Carg17878 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg17878
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	18S pre-ribosomal assembly protein gar2-like protein
Location	Cucurbita_argyrosperma_scaffold_114 : 68071 .. 69236 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGGAGTGAATTTTCTGATTTGGTAGTGAACAATATGCATAAAAGCCGAAGCATGGAGAAGACTGAATGGAAAGTCGATGTCGAGTCATTTAAAAGAAGAAACTATGTTGTACAACAGAGAGATGATGATCCTAGTGAATCAGAAGGAATTGGAGATCAAATCAGCCGGTATTCCCCAAAGAGTTCATTCAAGACTTCAATGGATGACGAGTTGCCTGAGCTTGTTGTTTTCCTTCAAGAAACCGACTTAGAATTTGTGAAAGATATTTGCATCGACAAAGTGGTAATGTCACATGAAAAATACATCAAGGAGAATTGTGACACAGAAGATGGTTTCGTCCCTGACATGCTCAAGCATAATACACCAGAAAGCGACTGTGAATCAAGTGAAGAATCCGAGTACTTGGAGTCGTCGGTTTCAAGTACTGAATCAACACAGATCCTTGGGGAAGACCTCTTTAACAAAGTAAATGAGAAACAAAAGGATTATTCTTCTGAGGTTTCCATTATGAAATCTGTGCCTATATTGTTCCTTGATAGAAAGGTGAGAGTAAACTTGGCTTAGCTTAGCATGCTTCTTGATTGATATCCGTTTTAGCTAAAGACATGATTTGATTGTCTGAAAACTCTGTAGGTTACAGGTAAGAAGGAAGCAGCTTCGACAAACTCTATTGCAAGATCATTGACTAAGATACTTGATGAAAACGGACACAAAGGCAAAGCAGTTGCTAGAAGCAAGAGCAACTTTGAACTTGGCAGCAACTGGACAGCAGGTTGCCGGCACTGTCATGACTGTGGAAGCACATCCATGGCTGAGGACGACACGCCGGAGAATCATCAGCATGAAGATGGTTCCTCTGCAGCGCATCACTTAAGACCCTCATTGTCATCTTCTTTGGGCAGTGCATCGCTCAAGTCGAACAGCAGCACCAACAGCTCACATTCCTTCTCTTTTCCAATGTATGTAATGTTGCTTCTCTTTCAACCTTATCTATTGAAATTGAAACATATAGTTAATTATTGTCTTGCCCCTCTTGAATTCACAGTTTAGAAACAGAATGGATTGGAAGTCCAGAAAGAATGGCGAAAGCTGATCCGTTGCAAACGTTGCGAACGCGAAGGCGACAACTATGGAGGCGATGTTTTCCCTGCTGTAATTTCTAG

mRNA sequence

ATGAGGAGTGAATTTTCTGATTTGGTAGTGAACAATATGCATAAAAGCCGAAGCATGGAGAAGACTGAATGGAAAGTCGATGTCGAGTCATTTAAAAGAAGAAACTATGTTGTACAACAGAGAGATGATGATCCTAGTGAATCAGAAGGAATTGGAGATCAAATCAGCCGGTATTCCCCAAAGAGTTCATTCAAGACTTCAATGGATGACGAGTTGCCTGAGCTTGTTGTTTTCCTTCAAGAAACCGACTTAGAATTTGTGAAAGATATTTGCATCGACAAAGTGGTAATGTCACATGAAAAATACATCAAGGAGAATTGTGACACAGAAGATGGTTTCGTCCCTGACATGCTCAAGCATAATACACCAGAAAGCGACTGTGAATCAAGTGAAGAATCCGAGTACTTGGAGTCGTCGGTTTCAAGTACTGAATCAACACAGATCCTTGGGGAAGACCTCTTTAACAAAGTAAATGAGAAACAAAAGGATTATTCTTCTGAGGTTTCCATTATGAAATCTGTGCCTATATTGTTCCTTGATAGAAAGGTTACAGGTAAGAAGGAAGCAGCTTCGACAAACTCTATTGCAAGATCATTGACTAAGATACTTGATGAAAACGGACACAAAGGCAAAGCAGTTGCTAGAAGCAAGAGCAACTTTGAACTTGGCAGCAACTGGACAGCAGGTTGCCGGCACTGTCATGACTGTGGAAGCACATCCATGGCTGAGGACGACACGCCGGAGAATCATCAGCATGAAGATGGTTCCTCTGCAGCGCATCACTTAAGACCCTCATTGTCATCTTCTTTGGGCAGTGCATCGCTCAAGTCGAACAGCAGCACCAACAGCTCACATTCCTTCTCTTTTCCAATGTATGTAATTTTAGAAACAGAATGGATTGGAAGTCCAGAAAGAATGGCGAAAGCTGATCCGTTGCAAACGTTGCGAACGCGAAGGCGACAACTATGGAGGCGATGTTTTCCCTGCTGTAATTTCTAG

Coding sequence (CDS)

