Carg17704 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg17704
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Pentatricopeptide repeat-containing protein
Location	Cucurbita_argyrosperma_scaffold_082 : 51150 .. 53465 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTACTTTTCTTTCGCAGTCTTTTCCACGTTAGTCGCAGAGCCTCTTACCGAGTAATCTCTCTATCTTTGAATTCCTCGCATCCGGGTTGCCTTTCTTTCAATGTATTTAATGGCCCATCATCGTTAACGTCAATGAATGGCTACTACATTTCTTGCCCCTTTTTCTGGTTCACTAGCTTTCTTTGTATATTTCGGCTCCCTTTTGTTAGTTACTCGATTACAAATGATTCTTTTGAACTTTTAGACATTGGTTCCCTTCGTAAAATTATACAACAAGACCTCTGGAATGATCCTAAGATTGTTGTTTTATTTGATTCAGCACTAGCGCCCATTTGGGTTTCTAAGATTTTAGTTGAATTGAAAGAAGATCCAAAATTAGCCCTTAAGTTCTTCAAATGGGCTGGAACCCATATTGGTTTCCGCCATACCACAGAGTCTTACTGCATTATAGTTCACATGCTGTTTCGTGCGAGAATGTACACAAATGCCCATGATATTATGAAAGAAATGGTTTTGAAGAGCCGTACTGACTTGATTTTACCCGTTTGTAATGTATTTGATATTTTATGGTCGACTAGGAACTTTTGTGTGTCAGGAACAGGAGTCTTTGACGTTTTGTTTAGTGTTTTGGTAGAGTTGGGTCTGCTTGAGGAAGCTAATGAATGTTTCTCAAAAATGAGGAAGTTTAGGACTCTTCCCAAAGCACGTTCTTGCAATTTTCTCTTGCATAGATTATCAAAGTCAGGGAATGGACAGTTGGTGAGGAAATTTTTCCATGACATGATTGGGGCTGGTATTGCACCTTCAGTTTTTACCTACAATGTAATGATAGATCACTTGTGCAAAGAAGGGGATGTGGAAAATGCCAGAAGTTTGTTTGTGCAAATGAGGACGATGGGCTTTTCTCCAGATGTTGTCACATATAATTCTTTGATTGATGGCTATGGCAAGGTTGGTTTATTGAAAGAATCTGTGTATTTATTTAATGAAATGAAGGATGTAGGTTGTGTTCCTGATGTAATTACCTATAATGCTTTGATAAATTGTTTCTGCAAGTTTGAGAAGATGCCTCAAGCTTTTGAGTATCTCTCTGAGATGAAGAACAATGGGTTAAAACCAAATGTTGTAACCTATAGCACATTGATTGATGCTTTTTGCAAGGAGGGAATGATGCAAGGTGCCATTAAACTTTTTGTTGATATGAGAAGAGTTGGGCTTTTACCTAATGAATTCACATACACTTCTCTGATTGATGCCAATTGTAAGGCAGGTAATTTAACCGAAGCATGGAAGTTGTCCAATGATATGTTGCAAGCAGGAGTTAATTTAAACATAGTCACCTATACAGCTCTAATGGATGGCCTTTGTGAGGATGGAAGAATGATGGAAGCAGAAGAAGTGTTTAGGGCAATGCTGAAAGATGGAATATCTCCCAACCAGCAGGTTTACACTGCTTTGGTTCATGGCTATATTAAGGCGGAGAAAATGGAAGATGCTTTGGAAATATTGAAGCAAATGACCGAATGTGGCATCAAACCAGATTTAGTACTTTATGGCACCATTATTTGGGGTCTCTGTAATCAAAATAAACTTGAAGAAACTAAGCTTATTATTAAAGAAATGAAAAAACGGGGTATCCGTGCAAATCCTGTTATATATACAACAATTATAGATGCTTATTTTAAGGCTGGAAAAAGCTCAGATGCATTGGATCTTCTTCAGGAGATGCAGGAAGTAGGTGTTGAGGCAACCGTTGTAACCTACTGTGTATTAATTGATGGCTTGTGCAAAACAGGTATGGTGGAAGTGGCAGTTGATTATTTCGGTAGAATGTCTGATTTTGGTGTACAGCCTAATGTTGCAGTTTATACGGCCCTCATTGATGGTCTTTGTAAAATTAATTGCATTGAATCTGCCAAAAAGTTGTTTGATGAAATGCAATGTAGAGGTATGACTCCGGATAAAACAGCTTTCACTGCTCTAATTGATGGCAACTTGAAGCTTGGAAATCTTCAGGAAGCTTTGAATTTGATTAGCAAAATGACAGAATTAGTTATTGAGTTTGATTTGCATGCTTATACGACCTTGGTTTCGGGATTTTCTCAATGTGGTGAGCTGCACCAAGCGAGGAAGTTCTTTAATGAGATGATTGAGAAGGGCATACTTCCCGACGAAATTTTATGCATATGTCTATTGAGGGAGTATAACAAGCTTGGACATTTGGATGAAGCCATCGAATTGAAGAACGAAATGCAAAGGAGGGGTTTAGTTACTGAAAAGTGCAGCCATGAAGTTCCCAGTCCAAAAACTTGA

