Carg17953 (gene) Silver-seed gourd

Overview
NameCarg17953
Typegene
OrganismCucurbita argyrosperma (Silver-seed gourd)
DescriptionPentatricopeptide repeat-containing protein
LocationCucurbita_argyrosperma_scaffold_114 : 420895 .. 422466 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATCGTTCTCAACGGTGGAAAATCCAACTTGGCACGCTCTCTGTTCTCCCGAGTTGAGATCAAATTTCCACATTTTCAATTGCTCCTCCCCAAGTTCATTTGGAGTTCAGATCGAAAAACACCTACTGATGCAATACCCAATGGTTGCTATTTTTCCAAGGAACAAAGATTTCTGTCTCTTTTCAAGCAATGCTCCGCCGTGAAAGACTTGAATCAACTCCATGCCCGTATTATCCAGTCGGGTTTCGATCAGAATCTCTTCGTTCTTGGCAAACTCATTGAGTTTTGTGCGGTTTCGGCCCATGGCGACATGAATTACGCTGTTGCTGTTTTCAACCGAATCGAAAACCCAGATGGGTTTCTTTGGAATACAATGATAAGGGGATTTGGAAGAATTAGTAATCTTCCTAAAGCGTTTGAGTTCTACAAGCGAATGCTAGAGAAGGGAATCGCGGCAGACAATTTCACTTTTTCTTTCTTGCTAAAGATTTGTGGGCAGTTGGGGTCAATTATGTTGGGCAAGCAGTTACATGTCAATATTCTGAAACTTGGCCTCGATTCCCATGTGTATGTTAGGAACACGCTTATTCATATGTATGGCAGGTTAAAAGACGTCAAACTAGCACGCAACCTGTTTGATGAAATGCCCAAACCAGGTTTGGTAGCTTGGAATACAGTTATCGACTGTCATGTCTCTTGTGGGATGTACAACGAAGCACTTGCCTTGTTTCTTCAAATGTTGCAGAGTGGCGTAGAGCCTGACGAAGCCACACTGGTTGTGACGGTCTCAGCATGTTCTGCACTGGGTGCACTGGACTTTGGGAGGTGGGTTCATTCCCATGTGAAGGATAACGATAGAGGAAAGACTATTGCCGTTTTCAATTCATTGATCGACATGTACGCCAAGTGTGGAGCAGTTGAAGACGCCCGTGAGATGTTTAATGCAACAAGTGGCAAGAACATAGTAACATGGAACACAATGATCATGGGATTAGCTACACACGGCGATGTAGAGGATGCACTGACATTATTCTCAAACATGTTAGCAGAGAAGATTGTGACTCCTGATGGCGTGACATTCTTGGGAGTATTGTGTGCTTGTAACCATGGAGGAAAGGTGGAGGAAGGGAGGAGATATTTTGATCTAATGACCAAACACTGCAATATCCAACCAACAGTTAAGCATTATGGATCAATGGTGGACATTCTGGGACGAGCTGGGTTTGTAGAAGAAGCTTATCAGCTGATACGGAGTATGCCAATGGAGTGTAATGCTGTTATATGGAGAACATTACTTGCAGCCTGTCGGATGCATGGAAATGTTAAGCTCGGGGAGAGAGTGAGGAGCCATGTTCTTGAGATAGAGCCAGATCATAGTAGTGATTATGTTCTTCTTGCAAATATATATGCAAGCTCTGGTCAATGGAATGAAATGATGAAGGTCAGAAAATCAATGCAACGAAAAGGAGTGCAGAAACCAGAGCCCGGTAATAGTTTTTTGGAAATTAATCCATGCAGGAAGTTGGAGATGGAGACTGTTGAGAATTATAACAATGCAGAAACAAACTAA

mRNA sequence

ATGATCGTTCTCAACGGTGGAAAATCCAACTTGGCACGCTCTCTGTTCTCCCGAGTTGAGATCAAATTTCCACATTTTCAATTGCTCCTCCCCAAGTTCATTTGGAGTTCAGATCGAAAAACACCTACTGATGCAATACCCAATGGTTGCTATTTTTCCAAGGAACAAAGATTTCTGTCTCTTTTCAAGCAATGCTCCGCCGTGAAAGACTTGAATCAACTCCATGCCCGTATTATCCAGTCGGGTTTCGATCAGAATCTCTTCGTTCTTGGCAAACTCATTGAGTTTTGTGCGGTTTCGGCCCATGGCGACATGAATTACGCTGTTGCTGTTTTCAACCGAATCGAAAACCCAGATGGGTTTCTTTGGAATACAATGATAAGGGGATTTGGAAGAATTAGTAATCTTCCTAAAGCGTTTGAGTTCTACAAGCGAATGCTAGAGAAGGGAATCGCGGCAGACAATTTCACTTTTTCTTTCTTGCTAAAGATTTGTGGGCAGTTGGGGTCAATTATGTTGGGCAAGCAGTTACATGTCAATATTCTGAAACTTGGCCTCGATTCCCATGTGTATGTTAGGAACACGCTTATTCATATGTATGGCAGGTTAAAAGACGTCAAACTAGCACGCAACCTGTTTGATGAAATGCCCAAACCAGGTTTGGTAGCTTGGAATACAGTTATCGACTGTCATGTCTCTTGTGGGATGTACAACGAAGCACTTGCCTTGTTTCTTCAAATGTTGCAGAGTGGCGTAGAGCCTGACGAAGCCACACTGGTTGTGACGGTCTCAGCATGTTCTGCACTGGGTGCACTGGACTTTGGGAGGTGGGTTCATTCCCATGTGAAGGATAACGATAGAGGAAAGACTATTGCCGTTTTCAATTCATTGATCGACATGTACGCCAAGTGTGGAGCAGTTGAAGACGCCCGTGAGATGTTTAATGCAACAAGTGGCAAGAACATAGTAACATGGAACACAATGATCATGGGATTAGCTACACACGGCGATGTAGAGGATGCACTGACATTATTCTCAAACATGTTAGCAGAGAAGATTGTGACTCCTGATGGCGTGACATTCTTGGGAGTATTGTGTGCTTGTAACCATGGAGGAAAGGTGGAGGAAGGGAGGAGATATTTTGATCTAATGACCAAACACTGCAATATCCAACCAACAGTTAAGCATTATGGATCAATGGTGGACATTCTGGGACGAGCTGGGTTTGTAGAAGAAGCTTATCAGCTGATACGGAGTATGCCAATGGAGTGTAATGCTGTTATATGGAGAACATTACTTGCAGCCTGTCGGATGCATGGAAATGTTAAGCTCGGGGAGAGAGTGAGGAGCCATGTTCTTGAGATAGAGCCAGATCATAGTAGTGATTATGTTCTTCTTGCAAATATATATGCAAGCTCTGGTCAATGGAATGAAATGATGAAGGTCAGAAAATCAATGCAACGAAAAGGAGTGCAGAAACCAGAGCCCGGTAATAGTTTTTTGGAAATTAATCCATGCAGGAAGTTGGAGATGGAGACTGTTGAGAATTATAACAATGCAGAAACAAACTAA

Coding sequence (CDS)

ATGATCGTTCTCAACGGTGGAAAATCCAACTTGGCACGCTCTCTGTTCTCCCGAGTTGAGATCAAATTTCCACATTTTCAATTGCTCCTCCCCAAGTTCATTTGGAGTTCAGATCGAAAAACACCTACTGATGCAATACCCAATGGTTGCTATTTTTCCAAGGAACAAAGATTTCTGTCTCTTTTCAAGCAATGCTCCGCCGTGAAAGACTTGAATCAACTCCATGCCCGTATTATCCAGTCGGGTTTCGATCAGAATCTCTTCGTTCTTGGCAAACTCATTGAGTTTTGTGCGGTTTCGGCCCATGGCGACATGAATTACGCTGTTGCTGTTTTCAACCGAATCGAAAACCCAGATGGGTTTCTTTGGAATACAATGATAAGGGGATTTGGAAGAATTAGTAATCTTCCTAAAGCGTTTGAGTTCTACAAGCGAATGCTAGAGAAGGGAATCGCGGCAGACAATTTCACTTTTTCTTTCTTGCTAAAGATTTGTGGGCAGTTGGGGTCAATTATGTTGGGCAAGCAGTTACATGTCAATATTCTGAAACTTGGCCTCGATTCCCATGTGTATGTTAGGAACACGCTTATTCATATGTATGGCAGGTTAAAAGACGTCAAACTAGCACGCAACCTGTTTGATGAAATGCCCAAACCAGGTTTGGTAGCTTGGAATACAGTTATCGACTGTCATGTCTCTTGTGGGATGTACAACGAAGCACTTGCCTTGTTTCTTCAAATGTTGCAGAGTGGCGTAGAGCCTGACGAAGCCACACTGGTTGTGACGGTCTCAGCATGTTCTGCACTGGGTGCACTGGACTTTGGGAGGTGGGTTCATTCCCATGTGAAGGATAACGATAGAGGAAAGACTATTGCCGTTTTCAATTCATTGATCGACATGTACGCCAAGTGTGGAGCAGTTGAAGACGCCCGTGAGATGTTTAATGCAACAAGTGGCAAGAACATAGTAACATGGAACACAATGATCATGGGATTAGCTACACACGGCGATGTAGAGGATGCACTGACATTATTCTCAAACATGTTAGCAGAGAAGATTGTGACTCCTGATGGCGTGACATTCTTGGGAGTATTGTGTGCTTGTAACCATGGAGGAAAGGTGGAGGAAGGGAGGAGATATTTTGATCTAATGACCAAACACTGCAATATCCAACCAACAGTTAAGCATTATGGATCAATGGTGGACATTCTGGGACGAGCTGGGTTTGTAGAAGAAGCTTATCAGCTGATACGGAGTATGCCAATGGAGTGTAATGCTGTTATATGGAGAACATTACTTGCAGCCTGTCGGATGCATGGAAATGTTAAGCTCGGGGAGAGAGTGAGGAGCCATGTTCTTGAGATAGAGCCAGATCATAGTAGTGATTATGTTCTTCTTGCAAATATATATGCAAGCTCTGGTCAATGGAATGAAATGATGAAGGTCAGAAAATCAATGCAACGAAAAGGAGTGCAGAAACCAGAGCCCGGTAATAGTTTTTTGGAAATTAATCCATGCAGGAAGTTGGAGATGGAGACTGTTGAGAATTATAACAATGCAGAAACAAACTAA

Protein sequence

MIVLNGGKSNLARSLFSRVEIKFPHFQLLLPKFIWSSDRKTPTDAIPNGCYFSKEQRFLSLFKQCSAVKDLNQLHARIIQSGFDQNLFVLGKLIEFCAVSAHGDMNYAVAVFNRIENPDGFLWNTMIRGFGRISNLPKAFEFYKRMLEKGIAADNFTFSFLLKICGQLGSIMLGKQLHVNILKLGLDSHVYVRNTLIHMYGRLKDVKLARNLFDEMPKPGLVAWNTVIDCHVSCGMYNEALALFLQMLQSGVEPDEATLVVTVSACSALGALDFGRWVHSHVKDNDRGKTIAVFNSLIDMYAKCGAVEDAREMFNATSGKNIVTWNTMIMGLATHGDVEDALTLFSNMLAEKIVTPDGVTFLGVLCACNHGGKVEEGRRYFDLMTKHCNIQPTVKHYGSMVDILGRAGFVEEAYQLIRSMPMECNAVIWRTLLAACRMHGNVKLGERVRSHVLEIEPDHSSDYVLLANIYASSGQWNEMMKVRKSMQRKGVQKPEPGNSFLEINPCRKLEMETVENYNNAETN
Homology
[Close]
BLAST of Carg17953 vs. NCBI nr
Match: XP_022921850.1 (pentatricopeptide repeat-containing protein At1g59720, chloroplastic/mitochondrial-like [Cucurbita moschata])