ATGAGGAGTGAATTTTCTGATTTGGTAGTGAACAATATGCATAAAAGCCGAAGCATGGAGAAGACTGAATGGAAAGTCGATGTCGAGTCATTTAAAAGAAGAAACTATGTTGTACAACAGAGAGATGATGATCCTAGTGAATCAGAAGGAATTGGAGATCAAATCAGCCGGTATTCCCCAAAGAGTTCATTCAAGACTTCAATGGATGACGAGTTGCCTGAGCTTGTTGTTTTCCTTCAAGAAACCGACTTAGAATTTGTGAAAGATATTTGCATCGACAAAGTGGTAATGTCACATGAAAAATACATCAAGGAGAATTGTGACACAGAAGATGGTTTCGTCCCTGACATGCTCAAGCATAATACACCAGAAAGCGACTGTGAATCAAGTGAAGAATCCGAGTACTTGGAGTCGTCGGTTTCAAGTACTGAATCAACACAGATCCTTGGGGAAGACCTCTTTAACAAAGTAAATGAGAAACAAAAGGATTATTCTTCTGAGGTTTCCATTATGAAATCTGTGCCTATATTGTTCCTTGATAGAAAGGTTACAGGTAAGAAGGAAGCAGCTTCGACAAACTCTATTGCAAGATCATTGACTAAGATACTTGATGAAAACGGACACAAAGGCAAAGCAGTTGCTAGAAGCAAGAGCAACTTTGAACTTGGCAGCAACTGGACAGCAGGTTGCCGGCACTGTCATGACTGTGGAAGCACATCCATGGCTGAGGACGACACGCCGGAGAATCATCAGCATGAAGATGGTTCCTCTGCAGCGCATCACTTAAGACCCTCATTGTCATCTTCTTTGGGCAGTGCATCGCTCAAGTCGAACAGCAGCACCAACAGCTCACATTCCTTCTCTTTTCCAATGTATGTAATTTTAGAAACAGAATGGATTGGAAGTCCAGAAAGAATGGCGAAAGCTGATCCGTTGCAAACGTTGCGAACGCGAAGGCGACAACTATGGAGGCGATGTTTTCCCTGCTGTAATTTCTAG

Protein sequence

MRSEFSDLVVNNMHKSRSMEKTEWKVDVESFKRRNYVVQQRDDDPSESEGIGDQISRYSPKSSFKTSMDDELPELVVFLQETDLEFVKDICIDKVVMSHEKYIKENCDTEDGFVPDMLKHNTPESDCESSEESEYLESSVSSTESTQILGEDLFNKVNEKQKDYSSEVSIMKSVPILFLDRKVTGKKEAASTNSIARSLTKILDENGHKGKAVARSKSNFELGSNWTAGCRHCHDCGSTSMAEDDTPENHQHEDGSSAAHHLRPSLSSSLGSASLKSNSSTNSSHSFSFPMYVILETEWIGSPERMAKADPLQTLRTRRRQLWRRCFPCCNF

Homology

[Close]

BLAST of Carg17878 vs. NCBI nr
Match: XP_022921457.1 (uncharacterized protein LOC111429731 isoform X1 [Cucurbita moschata] >XP_022921458.1 uncharacterized protein LOC111429731 isoform X1 [Cucurbita moschata] >XP_022921459.1 uncharacterized protein LOC111429731 isoform X1 [Cucurbita moschata])

HSP 1 Score: 638.3 bits (1645), Expect = 1.5e-179
Identity = 329/332 (99.10%), Postives = 329/332 (99.10%), Query Frame = 0


Query: 1   MRSEFSDLVVNNMHKSRSMEKTEWKVDVESFKRRNYVVQQRDDDPSESEGIGDQISRYSP 60
           MRSEFSDLVVNNMHKSRSMEKTEWKVDVESFKRRNYVVQQRDDDPSESEGIGDQISRYSP
Sbjct: 35  MRSEFSDLVVNNMHKSRSMEKTEWKVDVESFKRRNYVVQQRDDDPSESEGIGDQISRYSP 94

Query: 61  KSSFKTSMDDELPELVVFLQETDLEFVKDICIDKVVMSHEKYIKENCDTEDGFVPDMLKH 120
           KSSFKTSMDDELPELVVFLQETDLEFVKDICIDKVVMSHEKYIKENCDTEDGFVPDMLKH
Sbjct: 95  KSSFKTSMDDELPELVVFLQETDLEFVKDICIDKVVMSHEKYIKENCDTEDGFVPDMLKH 154

Query: 121 NTPESDCESSEESEYLESSVSSTESTQILGEDLFNKVNEKQKDYSSEVSIMKSVPILFLD 180
           NTPESDCESSEESEYLESSVSSTESTQILGEDLFNKVNEKQKDYSSEVSIMKSVPILFLD
Sbjct: 155 NTPESDCESSEESEYLESSVSSTESTQILGEDLFNKVNEKQKDYSSEVSIMKSVPILFLD 214

Query: 181 RKVTGKKEAASTNSIARSLTKILDENGHKGKAVARSKSNFELGSNWTAGCRHCHDCGSTS 240
           RKVTGKKEAASTNSIARSLTKILDENGHKGKAVARSKSNFELGSNWTAGCRHCHDCGSTS
Sbjct: 215 RKVTGKKEAASTNSIARSLTKILDENGHKGKAVARSKSNFELGSNWTAGCRHCHDCGSTS 274

Query: 241 MAEDDTPENHQHEDGSSAAHHLRPSLSSSLGSASLKSNSSTNSSHSFSFPMYVILETEWI 300
           MAEDDTPENHQHEDGSSAAHHLRPSLSSSLGSASLKSNSSTNSSHSFSFP   ILETEWI
Sbjct: 275 MAEDDTPENHQHEDGSSAAHHLRPSLSSSLGSASLKSNSSTNSSHSFSFP---ILETEWI 334