mRNA sequence

ATGTTACTTTTCTTTCGCAGTCTTTTCCACGTTAGTCGCAGAGCCTCTTACCGAGTAATCTCTCTATCTTTGAATTCCTCGCATCCGGGTTGCCTTTCTTTCAATGTATTTAATGGCCCATCATCGTTAACGTCAATGAATGGCTACTACATTTCTTGCCCCTTTTTCTGGTTCACTAGCTTTCTTTGTATATTTCGGCTCCCTTTTGTTAGTTACTCGATTACAAATGATTCTTTTGAACTTTTAGACATTGGTTCCCTTCGTAAAATTATACAACAAGACCTCTGGAATGATCCTAAGATTGTTGTTTTATTTGATTCAGCACTAGCGCCCATTTGGGTTTCTAAGATTTTAGTTGAATTGAAAGAAGATCCAAAATTAGCCCTTAAGTTCTTCAAATGGGCTGGAACCCATATTGGTTTCCGCCATACCACAGAGTCTTACTGCATTATAGTTCACATGCTGTTTCGTGCGAGAATGTACACAAATGCCCATGATATTATGAAAGAAATGGTTTTGAAGAGCCGTACTGACTTGATTTTACCCGTTTGTAATGTATTTGATATTTTATGGTCGACTAGGAACTTTTGTGTGTCAGGAACAGGAGTCTTTGACGTTTTGTTTAGTGTTTTGGTAGAGTTGGGTCTGCTTGAGGAAGCTAATGAATGTTTCTCAAAAATGAGGAAGTTTAGGACTCTTCCCAAAGCACGTTCTTGCAATTTTCTCTTGCATAGATTATCAAAGTCAGGGAATGGACAGTTGGTGAGGAAATTTTTCCATGACATGATTGGGGCTGGTATTGCACCTTCAGTTTTTACCTACAATGTAATGATAGATCACTTGTGCAAAGAAGGGGATGTGGAAAATGCCAGAAGTTTGTTTGTGCAAATGAGGACGATGGGCTTTTCTCCAGATGTTGTCACATATAATTCTTTGATTGATGGCTATGGCAAGGTTGGTTTATTGAAAGAATCTGTGTATTTATTTAATGAAATGAAGGATGTAGGTTGTGTTCCTGATGTAATTACCTATAATGCTTTGATAAATTGTTTCTGCAAGTTTGAGAAGATGCCTCAAGCTTTTGAGTATCTCTCTGAGATGAAGAACAATGGGTTAAAACCAAATGTTGTAACCTATAGCACATTGATTGATGCTTTTTGCAAGGAGGGAATGATGCAAGGTGCCATTAAACTTTTTGTTGATATGAGAAGAGTTGGGCTTTTACCTAATGAATTCACATACACTTCTCTGATTGATGCCAATTGTAAGGCAGGTAATTTAACCGAAGCATGGAAGTTGTCCAATGATATGTTGCAAGCAGGAGTTAATTTAAACATAGTCACCTATACAGCTCTAATGGATGGCCTTTGTGAGGATGGAAGAATGATGGAAGCAGAAGAAGTGTTTAGGGCAATGCTGAAAGATGGAATATCTCCCAACCAGCAGGTTTACACTGCTTTGGTTCATGGCTATATTAAGGCGGAGAAAATGGAAGATGCTTTGGAAATATTGAAGCAAATGACCGAATGTGGCATCAAACCAGATTTAGTACTTTATGGCACCATTATTTGGGGTCTCTGTAATCAAAATAAACTTGAAGAAACTAAGCTTATTATTAAAGAAATGAAAAAACGGGGTATCCGTGCAAATCCTGTTATATATACAACAATTATAGATGCTTATTTTAAGGCTGGAAAAAGCTCAGATGCATTGGATCTTCTTCAGGAGATGCAGGAAGTAGGTGTTGAGGCAACCGTTGTAACCTACTGTGTATTAATTGATGGCTTGTGCAAAACAGGTATGGTGGAAGTGGCAGTTGATTATTTCGGTAGAATGTCTGATTTTGGTGTACAGCCTAATGTTGCAGTTTATACGGCCCTCATTGATGGTCTTTGTAAAATTAATTGCATTGAATCTGCCAAAAAGTTGTTTGATGAAATGCAATGTAGAGGTATGACTCCGGATAAAACAGCTTTCACTGCTCTAATTGATGGCAACTTGAAGCTTGGAAATCTTCAGGAAGCTTTGAATTTGATTAGCAAAATGACAGAATTAGTTATTGAGTTTGATTTGCATGCTTATACGACCTTGGTTTCGGGATTTTCTCAATGTGGTGAGCTGCACCAAGCGAGGAAGTTCTTTAATGAGATGATTGAGAAGGGCATACTTCCCGACGAAATTTTATGCATATGTCTATTGAGGGAGTATAACAAGCTTGGACATTTGGATGAAGCCATCGAATTGAAGAACGAAATGCAAAGGAGGGGTTTAGTTACTGAAAAGTGCAGCCATGAAGTTCCCAGTCCAAAAACTTGA

Coding sequence (CDS)

ATGTTACTTTTCTTTCGCAGTCTTTTCCACGTTAGTCGCAGAGCCTCTTACCGAGTAATCTCTCTATCTTTGAATTCCTCGCATCCGGGTTGCCTTTCTTTCAATGTATTTAATGGCCCATCATCGTTAACGTCAATGAATGGCTACTACATTTCTTGCCCCTTTTTCTGGTTCACTAGCTTTCTTTGTATATTTCGGCTCCCTTTTGTTAGTTACTCGATTACAAATGATTCTTTTGAACTTTTAGACATTGGTTCCCTTCGTAAAATTATACAACAAGACCTCTGGAATGATCCTAAGATTGTTGTTTTATTTGATTCAGCACTAGCGCCCATTTGGGTTTCTAAGATTTTAGTTGAATTGAAAGAAGATCCAAAATTAGCCCTTAAGTTCTTCAAATGGGCTGGAACCCATATTGGTTTCCGCCATACCACAGAGTCTTACTGCATTATAGTTCACATGCTGTTTCGTGCGAGAATGTACACAAATGCCCATGATATTATGAAAGAAATGGTTTTGAAGAGCCGTACTGACTTGATTTTACCCGTTTGTAATGTATTTGATATTTTATGGTCGACTAGGAACTTTTGTGTGTCAGGAACAGGAGTCTTTGACGTTTTGTTTAGTGTTTTGGTAGAGTTGGGTCTGCTTGAGGAAGCTAATGAATGTTTCTCAAAAATGAGGAAGTTTAGGACTCTTCCCAAAGCACGTTCTTGCAATTTTCTCTTGCATAGATTATCAAAGTCAGGGAATGGACAGTTGGTGAGGAAATTTTTCCATGACATGATTGGGGCTGGTATTGCACCTTCAGTTTTTACCTACAATGTAATGATAGATCACTTGTGCAAAGAAGGGGATGTGGAAAATGCCAGAAGTTTGTTTGTGCAAATGAGGACGATGGGCTTTTCTCCAGATGTTGTCACATATAATTCTTTGATTGATGGCTATGGCAAGGTTGGTTTATTGAAAGAATCTGTGTATTTATTTAATGAAATGAAGGATGTAGGTTGTGTTCCTGATGTAATTACCTATAATGCTTTGATAAATTGTTTCTGCAAGTTTGAGAAGATGCCTCAAGCTTTTGAGTATCTCTCTGAGATGAAGAACAATGGGTTAAAACCAAATGTTGTAACCTATAGCACATTGATTGATGCTTTTTGCAAGGAGGGAATGATGCAAGGTGCCATTAAACTTTTTGTTGATATGAGAAGAGTTGGGCTTTTACCTAATGAATTCACATACACTTCTCTGATTGATGCCAATTGTAAGGCAGGTAATTTAACCGAAGCATGGAAGTTGTCCAATGATATGTTGCAAGCAGGAGTTAATTTAAACATAGTCACCTATACAGCTCTAATGGATGGCCTTTGTGAGGATGGAAGAATGATGGAAGCAGAAGAAGTGTTTAGGGCAATGCTGAAAGATGGAATATCTCCCAACCAGCAGGTTTACACTGCTTTGGTTCATGGCTATATTAAGGCGGAGAAAATGGAAGATGCTTTGGAAATATTGAAGCAAATGACCGAATGTGGCATCAAACCAGATTTAGTACTTTATGGCACCATTATTTGGGGTCTCTGTAATCAAAATAAACTTGAAGAAACTAAGCTTATTATTAAAGAAATGAAAAAACGGGGTATCCGTGCAAATCCTGTTATATATACAACAATTATAGATGCTTATTTTAAGGCTGGAAAAAGCTCAGATGCATTGGATCTTCTTCAGGAGATGCAGGAAGTAGGTGTTGAGGCAACCGTTGTAACCTACTGTGTATTAATTGATGGCTTGTGCAAAACAGGTATGGTGGAAGTGGCAGTTGATTATTTCGGTAGAATGTCTGATTTTGGTGTACAGCCTAATGTTGCAGTTTATACGGCCCTCATTGATGGTCTTTGTAAAATTAATTGCATTGAATCTGCCAAAAAGTTGTTTGATGAAATGCAATGTAGAGGTATGACTCCGGATAAAACAGCTTTCACTGCTCTAATTGATGGCAACTTGAAGCTTGGAAATCTTCAGGAAGCTTTGAATTTGATTAGCAAAATGACAGAATTAGTTATTGAGTTTGATTTGCATGCTTATACGACCTTGGTTTCGGGATTTTCTCAATGTGGTGAGCTGCACCAAGCGAGGAAGTTCTTTAATGAGATGATTGAGAAGGGCATACTTCCCGACGAAATTTTATGCATATGTCTATTGAGGGAGTATAACAAGCTTGGACATTTGGATGAAGCCATCGAATTGAAGAACGAAATGCAAAGGAGGGGTTTAGTTACTGAAAAGTGCAGCCATGAAGTTCCCAGTCCAAAAACTTGA