HSP 1 Score: 854.0 bits (2205), Expect = 2.7e-244
Identity = 466/523 (89.10%), Postives = 466/523 (89.10%), Query Frame = 0 

Query: 1   MIVLNGGKSNLARSLFSRVEIKFPHFQLLLPKFIWSSDRKTPTDAIPNGCYFSKEQRFLS 60
           MIVLNGGKSNLARSLFSRVEIKFPHFQLLLPKFIWSSDRKTPTDAIPNGCYFSKEQRFLS
Sbjct: 1   MIVLNGGKSNLARSLFSRVEIKFPHFQLLLPKFIWSSDRKTPTDAIPNGCYFSKEQRFLS 60

Query: 61  LFKQCSAVKDLNQLHARIIQSGFDQNLFVLGKLIEFCAVSAHGDMNYAVAVFNRIENPDG 120
           LFKQCSAVKDLNQLHARIIQSGFDQNLFVLGKLIEFCAVSAHGDMNYAVAVFNRIENPDG
Sbjct: 61  LFKQCSAVKDLNQLHARIIQSGFDQNLFVLGKLIEFCAVSAHGDMNYAVAVFNRIENPDG 120

Query: 121 FLWNTMIRGFGRISNLPKAFEFYKRMLEKGIAADNFTFXXXXXXXXXXXXXXXXXXXXXX 180
           FLWNTMIRGFGRISNLPKAFEFYKRMLEKGIAADNFTF                      
Sbjct: 121 FLWNTMIRGFGRISNLPKAFEFYKRMLEKGIAADNFTFSFLLKICGQLGSIMLGKQLHVN 180

Query: 181 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDEMPKPGLVAWNTVIDCHVSCGMYNEA 240
                                            DEMPKPGLVAWNTVIDCHVSCGMYNEA
Sbjct: 181 ILKLGLDSHVYVRNTLIHMYGGLKDVKLARNLFDEMPKPGLVAWNTVIDCHVSCGMYNEA 240

Query: 241 LALFLQMLQSGVEPDEATLVVTVSACSALGALDFGRWVHSHVKDNDRGKTIAVFNSLIDM 300
           LALFLQMLQSGVEPDEATLVVTVSACSALGALDFGRWVHSHVKDND GKTIAVFNSLIDM
Sbjct: 241 LALFLQMLQSGVEPDEATLVVTVSACSALGALDFGRWVHSHVKDNDSGKTIAVFNSLIDM 300

Query: 301 YAKCGAVEDAREMFNATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPDGVT 360
           YAKCGAVEDAREMFNA XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPDGVT
Sbjct: 301 YAKCGAVEDAREMFNAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPDGVT 360

Query: 361 FLGVLCACNHGGKVEEGRRYFDLMTKHCNIQPTVKHYGSMVDILGRAGFVEEAYQLIRSM 420
           FLGVLCACNHGGKVEEGRRYFDLMTKHCNIQPTVKHYGSMVDILGRAGFVEEAYQLIRSM
Sbjct: 361 FLGVLCACNHGGKVEEGRRYFDLMTKHCNIQPTVKHYGSMVDILGRAGFVEEAYQLIRSM 420

Query: 421 PMECNAVIWRTLLAACRMHGNVKLGERVRSHVLEIEPDHSSDYVLLANIYASSGQWNEMM 480
           PMECNAVIWRTLLAACRMHGNVKLGERVRSHVLEIEPDHSSDYVLLANIYASSGQWNEMM
Sbjct: 421 PMECNAVIWRTLLAACRMHGNVKLGERVRSHVLEIEPDHSSDYVLLANIYASSGQWNEMM 480

Query: 481 KVRKSMQRKGVQKPEPGNSFLEINPCRKLEMETVENYNNAETN 524
           KVRKSMQRKGVQKPEPGNSFLEINPCRKLEMETVENYNNAETN
Sbjct: 481 KVRKSMQRKGVQKPEPGNSFLEINPCRKLEMETVENYNNAETN 523

[Close]
BLAST of Carg17953 vs. NCBI nr
Match: XP_023516362.1 (pentatricopeptide repeat-containing protein At4g21065-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 837.8 bits (2163), Expect = 2.0e-239
Identity = 499/523 (95.41%), Postives = 504/523 (96.37%), Query Frame = 0 

Query: 1   MIVLNGGKSNLARSLFSRVEIKFPHFQLLLPKFIWSSDRKTPTDAIPNGCYFSKEQRFLS 60
           MIVLNGGKSNLARSL SRVEIKFPHFQLLLPKFIWSSDRKTPT+AIPNG YFSKEQRFLS
Sbjct: 1   MIVLNGGKSNLARSLCSRVEIKFPHFQLLLPKFIWSSDRKTPTEAIPNGSYFSKEQRFLS 60

Query: 61  LFKQCSAVKDLNQLHARIIQSGFDQNLFVLGKLIEFCAVSAHGDMNYAVAVFNRIENPDG 120
           LFKQCSAVKDLNQ+HAR I+SGFDQNLFVLGKLIEFCAVSAHGDMNYAVAVFNRIENPDG
Sbjct: 61  LFKQCSAVKDLNQVHARTIRSGFDQNLFVLGKLIEFCAVSAHGDMNYAVAVFNRIENPDG 120

Query: 121 FLWNTMIRGFGRISNLPKAFEFYKRMLEKGIAADNFTFXXXXXXXXXXXXXXXXXXXXXX 180
           FLWNTMIRGFGRISNLPKAFEFYKRMLEKGIAADNFTF           XXXXXXXXXXX
Sbjct: 121 FLWNTMIRGFGRISNLPKAFEFYKRMLEKGIAADNFTFSFLLKISGQLGXXXXXXXXXXX 180

Query: 181 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDEMPKPGLVAWNTVIDCHVSCGMYNEA 240
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXX   DEMPKPGLVAWNTVIDCHVSCGMYNEA
Sbjct: 181 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNLFDEMPKPGLVAWNTVIDCHVSCGMYNEA 240

Query: 241 LALFLQMLQSGVEPDEATLVVTVSACSALGALDFGRWVHSHVKDNDRGKTIAVFNSLIDM 300
           LALFLQMLQSGVEPDEATLVVTVSACSALGALDFGRWVHSHVK NDRGKTIAVFNSLIDM
Sbjct: 241 LALFLQMLQSGVEPDEATLVVTVSACSALGALDFGRWVHSHVKHNDRGKTIAVFNSLIDM 300

Query: 301 YAKCGAVEDAREMFNATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPDGVT 360
           YAKCGAVE+AREMFNATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPDGVT
Sbjct: 301 YAKCGAVEEAREMFNATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPDGVT 360

Query: 361 FLGVLCACNHGGKVEEGRRYFDLMTKHCNIQPTVKHYGSMVDILGRAGFVEEAYQLIRSM 420
           FLGVLCACNHGGKVEEGRRYFDLMTKHCNIQPTVKHYGSMVDILGRAGFVEEAYQLIRSM
Sbjct: 361 FLGVLCACNHGGKVEEGRRYFDLMTKHCNIQPTVKHYGSMVDILGRAGFVEEAYQLIRSM 420

Query: 421 PMECNAVIWRTLLAACRMHGNVKLGERVRSHVLEIEPDHSSDYVLLANIYASSGQWNEMM 480
           PMECNAVIWRTLLAACRMHGNVKLGERVRSHVLEIEPDHSSDYVLLANIYASSGQWNEMM
Sbjct: 421 PMECNAVIWRTLLAACRMHGNVKLGERVRSHVLEIEPDHSSDYVLLANIYASSGQWNEMM 480

Query: 481 KVRKSMQRKGVQKPEPGNSFLEINPCRKLEMETVENYNNAETN 524
           KVRKSMQRKGVQKPEPGNSFLEINPCRKLEM+TVENYNNAE N
Sbjct: 481 KVRKSMQRKGVQKPEPGNSFLEINPCRKLEMDTVENYNNAERN 523

[Close]
BLAST of Carg17953 vs. NCBI nr
Match: XP_022987183.1 (pentatricopeptide repeat-containing protein At1g59720, chloroplastic/mitochondrial-like [Cucurbita maxima] >XP_022987184.1 pentatricopeptide repeat-containing protein At1g59720, chloroplastic/mitochondrial-like [Cucurbita maxima])

HSP 1 Score: 800.0 bits (2065), Expect = 4.7e-228
Identity = 499/523 (95.41%), Postives = 502/523 (95.98%), Query Frame = 0 

Query: 1   MIVLNGGKSNLARSLFSRVEIKFPHFQLLLPKFIWSSDRKTPTDAIPNGCYFSKEQRFLS 60
           MIVLNGGKSNLA SL SRVEIKFPHFQLLLPK+IWSSD KTPTD IPNG YFSKEQRFLS
Sbjct: 1   MIVLNGGKSNLALSLCSRVEIKFPHFQLLLPKYIWSSDPKTPTDTIPNGSYFSKEQRFLS 60

Query: 61  LFKQCSAVKDLNQLHARIIQSGFDQNLFVLGKLIEFCAVSAHGDMNYAVAVFNRIENPDG 120
           LFKQCSAVKDLNQLHAR IQSGFDQNLFVLGKLIEFCAVSAHGDMNYAVAVFNRIENPDG
Sbjct: 61  LFKQCSAVKDLNQLHARTIQSGFDQNLFVLGKLIEFCAVSAHGDMNYAVAVFNRIENPDG 120

Query: 121 FLWNTMIRGFGRISNLPKAFEFYKRMLEKGIAADNFTFXXXXXXXXXXXXXXXXXXXXXX 180
           FLWNTMIRGFGRISNLPKAFEFYKRMLEKGIAA     XXXXXXXXXXXXXXXXXXXXXX
Sbjct: 121 FLWNTMIRGFGRISNLPKAFEFYKRMLEKGIAAXXXXXXXXXXXXXXXXXXXXXXXXXXX 180

Query: 181 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDEMPKPGLVAWNTVIDCHVSCGMYNEA 240
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX        VAWNTVIDCHVSCGMYNEA
Sbjct: 181 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVAWNTVIDCHVSCGMYNEA 240

Query: 241 LALFLQMLQSGVEPDEATLVVTVSACSALGALDFGRWVHSHVKDNDRGKTIAVFNSLIDM 300
           LALFLQMLQSGVEPDEATLVVTVSACSALGALDFGRWVHSHVK NDRGKTIAVFNSLIDM
Sbjct: 241 LALFLQMLQSGVEPDEATLVVTVSACSALGALDFGRWVHSHVKHNDRGKTIAVFNSLIDM 300

Query: 301 YAKCGAVEDAREMFNATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPDGVT 360
           YAKCGAVEDAREMFNATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPDGVT
Sbjct: 301 YAKCGAVEDAREMFNATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPDGVT 360

Query: 361 FLGVLCACNHGGKVEEGRRYFDLMTKHCNIQPTVKHYGSMVDILGRAGFVEEAYQLIRSM 420
           FLGVLCACNHGGKVEEGRRYFDLMTKHC+IQPTVKHYGSMVDILGRAGFVEEAYQLIRSM
Sbjct: 361 FLGVLCACNHGGKVEEGRRYFDLMTKHCDIQPTVKHYGSMVDILGRAGFVEEAYQLIRSM 420