Query: 301 GSPERMAKADPLQTLRTRRRQLWRRCFPCCNF 333
           GSPERMAKADPLQTLRTRRRQLWRRCFPCCNF
Sbjct: 335 GSPERMAKADPLQTLRTRRRQLWRRCFPCCNF 363

[Close]

BLAST of Carg17878 vs. NCBI nr
Match: XP_022921460.1 (uncharacterized protein LOC111429731 isoform X2 [Cucurbita moschata] >XP_022921461.1 uncharacterized protein LOC111429731 isoform X2 [Cucurbita moschata] >XP_022921462.1 uncharacterized protein LOC111429731 isoform X2 [Cucurbita moschata] >XP_022921463.1 uncharacterized protein LOC111429731 isoform X2 [Cucurbita moschata])

HSP 1 Score: 638.3 bits (1645), Expect = 1.5e-179
Identity = 329/332 (99.10%), Postives = 329/332 (99.10%), Query Frame = 0


Query: 1   MRSEFSDLVVNNMHKSRSMEKTEWKVDVESFKRRNYVVQQRDDDPSESEGIGDQISRYSP 60
           MRSEFSDLVVNNMHKSRSMEKTEWKVDVESFKRRNYVVQQRDDDPSESEGIGDQISRYSP
Sbjct: 1   MRSEFSDLVVNNMHKSRSMEKTEWKVDVESFKRRNYVVQQRDDDPSESEGIGDQISRYSP 60

Query: 61  KSSFKTSMDDELPELVVFLQETDLEFVKDICIDKVVMSHEKYIKENCDTEDGFVPDMLKH 120
           KSSFKTSMDDELPELVVFLQETDLEFVKDICIDKVVMSHEKYIKENCDTEDGFVPDMLKH
Sbjct: 61  KSSFKTSMDDELPELVVFLQETDLEFVKDICIDKVVMSHEKYIKENCDTEDGFVPDMLKH 120

Query: 121 NTPESDCESSEESEYLESSVSSTESTQILGEDLFNKVNEKQKDYSSEVSIMKSVPILFLD 180
           NTPESDCESSEESEYLESSVSSTESTQILGEDLFNKVNEKQKDYSSEVSIMKSVPILFLD
Sbjct: 121 NTPESDCESSEESEYLESSVSSTESTQILGEDLFNKVNEKQKDYSSEVSIMKSVPILFLD 180

Query: 181 RKVTGKKEAASTNSIARSLTKILDENGHKGKAVARSKSNFELGSNWTAGCRHCHDCGSTS 240
           RKVTGKKEAASTNSIARSLTKILDENGHKGKAVARSKSNFELGSNWTAGCRHCHDCGSTS
Sbjct: 181 RKVTGKKEAASTNSIARSLTKILDENGHKGKAVARSKSNFELGSNWTAGCRHCHDCGSTS 240

Query: 241 MAEDDTPENHQHEDGSSAAHHLRPSLSSSLGSASLKSNSSTNSSHSFSFPMYVILETEWI 300
           MAEDDTPENHQHEDGSSAAHHLRPSLSSSLGSASLKSNSSTNSSHSFSFP   ILETEWI
Sbjct: 241 MAEDDTPENHQHEDGSSAAHHLRPSLSSSLGSASLKSNSSTNSSHSFSFP---ILETEWI 300

Query: 301 GSPERMAKADPLQTLRTRRRQLWRRCFPCCNF 333
           GSPERMAKADPLQTLRTRRRQLWRRCFPCCNF
Sbjct: 301 GSPERMAKADPLQTLRTRRRQLWRRCFPCCNF 329

[Close]

BLAST of Carg17878 vs. NCBI nr
Match: XP_022921464.1 (uncharacterized protein LOC111429731 isoform X3 [Cucurbita moschata])

HSP 1 Score: 624.0 bits (1608), Expect = 2.9e-175
Identity = 320/325 (98.46%), Postives = 322/325 (99.08%), Query Frame = 0


Query: 8   LVVNNMHKSRSMEKTEWKVDVESFKRRNYVVQQRDDDPSESEGIGDQISRYSPKSSFKTS 67
           ++VNNMHKSRSMEKTEWKVDVESFKRRNYVVQQRDDDPSESEGIGDQISRYSPKSSFKTS
Sbjct: 1   MIVNNMHKSRSMEKTEWKVDVESFKRRNYVVQQRDDDPSESEGIGDQISRYSPKSSFKTS 60

Query: 68  MDDELPELVVFLQETDLEFVKDICIDKVVMSHEKYIKENCDTEDGFVPDMLKHNTPESDC 127
           MDDELPELVVFLQETDLEFVKDICIDKVVMSHEKYIKENCDTEDGFVPDMLKHNTPESDC
Sbjct: 61  MDDELPELVVFLQETDLEFVKDICIDKVVMSHEKYIKENCDTEDGFVPDMLKHNTPESDC 120

Query: 128 ESSEESEYLESSVSSTESTQILGEDLFNKVNEKQKDYSSEVSIMKSVPILFLDRKVTGKK 187
           ESSEESEYLESSVSSTESTQILGEDLFNKVNEKQKDYSSEVSIMKSVPILFLDRKVTGKK
Sbjct: 121 ESSEESEYLESSVSSTESTQILGEDLFNKVNEKQKDYSSEVSIMKSVPILFLDRKVTGKK 180