Protein sequence

MLLFFRSLFHVSRRASYRVISLSLNSSHPGCLSFNVFNGPSSLTSMNGYYISCPFFWFTSFLCIFRLPFVSYSITNDSFELLDIGSLRKIIQQDLWNDPKIVVLFDSALAPIWVSKILVELKEDPKLALKFFKWAGTHIGFRHTTESYCIIVHMLFRARMYTNAHDIMKEMVLKSRTDLILPVCNVFDILWSTRNFCVSGTGVFDVLFSVLVELGLLEEANECFSKMRKFRTLPKARSCNFLLHRLSKSGNGQLVRKFFHDMIGAGIAPSVFTYNVMIDHLCKEGDVENARSLFVQMRTMGFSPDVVTYNSLIDGYGKVGLLKESVYLFNEMKDVGCVPDVITYNALINCFCKFEKMPQAFEYLSEMKNNGLKPNVVTYSTLIDAFCKEGMMQGAIKLFVDMRRVGLLPNEFTYTSLIDANCKAGNLTEAWKLSNDMLQAGVNLNIVTYTALMDGLCEDGRMMEAEEVFRAMLKDGISPNQQVYTALVHGYIKAEKMEDALEILKQMTECGIKPDLVLYGTIIWGLCNQNKLEETKLIIKEMKKRGIRANPVIYTTIIDAYFKAGKSSDALDLLQEMQEVGVEATVVTYCVLIDGLCKTGMVEVAVDYFGRMSDFGVQPNVAVYTALIDGLCKINCIESAKKLFDEMQCRGMTPDKTAFTALIDGNLKLGNLQEALNLISKMTELVIEFDLHAYTTLVSGFSQCGELHQARKFFNEMIEKGILPDEILCICLLREYNKLGHLDEAIELKNEMQRRGLVTEKCSHEVPSPKT

Homology

[Close]

BLAST of Carg17704 vs. NCBI nr
Match: XP_022959718.1 (putative pentatricopeptide repeat-containing protein At2g02150 isoform X3 [Cucurbita moschata])

HSP 1 Score: 540.8 bits (1392), Expect = 7.5e-150
Identity = 267/267 (100.00%), Postives = 267/267 (100.00%), Query Frame = 0


Query: 1   MLLFFRSLFHVSRRASYRVISLSLNSSHPGCLSFNVFNGPSSLTSMNGYYISCPFFWFTS 60
           MLLFFRSLFHVSRRASYRVISLSLNSSHPGCLSFNVFNGPSSLTSMNGYYISCPFFWFTS
Sbjct: 17  MLLFFRSLFHVSRRASYRVISLSLNSSHPGCLSFNVFNGPSSLTSMNGYYISCPFFWFTS 76

Query: 61  FLCIFRLPFVSYSITNDSFELLDIGSLRKIIQQDLWNDPKIVVLFDSALAPIWVSKILVE 120
           FLCIFRLPFVSYSITNDSFELLDIGSLRKIIQQDLWNDPKIVVLFDSALAPIWVSKILVE
Sbjct: 77  FLCIFRLPFVSYSITNDSFELLDIGSLRKIIQQDLWNDPKIVVLFDSALAPIWVSKILVE 136

Query: 121 LKEDPKLALKFFKWAGTHIGFRHTTESYCIIVHMLFRARMYTNAHDIMKEMVLKSRTDLI 180
           LKEDPKLALKFFKWAGTHIGFRHTTESYCIIVHMLFRARMYTNAHDIMKEMVLKSRTDLI
Sbjct: 137 LKEDPKLALKFFKWAGTHIGFRHTTESYCIIVHMLFRARMYTNAHDIMKEMVLKSRTDLI 196

Query: 181 LPVCNVFDILWSTRNFCVSGTGVFDVLFSVLVELGLLEEANECFSKMRKFRTLPKARSCN 240
           LPVCNVFDILWSTRNFCVSGTGVFDVLFSVLVELGLLEEANECFSKMRKFRTLPKARSCN
Sbjct: 197 LPVCNVFDILWSTRNFCVSGTGVFDVLFSVLVELGLLEEANECFSKMRKFRTLPKARSCN 256

Query: 241 FLLHRLSKSGNGQLVRKFFHDMIGAGI 268
           FLLHRLSKSGNGQLVRKFFHDMIGAGI
Sbjct: 257 FLLHRLSKSGNGQLVRKFFHDMIGAGI 283

[Close]