Query: 421 PMECNAVIWRTLLAACRMHGNVKLGERVRSHVLEIEPDHSSDYVLLANIYASSGQWNEMM 480
           PMECNAVIWRTLLAACRMHGNVKLGERVRSHVLEIEPDHSSDYVLLANIYASSGQWNEMM
Sbjct: 421 PMECNAVIWRTLLAACRMHGNVKLGERVRSHVLEIEPDHSSDYVLLANIYASSGQWNEMM 480

Query: 481 KVRKSMQRKGVQKPEPGNSFLEINPCRKLEMETVENYNNAETN 524
           KVRKSMQRKGVQKPEPGNSFLEINPCRKLEM+TVENYNNAE N
Sbjct: 481 KVRKSMQRKGVQKPEPGNSFLEINPCRKLEMDTVENYNNAERN 523

[Close]
BLAST of Carg17953 vs. NCBI nr
Match: XP_022135209.1 (pentatricopeptide repeat-containing protein At2g02980, chloroplastic-like [Momordica charantia])

HSP 1 Score: 714.1 bits (1842), Expect = 3.4e-202
Identity = 385/521 (73.90%), Postives = 412/521 (79.08%), Query Frame = 0 

Query: 1   MIVLNGGKSNLARSLFSRVEIKFPHFQLLLPKFI---WSSDRKTPTDAIPNGCYFSKEQR 60
           MIV+   KSN A SL S++ IKFPHF LL PKFI   +SSD +  TDA PNG  F+KE+R
Sbjct: 1   MIVIARRKSNFAVSLCSQIRIKFPHFPLLFPKFIFSFFSSDSEVTTDARPNGRDFAKEKR 60

Query: 61  FLSLFKQCSAVKDLNQLHARIIQSGFDQNLFVLGKLIEFCAVSAHGDMNYAVAVFNRIEN 120
            LSLFKQCS VKDLNQ+HARI+Q+GFDQNLFV+ KLIEFCAVS HGDMNYAV  FNRIEN
Sbjct: 61  LLSLFKQCSTVKDLNQIHARIVQTGFDQNLFVIAKLIEFCAVSDHGDMNYAVLAFNRIEN 120

Query: 121 PDGFLWNTMIRGFGRISNLPKAFEFYKRMLEKGIAADNFTFXXXXXXXXXXXXXXXXXXX 180
           PDGFLWNTMIRGFGRIS L +AFEFYKRMLEKGI+ADNFTF                   
Sbjct: 121 PDGFLWNTMIRGFGRISKLQEAFEFYKRMLEKGISADNFTFSFLLKISGQMGSLILGKQL 180

Query: 181 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDEMPKPGLVAWNTVIDCHVSCGMY 240
                                                EMPKP LVAWNTVIDCHVSCGMY
Sbjct: 181 HVNILKLGLESHVYVRNTLIHMYGMLKDIKTARNLFVEMPKPDLVAWNTVIDCHVSCGMY 240

Query: 241 NEALALFLQMLQSGVEPDEATLVVTVSACSALGALDFGRWVHSHVKDNDRGKTIAVFNSL 300
            EAL LF +M QSG+EPDEATLVVTVSACSALGALD GRWVHSHVK NDRGKT+AVFNSL
Sbjct: 241 EEALGLFFRMFQSGIEPDEATLVVTVSACSALGALDSGRWVHSHVKHNDRGKTVAVFNSL 300

Query: 301 IDMYAKCGAVEDAREMFNATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPD 360
           IDMYAKCGAVEDA ++FN        XXXXXXXXXXXXXXXXXXXXXXXXX       PD
Sbjct: 301 IDMYAKCGAVEDALDIFNTMGSKNRVXXXXXXXXXXXXXXXXXXXXXXXXXLTEKLENPD 360

Query: 361 GVTFLGVLCACNHGGKVEEGRRYFDLMTKHCNIQPTVKHYGSMVDILGRAGFVEEAYQLI 420
            VTFLGVLCACNHGG+VEEGRRYFDLMTKH N+QPT+KHYGSMVD+LGRAGFVEEAYQLI
Sbjct: 361 DVTFLGVLCACNHGGEVEEGRRYFDLMTKHFNVQPTLKHYGSMVDMLGRAGFVEEAYQLI 420

Query: 421 RSMPMECNAVIWRTLLAACRMHGNVKLGERVRSHVLEIEPDHSSDYVLLANIYASSGQWN 480
           RSMPMECNAVIWRTLLAACR+HGNVKLGERVRSHVLEIEPDHSSDYVLLAN+YA+SGQWN
Sbjct: 421 RSMPMECNAVIWRTLLAACRLHGNVKLGERVRSHVLEIEPDHSSDYVLLANMYATSGQWN 480

Query: 481 EMMKVRKSMQRKGVQKPEPGNSFLEINPCRKLEMETVENYN 519
           EMMK+RKSMQRKGVQKPEPGNS+LEINP RKLEMETVEN N
Sbjct: 481 EMMKIRKSMQRKGVQKPEPGNSYLEINPHRKLEMETVENCN 521

[Close]
BLAST of Carg17953 vs. NCBI nr
Match: XP_008453215.2 (PREDICTED: pentatricopeptide repeat-containing protein At1g59720, chloroplastic/mitochondrial [Cucumis melo])

HSP 1 Score: 673.3 bits (1736), Expect = 6.6e-190
Identity = 395/505 (78.22%), Postives = 420/505 (83.17%), Query Frame = 0 

Query: 1   MIVLNGGKSNLARSLFSRVEIKFPHFQLLLPKFIWSSDRKTPTDAIPNGCYFSKEQRFLS 60
           MI++NG K NLA SL S  +IKF  FQL++P+FIW+S  KT TD IPNG YF+KEQ  + 
Sbjct: 1   MILINGRKLNLALSLCSHGKIKFSKFQLVVPRFIWNSGPKTATDTIPNGGYFAKEQNLMF 60

Query: 61  LFKQCSAVKDLNQLHARIIQSGFDQNLFVLGKLIEFCAVSAHGDMNYAVAVFNRIENPDG 120
           LFKQCS +K LNQLHARII+ GFDQNLFV+GKLI+FCAVS HGDMNYAV VF+RIENPDG
Sbjct: 61  LFKQCSTLKHLNQLHARIIRLGFDQNLFVIGKLIDFCAVSDHGDMNYAVDVFDRIENPDG 120

Query: 121 FLWNTMIRGFGRISNLPKAFEFYKRMLEKGIAADNFTFXXXXXXXXXXXXXXXXXXXXXX 180
           FLWNTMIRGFGRI  L  AFEFYKRMLEKGI       XXXXXXXXXXXXXXXXXXXXXX
Sbjct: 121 FLWNTMIRGFGRIRKLLMAFEFYKRMLEKGIEXXXXXXXXXXXXXXXXXXXXXXXXXXXX 180

Query: 181 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDEMPKPGLVAWNTVIDCHVSCGMYNEA 240
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX E+PK  LVAWN VIDCHVSCGMYNEA
Sbjct: 181 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXELPKTDLVAWNAVIDCHVSCGMYNEA 240

Query: 241 LALFLQMLQSGVEPDEATLVVTVSACSALGALDFGRWVHSHVKDNDRGKTIAVFNSLIDM 300
           L LFLQMLQSGVEPDEATLVVTVSACSALGALDFGRW+HSHV  NDRGKT AVFNSLIDM
Sbjct: 241 LDLFLQMLQSGVEPDEATLVVTVSACSALGALDFGRWIHSHVNSNDRGKTTAVFNSLIDM 300

Query: 301 YAKCGAVEDAREMFNATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPDGVT 360
           YAKCGAV+ AREMFNA                                       PD VT
Sbjct: 301 YAKCGAVDYAREMFNAMSGKNVVTWNTMIMGLATHGDAEDALTLFSNMLTEKVETPDAVT 360

Query: 361 FLGVLCACNHGGKVEEGRRYFDLMTKHCNIQPTVKHYGSMVDILGRAGFVEEAYQLIRSM 420
           FL VLCACNHGGKVEEGRRYFDLMTKH NIQPT+KHYGSMVDILGRAGFVEEAYQLI+SM
Sbjct: 361 FLAVLCACNHGGKVEEGRRYFDLMTKHFNIQPTLKHYGSMVDILGRAGFVEEAYQLIKSM 420

Query: 421 PMECNAVIWRTLLAACRMHGNVKLGERVRSHVLEIEPDHSSDYVLLANIYASSGQWNEMM 480
           PMECNAVIWRTLLAAC+MHGNVKLGERV SHVLEIEPDHSSDYVLLAN+YASSGQWNEM+
Sbjct: 421 PMECNAVIWRTLLAACQMHGNVKLGERVSSHVLEIEPDHSSDYVLLANMYASSGQWNEMI 480

Query: 481 KVRKSMQRKGVQKPEPGNSFLEINP 506
           K RKSMQ+KGV+KPEPGNS+LEINP
Sbjct: 481 KTRKSMQQKGVEKPEPGNSYLEINP 505

[Close]
BLAST of Carg17953 vs. TAIR10
Match: AT1G59720.1 (Tetratricopeptide repeat (TPR)-like superfamily protein)

HSP 1 Score: 263.5 bits (672), Expect = 2.8e-70
Identity = 158/466 (33.91%), Postives = 237/466 (50.86%), Query Frame = 0 

Query: 56  QRFLSLFKQCSAVKDLNQLHARIIQSGFDQ---NLFVLGKLIEFCAVSAHGDMNYAVAVF 115
           QR  SL + CS +  L QLHA  +++ + +    LF+ GK+++    S+  D+NYA  VF
Sbjct: 49  QRIFSLAETCSDMSQLKQLHAFTLRTTYPEEPATLFLYGKILQLS--SSFSDVNYAFRVF 108

Query: 116 NRIENPDGFLWNTMIRGFGR-ISNLPKAFEFYKRMLEKGIAA-DNFTFXXXXXXXXXXXX 175
           + IEN   F+WNT+IR     +S   +AF  Y++MLE+G ++ D  TF            
Sbjct: 109 DSIENHSSFMWNTLIRACAHDVSRKEEAFMLYRKMLERGESSPDKHTFPFVLKACAYIFG 168

Query: 176 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDEMPKPGLVAWNTVIDC 235
                                                      DEMP+  LV+WN++ID 
Sbjct: 169 FSEGKQVHCQIVKHGFGGDVYVNNGLIHLYGSCGCLDLARKVFDEMPERSLVSWNSMIDA 228

Query: 236 HVSCGMYNEALALFLQMLQSGVEPDEATLVVTVSACSALGALDFGRWVHSHVK---DNDR 295
            V  G Y+ AL LF +M Q   EPD  T+   +SAC+ LG+L  G W H+ +    D D 
Sbjct: 229 LVRFGEYDSALQLFREM-QRSFEPDGYTMQSVLSACAGLGSLSLGTWAHAFLLRKCDVDV 288

Query: 296 GKTIAVFNSLIDMYAKCGAVEDAREMFNA-TXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 355
              + V NSLI+MY KCG++  A ++F                                 
Sbjct: 289 AMDVLVKNSLIEMYCKCGSLRMAEQVFQGMQKRDLASWNAMILGFATHGRAEEAMNFFDR 348

