 511

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BLAST of Carg06126 vs. NCBI nr
Match: XP_022961139.1 (protochlorophyllide-dependent translocon component 52, chloroplastic-like isoform X2 [Cucurbita moschata])

HSP 1 Score: 466.1 bits (1198), Expect = 7.5e-128
Identity = 236/274 (86.13%), Postives = 238/274 (86.86%), Query Frame = 0


Query: 6   VKVDREGGRPLDLIVEKLKADGYVGKLDRLRHKFIAPCVYYFFSDPELESKNDESVSSTA 65
           VKVDREGGRPLDLIVEKLK DGYVGKLDRLRHKFIAPCVYYFFSDPELESKNDESVSSTA
Sbjct: 272 VKVDREGGRPLDLIVEKLKPDGYVGKLDRLRHKFIAPCVYYFFSDPELESKNDESVSSTA 331

Query: 66  N------VKRRSFLVFFCIPVSP----------------------------GQNLVLDSD 125
           N       +RRSFLVFFCIPVSP                            GQNLVLDSD
Sbjct: 332 NKPPTETSQRRSFLVFFCIPVSPGKSRLIWSFPRNFSKWINHIVPRWIFHIGQNLVLDSD 391

Query: 126 MYFLRVEEHKLEEIGPSNWHKACYMPVKSDALVVGFRRWLNKYAGGQVDWGGKYSGSLPP 185
           MYFLRVEEHKLEEIGPSNWHKACY+PVKSDALVVGFRRWLNKYAGGQVDWGGKYSGSLPP
Sbjct: 392 MYFLRVEEHKLEEIGPSNWHKACYVPVKSDALVVGFRRWLNKYAGGQVDWGGKYSGSLPP 451

Query: 186 LPPREQVFERYWSHVVNCRSCNGAYKALRIAEVGLQVISLAAIGAVALTKQGVICAAARA 245
           LPPREQVFERYWSHVVNCRSCNGAYKALRIAEVGLQVISLAAIGAVALTKQGVICAAARA
Sbjct: 452 LPPREQVFERYWSHVVNCRSCNGAYKALRIAEVGLQVISLAAIGAVALTKQGVICAAARA 511

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BLAST of Carg06126 vs. NCBI nr
Match: XP_023533465.1 (protochlorophyllide-dependent translocon component 52, chloroplastic-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 459.5 bits (1181), Expect = 7.0e-126
Identity = 233/274 (85.04%), Postives = 236/274 (86.13%), Query Frame = 0


Query: 6   VKVDREGGRPLDLIVEKLKADGYVGKLDRLRHKFIAPCVYYFFSDPELESKNDESVSSTA 65
           VKVDREGGRPLDLIVEKLKADGYVGKLDRLRHKFIAPCVYYFFSDPELESKNDESVSST+
Sbjct: 272 VKVDREGGRPLDLIVEKLKADGYVGKLDRLRHKFIAPCVYYFFSDPELESKNDESVSSTS 331

Query: 66  ------NVKRRSFLVFFCIPVSP----------------------------GQNLVLDSD 125
                   +RRSFLVFFCIPVSP                            GQNLVLDSD
Sbjct: 332 KKPPTETSQRRSFLVFFCIPVSPGKSRLIWSFPRNFSKWINHIVPRWIFHIGQNLVLDSD 391

Query: 126 MYFLRVEEHKLEEIGPSNWHKACYMPVKSDALVVGFRRWLNKYAGGQVDWGGKYSGSLPP 185
           MYFLRVEEHKLEEIGPSNWHKACY+PVKSDALVVGFRRWLNKYAGGQVDWGGKYSGSLPP
Sbjct: 392 MYFLRVEEHKLEEIGPSNWHKACYVPVKSDALVVGFRRWLNKYAGGQVDWGGKYSGSLPP 451

Query: 186 LPPREQVFERYWSHVVNCRSCNGAYKALRIAEVGLQVISLAAIGAVALTKQGVICAAARA 245
           LPPREQVFERYWSHVVNCRSCNGAYKALRIAEVGLQVISLAAIGAVALTKQGVICAAARA
Sbjct: 452 LPPREQVFERYWSHVVNCRSCNGAYKALRIAEVGLQVISLAAIGAVALTKQGVICAAARA 511