Query: 188 EAASTNSIARSLTKILDENGHKGKAVARSKSNFELGSNWTAGCRHCHDCGSTSMAEDDTP 247
           EAASTNSIARSLTKILDENGHKGKAVARSKSNFELGSNWTAGCRHCHDCGSTSMAEDDTP
Sbjct: 181 EAASTNSIARSLTKILDENGHKGKAVARSKSNFELGSNWTAGCRHCHDCGSTSMAEDDTP 240

Query: 248 ENHQHEDGSSAAHHLRPSLSSSLGSASLKSNSSTNSSHSFSFPMYVILETEWIGSPERMA 307
           ENHQHEDGSSAAHHLRPSLSSSLGSASLKSNSSTNSSHSFSFP   ILETEWIGSPERMA
Sbjct: 241 ENHQHEDGSSAAHHLRPSLSSSLGSASLKSNSSTNSSHSFSFP---ILETEWIGSPERMA 300

Query: 308 KADPLQTLRTRRRQLWRRCFPCCNF 333
           KADPLQTLRTRRRQLWRRCFPCCNF
Sbjct: 301 KADPLQTLRTRRRQLWRRCFPCCNF 322

[Close]

BLAST of Carg17878 vs. NCBI nr
Match: XP_022921465.1 (uncharacterized protein LOC111429731 isoform X4 [Cucurbita moschata])

HSP 1 Score: 615.9 bits (1587), Expect = 7.9e-173
Identity = 317/320 (99.06%), Postives = 317/320 (99.06%), Query Frame = 0


Query: 13  MHKSRSMEKTEWKVDVESFKRRNYVVQQRDDDPSESEGIGDQISRYSPKSSFKTSMDDEL 72
           MHKSRSMEKTEWKVDVESFKRRNYVVQQRDDDPSESEGIGDQISRYSPKSSFKTSMDDEL
Sbjct: 1   MHKSRSMEKTEWKVDVESFKRRNYVVQQRDDDPSESEGIGDQISRYSPKSSFKTSMDDEL 60

Query: 73  PELVVFLQETDLEFVKDICIDKVVMSHEKYIKENCDTEDGFVPDMLKHNTPESDCESSEE 132
           PELVVFLQETDLEFVKDICIDKVVMSHEKYIKENCDTEDGFVPDMLKHNTPESDCESSEE
Sbjct: 61  PELVVFLQETDLEFVKDICIDKVVMSHEKYIKENCDTEDGFVPDMLKHNTPESDCESSEE 120

Query: 133 SEYLESSVSSTESTQILGEDLFNKVNEKQKDYSSEVSIMKSVPILFLDRKVTGKKEAAST 192
           SEYLESSVSSTESTQILGEDLFNKVNEKQKDYSSEVSIMKSVPILFLDRKVTGKKEAAST
Sbjct: 121 SEYLESSVSSTESTQILGEDLFNKVNEKQKDYSSEVSIMKSVPILFLDRKVTGKKEAAST 180

Query: 193 NSIARSLTKILDENGHKGKAVARSKSNFELGSNWTAGCRHCHDCGSTSMAEDDTPENHQH 252
           NSIARSLTKILDENGHKGKAVARSKSNFELGSNWTAGCRHCHDCGSTSMAEDDTPENHQH
Sbjct: 181 NSIARSLTKILDENGHKGKAVARSKSNFELGSNWTAGCRHCHDCGSTSMAEDDTPENHQH 240

Query: 253 EDGSSAAHHLRPSLSSSLGSASLKSNSSTNSSHSFSFPMYVILETEWIGSPERMAKADPL 312
           EDGSSAAHHLRPSLSSSLGSASLKSNSSTNSSHSFSFP   ILETEWIGSPERMAKADPL
Sbjct: 241 EDGSSAAHHLRPSLSSSLGSASLKSNSSTNSSHSFSFP---ILETEWIGSPERMAKADPL 300

Query: 313 QTLRTRRRQLWRRCFPCCNF 333
           QTLRTRRRQLWRRCFPCCNF
Sbjct: 301 QTLRTRRRQLWRRCFPCCNF 317

[Close]

BLAST of Carg17878 vs. NCBI nr
Match: XP_023516092.1 (uncharacterized protein LOC111780061 isoform X1 [Cucurbita pepo subsp. pepo] >XP_023516093.1 uncharacterized protein LOC111780061 isoform X1 [Cucurbita pepo subsp. pepo] >XP_023516094.1 uncharacterized protein LOC111780061 isoform X1 [Cucurbita pepo subsp. pepo] >XP_023516095.1 uncharacterized protein LOC111780061 isoform X1 [Cucurbita pepo subsp. pepo] >XP_023516096.1 uncharacterized protein LOC111780061 isoform X1 [Cucurbita pepo subsp. pepo] >XP_023516097.1 uncharacterized protein LOC111780061 isoform X1 [Cucurbita pepo subsp. pepo] >XP_023516098.1 uncharacterized protein LOC111780061 isoform X1 [Cucurbita pepo subsp. pepo] >XP_023516099.1 uncharacterized protein LOC111780061 isoform X1 [Cucurbita pepo subsp. pepo] >XP_023516100.1 uncharacterized protein LOC111780061 isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 605.5 bits (1560), Expect = 1.1e-169
Identity = 314/332 (94.58%), Postives = 322/332 (96.99%), Query Frame = 0