BLAST of Carg17704 vs. NCBI nr
Match: XP_022959725.1 (putative pentatricopeptide repeat-containing protein At2g02150 isoform X4 [Cucurbita moschata])

HSP 1 Score: 540.8 bits (1392), Expect = 7.5e-150
Identity = 267/267 (100.00%), Postives = 267/267 (100.00%), Query Frame = 0


Query: 1   MLLFFRSLFHVSRRASYRVISLSLNSSHPGCLSFNVFNGPSSLTSMNGYYISCPFFWFTS 60
           MLLFFRSLFHVSRRASYRVISLSLNSSHPGCLSFNVFNGPSSLTSMNGYYISCPFFWFTS
Sbjct: 17  MLLFFRSLFHVSRRASYRVISLSLNSSHPGCLSFNVFNGPSSLTSMNGYYISCPFFWFTS 76

Query: 61  FLCIFRLPFVSYSITNDSFELLDIGSLRKIIQQDLWNDPKIVVLFDSALAPIWVSKILVE 120
           FLCIFRLPFVSYSITNDSFELLDIGSLRKIIQQDLWNDPKIVVLFDSALAPIWVSKILVE
Sbjct: 77  FLCIFRLPFVSYSITNDSFELLDIGSLRKIIQQDLWNDPKIVVLFDSALAPIWVSKILVE 136

Query: 121 LKEDPKLALKFFKWAGTHIGFRHTTESYCIIVHMLFRARMYTNAHDIMKEMVLKSRTDLI 180
           LKEDPKLALKFFKWAGTHIGFRHTTESYCIIVHMLFRARMYTNAHDIMKEMVLKSRTDLI
Sbjct: 137 LKEDPKLALKFFKWAGTHIGFRHTTESYCIIVHMLFRARMYTNAHDIMKEMVLKSRTDLI 196

Query: 181 LPVCNVFDILWSTRNFCVSGTGVFDVLFSVLVELGLLEEANECFSKMRKFRTLPKARSCN 240
           LPVCNVFDILWSTRNFCVSGTGVFDVLFSVLVELGLLEEANECFSKMRKFRTLPKARSCN
Sbjct: 197 LPVCNVFDILWSTRNFCVSGTGVFDVLFSVLVELGLLEEANECFSKMRKFRTLPKARSCN 256

Query: 241 FLLHRLSKSGNGQLVRKFFHDMIGAGI 268
           FLLHRLSKSGNGQLVRKFFHDMIGAGI
Sbjct: 257 FLLHRLSKSGNGQLVRKFFHDMIGAGI 283

[Close]

BLAST of Carg17704 vs. NCBI nr
Match: XP_022959709.1 (putative pentatricopeptide repeat-containing protein At2g02150 isoform X2 [Cucurbita moschata])

HSP 1 Score: 540.8 bits (1392), Expect = 7.5e-150
Identity = 267/267 (100.00%), Postives = 267/267 (100.00%), Query Frame = 0


Query: 1   MLLFFRSLFHVSRRASYRVISLSLNSSHPGCLSFNVFNGPSSLTSMNGYYISCPFFWFTS 60
           MLLFFRSLFHVSRRASYRVISLSLNSSHPGCLSFNVFNGPSSLTSMNGYYISCPFFWFTS
Sbjct: 17  MLLFFRSLFHVSRRASYRVISLSLNSSHPGCLSFNVFNGPSSLTSMNGYYISCPFFWFTS 76

Query: 61  FLCIFRLPFVSYSITNDSFELLDIGSLRKIIQQDLWNDPKIVVLFDSALAPIWVSKILVE 120
           FLCIFRLPFVSYSITNDSFELLDIGSLRKIIQQDLWNDPKIVVLFDSALAPIWVSKILVE
Sbjct: 77  FLCIFRLPFVSYSITNDSFELLDIGSLRKIIQQDLWNDPKIVVLFDSALAPIWVSKILVE 136

Query: 121 LKEDPKLALKFFKWAGTHIGFRHTTESYCIIVHMLFRARMYTNAHDIMKEMVLKSRTDLI 180
           LKEDPKLALKFFKWAGTHIGFRHTTESYCIIVHMLFRARMYTNAHDIMKEMVLKSRTDLI
Sbjct: 137 LKEDPKLALKFFKWAGTHIGFRHTTESYCIIVHMLFRARMYTNAHDIMKEMVLKSRTDLI 196

Query: 181 LPVCNVFDILWSTRNFCVSGTGVFDVLFSVLVELGLLEEANECFSKMRKFRTLPKARSCN 240
           LPVCNVFDILWSTRNFCVSGTGVFDVLFSVLVELGLLEEANECFSKMRKFRTLPKARSCN
Sbjct: 197 LPVCNVFDILWSTRNFCVSGTGVFDVLFSVLVELGLLEEANECFSKMRKFRTLPKARSCN 256

Query: 241 FLLHRLSKSGNGQLVRKFFHDMIGAGI 268
           FLLHRLSKSGNGQLVRKFFHDMIGAGI
Sbjct: 257 FLLHRLSKSGNGQLVRKFFHDMIGAGI 283

[Close]

BLAST of Carg17704 vs. NCBI nr
Match: XP_022959692.1 (putative pentatricopeptide repeat-containing protein At2g02150 isoform X1 [Cucurbita moschata] >XP_022959700.1 putative pentatricopeptide repeat-containing protein At2g02150 isoform X1 [Cucurbita moschata])

HSP 1 Score: 540.8 bits (1392), Expect = 7.5e-150
Identity = 267/267 (100.00%), Postives = 267/267 (100.00%), Query Frame = 0


Query: 1   MLLFFRSLFHVSRRASYRVISLSLNSSHPGCLSFNVFNGPSSLTSMNGYYISCPFFWFTS 60
           MLLFFRSLFHVSRRASYRVISLSLNSSHPGCLSFNVFNGPSSLTSMNGYYISCPFFWFTS
Sbjct: 17  MLLFFRSLFHVSRRASYRVISLSLNSSHPGCLSFNVFNGPSSLTSMNGYYISCPFFWFTS 76

Query: 61  FLCIFRLPFVSYSITNDSFELLDIGSLRKIIQQDLWNDPKIVVLFDSALAPIWVSKILVE 120
           FLCIFRLPFVSYSITNDSFELLDIGSLRKIIQQDLWNDPKIVVLFDSALAPIWVSKILVE
Sbjct: 77  FLCIFRLPFVSYSITNDSFELLDIGSLRKIIQQDLWNDPKIVVLFDSALAPIWVSKILVE 136