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BLAST of Carg06126 vs. NCBI nr
Match: XP_022988064.1 (protochlorophyllide-dependent translocon component 52, chloroplastic-like isoform X1 [Cucurbita maxima])

HSP 1 Score: 457.6 bits (1176), Expect = 2.7e-125
Identity = 231/276 (83.70%), Postives = 236/276 (85.51%), Query Frame = 0


Query: 6   VKVDREGGRPLDLIVEKLKADGYVGKLDRLRHKFIAPCVYYFFSDPELESKNDESVSSTA 65
           VKVDREGGRPLDLIVEKLKADGYVGKLDRLRHKFIAPCVYYFFSDPELESKNDESVSST+
Sbjct: 271 VKVDREGGRPLDLIVEKLKADGYVGKLDRLRHKFIAPCVYYFFSDPELESKNDESVSSTS 330

Query: 66  NV--------KRRSFLVFFCIPVSP----------------------------GQNLVLD 125
            V        +RRSFLVFFCIPVSP                            GQNL+LD
Sbjct: 331 KVQKLPTETSQRRSFLVFFCIPVSPGKSRLIWSFPRNFSKWINHIVPRWIFHIGQNLILD 390

Query: 126 SDMYFLRVEEHKLEEIGPSNWHKACYMPVKSDALVVGFRRWLNKYAGGQVDWGGKYSGSL 185
           SDMYFLRVEEHKLEEIGPSNWHKACY+PVKSDALVVGFRRWLNKYAGGQVDWGGKYSGSL
Sbjct: 391 SDMYFLRVEEHKLEEIGPSNWHKACYVPVKSDALVVGFRRWLNKYAGGQVDWGGKYSGSL 450

Query: 186 PPLPPREQVFERYWSHVVNCRSCNGAYKALRIAEVGLQVISLAAIGAVALTKQGVICAAA 245
           PPLPPREQVFERYWSHVVNCRSCNGAYKALRIAEVGLQVISLAAIGAVALTKQGVICA A
Sbjct: 451 PPLPPREQVFERYWSHVVNCRSCNGAYKALRIAEVGLQVISLAAIGAVALTKQGVICATA 510

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BLAST of Carg06126 vs. NCBI nr
Match: XP_022988065.1 (protochlorophyllide-dependent translocon component 52, chloroplastic-like isoform X2 [Cucurbita maxima])

HSP 1 Score: 456.1 bits (1172), Expect = 7.7e-125
Identity = 230/274 (83.94%), Postives = 235/274 (85.77%), Query Frame = 0


Query: 6   VKVDREGGRPLDLIVEKLKADGYVGKLDRLRHKFIAPCVYYFFSDPELESKNDESVSSTA 65
           VKVDREGGRPLDLIVEKLKADGYVGKLDRLRHKFIAPCVYYFFSDPELESKNDESVSST+
Sbjct: 271 VKVDREGGRPLDLIVEKLKADGYVGKLDRLRHKFIAPCVYYFFSDPELESKNDESVSSTS 330

Query: 66  ------NVKRRSFLVFFCIPVSP----------------------------GQNLVLDSD 125
                   +RRSFLVFFCIPVSP                            GQNL+LDSD
Sbjct: 331 KKLPTETSQRRSFLVFFCIPVSPGKSRLIWSFPRNFSKWINHIVPRWIFHIGQNLILDSD 390

Query: 126 MYFLRVEEHKLEEIGPSNWHKACYMPVKSDALVVGFRRWLNKYAGGQVDWGGKYSGSLPP 185
           MYFLRVEEHKLEEIGPSNWHKACY+PVKSDALVVGFRRWLNKYAGGQVDWGGKYSGSLPP
Sbjct: 391 MYFLRVEEHKLEEIGPSNWHKACYVPVKSDALVVGFRRWLNKYAGGQVDWGGKYSGSLPP 450

Query: 186 LPPREQVFERYWSHVVNCRSCNGAYKALRIAEVGLQVISLAAIGAVALTKQGVICAAARA 245
           LPPREQVFERYWSHVVNCRSCNGAYKALRIAEVGLQVISLAAIGAVALTKQGVICA ARA
Sbjct: 451 LPPREQVFERYWSHVVNCRSCNGAYKALRIAEVGLQVISLAAIGAVALTKQGVICATARA 510