Query: 356 XXXXXXXXXPDGVTFLGVLCACNHGGKVEEGRRYFDLMTKHCNIQPTVKHYGSMVDILGR 415
                    P+ VTF+G+L ACNH G V +GR+YFD+M +   I+P ++HYG +VD++ R
Sbjct: 349 MVDKRENVRPNSVTFVGLLIACNHRGFVNKGRQYFDMMVRDYCIEPALEHYGCIVDLIAR 408

Query: 416 AGFVEEAYQLIRSMPMECNAVIWRTLL-AACRMHGNVKLGERVRSHVLEIEPDHSSD--- 475
           AG++ EA  ++ SMPM+ +AVIWR+LL A C+   +V+L E +  +++  + D+ S    
Sbjct: 409 AGYITEAIDMVMSMPMKPDAVIWRSLLDACCKKGASVELSEEIARNIIGTKEDNESSNGN 468

Query: 476 ----YVLLANIYASSGQWNEMMKVRKSMQRKGVQKPEPGNSFLEIN 505
               YVLL+ +YAS+ +WN++  VRK M   G++K EPG S +EIN
Sbjct: 469 CSGAYVLLSRVYASASRWNDVGIVRKLMSEHGIRK-EPGCSSIEIN 510

[Close]
BLAST of Carg17953 vs. TAIR10
Match: AT2G02980.1 (Pentatricopeptide repeat (PPR) superfamily protein)

HSP 1 Score: 262.3 bits (669), Expect = 6.3e-70
Identity = 174/451 (38.58%), Postives = 254/451 (56.32%), Query Frame = 0 

Query: 56  QRFLSLFKQCSAVKDLNQLHARIIQSGFDQNLFVLGKLIEFCAVS-AHGDMNYAVAVFNR 115
           Q  + L  +C+++++L Q+ A  I+S  +   FV  KLI FC  S     M+YA  +F  
Sbjct: 30  QNPILLISKCNSLRELMQIQAYAIKSHIEDVSFV-AKLINFCTESPTESSMSYARHLFEA 89

Query: 116 IENPDGFLWNTMIRGFGRISNLPKAFEFYKRMLEKGIAADNFTFXXXXXXXXXXXXXXXX 175
           +  PD  ++N+M RG+ R +N  + F  +  +LE GI  DN+TF                
Sbjct: 90  MSEPDIVIFNSMARGYSRFTNPLEVFSLFVEILEDGILPDNYTFPSLLKACAVAKALEEG 149

Query: 176 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDEMPKPGLVAWNTVIDCHVSC 235
                                                  D + +P +V +N +I  +   
Sbjct: 150 RQLHCLSMKLGLDDNVYVCPTLINMYTECEDVDSARCVFDRIVEPCVVCYNAMITGYARR 209

Query: 236 GMYNEALALFLQMLQSGVEPDEATLVVTVSACSALGALDFGRWVHSHVKDNDRGKTIAVF 295
              NEAL+LF +M    ++P+E TL+  +S+C+ LG+LD G+W+H + K +   K + V 
Sbjct: 210 NRPNEALSLFREMQGKYLKPNEITLLSVLSSCALLGSLDLGKWIHKYAKKHSFCKYVKVN 269

Query: 296 NSLIDMYAKCGAVEDAREMFNATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 355
            +LIDM+AKCG+++DA  +F             XXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 270 TALIDMFAKCGSLDDAVSIFE-KMRYKDTQAWSXXXXXXXXXXXXXXXXXXXXXXXXXXX 329

Query: 356 XPDGVTFLGVLCACNHGGKVEEGRRYFDLMTKHCNIQPTVKHYGSMVDILGRAGFVEEAY 415
            PD +TFLG+L AC+H G+VEEGR+YF  M     I P++KHYGSMVD+L RAG +E+AY
Sbjct: 330 QPDEITFLGLLNACSHTGRVEEGRKYFSQMVSKFGIVPSIKHYGSMVDLLSRAGNLEDAY 389

Query: 416 QLIRSMPMECNAVIWRTLLAACRMHGNVKLGERVRSHVLEIEPDHSSDYVLLANIYASSG 475
           + I  +P+    ++WR LLAAC  H N+ L E+V   + E++  H  DYV+L+N+YA + 
Sbjct: 390 EFIDKLPISPTPMLWRILLAACSSHNNLDLAEKVSERIFELDDSHGGDYVILSNLYARNK 449

Query: 476 QWNEMMKVRKSMQ-RKGVQKPEPGNSFLEIN 505
           +W  +  +RK M+ RK V+   PG S +E+N
Sbjct: 450 KWEYVDSLRKVMKDRKAVK--VPGCSSIEVN 476

[Close]
BLAST of Carg17953 vs. TAIR10
Match: AT1G31920.1 (Tetratricopeptide repeat (TPR)-like superfamily protein)

HSP 1 Score: 238.4 bits (607), Expect = 9.8e-63
Identity = 144/486 (29.63%), Postives = 229/486 (47.12%), Query Frame = 0 

Query: 21  IKFPHFQLLLPKFIWSSDRKTPTDAIPNGCYFSKEQRFLSLFKQCSAVKDLNQLHARIIQ 80
           IK P  Q LL     S D  T    + N  +  KEQ  L L K+C  + +  Q+HAR I+
Sbjct: 2   IKAPILQSLLA----SRDDLTHNPEVNN--FGGKEQECLYLLKRCHNIDEFKQVHARFIK 61

Query: 81  -SGFDQNLFVLGKLIEFCAVSA-HGDMNYAVAVFNRIENPDGFLWNTMIRGFGRISNLPK 140
            S F  + F    ++  CA S     MNYA ++F  I++P  F +NTMIRG+  + +  +
Sbjct: 62  LSLFYSSSFSASSVLAKCAHSGWENSMNYAASIFRGIDDPCTFDFNTMIRGYVNVMSFEE 121

Query: 141 AFEFYKRMLEKGIAADNFTFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 200
           A  FY  M+++G   DNFT+                                        
Sbjct: 122 ALCFYNEMMQRGNEPDNFTYPCLLKACTRLKSIREGKQIHGQVFKLGLEADVFVQNSLIN 181

Query: 201 XXXXXXXXXXXXXXXDEMPKPGLVAWNTVIDCHVSCGMYNEALALFLQML-QSGVEPDEA 260
                          +++      +W++++      GM++E L LF  M  ++ ++ +E+
Sbjct: 182 MYGRCGEMELSSAVFEKLESKTAASWSSMVSARAGMGMWSECLLLFRGMCSETNLKAEES 241

Query: 261 TLVVTVSACSALGALDFGRWVHSHVKDNDRGKTIAVFNSLIDMYAKCGAVEDAREMFNAT 320
            +V  + AC+  GAL+ G  +H  +  N     I V  SL+DMY KCG ++ A  +F   
Sbjct: 242 GMVSALLACANTGALNLGMSIHGFLLRNISELNIIVQTSLVDMYVKCGCLDKALHIFQ-K 301

Query: 321 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPDGVTFLGVLCACNHGGKVEEG 380
                                                 PD V ++ VL AC+H G V+EG
Sbjct: 302 MEKRNNLTYSAMISGLALHGEGESALRMFSKMIKEGLEPDHVVYVSVLNACSHSGLVKEG 361

Query: 381 RRYFDLMTKHCNIQPTVKHYGSMVDILGRAGFVEEAYQLIRSMPMECNAVIWRTLLAACR 440
           RR F  M K   ++PT +HYG +VD+LGRAG +EEA + I+S+P+E N VIWRT L+ CR
Sbjct: 362 RRVFAEMLKEGKVEPTAEHYGCLVDLLGRAGLLEEALETIQSIPIEKNDVIWRTFLSQCR 421

Query: 441 MHGNVKLGERVRSHVLEIEPDHSSDYVLLANIYASSGQWNEMMKVRKSMQRKGVQKPEPG 500
           +  N++LG+     +L++   +  DY+L++N+Y+    W+++ + R  +  KG+ K  PG
Sbjct: 422 VRQNIELGQIAAQELLKLSSHNPGDYLLISNLYSQGQMWDDVARTRTEIAIKGL-KQTPG 479

Query: 501 NSFLEI 504
            S +E+
Sbjct: 482 FSIVEL 479

[Close]
BLAST of Carg17953 vs. TAIR10
Match: AT1G08070.1 (Tetratricopeptide repeat (TPR)-like superfamily protein)

HSP 1 Score: 231.9 bits (590), Expect = 9.2e-61
Identity = 115/293 (39.25%), Postives = 176/293 (60.07%), Query Frame = 0 

Query: 214 DEMPKPGLVAWNTVIDCHVSCGMYNEALALFLQMLQSGVEPDEATLVVTVSACSALGALD 273
           + +P   +++WNT+I  +    +Y EAL LF +ML+SG  P++ T++  + AC+ LGA+D
Sbjct: 325 ERLPYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGETPNDVTMLSILPACAHLGAID 384

Query: 274 FGRWVHSHVKDNDRGKTIA--VFNSLIDMYAKCGAVEDAREMFNATXXXXXXXXXXXXXX 333
            GRW+H ++    +G T A  +  SLIDMYAKCG +E A ++FN +              
Sbjct: 385 IGRWIHVYIDKRLKGVTNASSLRTSLIDMYAKCGDIEAAHQVFN-SILHKSLSSWNAMIF 444

Query: 334 XXXXXXXXXXXXXXXXXXXXXXXXPDGVTFLGVLCACNHGGKVEEGRRYFDLMTKHCNIQ 393
                                   PD +TF+G+L AC+H G ++ GR  F  MT+   + 
Sbjct: 445 GFAMHGRADASFDLFSRMRKIGIQPDDITFVGLLSACSHSGMLDLGRHIFRTMTQDYKMT 504

Query: 394 PTVKHYGSMVDILGRAGFVEEAYQLIRSMPMECNAVIWRTLLAACRMHGNVKLGERVRSH 453
           P ++HYG M+D+LG +G  +EA ++I  M ME + VIW +LL AC+MHGNV+LGE    +
Sbjct: 505 PKLEHYGCMIDLLGHSGLFKEAEEMINMMEMEPDGVIWCSLLKACKMHGNVELGESFAEN 564

Query: 454 VLEIEPDHSSDYVLLANIYASSGQWNEMMKVRKSMQRKGVQKPEPGNSFLEIN 505
           +++IEP++   YVLL+NIYAS+G+WNE+ K R  +  KG++K  PG S +EI+
Sbjct: 565 LIKIEPENPGSYVLLSNIYASAGRWNEVAKTRALLNDKGMKK-VPGCSSIEID 615

[Close]
BLAST of Carg17953 vs. TAIR10
Match: AT3G56550.1 (Pentatricopeptide repeat (PPR) superfamily protein)

HSP 1 Score: 228.4 bits (581), Expect = 1.0e-59
Identity = 132/452 (29.20%), Postives = 221/452 (48.89%), Query Frame = 0 

Query: 54  KEQRFLSLFKQCSAVKDLNQLHARIIQSGFDQNLFVLGKLIEFCAVSAHGDMNYAVAVFN 113
           K +  + + + C+++K L ++H+ +I +G   +  +   L+ FCAVS  G +++A  +F+
Sbjct: 4   KARVIVRMLQGCNSMKKLRKIHSHVIINGLQHHPSIFNHLLRFCAVSVTGSLSHAQLLFD 63

Query: 114 RIE-NPDGFLWNTMIRGFGRISNLPKAFEFYKRMLEKGIA-ADNFTFXXXXXXXXXXXXX 173
             + +P    WN +IRGF   S+   +  FY RML   ++  D FTF             
Sbjct: 64  HFDSDPSTSDWNYLIRGFSNSSSPLNSILFYNRMLLSSVSRPDLFTFNFALKSCERIKSI 123