Query: 1   MRSEFSDLVVNNMHKSRSMEKTEWKVDVESFKRRNYVVQQRDDDPSESEGIGDQISRYSP 60
           MRSEFSDLVVNNMHKSRSMEK+EWKVDVESFKRRNYVVQ+RDDDPSESE IGD+ISRYS 
Sbjct: 1   MRSEFSDLVVNNMHKSRSMEKSEWKVDVESFKRRNYVVQERDDDPSESEAIGDRISRYST 60

Query: 61  KSSFKTSMDDELPELVVFLQETDLEFVKDICIDKVVMSHEKYIKENCDTEDGFVPDMLKH 120
           KSSFKTSMDDELPELVVFLQETDLEFVKDICIDKVVMSHEK I+ENCDTE+G VPDMLKH
Sbjct: 61  KSSFKTSMDDELPELVVFLQETDLEFVKDICIDKVVMSHEKCIEENCDTENGLVPDMLKH 120

Query: 121 NTPESDCESSEESEYLESSVSSTESTQILGEDLFNKVNEKQKDYSSEVSIMKSVPILFLD 180
           NTPESDCESSEESEYLESSVSSTESTQIL EDLFNKVNEKQKDYSSEVSIMKSVPILFLD
Sbjct: 121 NTPESDCESSEESEYLESSVSSTESTQILEEDLFNKVNEKQKDYSSEVSIMKSVPILFLD 180

Query: 181 RKVTGKKEAASTNSIARSLTKILDENGHKGKAVARSKSNFELGSNWTAGCRHCHDCGSTS 240
           RKVTGKKEAASTNSIARSLTKILDEN HKGKAVARSKSNFELGS WTAGCRHCHDCGSTS
Sbjct: 181 RKVTGKKEAASTNSIARSLTKILDENRHKGKAVARSKSNFELGSTWTAGCRHCHDCGSTS 240

Query: 241 MAEDDTPENHQHEDGSSAAHHLRPSLSSSLGSASLKSNSSTNSSHSFSFPMYVILETEWI 300
           MAEDDTPENHQ+EDGSSAAHHLRPSLSSSLGSASLKSNSSTNSSHSFSFP   ILETEWI
Sbjct: 241 MAEDDTPENHQNEDGSSAAHHLRPSLSSSLGSASLKSNSSTNSSHSFSFP---ILETEWI 300

Query: 301 GSPERMAKADPLQTLRTRRRQLWRRCFPCCNF 333
           GSPERMAKADPLQTLRTR++QLWRRCFPCCNF
Sbjct: 301 GSPERMAKADPLQTLRTRKQQLWRRCFPCCNF 329

[Close]

BLAST of Carg17878 vs. TrEMBL
Match: tr|A0A1S3BVX8|A0A1S3BVX8_CUCME (uncharacterized protein LOC103494068 OS=Cucumis melo OX=3656 GN=LOC103494068 PE=4 SV=1)

HSP 1 Score: 365.5 bits (937), Expect = 1.2e-97
Identity = 229/364 (62.91%), Postives = 263/364 (72.25%), Query Frame = 0


Query: 1   MRSEFSDLVVNNMHKSRSMEKTEWKV-DVESFKRRNYVVQQRDDDPSESEGIGDQISRYS 60
           MR+EFSDLVV+NM KSR +EK + KV D+E FKRRNYVVQ+RD  PSESE  GD++SRYS
Sbjct: 1   MRNEFSDLVVDNMKKSRKVEKNKLKVDDIEFFKRRNYVVQERDAGPSESEASGDRMSRYS 60

Query: 61  PKSSFKTSMDDELPELVVFLQETDLEFVKDICIDKVVMSHEKYIKENCDTEDGFVPDMLK 120
            KSS K+S++DELPELVVFLQET+ EFVKDICID+ V S +K  KE+C TE+  VP MLK
Sbjct: 61  SKSSVKSSIEDELPELVVFLQETNYEFVKDICIDEAVTSRQKCFKESCHTENDHVPCMLK 120

Query: 121 HNTPESDCESSEESEYLESSVSSTESTQILGEDLFNKVNEKQK------DYSSEVSIMKS 180
           +N  E+D ES+EES   +S++SS ESTQ L E+ FN+V EKQK      D  SEV   KS
Sbjct: 121 YNAGETDAESTEESNDSDSTISSIESTQTL-EENFNEVYEKQKVHSDAIDVPSEVPRKKS 180

Query: 181 VPILFLDRKVTGKKEAASTNSIARSLTKILDENGHKGKAVAR--------------SKSN 240
           VP LFLDRKVTGKK A+STNSIA SL KILDEN +KGKAVAR              S+S 
Sbjct: 181 VPKLFLDRKVTGKKAASSTNSIAISLNKILDENRNKGKAVARSNIEHGKNFCNSGLSQST 240

Query: 241 FELG-SNWTAGCRHCHDCGSTSMAE--DDTPEN-------HQHEDGSSAAHHL-RPSLSS 300
            E G SNWTAGC HCHDC   +MAE  D TPEN       H    G  + + + RPS+SS
Sbjct: 241 IEGGSSNWTAGCGHCHDC---TMAEYKDYTPENETGLYSSHCSSAGDPSLNSVRRPSMSS 300

Query: 301 SLGSASLKSNSSTNSSHSFSFPMYVILETEWIGSPERMAKADPLQTLRTRRRQLWRRCFP 333
            LGS SL+SNSSTNSSHSF+FP   IL TEW GSPERMAKADPLQ   TRRRQLWR CFP
Sbjct: 301 YLGSGSLRSNSSTNSSHSFAFP---ILPTEWNGSPERMAKADPLQ---TRRRQLWRLCFP 354