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BLAST of Carg06126 vs. TAIR10
Match: AT4G25650.2 (ACD1-like)

HSP 1 Score: 202.6 bits (514), Expect = 2.8e-52
Identity = 113/272 (41.54%), Postives = 141/272 (51.84%), Query Frame = 0


Query: 7   KVDREGGRPLDLIVEKLKADGYVGKLDRLRHKFIAPCVYYFFSDPELESKND----ESVS 66
           K+DREGG+PL++ V+KL   G+  K +     FIAPCVY   +DP  E +++     +  
Sbjct: 288 KIDREGGKPLEINVKKLDNKGFFSKQEWGYSNFIAPCVYRSSTDPLPEQEHEYPAPAASD 347

Query: 67  STANVKRRSFLVFFCIPVSP----------------------------GQNLVLDSDMYF 126
             A  KRR  L+F CIPVSP                            GQN +LDSD++ 
Sbjct: 348 KAALSKRRLSLIFICIPVSPGRSRLIWTFPRNFGVFIDKIVPRWVFHIGQNTILDSDLHL 407

Query: 127 LRVEEHKLEEIGPSNWHKACYMPVKSDALVVGFRRWLNKYAGGQVDWGGKYSG-SLPPLP 186
           L VEE K+ E GP NW KAC++P KSDA VV FRRW NKY+  +VDW GK+    LPP P
Sbjct: 408 LHVEERKILERGPENWQKACFIPTKSDANVVTFRRWFNKYSEARVDWRGKFDPFLLPPTP 467

Query: 187 PREQVFERYWSHVVNCRSCNGAYKALRIAEVGLQVISLAAIGAVALTKQGVICAAARAAI 246
           PREQ+F+RYWSHV NC                                            
Sbjct: 468 PREQLFDRYWSHVENCSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 527

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BLAST of Carg06126 vs. Swiss-Prot
Match: sp|Q8W496|PTC52_ARATH (Protochlorophyllide-dependent translocon component 52, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PTC52 PE=2 SV=1)

HSP 1 Score: 202.6 bits (514), Expect = 5.0e-51
Identity = 113/272 (41.54%), Postives = 141/272 (51.84%), Query Frame = 0


Query: 7   KVDREGGRPLDLIVEKLKADGYVGKLDRLRHKFIAPCVYYFFSDPELESKND----ESVS 66
           K+DREGG+PL++ V+KL   G+  K +     FIAPCVY   +DP  E +++     +  
Sbjct: 288 KIDREGGKPLEINVKKLDNKGFFSKQEWGYSNFIAPCVYRSSTDPLPEQEHEYPAPAASD 347

Query: 67  STANVKRRSFLVFFCIPVSP----------------------------GQNLVLDSDMYF 126
             A  KRR  L+F CIPVSP                            GQN +LDSD++ 
Sbjct: 348 KAALSKRRLSLIFICIPVSPGRSRLIWTFPRNFGVFIDKIVPRWVFHIGQNTILDSDLHL 407

Query: 127 LRVEEHKLEEIGPSNWHKACYMPVKSDALVVGFRRWLNKYAGGQVDWGGKYSG-SLPPLP 186
           L VEE K+ E GP NW KAC++P KSDA VV FRRW NKY+  +VDW GK+    LPP P
Sbjct: 408 LHVEERKILERGPENWQKACFIPTKSDANVVTFRRWFNKYSEARVDWRGKFDPFLLPPTP 467

Query: 187 PREQVFERYWSHVVNCRSCNGAYKALRIAEVGLQVISLAAIGAVALTKQGVICAAARAAI 246
           PREQ+F+RYWSHV NC                                            
Sbjct: 468 PREQLFDRYWSHVENCSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 527

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BLAST of Carg06126 vs. Swiss-Prot
Match: sp|O49931|TIC55_PEA (Protein TIC 55, chloroplastic OS=Pisum sativum OX=3888 GN=TIC55 PE=1 SV=1)

HSP 1 Score: 46.2 bits (108), Expect = 6.0e-04
Identity = 56/240 (23.33%), Postives = 91/240 (37.92%), Query Frame = 0