Query: 174 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDEMPKPGLVAWNTVIDCH 233
                                                     DEMP   LV+WN +I C 
Sbjct: 124 PKCLEIHGSVIRSGFLDDAIVATSLVRCYSANGSVEIASKVFDEMPVRDLVSWNVMICCF 183

Query: 234 VSCGMYNEALALFLQMLQSGVEPDEATLVVTVSACSALGALDFGRWVHSHVKDNDRGKTI 293
              G++N+AL+++ +M   GV  D  TLV  +S+C+ + AL+ G  +H    D      +
Sbjct: 184 SHVGLHNQALSMYKRMGNEGVCGDSYTLVALLSSCAHVSALNMGVMLHRIACDIRCESCV 243

Query: 294 AVFNSLIDMYAKCGAVEDAREMFNATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 353
            V N+LIDMYAKCG++E+A  +FN                                    
Sbjct: 244 FVSNALIDMYAKCGSLENAIGVFNG-MRKRDVLTWNSMIIGYGVHGHGVEAISFFRKMVA 303

Query: 354 XXXXPDGVTFLGVLCACNHGGKVEEGRRYFDLMTKHCNIQPTVKHYGSMVDILGRAGFVE 413
               P+ +TFLG+L  C+H G V+EG  +F++M+   ++ P VKHYG MVD+ GRAG +E
Sbjct: 304 SGVRPNAITFLGLLLGCSHQGLVKEGVEHFEIMSSQFHLTPNVKHYGCMVDLYGRAGQLE 363

Query: 414 EAYQLIRSMPMECNAVIWRTLLAACRMHGNVKLGERVRSHVLEIEPDHSSDYVLLANIYA 473
            + ++I +     + V+WRTLL +C++H N++LGE     ++++E  ++ DYVL+ +IY+
Sbjct: 364 NSLEMIYASSCHEDPVLWRTLLGSCKIHRNLELGEVAMKKLVQLEAFNAGDYVLMTSIYS 423

Query: 474 SSGQWNEMMKVRKSMQRKGVQKPEPGNSFLEI 504
           ++        +RK ++   +Q   PG S++EI
Sbjct: 424 AANDAQAFASMRKLIRSHDLQ-TVPGWSWIEI 453

[Close]
BLAST of Carg17953 vs. Swiss-Prot
Match: sp|Q0WQW5|PPR85_ARATH (Pentatricopeptide repeat-containing protein At1g59720, chloroplastic/mitochondrial OS=Arabidopsis thaliana OX=3702 GN=PCMP-H51 PE=1 SV=2)

HSP 1 Score: 263.5 bits (672), Expect = 5.1e-69
Identity = 158/466 (33.91%), Postives = 237/466 (50.86%), Query Frame = 0 

Query: 56  QRFLSLFKQCSAVKDLNQLHARIIQSGFDQ---NLFVLGKLIEFCAVSAHGDMNYAVAVF 115
           QR  SL + CS +  L QLHA  +++ + +    LF+ GK+++    S+  D+NYA  VF
Sbjct: 49  QRIFSLAETCSDMSQLKQLHAFTLRTTYPEEPATLFLYGKILQLS--SSFSDVNYAFRVF 108

Query: 116 NRIENPDGFLWNTMIRGFGR-ISNLPKAFEFYKRMLEKGIAA-DNFTFXXXXXXXXXXXX 175
           + IEN   F+WNT+IR     +S   +AF  Y++MLE+G ++ D  TF            
Sbjct: 109 DSIENHSSFMWNTLIRACAHDVSRKEEAFMLYRKMLERGESSPDKHTFPFVLKACAYIFG 168

Query: 176 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDEMPKPGLVAWNTVIDC 235
                                                      DEMP+  LV+WN++ID 
Sbjct: 169 FSEGKQVHCQIVKHGFGGDVYVNNGLIHLYGSCGCLDLARKVFDEMPERSLVSWNSMIDA 228

Query: 236 HVSCGMYNEALALFLQMLQSGVEPDEATLVVTVSACSALGALDFGRWVHSHVK---DNDR 295
            V  G Y+ AL LF +M Q   EPD  T+   +SAC+ LG+L  G W H+ +    D D 
Sbjct: 229 LVRFGEYDSALQLFREM-QRSFEPDGYTMQSVLSACAGLGSLSLGTWAHAFLLRKCDVDV 288

Query: 296 GKTIAVFNSLIDMYAKCGAVEDAREMFNA-TXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 355
              + V NSLI+MY KCG++  A ++F                                 
Sbjct: 289 AMDVLVKNSLIEMYCKCGSLRMAEQVFQGMQKRDLASWNAMILGFATHGRAEEAMNFFDR 348

Query: 356 XXXXXXXXXPDGVTFLGVLCACNHGGKVEEGRRYFDLMTKHCNIQPTVKHYGSMVDILGR 415
                    P+ VTF+G+L ACNH G V +GR+YFD+M +   I+P ++HYG +VD++ R
Sbjct: 349 MVDKRENVRPNSVTFVGLLIACNHRGFVNKGRQYFDMMVRDYCIEPALEHYGCIVDLIAR 408

Query: 416 AGFVEEAYQLIRSMPMECNAVIWRTLL-AACRMHGNVKLGERVRSHVLEIEPDHSSD--- 475
           AG++ EA  ++ SMPM+ +AVIWR+LL A C+   +V+L E +  +++  + D+ S    
Sbjct: 409 AGYITEAIDMVMSMPMKPDAVIWRSLLDACCKKGASVELSEEIARNIIGTKEDNESSNGN 468

Query: 476 ----YVLLANIYASSGQWNEMMKVRKSMQRKGVQKPEPGNSFLEIN 505
               YVLL+ +YAS+ +WN++  VRK M   G++K EPG S +EIN
Sbjct: 469 CSGAYVLLSRVYASASRWNDVGIVRKLMSEHGIRK-EPGCSSIEIN 510

[Close]
BLAST of Carg17953 vs. Swiss-Prot
Match: sp|Q8LK93|PP145_ARATH (Pentatricopeptide repeat-containing protein At2g02980, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PCMP-H26 PE=2 SV=2)

HSP 1 Score: 262.3 bits (669), Expect = 1.1e-68
Identity = 174/451 (38.58%), Postives = 254/451 (56.32%), Query Frame = 0 

Query: 56  QRFLSLFKQCSAVKDLNQLHARIIQSGFDQNLFVLGKLIEFCAVS-AHGDMNYAVAVFNR 115
           Q  + L  +C+++++L Q+ A  I+S  +   FV  KLI FC  S     M+YA  +F  
Sbjct: 30  QNPILLISKCNSLRELMQIQAYAIKSHIEDVSFV-AKLINFCTESPTESSMSYARHLFEA 89

Query: 116 IENPDGFLWNTMIRGFGRISNLPKAFEFYKRMLEKGIAADNFTFXXXXXXXXXXXXXXXX 175
           +  PD  ++N+M RG+ R +N  + F  +  +LE GI  DN+TF                
Sbjct: 90  MSEPDIVIFNSMARGYSRFTNPLEVFSLFVEILEDGILPDNYTFPSLLKACAVAKALEEG 149

Query: 176 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDEMPKPGLVAWNTVIDCHVSC 235
                                                  D + +P +V +N +I  +   
Sbjct: 150 RQLHCLSMKLGLDDNVYVCPTLINMYTECEDVDSARCVFDRIVEPCVVCYNAMITGYARR 209

Query: 236 GMYNEALALFLQMLQSGVEPDEATLVVTVSACSALGALDFGRWVHSHVKDNDRGKTIAVF 295
              NEAL+LF +M    ++P+E TL+  +S+C+ LG+LD G+W+H + K +   K + V 
Sbjct: 210 NRPNEALSLFREMQGKYLKPNEITLLSVLSSCALLGSLDLGKWIHKYAKKHSFCKYVKVN 269

Query: 296 NSLIDMYAKCGAVEDAREMFNATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 355
            +LIDM+AKCG+++DA  +F             XXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 270 TALIDMFAKCGSLDDAVSIFE-KMRYKDTQAWSXXXXXXXXXXXXXXXXXXXXXXXXXXX 329

Query: 356 XPDGVTFLGVLCACNHGGKVEEGRRYFDLMTKHCNIQPTVKHYGSMVDILGRAGFVEEAY 415
            PD +TFLG+L AC+H G+VEEGR+YF  M     I P++KHYGSMVD+L RAG +E+AY
Sbjct: 330 QPDEITFLGLLNACSHTGRVEEGRKYFSQMVSKFGIVPSIKHYGSMVDLLSRAGNLEDAY 389

Query: 416 QLIRSMPMECNAVIWRTLLAACRMHGNVKLGERVRSHVLEIEPDHSSDYVLLANIYASSG 475
           + I  +P+    ++WR LLAAC  H N+ L E+V   + E++  H  DYV+L+N+YA + 
Sbjct: 390 EFIDKLPISPTPMLWRILLAACSSHNNLDLAEKVSERIFELDDSHGGDYVILSNLYARNK 449

Query: 476 QWNEMMKVRKSMQ-RKGVQKPEPGNSFLEIN 505
           +W  +  +RK M+ RK V+   PG S +E+N
Sbjct: 450 KWEYVDSLRKVMKDRKAVK--VPGCSSIEVN 476

[Close]
BLAST of Carg17953 vs. Swiss-Prot
Match: sp|Q9C6T2|PPR68_ARATH (Pentatricopeptide repeat-containing protein At1g31920 OS=Arabidopsis thaliana OX=3702 GN=PCMP-H11 PE=2 SV=1)

HSP 1 Score: 238.4 bits (607), Expect = 1.8e-61
Identity = 144/486 (29.63%), Postives = 229/486 (47.12%), Query Frame = 0 

Query: 21  IKFPHFQLLLPKFIWSSDRKTPTDAIPNGCYFSKEQRFLSLFKQCSAVKDLNQLHARIIQ 80
           IK P  Q LL     S D  T    + N  +  KEQ  L L K+C  + +  Q+HAR I+
Sbjct: 2   IKAPILQSLLA----SRDDLTHNPEVNN--FGGKEQECLYLLKRCHNIDEFKQVHARFIK 61

Query: 81  -SGFDQNLFVLGKLIEFCAVSA-HGDMNYAVAVFNRIENPDGFLWNTMIRGFGRISNLPK 140
            S F  + F    ++  CA S     MNYA ++F  I++P  F +NTMIRG+  + +  +
Sbjct: 62  LSLFYSSSFSASSVLAKCAHSGWENSMNYAASIFRGIDDPCTFDFNTMIRGYVNVMSFEE 121

Query: 141 AFEFYKRMLEKGIAADNFTFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 200
           A  FY  M+++G   DNFT+                                        
Sbjct: 122 ALCFYNEMMQRGNEPDNFTYPCLLKACTRLKSIREGKQIHGQVFKLGLEADVFVQNSLIN 181

Query: 201 XXXXXXXXXXXXXXXDEMPKPGLVAWNTVIDCHVSCGMYNEALALFLQML-QSGVEPDEA 260
                          +++      +W++++      GM++E L LF  M  ++ ++ +E+
Sbjct: 182 MYGRCGEMELSSAVFEKLESKTAASWSSMVSARAGMGMWSECLLLFRGMCSETNLKAEES 241