Query: 121 LKEDPKLALKFFKWAGTHIGFRHTTESYCIIVHMLFRARMYTNAHDIMKEMVLKSRTDLI 180
           LKEDPKLALKFFKWAGTHIGFRHTTESYCIIVHMLFRARMYTNAHDIMKEMVLKSRTDLI
Sbjct: 137 LKEDPKLALKFFKWAGTHIGFRHTTESYCIIVHMLFRARMYTNAHDIMKEMVLKSRTDLI 196

Query: 181 LPVCNVFDILWSTRNFCVSGTGVFDVLFSVLVELGLLEEANECFSKMRKFRTLPKARSCN 240
           LPVCNVFDILWSTRNFCVSGTGVFDVLFSVLVELGLLEEANECFSKMRKFRTLPKARSCN
Sbjct: 197 LPVCNVFDILWSTRNFCVSGTGVFDVLFSVLVELGLLEEANECFSKMRKFRTLPKARSCN 256

Query: 241 FLLHRLSKSGNGQLVRKFFHDMIGAGI 268
           FLLHRLSKSGNGQLVRKFFHDMIGAGI
Sbjct: 257 FLLHRLSKSGNGQLVRKFFHDMIGAGI 283

[Close]

BLAST of Carg17704 vs. NCBI nr
Match: XP_022990898.1 (putative pentatricopeptide repeat-containing protein At2g02150 isoform X3 [Cucurbita maxima])

HSP 1 Score: 527.7 bits (1358), Expect = 6.6e-146
Identity = 260/266 (97.74%), Postives = 263/266 (98.87%), Query Frame = 0


Query: 1   MLLFFRSLFHVSRRASYRVISLSLNSSHPGCLSFNVFNGPSSLTSMNGYYISCPFFWFTS 60
           MLLFFRSLFHVSRRASYRVISLS NSSHPGCLSF+VFNGPSSLTS+NGYYISCPFFWF+S
Sbjct: 17  MLLFFRSLFHVSRRASYRVISLSFNSSHPGCLSFDVFNGPSSLTSINGYYISCPFFWFSS 76

Query: 61  FLCIFRLPFVSYSITNDSFELLDIGSLRKIIQQDLWNDPKIVVLFDSALAPIWVSKILVE 120
           FLCIFRLPFVSYSITNDSFELLDIGSLRKIIQQDLWNDPKIVVLFDSALAPIWVSKILVE
Sbjct: 77  FLCIFRLPFVSYSITNDSFELLDIGSLRKIIQQDLWNDPKIVVLFDSALAPIWVSKILVE 136

Query: 121 LKEDPKLALKFFKWAGTHIGFRHTTESYCIIVHMLFRARMYTNAHDIMKEMVLKSRTDLI 180
           LKEDPKLALKFFKWAGTH GFRHTTESYCIIVHMLFRARMYTNAHDIMKEMVLKSRTDLI
Sbjct: 137 LKEDPKLALKFFKWAGTHFGFRHTTESYCIIVHMLFRARMYTNAHDIMKEMVLKSRTDLI 196

Query: 181 LPVCNVFDILWSTRNFCVSGTGVFDVLFSVLVELGLLEEANECFSKMRKFRTLPKARSCN 240
           LPVCNVFDILWSTRNFCVSGTGVFDVLFSVLVELGLLEEANECFSKMRKFRTLPKARSCN
Sbjct: 197 LPVCNVFDILWSTRNFCVSGTGVFDVLFSVLVELGLLEEANECFSKMRKFRTLPKARSCN 256

Query: 241 FLLHRLSKSGNGQLVRKFFHDMIGAG 267
           FLLHRLSKSGNGQLVRKFF DMIGAG
Sbjct: 257 FLLHRLSKSGNGQLVRKFFDDMIGAG 282

[Close]

BLAST of Carg17704 vs. TAIR10
Match: AT2G02150.1 (Tetratricopeptide repeat (TPR)-like superfamily protein)

HSP 1 Score: 257.7 bits (657), Expect = 2.3e-68
Identity = 136/251 (54.18%), Postives = 169/251 (67.33%), Query Frame = 0


Query: 1   MLLFFRSLFHVSRRASYRVISLSLNSSH---PGCLSFNVFNGPSSLTSMNGYYISCPFFW 60
           M    R+  HV+RR    V   S + S    P C         SS +     +ISCPF W
Sbjct: 1   MFCSLRNFLHVNRRFPRHVSPSSSSLSQIQSPLCFPL------SSPSPSQSSFISCPFVW 60

Query: 61  FTSFLCIFRLPFVSYSITNDSFELLDIGSLRKIIQQDLWNDPKIVVLFDSALAPIWVSKI 120
           FTSFLCI R PFV+ S T+   E  D   +RK++  DLW+DP +  LFD  LAPIWV ++
Sbjct: 61  FTSFLCIIRYPFVTKSGTSTYSEDFDRDWIRKVVHNDLWDDPGLEKLFDLTLAPIWVPRV 120

Query: 121 LVELKEDPKLALKFFKWAGTHIGFRHTTESYCIIVHMLFRARMYTNAHDIMKEMVLKSRT 180
           LVELKEDPKLA KFFKW+ T  GF+H+ ESYCI+ H+LF ARMY +A+ ++KEMVL S+ 
Sbjct: 121 LVELKEDPKLAFKFFKWSMTRNGFKHSVESYCIVAHILFCARMYYDANSVLKEMVL-SKA 180

Query: 181 DLILPVCNVFDILWSTRNFCVSGTGVFDVLFSVLVELGLLEEANECFSKMRKFRTLPKAR 240
           D     C+VFD+LWSTRN CV G GVFD LFSVL++LG+LEEA +CFSKM++FR  PK R
Sbjct: 181 D-----CDVFDVLWSTRNVCVPGFGVFDALFSVLIDLGMLEEAIQCFSKMKRFRVFPKTR 239

Query: 241 SCNFLLHRLSK 249
           SCN LLHR +K
Sbjct: 241 SCNGLLHRFAK 239

[Close]

BLAST of Carg17704 vs. TAIR10
Match: AT5G59900.1 (Pentatricopeptide repeat (PPR) superfamily protein)

HSP 1 Score: 85.1 bits (209), Expect = 2.0e-16
Identity = 52/162 (32.10%), Postives = 88/162 (54.32%), Query Frame = 0


Query: 104 LFDSALAPIWVSKILVELKEDPKLALKFFKWAGTHIGFRHTTESYCIIVHMLFRARMYTN 163
           L    L  + V +IL+   +DPKL L+FF + G H GF H+T S+CI++H L +A ++  
Sbjct: 63  LVSRRLKTVHVEEILIGTIDDPKLGLRFFNFLGLHRGFDHSTASFCILIHALVKANLFWP 122