Query: 38  KFIAPCVYYFFSDPELESKNDESVSSTANVKRRSFLVFFCIPVSPGQNL----------- 97
           +F APCV            N E V     +   S L F C P   G+++           
Sbjct: 306 RFEAPCVL---------QNNREIVDKNGEINHFSGL-FLCRPTGQGKSMLIVRFGATKRS 365

Query: 98  -----------------VLDSDMYFLRVE-EHKLEEIGPSNWHKACYMPVK-SDALVVGF 157
                            V + DM FL  + E  L+E  P+   K  Y+ +K SD  V  +
Sbjct: 366 PLIKLFPEWYFHQNASKVFEQDMGFLSSQNEILLKEKVPT---KELYLNLKSSDTWVAEY 425

Query: 158 RRWLNKYAGGQVDWGGKYSGSLPPLPP---------------------------REQVFE 217
           R+W++K   G     G  + SLP  P                               +  
Sbjct: 426 RKWMDKVGHGMPYHFGHSTISLPEEPAVVEHAPAGLVAGLSASSPAKGGIGTMHAPNLAN 485

Query: 218 RYWSHVVNCRSCNGAYKALRIAEVGLQ--VISLAAIGAVALTKQGVICAAARAAIVTIAI 219
           RY+ HV++C+ C+ A KA +I +  L   V++LAA+  +   +Q  +   A A++ ++ +
Sbjct: 486 RYFRHVIHCKGCSSAIKAFQIWKNVLSGVVVALAALAILVSGRQWKVLLLASASLCSVGV 532

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BLAST of Carg06126 vs. TrEMBL
Match: tr|A0A0A0LX74|A0A0A0LX74_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G600180 PE=4 SV=1)

HSP 1 Score: 411.4 bits (1056), Expect = 1.4e-111
Identity = 205/278 (73.74%), Postives = 222/278 (79.86%), Query Frame = 0


Query: 11  EGGRPLDLIVEKLKADGYVGKLDRLRHKFIAPCVYYFFSDPEL-------ESKNDESVSS 70
           EGGRPL+L+VEKLKADG+VG+ +RLRHKF APCVYYFF+DPEL        +KNDE+VSS
Sbjct: 277 EGGRPLELVVEKLKADGFVGRHERLRHKFFAPCVYYFFTDPELVQGNVESSTKNDEAVSS 336

Query: 71  TANVK--------RRSFLVFFCIPVSP----------------------------GQNLV 130
           TANVK        RRSFLVFFCIPVSP                            GQNL+
Sbjct: 337 TANVKKPPTEISQRRSFLVFFCIPVSPGKSRLIWAFPRNFGKWMNYIVPRWMFHIGQNLI 396

Query: 131 LDSDMYFLRVEEHKLEEIGPSNWHKACYMPVKSDALVVGFRRWLNKYAGGQVDWGGKYSG 190
           LDSDMYFLRVEEHK EEIGPSNWHKACY+PVKSDALVVGFRRWLNKYAGG+VDWGGKYSG
Sbjct: 397 LDSDMYFLRVEEHKYEEIGPSNWHKACYVPVKSDALVVGFRRWLNKYAGGRVDWGGKYSG 456

Query: 191 SLPPLPPREQVFERYWSHVVNCRSCNGAYKALRIAEVGLQVISLAAIGAVALTKQGVICA 246
           SLPP+PPREQVFERYWSHVVNC+SCNGAYKAL IAEV LQ IS+AAIGA+AL K GV+ A
Sbjct: 457 SLPPIPPREQVFERYWSHVVNCKSCNGAYKALNIAEVSLQAISMAAIGALALIKHGVLSA 516

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BLAST of Carg06126 vs. TrEMBL
Match: tr|A0A1S4DYB5|A0A1S4DYB5_CUCME (LOW QUALITY PROTEIN: protochlorophyllide-dependent translocon component 52, chloroplastic-like OS=Cucumis melo OX=3656 GN=LOC103492541 PE=4 SV=1)

HSP 1 Score: 400.6 bits (1028), Expect = 2.5e-108
Identity = 199/269 (73.98%), Postives = 217/269 (80.67%), Query Frame = 0