Query: 261 TLVVTVSACSALGALDFGRWVHSHVKDNDRGKTIAVFNSLIDMYAKCGAVEDAREMFNAT 320
            +V  + AC+  GAL+ G  +H  +  N     I V  SL+DMY KCG ++ A  +F   
Sbjct: 242 GMVSALLACANTGALNLGMSIHGFLLRNISELNIIVQTSLVDMYVKCGCLDKALHIFQ-K 301

Query: 321 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPDGVTFLGVLCACNHGGKVEEG 380
                                                 PD V ++ VL AC+H G V+EG
Sbjct: 302 MEKRNNLTYSAMISGLALHGEGESALRMFSKMIKEGLEPDHVVYVSVLNACSHSGLVKEG 361

Query: 381 RRYFDLMTKHCNIQPTVKHYGSMVDILGRAGFVEEAYQLIRSMPMECNAVIWRTLLAACR 440
           RR F  M K   ++PT +HYG +VD+LGRAG +EEA + I+S+P+E N VIWRT L+ CR
Sbjct: 362 RRVFAEMLKEGKVEPTAEHYGCLVDLLGRAGLLEEALETIQSIPIEKNDVIWRTFLSQCR 421

Query: 441 MHGNVKLGERVRSHVLEIEPDHSSDYVLLANIYASSGQWNEMMKVRKSMQRKGVQKPEPG 500
           +  N++LG+     +L++   +  DY+L++N+Y+    W+++ + R  +  KG+ K  PG
Sbjct: 422 VRQNIELGQIAAQELLKLSSHNPGDYLLISNLYSQGQMWDDVARTRTEIAIKGL-KQTPG 479

Query: 501 NSFLEI 504
            S +E+
Sbjct: 482 FSIVEL 479

[Close]
BLAST of Carg17953 vs. Swiss-Prot
Match: sp|Q9LN01|PPR21_ARATH (Pentatricopeptide repeat-containing protein At1g08070, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PCMP-H12 PE=2 SV=1)

HSP 1 Score: 231.9 bits (590), Expect = 1.7e-59
Identity = 115/293 (39.25%), Postives = 176/293 (60.07%), Query Frame = 0 

Query: 214 DEMPKPGLVAWNTVIDCHVSCGMYNEALALFLQMLQSGVEPDEATLVVTVSACSALGALD 273
           + +P   +++WNT+I  +    +Y EAL LF +ML+SG  P++ T++  + AC+ LGA+D
Sbjct: 325 ERLPYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGETPNDVTMLSILPACAHLGAID 384

Query: 274 FGRWVHSHVKDNDRGKTIA--VFNSLIDMYAKCGAVEDAREMFNATXXXXXXXXXXXXXX 333
            GRW+H ++    +G T A  +  SLIDMYAKCG +E A ++FN +              
Sbjct: 385 IGRWIHVYIDKRLKGVTNASSLRTSLIDMYAKCGDIEAAHQVFN-SILHKSLSSWNAMIF 444

Query: 334 XXXXXXXXXXXXXXXXXXXXXXXXPDGVTFLGVLCACNHGGKVEEGRRYFDLMTKHCNIQ 393
                                   PD +TF+G+L AC+H G ++ GR  F  MT+   + 
Sbjct: 445 GFAMHGRADASFDLFSRMRKIGIQPDDITFVGLLSACSHSGMLDLGRHIFRTMTQDYKMT 504

Query: 394 PTVKHYGSMVDILGRAGFVEEAYQLIRSMPMECNAVIWRTLLAACRMHGNVKLGERVRSH 453
           P ++HYG M+D+LG +G  +EA ++I  M ME + VIW +LL AC+MHGNV+LGE    +
Sbjct: 505 PKLEHYGCMIDLLGHSGLFKEAEEMINMMEMEPDGVIWCSLLKACKMHGNVELGESFAEN 564

Query: 454 VLEIEPDHSSDYVLLANIYASSGQWNEMMKVRKSMQRKGVQKPEPGNSFLEIN 505
           +++IEP++   YVLL+NIYAS+G+WNE+ K R  +  KG++K  PG S +EI+
Sbjct: 565 LIKIEPENPGSYVLLSNIYASAGRWNEVAKTRALLNDKGMKK-VPGCSSIEID 615

[Close]
BLAST of Carg17953 vs. Swiss-Prot
Match: sp|Q9LXY5|PP284_ARATH (Pentatricopeptide repeat-containing protein At3g56550 OS=Arabidopsis thaliana OX=3702 GN=PCMP-H80 PE=2 SV=1)

HSP 1 Score: 228.4 bits (581), Expect = 1.8e-58
Identity = 132/452 (29.20%), Postives = 221/452 (48.89%), Query Frame = 0 

Query: 54  KEQRFLSLFKQCSAVKDLNQLHARIIQSGFDQNLFVLGKLIEFCAVSAHGDMNYAVAVFN 113
           K +  + + + C+++K L ++H+ +I +G   +  +   L+ FCAVS  G +++A  +F+
Sbjct: 4   KARVIVRMLQGCNSMKKLRKIHSHVIINGLQHHPSIFNHLLRFCAVSVTGSLSHAQLLFD 63

Query: 114 RIE-NPDGFLWNTMIRGFGRISNLPKAFEFYKRMLEKGIA-ADNFTFXXXXXXXXXXXXX 173
             + +P    WN +IRGF   S+   +  FY RML   ++  D FTF             
Sbjct: 64  HFDSDPSTSDWNYLIRGFSNSSSPLNSILFYNRMLLSSVSRPDLFTFNFALKSCERIKSI 123

Query: 174 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDEMPKPGLVAWNTVIDCH 233
                                                     DEMP   LV+WN +I C 
Sbjct: 124 PKCLEIHGSVIRSGFLDDAIVATSLVRCYSANGSVEIASKVFDEMPVRDLVSWNVMICCF 183

Query: 234 VSCGMYNEALALFLQMLQSGVEPDEATLVVTVSACSALGALDFGRWVHSHVKDNDRGKTI 293
              G++N+AL+++ +M   GV  D  TLV  +S+C+ + AL+ G  +H    D      +
Sbjct: 184 SHVGLHNQALSMYKRMGNEGVCGDSYTLVALLSSCAHVSALNMGVMLHRIACDIRCESCV 243

Query: 294 AVFNSLIDMYAKCGAVEDAREMFNATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 353
            V N+LIDMYAKCG++E+A  +FN                                    
Sbjct: 244 FVSNALIDMYAKCGSLENAIGVFNG-MRKRDVLTWNSMIIGYGVHGHGVEAISFFRKMVA 303

Query: 354 XXXXPDGVTFLGVLCACNHGGKVEEGRRYFDLMTKHCNIQPTVKHYGSMVDILGRAGFVE 413
               P+ +TFLG+L  C+H G V+EG  +F++M+   ++ P VKHYG MVD+ GRAG +E
Sbjct: 304 SGVRPNAITFLGLLLGCSHQGLVKEGVEHFEIMSSQFHLTPNVKHYGCMVDLYGRAGQLE 363

Query: 414 EAYQLIRSMPMECNAVIWRTLLAACRMHGNVKLGERVRSHVLEIEPDHSSDYVLLANIYA 473
            + ++I +     + V+WRTLL +C++H N++LGE     ++++E  ++ DYVL+ +IY+
Sbjct: 364 NSLEMIYASSCHEDPVLWRTLLGSCKIHRNLELGEVAMKKLVQLEAFNAGDYVLMTSIYS 423

Query: 474 SSGQWNEMMKVRKSMQRKGVQKPEPGNSFLEI 504
           ++        +RK ++   +Q   PG S++EI
Sbjct: 424 AANDAQAFASMRKLIRSHDLQ-TVPGWSWIEI 453

[Close]
BLAST of Carg17953 vs. TrEMBL
Match: tr|A0A1S3BWU9|A0A1S3BWU9_CUCME (pentatricopeptide repeat-containing protein At1g59720, chloroplastic/mitochondrial OS=Cucumis melo OX=3656 GN=LOC103494002 PE=4 SV=1)

HSP 1 Score: 673.3 bits (1736), Expect = 4.3e-190
Identity = 395/505 (78.22%), Postives = 420/505 (83.17%), Query Frame = 0 

Query: 1   MIVLNGGKSNLARSLFSRVEIKFPHFQLLLPKFIWSSDRKTPTDAIPNGCYFSKEQRFLS 60
           MI++NG K NLA SL S  +IKF  FQL++P+FIW+S  KT TD IPNG YF+KEQ  + 
Sbjct: 1   MILINGRKLNLALSLCSHGKIKFSKFQLVVPRFIWNSGPKTATDTIPNGGYFAKEQNLMF 60

Query: 61  LFKQCSAVKDLNQLHARIIQSGFDQNLFVLGKLIEFCAVSAHGDMNYAVAVFNRIENPDG 120
           LFKQCS +K LNQLHARII+ GFDQNLFV+GKLI+FCAVS HGDMNYAV VF+RIENPDG
Sbjct: 61  LFKQCSTLKHLNQLHARIIRLGFDQNLFVIGKLIDFCAVSDHGDMNYAVDVFDRIENPDG 120

Query: 121 FLWNTMIRGFGRISNLPKAFEFYKRMLEKGIAADNFTFXXXXXXXXXXXXXXXXXXXXXX 180
           FLWNTMIRGFGRI  L  AFEFYKRMLEKGI       XXXXXXXXXXXXXXXXXXXXXX
Sbjct: 121 FLWNTMIRGFGRIRKLLMAFEFYKRMLEKGIEXXXXXXXXXXXXXXXXXXXXXXXXXXXX 180

Query: 181 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDEMPKPGLVAWNTVIDCHVSCGMYNEA 240
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX E+PK  LVAWN VIDCHVSCGMYNEA
Sbjct: 181 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXELPKTDLVAWNAVIDCHVSCGMYNEA 240

Query: 241 LALFLQMLQSGVEPDEATLVVTVSACSALGALDFGRWVHSHVKDNDRGKTIAVFNSLIDM 300
           L LFLQMLQSGVEPDEATLVVTVSACSALGALDFGRW+HSHV  NDRGKT AVFNSLIDM
Sbjct: 241 LDLFLQMLQSGVEPDEATLVVTVSACSALGALDFGRWIHSHVNSNDRGKTTAVFNSLIDM 300

Query: 301 YAKCGAVEDAREMFNATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPDGVT 360
           YAKCGAV+ AREMFNA                                       PD VT
Sbjct: 301 YAKCGAVDYAREMFNAMSGKNVVTWNTMIMGLATHGDAEDALTLFSNMLTEKVETPDAVT 360

Query: 361 FLGVLCACNHGGKVEEGRRYFDLMTKHCNIQPTVKHYGSMVDILGRAGFVEEAYQLIRSM 420
           FL VLCACNHGGKVEEGRRYFDLMTKH NIQPT+KHYGSMVDILGRAGFVEEAYQLI+SM
Sbjct: 361 FLAVLCACNHGGKVEEGRRYFDLMTKHFNIQPTLKHYGSMVDILGRAGFVEEAYQLIKSM 420

Query: 421 PMECNAVIWRTLLAACRMHGNVKLGERVRSHVLEIEPDHSSDYVLLANIYASSGQWNEMM 480
           PMECNAVIWRTLLAAC+MHGNVKLGERV SHVLEIEPDHSSDYVLLAN+YASSGQWNEM+
Sbjct: 421 PMECNAVIWRTLLAACQMHGNVKLGERVSSHVLEIEPDHSSDYVLLANMYASSGQWNEMI 480