[Close]

BLAST of Carg17878 vs. TrEMBL
Match: tr|A0A0A0LRX2|A0A0A0LRX2_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G015630 PE=4 SV=1)

HSP 1 Score: 339.3 bits (869), Expect = 9.4e-90
Identity = 217/363 (59.78%), Postives = 250/363 (68.87%), Query Frame = 0


Query: 1   MRSEFSDLVVNNMHKSRSMEKTEWKV-DVESFKRRNYVVQQRDDDPSESEGIGDQISRYS 60
           MR+EFSDLVV+NM KSR +EK + KV D+E FKRRNYVVQ+ D  PSESE  GD++SRYS
Sbjct: 1   MRNEFSDLVVDNMKKSRKVEKNKLKVDDIEFFKRRNYVVQESDAGPSESEASGDRMSRYS 60

Query: 61  PKSSFKTSMDDELPELVVFLQETDLEFVKDICIDKVVMSHEKYIKENCDTEDGFVPDMLK 120
            KSS K+S++DELPELVVFLQET+ EFVKDICID+ V S EK  +E+C TE+  VP MLK
Sbjct: 61  SKSSVKSSIEDELPELVVFLQETNYEFVKDICIDEAVTSREKCFEESCHTENDHVPCMLK 120

Query: 121 HNTPESDCESSEESEYLESSVSSTESTQILGEDLFNKVNEKQKDYS-------SEVSIMK 180
           +N  E+D ES+EE                  ++ FN+V EKQK +S       SEV   K
Sbjct: 121 YNAGETDAESTEEXXXXXXXXXXXXXXXXXXKN-FNEVYEKQKFHSDAIDEVPSEVPHKK 180

Query: 181 SVPILFLDRKVTGKKEAASTNSIARSLTKILDENGHKGKAVAR--------------SKS 240
           SVP LFLDRKVTGKKEA+STNSIA SL KILDEN +KGKAVAR              S+S
Sbjct: 181 SVPKLFLDRKVTGKKEASSTNSIAISLNKILDENKNKGKAVARSNIEHGSICRNSGLSQS 240

Query: 241 NFELG-SNWTAGCRHCHDCGSTSMAEDDTPEN-------HQHEDGSSAAHHL-RPSLSSS 300
             E G SNWTAGC HC DC   +MAE  TPEN       H    G  + + + RPSLSS 
Sbjct: 241 TVEGGSSNWTAGCGHCRDC---TMAEYYTPENETGLYSSHCSSAGDPSLNSVRRPSLSSY 300

Query: 301 LGSASLKSNSSTNSSHSFSFPMYVILETEWIGSPERMAKADPLQTLRTRRRQLWRRCFPC 333
           LGS SL+SNSSTNSSHSF+FP   IL TEW GSPERMAKADPLQ   TRRR+LWR CFPC
Sbjct: 301 LGSGSLRSNSSTNSSHSFAFP---ILPTEWNGSPERMAKADPLQ---TRRRKLWRLCFPC 353

[Close]

BLAST of Carg17878 vs. TrEMBL
Match: tr|A0A251PBM7|A0A251PBM7_PRUPE (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_5G210100 PE=4 SV=1)

HSP 1 Score: 102.8 bits (255), Expect = 1.5e-18
Identity = 125/377 (33.16%), Postives = 176/377 (46.68%), Query Frame = 0


Query: 1   MRSEFSDLVVN-------NMHKSRSMEKT----EWKVDVESFKRR--NYVVQQRDDDPSE 60
           ++SE S++V N       +MH  R+  +     +WK  V+   +   +Y     D + S 
Sbjct: 56  LKSEDSEVVPNQHPDDSRDMHAVRNASRASGYMDWKDSVDGNGQHIPHYTCTCSDKEESR 115

Query: 61  SEGIGDQISRYSPKSSFKTSMDDELPELVVFLQE-TDLEFVKDICIDKVVMSHEKYIKEN 120
              +G               MD+ELPELV FLQE ++ +  KDICIDK V S EKY+ EN
Sbjct: 116 ERKVG---------------MDNELPELVAFLQESSNYQCFKDICIDKEVPSQEKYLVEN 175

Query: 121 CDTEDGFVPDMLKHNTPESDCESSEES--EYLESSVS-STE-------STQILGEDL--- 180
           C+ +   +  +L     +SD +SS ES  E L+S  S STE       S Q   ++L   
Sbjct: 176 CELDHSRISCIL-----DSDMDSSSESIGETLDSESSISTEHDCDKDVSEQCGSKNLKIE 235

Query: 181 FNKVNEKQKDYSSEVSIMKSVPILFLDRKVTGKKEAASTNSIARSLTKILDENGHKGKAV 240
             K +  + D+S++ ++ +++ I+       G   A   NS+  S ++ +D+N    KA 
Sbjct: 236 DEKYSGDRDDHSTKKTVSETLLIV-----RQGPNNAVLANSMVLSKSQAIDDNSRTSKAS 295

Query: 241 ARS---------KSN----FELGSNWTAGCRHCHDCGSTSMAEDDTPENHQHEDGSSAAH 300
            RS         K N     + G         CH     +M   D+      EDG SA+ 
Sbjct: 296 VRSDLDDASSLGKLNGIITIDDGREEVTQSAECHPPDIGNMFRPDS-----SEDGMSASE 355