Query: 5   TVKVDREGGRPLDLIVEKLKADGYVGKLDRLRHKFIAPCVYYFFSDPELESKNDESVSST 64
           ++K DREGGRPL+L+VEKLKADG+VG+ +R+RHKF APCVYY FSDPEL   N   V S+
Sbjct: 264 SIKADREGGRPLELVVEKLKADGFVGRHERIRHKFFAPCVYYXFSDPELVQGN---VESS 323

Query: 65  ANVKRRSFLVFFCIPVSP----------------------------GQNLVLDSDMYFLR 124
              +RRSFLVF+CIPVSP                            GQNL+LDSDMYFLR
Sbjct: 324 KISQRRSFLVFYCIPVSPGKSRLIWAFPRNFGKWMNYIVPRWMFHIGQNLILDSDMYFLR 383

Query: 125 VEEHKLEEIGPSNWHKACYMPVKSDALVVGFRRWLNKYAGGQVDWGGKYSGSLPPLPPRE 184
           VEEHKLEEIGPSNWHKACY+PVKSDALVVGFRRWLNKYAGG+VDWGGKYSGSLPPLPPRE
Sbjct: 384 VEEHKLEEIGPSNWHKACYVPVKSDALVVGFRRWLNKYAGGRVDWGGKYSGSLPPLPPRE 443

Query: 185 QVFERYWSHVVNCRSCNGAYKALRIAEVGLQVISLAAIGAVALTKQGVICAAARAAIVTI 244
           +VFERY SHVVNC+SCNGAYKAL IAEV LQ IS+AAIGA+ALTK GVI A  RA IVTI
Sbjct: 444 EVFERYRSHVVNCKSCNGAYKALNIAEVSLQAISIAAIGALALTKNGVISATVRATIVTI 503

Query: 245 AILCFAASKWLSHFIHKTFHFQVYNHALV 246
           AILCFAASKWLSHFIHKTFHFQ YNHALV
Sbjct: 504 AILCFAASKWLSHFIHKTFHFQDYNHALV 529

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BLAST of Carg06126 vs. TrEMBL
Match: tr|A0A1S3BRB5|A0A1S3BRB5_CUCME (protochlorophyllide-dependent translocon component 52, chloroplastic-like OS=Cucumis melo OX=3656 GN=LOC103492438 PE=4 SV=1)

HSP 1 Score: 384.4 bits (986), Expect = 1.9e-103
Identity = 197/282 (69.86%), Postives = 211/282 (74.82%), Query Frame = 0


Query: 6   VKVDREGGRPLDLIVEKLKADGYVGKLDRLRHKFIAPCVYYFFSDPEL-------ESKND 65
           V  DRE GRPL+++VEKLKADG+VGK + LRHKF APCVYY+F+DPEL        SKND
Sbjct: 258 VNTDRERGRPLEMVVEKLKADGFVGKDETLRHKFFAPCVYYYFTDPELVQGNVESSSKND 317

Query: 66  ESVSSTANVK-------RRSFLVFFCIPVSPG---------------------------- 125
            S+SSTANVK       RR+FL FFCIPVSPG                            
Sbjct: 318 GSLSSTANVKKPPTEISRRTFLAFFCIPVSPGKSRLIWAFPNNFDKWVHSIVPRWMFHIV 377

Query: 126 QNLVLDSDMYFLRVEEHKLEEIGPSNWHKACYMPVKSDALVVGFRRWLNKYAGGQVDWGG 185
           QNL+LDSDMY LRVEEHK EEIG SNWHKACY+PVKSDA VVGFRRWLNKYAGGQVDWGG
Sbjct: 378 QNLILDSDMYLLRVEEHKYEEIGTSNWHKACYVPVKSDAFVVGFRRWLNKYAGGQVDWGG 437

Query: 186 KYSGSLPPLPPREQVFERYWSHVVNCRSCNGAYKALRIAEVGLQVISLAAIGAVALTKQG 245
           KYSGSLPPLPPREQV ERYWSHVVNC+SCNGAYKAL  AEV LQVIS+AAIGA+ALTK G
Sbjct: 438 KYSGSLPPLPPREQVLERYWSHVVNCKSCNGAYKALNKAEVSLQVISIAAIGALALTKSG 497