Query: 164 AHDIMKEMVLKSRTDLILPVCNVFDILWSTRNFC-VSGTGVFDVLFSVLVELGLLEEANE 223
           A  +++ ++L++     L   +VF++L+S    C +S +  FD+L    V    + +   
Sbjct: 123 ASSLLQTLLLRA-----LKPSDVFNVLFSCYEKCKLSSSSSFDLLIQHYVRSRRVLDGVL 182

Query: 224 CFSKM-RKFRTLPKARSCNFLLHRLSKSGNGQLVRKFFHDMI 264
            F  M  K   LP+ R+ + LLH L K  +  L  + F+DM+
Sbjct: 183 VFKMMITKVSLLPEVRTLSALLHGLVKFRHFGLAMELFNDMV 219

[Close]

BLAST of Carg17704 vs. TAIR10
Match: AT5G55840.1 (Pentatricopeptide repeat (PPR) superfamily protein)

HSP 1 Score: 79.3 bits (194), Expect = 1.1e-14
Identity = 49/140 (35.00%), Postives = 68/140 (48.57%), Query Frame = 0


Query: 126 KLALKFFKWAGTHIGFR--HTTESYCIIVHMLFRARMYTNAHDIMKEMVLKSRTDLILPV 185
           KLALKF KW     G    H  +  CI  H+L RARMY  A  I+KE+ L S        
Sbjct: 91  KLALKFLKWVVKQPGLETDHIVQLVCITTHILVRARMYDPARHILKELSLMSGKSSF--- 150

Query: 186 CNVFDILWSTRNFCVSGTGVFDVLFSVLVELGLLEEANECFSKMRKFRTLPKARSCNFLL 245
             VF  L +T   C S   V+D+L  V +  G+++++ E F  M  +   P   +CN +L
Sbjct: 151 --VFGALMTTYRLCNSNPSVYDILIRVYLREGMIQDSLEIFRLMGLYGFNPSVYTCNAIL 210

Query: 246 HRLSKSGNGQLVRKFFHDMI 264
             + KSG    V  F  +M+
Sbjct: 211 GSVVKSGEDVSVWSFLKEML 225

[Close]

BLAST of Carg17704 vs. TAIR10
Match: AT1G05670.1 (Pentatricopeptide repeat (PPR-like) superfamily protein)

HSP 1 Score: 71.6 bits (174), Expect = 2.3e-12
Identity = 47/137 (34.31%), Postives = 67/137 (48.91%), Query Frame = 0


Query: 112 IWVSKILVELKEDPKLALKFFKWAGTHIGFRHTTESYCIIVHMLFRARMYTNAHDIMKEM 171
           IWV   L+++K D +L L FF WA +        ES CI++H+   ++    A  ++   
Sbjct: 91  IWV---LMKIKCDYRLVLDFFDWARSRRD--SNLESLCIVIHLAVASKDLKVAQSLISSF 150

Query: 172 VLKSRTDLILPVCNVFDILWSTRNFCVSGTGVFDVLFSVLVELGLLEEANECFSKMRKFR 231
             + + ++       FD+L  T     S   VFDV F VLV+ GLL EA   F KM  + 
Sbjct: 151 WERPKLNVTDSFVQFFDLLVYTYKDWGSDPRVFDVFFQVLVDFGLLREARRVFEKMLNYG 210

Query: 232 TLPKARSCNFLLHRLSK 249
            +    SCN  L RLSK
Sbjct: 211 LVLSVDSCNVYLTRLSK 222

[Close]

BLAST of Carg17704 vs. TAIR10
Match: AT1G19290.1 (Pentatricopeptide repeat (PPR) superfamily protein)

HSP 1 Score: 62.0 bits (149), Expect = 1.9e-09
Identity = 42/135 (31.11%), Postives = 66/135 (48.89%), Query Frame = 0


Query: 114 VSKILVELKEDPKLALKFFKWAGTHIGFRHTTESYCIIVHMLFRARMYTNAHDIMKEMVL 173
           ++ IL  L+ +P+  L+ F  A     FR   ++YC +VH+L RAR Y      + E+V 
Sbjct: 73  LNSILRRLRLNPEACLEIFNLASKQQKFRPDYKAYCKMVHILSRARNYQQTKSYLCELVA 132

Query: 174 KSRTDLIL--PVCNVFDILWSTRNFCVSGTGVFDVLFSVLVELGLLEEANECFSKMRKFR 233
            + +  ++   +  VF      + F  S T VFD++  V  E GL++ A   F  M  + 
Sbjct: 133 LNHSGFVVWGELVRVF------KEFSFSPT-VFDMILKVYAEKGLVKNALHVFDNMGNYG 192

Query: 234 TLPKARSCNFLLHRL 247
            +P   SCN LL  L
Sbjct: 193 RIPSLLSCNSLLSNL 200

[Close]

BLAST of Carg17704 vs. Swiss-Prot
Match: sp|P0C894|PP143_ARATH (Putative pentatricopeptide repeat-containing protein At2g02150 OS=Arabidopsis thaliana OX=3702 GN=At2g02150 PE=3 SV=1)

HSP 1 Score: 257.7 bits (657), Expect = 4.1e-67
Identity = 136/251 (54.18%), Postives = 169/251 (67.33%), Query Frame = 0


Query: 1   MLLFFRSLFHVSRRASYRVISLSLNSSH---PGCLSFNVFNGPSSLTSMNGYYISCPFFW 60
           M    R+  HV+RR    V   S + S    P C         SS +     +ISCPF W
Sbjct: 1   MFCSLRNFLHVNRRFPRHVSPSSSSLSQIQSPLCFPL------SSPSPSQSSFISCPFVW 60

Query: 61  FTSFLCIFRLPFVSYSITNDSFELLDIGSLRKIIQQDLWNDPKIVVLFDSALAPIWVSKI 120
           FTSFLCI R PFV+ S T+   E  D   +RK++  DLW+DP +  LFD  LAPIWV ++
Sbjct: 61  FTSFLCIIRYPFVTKSGTSTYSEDFDRDWIRKVVHNDLWDDPGLEKLFDLTLAPIWVPRV 120

Query: 121 LVELKEDPKLALKFFKWAGTHIGFRHTTESYCIIVHMLFRARMYTNAHDIMKEMVLKSRT 180
           LVELKEDPKLA KFFKW+ T  GF+H+ ESYCI+ H+LF ARMY +A+ ++KEMVL S+ 
Sbjct: 121 LVELKEDPKLAFKFFKWSMTRNGFKHSVESYCIVAHILFCARMYYDANSVLKEMVL-SKA 180