Query: 481 KVRKSMQRKGVQKPEPGNSFLEINP 506
           K RKSMQ+KGV+KPEPGNS+LEINP
Sbjct: 481 KTRKSMQQKGVEKPEPGNSYLEINP 505

[Close]
BLAST of Carg17953 vs. TrEMBL
Match: tr|A0A0A0LUI8|A0A0A0LUI8_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G009850 PE=4 SV=1)

HSP 1 Score: 668.7 bits (1724), Expect = 1.1e-188
Identity = 394/505 (78.02%), Postives = 420/505 (83.17%), Query Frame = 0 

Query: 1   MIVLNGGKSNLARSLFSRVEIKFPHFQLLLPKFIWSSDRKTPTDAIPNGCYFSKEQRFLS 60
           MI++N  K NLA SL S V+I F +FQLL+P+FIWSS  KT TD IPNG YF+KEQ+F+ 
Sbjct: 1   MILINRRKLNLALSLCSHVKINFSNFQLLVPRFIWSSGLKTATDTIPNGGYFAKEQKFMF 60

Query: 61  LFKQCSAVKDLNQLHARIIQSGFDQNLFVLGKLIEFCAVSAHGDMNYAVAVFNRIENPDG 120
           LFKQCS +KDLNQLHA II+ GFDQNLFV+GKLI+FCAVS HGDMNYAV VF+RIEN DG
Sbjct: 61  LFKQCSTLKDLNQLHASIIRLGFDQNLFVIGKLIDFCAVSDHGDMNYAVVVFDRIENADG 120

Query: 121 FLWNTMIRGFGRISNLPKAFEFYKRMLEKGIAADNFTFXXXXXXXXXXXXXXXXXXXXXX 180
           FLWNTMIRGFGR   L  AFEFYKRMLEKGIA      XXXXXXXXXXXXXXXXXXXXXX
Sbjct: 121 FLWNTMIRGFGRNRKLLMAFEFYKRMLEKGIAXXXXXXXXXXXXXXXXXXXXXXXXXXXX 180

Query: 181 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDEMPKPGLVAWNTVIDCHVSCGMYNEA 240
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDE+PK  LVAWN VIDCHVSCGMYNEA
Sbjct: 181 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDELPKTDLVAWNAVIDCHVSCGMYNEA 240

Query: 241 LALFLQMLQSGVEPDEATLVVTVSACSALGALDFGRWVHSHVKDNDRGKTIAVFNSLIDM 300
           L LF+QMLQSGVEPDEATLVVT+SACSALGALD GRWVHSHV  NDRGKTIAVFNSLIDM
Sbjct: 241 LDLFVQMLQSGVEPDEATLVVTISACSALGALDCGRWVHSHVNSNDRGKTIAVFNSLIDM 300

Query: 301 YAKCGAVEDAREMFNATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPDGVT 360
           YAKCGAVE AREMFNA                                       PDGVT
Sbjct: 301 YAKCGAVEYAREMFNAVSGKNIVTWNTMIMGLATHGDAEDALTLFSNMLAERVETPDGVT 360

Query: 361 FLGVLCACNHGGKVEEGRRYFDLMTKHCNIQPTVKHYGSMVDILGRAGFVEEAYQLIRSM 420
           FL VLCACN+GGKVEEGRRYFDLMTKH NIQPT+KHYGSMVDILGRAGFVEEAYQLI+SM
Sbjct: 361 FLAVLCACNYGGKVEEGRRYFDLMTKHFNIQPTLKHYGSMVDILGRAGFVEEAYQLIKSM 420

Query: 421 PMECNAVIWRTLLAACRMHGNVKLGERVRSHVLEIEPDHSSDYVLLANIYASSGQWNEMM 480
           PMECNAVIWRTLLAAC+MHGNV+LGERV SHVLEI  DHSSDYVLLAN+YASSGQWNEM+
Sbjct: 421 PMECNAVIWRTLLAACQMHGNVELGERVSSHVLEIVADHSSDYVLLANMYASSGQWNEMI 480

Query: 481 KVRKSMQRKGVQKPEPGNSFLEINP 506
           K RKSM RKGV+KPEPGNS+LEINP
Sbjct: 481 KTRKSMHRKGVEKPEPGNSYLEINP 505

[Close]
BLAST of Carg17953 vs. TrEMBL
Match: tr|A0A2N9H027|A0A2N9H027_FAGSY (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS32881 PE=4 SV=1)

HSP 1 Score: 515.4 bits (1326), Expect = 1.5e-142
Identity = 253/464 (54.53%), Postives = 311/464 (67.03%), Query Frame = 0 

Query: 59  LSLFKQCSAVKDLNQLHARIIQSGFDQNLFVLGKLIEFCAVSAHGDMNYAVAVFNRIENP 118
           +SLFK+C+ +KDL Q+HA IIQ+    NL+V+GK+I FCAVS HGDM+YA  VF++IENP
Sbjct: 1   MSLFKRCATMKDLKQVHAHIIQTCLHHNLYVIGKIIVFCAVSEHGDMDYAGLVFDKIENP 60

Query: 119 DGFLWNTMIRGFGRISNLPKAFEFYKRMLEKGIAADNFTFXXXXXXXXXXXXXXXXXXXX 178
           DGFLWNTMIRGF +     KAFEFYKRM EKG  ADNFTF                    
Sbjct: 61  DGFLWNTMIRGFVKTGQKEKAFEFYKRMQEKGEVADNFTFSFLLKFCGQLGSVMLGKQIY 120

Query: 179 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDEMPKPGLVAWNTVIDCHVSCGMYN 238
                                              +E+P+P LVAWNT++DCHV+CG   
Sbjct: 121 CDTMKHGLESHVFVRNTLIHMYGMFKDIETARQLFEEIPRPDLVAWNTILDCHVNCGKCK 180

Query: 239 EALALFLQMLQSGVEPDEATLVVTVSACSALGALDFGRWVHSHVKDNDRGKTIAVFNSLI 298
           EA+ LFL MLQ GVEPDEATLVVT+SACSALGALDFGRWVHS +  +  G  ++V NSLI
Sbjct: 181 EAIDLFLLMLQRGVEPDEATLVVTLSACSALGALDFGRWVHSCINHSSLGDDVSVSNSLI 240

Query: 299 DMYAKCGAVEDAREMFNATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPDG 358
           DMYAKCGAV++A E FN                                        P+ 
Sbjct: 241 DMYAKCGAVDEAYETFNKMKWKNIVSWNIMILGLATHGHTNEALAIFSKMLEEKLVKPND 300

Query: 359 VTFLGVLCACNHGGKVEEGRRYFDLMTKHCNIQPTVKHYGSMVDILGRAGFVEEAYQLIR 418
           VTFLGVLCAC+HGG V++G+RYF++M K  +I+PT+KHYG MVD+LGRAGFV EAYQLIR
Sbjct: 301 VTFLGVLCACSHGGMVDDGKRYFNVMIKDYHIKPTIKHYGCMVDVLGRAGFVGEAYQLIR 360

Query: 419 SMPMECNAVIWRTLLAACRMHGNVKLGERVRSHVLEIEPDHSSDYVLLANIYASSGQWNE 478
           SMP++CNA++WRTLLAACR+HGNV+LGE+VRSH+LE+EPDHSSD+VLLAN+YAS GQWN+
Sbjct: 361 SMPVQCNAIVWRTLLAACRLHGNVELGEKVRSHLLELEPDHSSDFVLLANMYASVGQWNK 420

Query: 479 MMKVRKSMQRKGVQKPEPGNSFLEINPCRKLEMETVENYNNAET 523
           M  VRK+MQ +GVQKPEPGNSF+ I+   +L+MET +   +  T
Sbjct: 421 MTGVRKAMQDRGVQKPEPGNSFIGIHGSMRLKMETEDGGRHTST 464

[Close]
BLAST of Carg17953 vs. TrEMBL
Match: tr|A0A2I4F4L6|A0A2I4F4L6_9ROSI (pentatricopeptide repeat-containing protein At1g59720, chloroplastic/mitochondrial-like OS=Juglans regia OX=51240 GN=LOC108995458 PE=4 SV=1)

HSP 1 Score: 513.5 bits (1321), Expect = 5.8e-142
Identity = 253/469 (53.94%), Postives = 312/469 (66.52%), Query Frame = 0 

Query: 54  KEQRFLSLFKQCSAVKDLNQLHARIIQSGFDQNLFVLGKLIEFCAVSAHGDMNYAVAVFN 113
           KEQ  +SLFKQCS +KDL Q+HA +IQ+GF+Q L+V+GK+I FCAVS HG+M+YAV+VFN
Sbjct: 47  KEQSLMSLFKQCSTLKDLKQVHAHVIQTGFNQYLYVIGKIIVFCAVSEHGEMDYAVSVFN 106

Query: 114 RIENPDGFLWNTMIRGFGRISNLPKAFEFYKRMLEKGIAADNFTFXXXXXXXXXXXXXXX 173
            IENPDGFLWNTMIRG G+ +   +AFEFYKRM ++G  ADNFTF               
Sbjct: 107 GIENPDGFLWNTMIRGLGKTNQPERAFEFYKRMQKRGEVADNFTFSFLLKFCGQLGSVML 166

Query: 174 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDEMPKPGLVAWNTVIDCHVS 233
                                                   +E+  P +VAWNTVIDCHV 
Sbjct: 167 GKQIHCDTMKQGLESHVFVRNTLIHMYGMLKDSETARRLFEEISMPDVVAWNTVIDCHVY 226

Query: 234 CGMYNEALALFLQMLQSGVEPDEATLVVTVSACSALGALDFGRWVHSHVKDNDRGKTIAV 293
           CG + EAL LFL+MLQ G++PDEATLVVT+S CS LGALDFGRWVHS +K +D  K ++V
Sbjct: 227 CGKFKEALDLFLRMLQCGIDPDEATLVVTLSGCSGLGALDFGRWVHSCIKGSDLSKIVSV 286

Query: 294 FNSLIDMYAKCGAVEDAREMFNATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 353
            NSLIDMYAKCGAVE+A E+FN                                      
Sbjct: 287 SNSLIDMYAKCGAVEEAYEIFNNMKIKDIVSWNTMIIGLAAHGHADEALAVFSKMLEEKI 346

Query: 354 XXPDGVTFLGVLCACNHGGKVEEGRRYFDLMTKHCNIQPTVKHYGSMVDILGRAGFVEEA 413
             PD VTF+GVL AC+HGG ++  RRYFD+M+K   IQP++KHYG MVD LGRAGFVEEA
Sbjct: 347 ETPDEVTFMGVLSACSHGGMIDYARRYFDVMSKDYRIQPSIKHYGCMVDALGRAGFVEEA 406

Query: 414 YQLIRSMPMECNAVIWRTLLAACRMHGNVKLGERVRSHVLEIEPDHSSDYVLLANIYASS 473
           Y+LIRSMP+ECNA++WRTLLAAC +HG V LGE+VR+H+LE+EP HSSDYVLLAN+YAS 
Sbjct: 407 YELIRSMPIECNAIVWRTLLAACGVHGYVVLGEKVRNHLLELEPGHSSDYVLLANMYASL 466

Query: 474 GQWNEMMKVRKSMQRKGVQKPEPGNSFLEINPCRKLEMETVENYNNAET 523
           GQW+EM  VRK+MQ +GVQK EPGNSF+ ++   +LEM+T + Y +  T
Sbjct: 467 GQWSEMTGVRKAMQDRGVQKTEPGNSFIGLHGRTRLEMKTEDGYKDKNT 515