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BLAST of Carg06126 vs. TrEMBL
Match: tr|A0A0A0LZS1|A0A0A0LZS1_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G600170 PE=4 SV=1)

HSP 1 Score: 352.8 bits (904), Expect = 6.1e-94
Identity = 182/268 (67.91%), Postives = 198/268 (73.88%), Query Frame = 0


Query: 18  LIVEKLKADGYVGKLDRLRHKFIAPCVYYFFSDPEL-----ESKNDESVSSTANVK---- 77
           ++VEKLKADG+VGK + LRHKF APCVYY+F+DPEL     ESK D SVSSTANVK    
Sbjct: 1   MVVEKLKADGFVGKDETLRHKFFAPCVYYYFTDPELVQGNVESKKDGSVSSTANVKKPPT 60

Query: 78  ---RRSFLVFFCIPVSPG----------------------------QNLVLDSDMYFLRV 137
              RR+FL FFCIPVSPG                            QNL+LDSDMY L V
Sbjct: 61  EISRRTFLAFFCIPVSPGKSRLIWAFPINLDKWVHFIVPRWIFHIVQNLILDSDMYLLHV 120

Query: 138 EEHKLEEIGPSNWHKACYMPVKSDALVVGFRRWLNKYAGGQVDWGGKYSGSLPPLPPREQ 197
           EEHK EEIGPSNWHKACY+PVKSDA VVGFRRWLNKYAGGQVDWGGKYSGSLP L PR  
Sbjct: 121 EEHKYEEIGPSNWHKACYVPVKSDAFVVGFRRWLNKYAGGQVDWGGKYSGSLPSLSPRAL 180

Query: 198 VFERYWSHVVNCRSCNGAYKALRIAEVGLQVISLAAIGAVALTKQGVICAAARAAIVTIA 246
           V ERYWSHVVNC+SCNGAYKAL  AEV LQVIS+AAIG +ALT+ GVI A  RA I  IA
Sbjct: 181 VLERYWSHVVNCKSCNGAYKALNKAEVSLQVISIAAIGVLALTQNGVISAKVRATIFIIA 240

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BLAST of Carg06126 vs. TrEMBL
Match: tr|A0A2C9UFY5|A0A2C9UFY5_MANES (Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_15G107400 PE=4 SV=1)

HSP 1 Score: 317.0 bits (811), Expect = 3.7e-83
Identity = 157/272 (57.72%), Postives = 192/272 (70.59%), Query Frame = 0


Query: 6   VKVDREGGRPLDLIVEKLKADGYVGKLDRLRHKFIAPCVYYFFSDPELESKNDESVSSTA 65
           VKVDREGG P+DL V+KL  DGY+G +     KFIAPC++Y +++P +E + + + SS  
Sbjct: 269 VKVDREGGIPVDLSVKKLDKDGYIGNMAWGSSKFIAPCIFYAYTEP-VEDQGNGTASSPQ 328

Query: 66  NVK-----RRSFLVFFCIPVSP----------------------------GQNLVLDSDM 125
           + K     RR  L+F CIPVSP                            GQNL+LDSD+
Sbjct: 329 SKKQLSTHRRMALIFICIPVSPGNSRLIWVFPRNFGVWIDKIVPRWMFHVGQNLILDSDL 388

Query: 126 YFLRVEEHKLEEIGPSNWHKACYMPVKSDALVVGFRRWLNKYAGGQVDWGGKYSGSLPPL 185
           Y L VEE K+ ++GP+NW KAC++P KSDALVVGFRRWLNKYAGGQVDW GKYSG+LPP 
Sbjct: 389 YLLHVEERKIMDVGPANWQKACFVPTKSDALVVGFRRWLNKYAGGQVDWRGKYSGALPPT 448

Query: 186 PPREQVFERYWSHVVNCRSCNGAYKALRIAEVGLQVISLAAIGAVALTKQGVICAAARAA 245
           PPREQ+ +RYWSHVVNCRSCN A+K L   EV L VISL +IG VA  KQGVI AAAR  
Sbjct: 449 PPREQLMDRYWSHVVNCRSCNSAHKGLSALEVILPVISLVSIGIVAAAKQGVISAAARTT 508

The following BLAST results are available for this feature:

BLAST of Carg06126 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022961138.1	8.8e-129	86.23	protochlorophyllide-dependent translocon component 52, chloroplastic-like isofor...	[more]
XP_022961139.1	7.5e-128	86.13	protochlorophyllide-dependent translocon component 52, chloroplastic-like isofor...	[more]
XP_023533465.1	7.0e-126	85.04	protochlorophyllide-dependent translocon component 52, chloroplastic-like [Cucur...	[more]
XP_022988064.1	2.7e-125	83.70	protochlorophyllide-dependent translocon component 52, chloroplastic-like isofor...	[more]
XP_022988065.1	7.7e-125	83.94	protochlorophyllide-dependent translocon component 52, chloroplastic-like isofor...	[more]

BLAST of Carg06126 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G25650.2	2.8e-52	41.54	ACD1-like	[more]

BLAST of Carg06126 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q8W496\|PTC52_ARATH	5.0e-51	41.54	Protochlorophyllide-dependent translocon component 52, chloroplastic OS=Arabidop...	[more]
sp\|O49931\|TIC55_PEA	6.0e-04	23.33	Protein TIC 55, chloroplastic OS=Pisum sativum OX=3888 GN=TIC55 PE=1 SV=1	[more]

BLAST of Carg06126 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0LX74\|A0A0A0LX74_CUCSA	1.4e-111	73.74	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G600180 PE=4 SV=1	[more]
tr\|A0A1S4DYB5\|A0A1S4DYB5_CUCME	2.5e-108	73.98	LOW QUALITY PROTEIN: protochlorophyllide-dependent translocon component 52, chlo...	[more]
tr\|A0A1S3BRB5\|A0A1S3BRB5_CUCME	1.9e-103	69.86	protochlorophyllide-dependent translocon component 52, chloroplastic-like OS=Cuc...	[more]
tr\|A0A0A0LZS1\|A0A0A0LZS1_CUCSA	6.1e-94	67.91	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G600170 PE=4 SV=1	[more]
tr\|A0A2C9UFY5\|A0A2C9UFY5_MANES	3.7e-83	57.72	Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_15G107400 PE=4 SV=...	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg06126-RA	Carg06126-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR21266	IRON-SULFUR DOMAIN CONTAINING PROTEIN	coord: 83..244 coord: 4..84
None	No IPR available	PANTHER	PTHR21266:SF38	SUBFAMILY NOT NAMED	coord: 83..244 coord: 4..84

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg06126	Cla011097	Watermelon (97103) v1	carwmB0018
Carg06126	MELO3C015590	Melon (DHL92) v3.5.1	carmeB0019
Carg06126	ClCG03G014430	Watermelon (Charleston Gray)	carwcgB0024
Carg06126	CSPI01G29360	Wild cucumber (PI 183967)	carcpiB0015
Carg06126	Cucsa.142410	Cucumber (Gy14) v1	carcgyB0020
Carg06126	CmaCh11G007880	Cucurbita maxima (Rimu)	carcmaB0027
Carg06126	CmaCh10G010020	Cucurbita maxima (Rimu)	carcmaB0026
Carg06126	CmoCh11G007940	Cucurbita moschata (Rifu)	carcmoB0028
Carg06126	CmoCh10G010570	Cucurbita moschata (Rifu)	carcmoB0027
Carg06126	Lsi06G004050	Bottle gourd (USVL1VR-Ls)	carlsiB021
Carg06126	Cp4.1LG05g08640	Cucurbita pepo (Zucchini)	carcpeB0038
Carg06126	Cp4.1LG04g11680	Cucurbita pepo (Zucchini)	carcpeB0037
Carg06126	CsGy1G028630	Cucumber (Gy14) v2	carcgybB0014
Carg06126	CsaV3_1G041770	Cucumber (Chinese Long) v3	carcucB0015
Carg06126	Cla97C03G064630	Watermelon (97103) v2	carwmbB0020
Carg06126	Bhi02G001440	Wax gourd	carwgoB0027

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Carg06126	Carg18030	Silver-seed gourd	carcarB017

The following block(s) are covering this gene:


Gene	Organism	Block
Carg06126	Cucumber (Chinese Long) v2	carcuB0015
Carg06126	Melon (DHL92) v3.6.1	carmedB0020