Query: 181 DLILPVCNVFDILWSTRNFCVSGTGVFDVLFSVLVELGLLEEANECFSKMRKFRTLPKAR 240
           D     C+VFD+LWSTRN CV G GVFD LFSVL++LG+LEEA +CFSKM++FR  PK R
Sbjct: 181 D-----CDVFDVLWSTRNVCVPGFGVFDALFSVLIDLGMLEEAIQCFSKMKRFRVFPKTR 239

Query: 241 SCNFLLHRLSK 249
           SCN LLHR +K
Sbjct: 241 SCNGLLHRFAK 239

[Close]

BLAST of Carg17704 vs. Swiss-Prot
Match: sp|Q9FJE6|PP437_ARATH (Putative pentatricopeptide repeat-containing protein At5g59900 OS=Arabidopsis thaliana OX=3702 GN=At5g59900 PE=3 SV=1)

HSP 1 Score: 85.1 bits (209), Expect = 3.7e-15
Identity = 52/162 (32.10%), Postives = 88/162 (54.32%), Query Frame = 0


Query: 104 LFDSALAPIWVSKILVELKEDPKLALKFFKWAGTHIGFRHTTESYCIIVHMLFRARMYTN 163
           L    L  + V +IL+   +DPKL L+FF + G H GF H+T S+CI++H L +A ++  
Sbjct: 63  LVSRRLKTVHVEEILIGTIDDPKLGLRFFNFLGLHRGFDHSTASFCILIHALVKANLFWP 122

Query: 164 AHDIMKEMVLKSRTDLILPVCNVFDILWSTRNFC-VSGTGVFDVLFSVLVELGLLEEANE 223
           A  +++ ++L++     L   +VF++L+S    C +S +  FD+L    V    + +   
Sbjct: 123 ASSLLQTLLLRA-----LKPSDVFNVLFSCYEKCKLSSSSSFDLLIQHYVRSRRVLDGVL 182

Query: 224 CFSKM-RKFRTLPKARSCNFLLHRLSKSGNGQLVRKFFHDMI 264
            F  M  K   LP+ R+ + LLH L K  +  L  + F+DM+
Sbjct: 183 VFKMMITKVSLLPEVRTLSALLHGLVKFRHFGLAMELFNDMV 219

[Close]

BLAST of Carg17704 vs. Swiss-Prot
Match: sp|Q9LVQ5|PP432_ARATH (Pentatricopeptide repeat-containing protein At5g55840 OS=Arabidopsis thaliana OX=3702 GN=At5g55840 PE=3 SV=2)

HSP 1 Score: 79.3 bits (194), Expect = 2.0e-13
Identity = 49/140 (35.00%), Postives = 68/140 (48.57%), Query Frame = 0


Query: 126 KLALKFFKWAGTHIGFR--HTTESYCIIVHMLFRARMYTNAHDIMKEMVLKSRTDLILPV 185
           KLALKF KW     G    H  +  CI  H+L RARMY  A  I+KE+ L S        
Sbjct: 51  KLALKFLKWVVKQPGLETDHIVQLVCITTHILVRARMYDPARHILKELSLMSGKSSF--- 110

Query: 186 CNVFDILWSTRNFCVSGTGVFDVLFSVLVELGLLEEANECFSKMRKFRTLPKARSCNFLL 245
             VF  L +T   C S   V+D+L  V +  G+++++ E F  M  +   P   +CN +L
Sbjct: 111 --VFGALMTTYRLCNSNPSVYDILIRVYLREGMIQDSLEIFRLMGLYGFNPSVYTCNAIL 170

Query: 246 HRLSKSGNGQLVRKFFHDMI 264
             + KSG    V  F  +M+
Sbjct: 171 GSVVKSGEDVSVWSFLKEML 185

[Close]

BLAST of Carg17704 vs. Swiss-Prot
Match: sp|Q0WVK7|PPR12_ARATH (Pentatricopeptide repeat-containing protein At1g05670, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=At1g05670 PE=2 SV=1)

HSP 1 Score: 71.6 bits (174), Expect = 4.2e-11
Identity = 47/137 (34.31%), Postives = 67/137 (48.91%), Query Frame = 0


Query: 112 IWVSKILVELKEDPKLALKFFKWAGTHIGFRHTTESYCIIVHMLFRARMYTNAHDIMKEM 171
           IWV   L+++K D +L L FF WA +        ES CI++H+   ++    A  ++   
Sbjct: 91  IWV---LMKIKCDYRLVLDFFDWARSRRD--SNLESLCIVIHLAVASKDLKVAQSLISSF 150

Query: 172 VLKSRTDLILPVCNVFDILWSTRNFCVSGTGVFDVLFSVLVELGLLEEANECFSKMRKFR 231
             + + ++       FD+L  T     S   VFDV F VLV+ GLL EA   F KM  + 
Sbjct: 151 WERPKLNVTDSFVQFFDLLVYTYKDWGSDPRVFDVFFQVLVDFGLLREARRVFEKMLNYG 210

Query: 232 TLPKARSCNFLLHRLSK 249
            +    SCN  L RLSK
Sbjct: 211 LVLSVDSCNVYLTRLSK 222

[Close]

BLAST of Carg17704 vs. Swiss-Prot
Match: sp|Q9LN69|PPR50_ARATH (Putative pentatricopeptide repeat-containing protein At1g19290 OS=Arabidopsis thaliana OX=3702 GN=At1g19290 PE=3 SV=2)

HSP 1 Score: 62.0 bits (149), Expect = 3.3e-08
Identity = 42/135 (31.11%), Postives = 66/135 (48.89%), Query Frame = 0


Query: 114 VSKILVELKEDPKLALKFFKWAGTHIGFRHTTESYCIIVHMLFRARMYTNAHDIMKEMVL 173
           ++ IL  L+ +P+  L+ F  A     FR   ++YC +VH+L RAR Y      + E+V 
Sbjct: 73  LNSILRRLRLNPEACLEIFNLASKQQKFRPDYKAYCKMVHILSRARNYQQTKSYLCELVA 132

Query: 174 KSRTDLIL--PVCNVFDILWSTRNFCVSGTGVFDVLFSVLVELGLLEEANECFSKMRKFR 233
            + +  ++   +  VF      + F  S T VFD++  V  E GL++ A   F  M  + 
Sbjct: 133 LNHSGFVVWGELVRVF------KEFSFSPT-VFDMILKVYAEKGLVKNALHVFDNMGNYG 192