Query: 301 HLR--PSLSS---SLGSASLKSNSSTNSSHSFSFPMYVILETEWIGSPERMAKADPLQTL 333
                 +LS    S GS SL+SNSST SS SF+FP   IL +EW GSP RM KADP Q  
Sbjct: 356 PCSGLSALSGGIPSCGSISLRSNSSTTSSQSFAFP---ILSSEWNGSPARMGKADPRQLQ 397

[Close]

BLAST of Carg17878 vs. TrEMBL
Match: tr|A0A251PBL0|A0A251PBL0_PRUPE (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_5G210100 PE=4 SV=1)

HSP 1 Score: 102.8 bits (255), Expect = 1.5e-18
Identity = 125/377 (33.16%), Postives = 176/377 (46.68%), Query Frame = 0


Query: 1   MRSEFSDLVVN-------NMHKSRSMEKT----EWKVDVESFKRR--NYVVQQRDDDPSE 60
           ++SE S++V N       +MH  R+  +     +WK  V+   +   +Y     D + S 
Sbjct: 45  LKSEDSEVVPNQHPDDSRDMHAVRNASRASGYMDWKDSVDGNGQHIPHYTCTCSDKEESR 104

Query: 61  SEGIGDQISRYSPKSSFKTSMDDELPELVVFLQE-TDLEFVKDICIDKVVMSHEKYIKEN 120
              +G               MD+ELPELV FLQE ++ +  KDICIDK V S EKY+ EN
Sbjct: 105 ERKVG---------------MDNELPELVAFLQESSNYQCFKDICIDKEVPSQEKYLVEN 164

Query: 121 CDTEDGFVPDMLKHNTPESDCESSEES--EYLESSVS-STE-------STQILGEDL--- 180
           C+ +   +  +L     +SD +SS ES  E L+S  S STE       S Q   ++L   
Sbjct: 165 CELDHSRISCIL-----DSDMDSSSESIGETLDSESSISTEHDCDKDVSEQCGSKNLKIE 224

Query: 181 FNKVNEKQKDYSSEVSIMKSVPILFLDRKVTGKKEAASTNSIARSLTKILDENGHKGKAV 240
             K +  + D+S++ ++ +++ I+       G   A   NS+  S ++ +D+N    KA 
Sbjct: 225 DEKYSGDRDDHSTKKTVSETLLIV-----RQGPNNAVLANSMVLSKSQAIDDNSRTSKAS 284

Query: 241 ARS---------KSN----FELGSNWTAGCRHCHDCGSTSMAEDDTPENHQHEDGSSAAH 300
            RS         K N     + G         CH     +M   D+      EDG SA+ 
Sbjct: 285 VRSDLDDASSLGKLNGIITIDDGREEVTQSAECHPPDIGNMFRPDS-----SEDGMSASE 344

Query: 301 HLR--PSLSS---SLGSASLKSNSSTNSSHSFSFPMYVILETEWIGSPERMAKADPLQTL 333
                 +LS    S GS SL+SNSST SS SF+FP   IL +EW GSP RM KADP Q  
Sbjct: 345 PCSGLSALSGGIPSCGSISLRSNSSTTSSQSFAFP---ILSSEWNGSPARMGKADPRQLQ 386

[Close]

BLAST of Carg17878 vs. TrEMBL
Match: tr|A0A2P6P378|A0A2P6P378_ROSCH (Uncharacterized protein OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr7g0183741 PE=4 SV=1)

HSP 1 Score: 99.4 bits (246), Expect = 1.6e-17
Identity = 95/306 (31.05%), Postives = 143/306 (46.73%), Query Frame = 0


Query: 60  PKSSFKTSMDDELPELVVFLQETDLEFVKDICIDKVVMSHEKYIKENCDTEDGFVPDMLK 119
           P   +K ++D +LPELV FLQ++  EFVKDICID  V+S  K ++ENCD     V  M+ 
Sbjct: 83  PDEKWKAAIDCDLPELVAFLQDSSHEFVKDICIDSEVLSQNKCLEENCDLNLNSVSCMVS 142

Query: 120 ---------------HNTPESDCESSEESEYL----ESSVSSTESTQILGEDLFNKVNEK 179
                                       SE++     S  S  E   I   + F + ++ 
Sbjct: 143 SXXXXXXXXXXXXXXXXXXXXXXXXXXXSEHVCKEDVSKQSGFEDLTIEDGEHFGETDDT 202

Query: 180 QKDYSSEVSIMKSVPILFLDRKVTGKKEAASTNSIARSLTKILDENGHKGKAVARSKSNF 239
             D+S++ ++ +++  +  D       +A  ++S+  S T+ +D+N     ++  +  N 
Sbjct: 203 SSDHSTKKTVSETLLQIRQD-----PTKAVLSDSVVVSSTEAIDDNRRSKNSLKSALENA 262

Query: 240 ELGSNWTAGCRHCHDCGSTSMAEDDTPENHQHEDGSSAAHHL-RPSLSS----------- 299
             G  +        +C S + +ED   +N    + S + HHL R S SS           
Sbjct: 263 RRGEIFPPSV----ECHSRNSSEDGMSDN--VTESSQSQHHLCRESSSSVSGHLAIYSGA 322

Query: 300 --SLGSASLKSNSSTNSSHSFSFPMYVILETEWIGSPERMAKADPLQTLRTRRRQLWRRC 333
             S GS S +SNSST SS SF+FP   IL +EW+GSP RM +AD  Q  R RR   W   
Sbjct: 323 IPSFGSISFRSNSSTTSSRSFTFP---ILSSEWVGSPVRMVEADRTQLRRHRR---WGVR 371