[Close]
BLAST of Carg17953 vs. TrEMBL
Match: tr|A0A2P5F712|A0A2P5F712_9ROSA (Tetratricopeptide-like helical domain containing protein OS=Trema orientalis OX=63057 GN=TorRG33x02_105490 PE=4 SV=1)

HSP 1 Score: 505.8 bits (1301), Expect = 1.2e-139
Identity = 250/456 (54.82%), Postives = 302/456 (66.23%), Query Frame = 0 

Query: 47  PNGCYFSKEQRFLSLFKQCSAVKDLNQLHARIIQSGFDQNLFVLGKLIEFCAV-SAHGDM 106
           PNG  F K QR +SLFK CS +KDLNQ+H RII+ GF+Q+LFV+GK++EFCAV    GD+
Sbjct: 48  PNGTVFEKLQRVMSLFKLCSTMKDLNQIHGRIIRVGFEQDLFVMGKIVEFCAVGGGGGDL 107

Query: 107 NYAVAVFNRIENPDGFLWNTMIRGFGRISNLPKAFEFYKRMLEKGIAADNFTFXXXXXXX 166
           +YAV+VF+ ++NPDGFLWNTMIRGFG+ +   KAFE YKRM EKG  AD+FTF       
Sbjct: 108 DYAVSVFDSVQNPDGFLWNTMIRGFGKTNQPEKAFELYKRMQEKGGTADSFTFAFLIKVS 167

Query: 167 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDEMPKPGLVAWN 226
                                                           DEMP P LV+WN
Sbjct: 168 EQLGPEILGQGMHCSCLKHGLDFHVFVRNTLIHMYGMSRHIKTAVQLFDEMPNPDLVSWN 227

Query: 227 TVIDCHVSCGMYNEALALFLQMLQSGVEPDEATLVVTVSACSALGALDFGRWVHSHVKDN 286
           T++DCHV CG + EAL LFL ML+SG +PD+AT VVT+SACS +GALDFGRWVHS+V + 
Sbjct: 228 TILDCHVYCGKHKEALDLFLTMLKSGTQPDDATFVVTLSACSTMGALDFGRWVHSYVNNT 287

Query: 287 DRGKTIAVFNSLIDMYAKCGAVEDAREMFNATXXXXXXXXXXXXXXXXXXXXXXXXXXXX 346
             G  I V NSL+ MYAKCGAVE+A E FN                              
Sbjct: 288 RFGNFILVLNSLVHMYAKCGAVEEAYETFNNMKWKNLISWNTMLLTLATHGHVDKALALF 347

Query: 347 XXXXXXXXXXPDGVTFLGVLCACNHGGKVEEGRRYFDLMTKHCNIQPTVKHYGSMVDILG 406
                     PD VTFLGVL AC+HGG V+EGRRYFD+M++  NIQPTVKHYG MVDILG
Sbjct: 348 SKMLEEGLERPDNVTFLGVLSACSHGGMVDEGRRYFDIMSRDYNIQPTVKHYGCMVDILG 407

Query: 407 RAGFVEEAYQLIRSMPMECNAVIWRTLLAACRMHGNVKLGERVRSHVLEIEPDHSSDYVL 466
           RAG VEEAYQLI SMPME NA++WRTLLAAC +HGN+ LGE+VR H+L++EPDHSSDYVL
Sbjct: 408 RAGLVEEAYQLIMSMPMEGNAIVWRTLLAACSVHGNIVLGEKVRKHLLQLEPDHSSDYVL 467

Query: 467 LANIYASSGQWNEMMKVRKSMQRKGVQKPEPGNSFL 502
           LAN+YAS+GQW+E+ +VRKSM+ + VQK EPGNSF+
Sbjct: 468 LANMYASAGQWSEVNRVRKSMRDRQVQKLEPGNSFI 503

The following BLAST results are available for this feature:
BLAST of Carg17953 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022921850.12.7e-24489.10pentatricopeptide repeat-containing protein At1g59720, chloroplastic/mitochondri... [more]
XP_023516362.12.0e-23995.41pentatricopeptide repeat-containing protein At4g21065-like [Cucurbita pepo subsp... [more]
XP_022987183.14.7e-22895.41pentatricopeptide repeat-containing protein At1g59720, chloroplastic/mitochondri... [more]
XP_022135209.13.4e-20273.90pentatricopeptide repeat-containing protein At2g02980, chloroplastic-like [Momor... [more]
XP_008453215.26.6e-19078.22PREDICTED: pentatricopeptide repeat-containing protein At1g59720, chloroplastic/... [more]
BLAST of Carg17953 vs. TAIR10
Match NameE-valueIdentityDescription
AT1G59720.12.8e-7033.91Tetratricopeptide repeat (TPR)-like superfamily protein[more]
AT2G02980.16.3e-7038.58Pentatricopeptide repeat (PPR) superfamily protein[more]
AT1G31920.19.8e-6329.63Tetratricopeptide repeat (TPR)-like superfamily protein[more]
AT1G08070.19.2e-6139.25Tetratricopeptide repeat (TPR)-like superfamily protein[more]
AT3G56550.11.0e-5929.20Pentatricopeptide repeat (PPR) superfamily protein[more]
BLAST of Carg17953 vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|Q0WQW5|PPR85_ARATH5.1e-6933.91Pentatricopeptide repeat-containing protein At1g59720, chloroplastic/mitochondri... [more]
sp|Q8LK93|PP145_ARATH1.1e-6838.58Pentatricopeptide repeat-containing protein At2g02980, chloroplastic OS=Arabidop... [more]
sp|Q9C6T2|PPR68_ARATH1.8e-6129.63Pentatricopeptide repeat-containing protein At1g31920 OS=Arabidopsis thaliana OX... [more]
sp|Q9LN01|PPR21_ARATH1.7e-5939.25Pentatricopeptide repeat-containing protein At1g08070, chloroplastic OS=Arabidop... [more]
sp|Q9LXY5|PP284_ARATH1.8e-5829.20Pentatricopeptide repeat-containing protein At3g56550 OS=Arabidopsis thaliana OX... [more]
BLAST of Carg17953 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A1S3BWU9|A0A1S3BWU9_CUCME4.3e-19078.22pentatricopeptide repeat-containing protein At1g59720, chloroplastic/mitochondri... [more]
tr|A0A0A0LUI8|A0A0A0LUI8_CUCSA1.1e-18878.02Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G009850 PE=4 SV=1[more]
tr|A0A2N9H027|A0A2N9H027_FAGSY1.5e-14254.53Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS32881 PE=4 SV=1[more]
tr|A0A2I4F4L6|A0A2I4F4L6_9ROSI5.8e-14253.94pentatricopeptide repeat-containing protein At1g59720, chloroplastic/mitochondri... [more]
tr|A0A2P5F712|A0A2P5F712_9ROSA1.2e-13954.82Tetratricopeptide-like helical domain containing protein OS=Trema orientalis OX=... [more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
Vocabulary: INTERPRO
TermDefinition
IPR002885Pentatricopeptide_repeat
IPR011990TPR-like_helical_dom_sf
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0005515 protein binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg17953-RACarg17953-RAmRNA


InterPro
Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3DG3DSA:1.25.40.10coord: 261..387
e-value: 1.6E-26
score: 95.4
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3DG3DSA:1.25.40.10coord: 48..180
e-value: 2.4E-18
score: 68.8
coord: 388..516
e-value: 3.5E-16
score: 61.6
IPR002885Pentatricopeptide repeatPFAMPF01535PPRcoord: 463..491
e-value: 0.022
score: 14.9
coord: 293..315
e-value: 5.2E-4
score: 20.0
coord: 397..421
e-value: 0.0039
score: 17.2
coord: 194..218
e-value: 9.9E-4
score: 19.1
IPR002885Pentatricopeptide repeatPFAMPF13041PPR_2coord: 219..266
e-value: 4.8E-10
score: 39.3
coord: 320..368
e-value: 4.2E-10
score: 39.6
coord: 118..165
e-value: 9.0E-10
score: 38.5
IPR002885Pentatricopeptide repeatTIGRFAMTIGR00756TIGR00756coord: 222..256
e-value: 3.5E-9
score: 34.3
coord: 122..154
e-value: 4.6E-7
score: 27.6
coord: 323..357
e-value: 1.6E-7
score: 29.0
coord: 194..217
e-value: 6.1E-4
score: 17.8
coord: 359..393
e-value: 0.0023
score: 16.0
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 357..387
score: 7.048
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 290..320
score: 8.035
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 154..188
score: 6.829
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 119..153
score: 11.268
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 220..254
score: 11.674
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 459..493
score: 8.451
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 189..219
score: 7.574
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 321..355
score: 10.961
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 393..423
score: 7.805
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 425..455
score: 5.536
NoneNo IPR availablePANTHERPTHR24015:SF987SUBFAMILY NOT NAMEDcoord: 81..506
NoneNo IPR availablePANTHERPTHR24015FAMILY NOT NAMEDcoord: 81..506

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Carg17953Cla019101Watermelon (97103) v1carwmB0460
Carg17953Csa1G009850Cucumber (Chinese Long) v2carcuB0493
Carg17953ClCG06G016090Watermelon (Charleston Gray)carwcgB0450
Carg17953CSPI01G02400Wild cucumber (PI 183967)carcpiB0499
Carg17953Cucsa.197810Cucumber (Gy14) v1carcgyB0533
Carg17953CmaCh10G002000Cucurbita maxima (Rimu)carcmaB0640
Carg17953CmoCh10G002180Cucurbita moschata (Rifu)carcmoB0622
Carg17953Lsi06G014550Bottle gourd (USVL1VR-Ls)carlsiB419
Carg17953Cp4.1LG04g15010Cucurbita pepo (Zucchini)carcpeB0649
Carg17953CsGy1G002450Cucumber (Gy14) v2carcgybB0470
Carg17953CsaV3_1G002450Cucumber (Chinese Long) v3carcucB0496
Carg17953Cla97C06G125670Watermelon (97103) v2carwmbB0486
Carg17953Bhi02G000217Wax gourdcarwgoB0564
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Carg17953Cucumber (Gy14) v2carcgybB0472
Carg17953Silver-seed gourdcarcarB060
Carg17953Silver-seed gourdcarcarB460
Carg17953Cucumber (Gy14) v1carcgyB0531
Carg17953Cucurbita maxima (Rimu)carcmaB0642
Carg17953Cucurbita maxima (Rimu)carcmaB0646
Carg17953Cucurbita moschata (Rifu)carcmoB0624
Carg17953Cucurbita moschata (Rifu)carcmoB0628
Carg17953Cucurbita pepo (Zucchini)carcpeB0646
Carg17953Cucurbita pepo (Zucchini)carcpeB0648
Carg17953Wild cucumber (PI 183967)carcpiB0501
Carg17953Cucumber (Chinese Long) v2carcuB0495
Carg17953Cucumber (Chinese Long) v3carcucB0498
Carg17953Bottle gourd (USVL1VR-Ls)carlsiB418
Carg17953Melon (DHL92) v3.5.1carmeB0466
Carg17953Melon (DHL92) v3.5.1carmeB0468
Carg17953Melon (DHL92) v3.6.1carmedB0469
Carg17953Melon (DHL92) v3.6.1carmedB0471
Carg17953Watermelon (Charleston Gray)carwcgB0448
Carg17953Watermelon (97103) v1carwmB0458
Carg17953Watermelon (97103) v2carwmbB0483
Carg17953Wax gourdcarwgoB0559
Carg17953Wax gourdcarwgoB0562