The following BLAST results are available for this feature:

BLAST of Carg17878 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022921457.1	1.5e-179	99.10	uncharacterized protein LOC111429731 isoform X1 [Cucurbita moschata] >XP_0229214...	[more]
XP_022921460.1	1.5e-179	99.10	uncharacterized protein LOC111429731 isoform X2 [Cucurbita moschata] >XP_0229214...	[more]
XP_022921464.1	2.9e-175	98.46	uncharacterized protein LOC111429731 isoform X3 [Cucurbita moschata]	[more]
XP_022921465.1	7.9e-173	99.06	uncharacterized protein LOC111429731 isoform X4 [Cucurbita moschata]	[more]
XP_023516092.1	1.1e-169	94.58	uncharacterized protein LOC111780061 isoform X1 [Cucurbita pepo subsp. pepo] >XP...	[more]

BLAST of Carg17878 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of Carg17878 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Carg17878 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3BVX8\|A0A1S3BVX8_CUCME	1.2e-97	62.91	uncharacterized protein LOC103494068 OS=Cucumis melo OX=3656 GN=LOC103494068 PE=...	[more]
tr\|A0A0A0LRX2\|A0A0A0LRX2_CUCSA	9.4e-90	59.78	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G015630 PE=4 SV=1	[more]
tr\|A0A251PBM7\|A0A251PBM7_PRUPE	1.5e-18	33.16	Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_5G210100 PE=4 SV=1	[more]
tr\|A0A251PBL0\|A0A251PBL0_PRUPE	1.5e-18	33.16	Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_5G210100 PE=4 SV=1	[more]
tr\|A0A2P6P378\|A0A2P6P378_ROSCH	1.6e-17	31.05	Uncharacterized protein OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr7g0183741 PE=4...	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg17878-RA	Carg17878-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 240..284
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 240..259
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 261..284
None	No IPR available	PANTHER	PTHR33914	FAMILY NOT NAMED	coord: 36..175 coord: 269..332

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg17878	Cla019035	Watermelon (97103) v1	carwmB0461
Carg17878	Csa1G015630	Cucumber (Chinese Long) v2	carcuB0494
Carg17878	MELO3C017252	Melon (DHL92) v3.5.1	carmeB0469
Carg17878	ClCG06G015430	Watermelon (Charleston Gray)	carwcgB0451
Carg17878	CSPI01G03290	Wild cucumber (PI 183967)	carcpiB0500
Carg17878	Cucsa.198580	Cucumber (Gy14) v1	carcgyB0534
Carg17878	CmaCh11G002270	Cucurbita maxima (Rimu)	carcmaB0641
Carg17878	CmaCh10G002820	Cucurbita maxima (Rimu)	carcmaB0640
Carg17878	CmoCh11G002300	Cucurbita moschata (Rifu)	carcmoB0623
Carg17878	Lsi06G013900	Bottle gourd (USVL1VR-Ls)	carlsiB420
Carg17878	Cp4.1LG18g07110	Cucurbita pepo (Zucchini)	carcpeB0646
Carg17878	Cp4.1LG04g14450	Cucurbita pepo (Zucchini)	carcpeB0651
Carg17878	CsGy1G003250	Cucumber (Gy14) v2	carcgybB0471
Carg17878	MELO3C017252.2	Melon (DHL92) v3.6.1	carmedB0472
Carg17878	CsaV3_1G003330	Cucumber (Chinese Long) v3	carcucB0497
Carg17878	Cla97C06G124950	Watermelon (97103) v2	carwmbB0487
Carg17878	Bhi02G000042	Wax gourd	carwgoB0563

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Carg17878	Carg09186	Silver-seed gourd	carcarB459

The following block(s) are covering this gene:


Gene	Organism	Block
Carg17878	Cucurbita maxima (Rimu)	carcmaB0645
Carg17878	Silver-seed gourd	carcarB410
Carg17878	Cucumber (Gy14) v2	carcgybB0468
Carg17878	Cucumber (Gy14) v2	carcgybB0469
Carg17878	Cucumber (Gy14) v1	carcgyB0530
Carg17878	Cucumber (Gy14) v1	carcgyB0532
Carg17878	Cucurbita moschata (Rifu)	carcmoB0622
Carg17878	Cucurbita moschata (Rifu)	carcmoB0626
Carg17878	Cucurbita pepo (Zucchini)	carcpeB0647
Carg17878	Wild cucumber (PI 183967)	carcpiB0497
Carg17878	Wild cucumber (PI 183967)	carcpiB0498
Carg17878	Cucumber (Chinese Long) v2	carcuB0491
Carg17878	Cucumber (Chinese Long) v2	carcuB0492
Carg17878	Cucumber (Chinese Long) v3	carcucB0494
Carg17878	Cucumber (Chinese Long) v3	carcucB0495
Carg17878	Bottle gourd (USVL1VR-Ls)	carlsiB417
Carg17878	Melon (DHL92) v3.5.1	carmeB0467
Carg17878	Melon (DHL92) v3.6.1	carmedB0470
Carg17878	Watermelon (Charleston Gray)	carwcgB0449
Carg17878	Watermelon (97103) v1	carwmB0459
Carg17878	Watermelon (97103) v2	carwmbB0484
Carg17878	Wax gourd	carwgoB0560