Query: 234 TLPKARSCNFLLHRL 247
            +P   SCN LL  L
Sbjct: 193 RIPSLLSCNSLLSNL 200

[Close]

BLAST of Carg17704 vs. TrEMBL
Match: tr|A0A1S3CT40|A0A1S3CT40_CUCME (putative pentatricopeptide repeat-containing protein At2g02150 OS=Cucumis melo OX=3656 GN=LOC103503999 PE=4 SV=1)

HSP 1 Score: 454.5 bits (1168), Expect = 4.7e-124
Identity = 222/264 (84.09%), Postives = 243/264 (92.05%), Query Frame = 0


Query: 1   MLLFFRSLFHVSRRASYRVISLSLNSSHPGCLSFNVFNGPSSLTSMNGYYISCPFFWFTS 60
           MLLFFR+LFHVSRRAS+RVISLS NSSHP  LSFNVFN  SSLTS+N Y IS PFFWFTS
Sbjct: 20  MLLFFRTLFHVSRRASFRVISLSSNSSHPDSLSFNVFNPSSSLTSINAYRISRPFFWFTS 79

Query: 61  FLCIFRLPFVSYSITNDSFELLDIGSLRKIIQQDLWNDPKIVVLFDSALAPIWVSKILVE 120
           FLCIFRLPFVSYS  N+S E LDIGSLRKIIQQDLWNDPKIVVLFDSALAPIWVS+ILV 
Sbjct: 80  FLCIFRLPFVSYSNANNSIEFLDIGSLRKIIQQDLWNDPKIVVLFDSALAPIWVSRILVG 139

Query: 121 LKEDPKLALKFFKWAGTHIGFRHTTESYCIIVHMLFRARMYTNAHDIMKEMVLKSRTDLI 180
           LKEDPKLALKFFKWAG+ +GFRHTTESYCIIVH++FRARMYT+AHD +KE+++K+R D+ 
Sbjct: 140 LKEDPKLALKFFKWAGSQVGFRHTTESYCIIVHLVFRARMYTDAHDTVKEVIMKNRIDMG 199

Query: 181 LPVCNVFDILWSTRNFCVSGTGVFDVLFSVLVELGLLEEANECFSKMRKFRTLPKARSCN 240
            PVCN+FD+LWSTRN CVSG+GVFDVLFSV VELGLLEEANECFS+MR FRTLPKARSCN
Sbjct: 200 FPVCNIFDMLWSTRNICVSGSGVFDVLFSVFVELGLLEEANECFSRMRNFRTLPKARSCN 259

Query: 241 FLLHRLSKSGNGQLVRKFFHDMIG 265
           FLLHRLSKSGNGQLVRKFF+DMIG
Sbjct: 260 FLLHRLSKSGNGQLVRKFFNDMIG 283

[Close]

BLAST of Carg17704 vs. TrEMBL
Match: tr|A0A0A0KPW1|A0A0A0KPW1_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G114630 PE=4 SV=1)

HSP 1 Score: 424.1 bits (1089), Expect = 6.8e-115
Identity = 207/249 (83.13%), Postives = 228/249 (91.57%), Query Frame = 0


Query: 1   MLLFFRSLFHVSRRASYRVISLSLNSSHPGCLSFNVFNGPSSLTSMNGYYISCPFFWFTS 60
           MLLFFR+LFHVSRRAS+RVISLS NSSHP  LSFNVFN  SSLTS+N Y IS PFFWFTS
Sbjct: 19  MLLFFRTLFHVSRRASFRVISLSSNSSHPDSLSFNVFNPSSSLTSINAYCISRPFFWFTS 78

Query: 61  FLCIFRLPFVSYSITNDSFELLDIGSLRKIIQQDLWNDPKIVVLFDSALAPIWVSKILVE 120
           FLCIFRLPFVSYS  N+SF+ LDIGSLRKIIQQDLWNDPKIVVLFDSALAPIWVSKIL+ 
Sbjct: 79  FLCIFRLPFVSYSNANNSFQYLDIGSLRKIIQQDLWNDPKIVVLFDSALAPIWVSKILLG 138

Query: 121 LKEDPKLALKFFKWAGTHIGFRHTTESYCIIVHMLFRARMYTNAHDIMKEMVLKSRTDLI 180
           L+EDPKLALKFFKWAG+ +GFRHTTESYCIIVH++FRARMYT+AHD +KE+++ SR D+ 
Sbjct: 139 LREDPKLALKFFKWAGSQVGFRHTTESYCIIVHLVFRARMYTDAHDTVKEVIMNSRMDMG 198

Query: 181 LPVCNVFDILWSTRNFCVSGTGVFDVLFSVLVELGLLEEANECFSKMRKFRTLPKARSCN 240
            PVCN+FD+LWSTRN CVSG+GVFDVLFSV VELGLLEEANECFS+MR FRTLPKARSCN
Sbjct: 199 FPVCNIFDMLWSTRNICVSGSGVFDVLFSVFVELGLLEEANECFSRMRNFRTLPKARSCN 258

Query: 241 FLLHRLSKS 250
           FLLHRLSKS
Sbjct: 259 FLLHRLSKS 267

[Close]

BLAST of Carg17704 vs. TrEMBL
Match: tr|A0A2I4GC13|A0A2I4GC13_9ROSI (putative pentatricopeptide repeat-containing protein At2g02150 OS=Juglans regia OX=51240 GN=LOC109006569 PE=4 SV=1)

HSP 1 Score: 287.3 bits (734), Expect = 9.9e-74
Identity = 155/268 (57.84%), Postives = 190/268 (70.90%), Query Frame = 0


Query: 1   MLLFFRSLFHVSRRASYRVISLSLNSSHPGCLSFNVFNGPSSLTSMNGYYISCPFFWFTS 60
           M L+ R LFHV RRAS+RV  LSLN+ +P    FN  N  S   S +G ++ CP  W TS
Sbjct: 1   MGLYLRRLFHVGRRASHRVSPLSLNTLNPINPFFNTINVSS---SSHGSFLDCPLIWLTS 60

Query: 61  FLCIFRLPFVSYSITNDSFELL---DIGSLRKIIQQDLWNDPKIVVLFDSALAPIWVSKI 120
           F  I R PFVS S  N  F+ +    I ++ +IIQQ+ W+D +I+ L DSALAPIW+S+ 
Sbjct: 61  FPFIIRYPFVSKSSPNRIFDDISKESICNIIQIIQQEQWDDNRIICLLDSALAPIWMSRA 120

Query: 121 LVELKEDPKLALKFFKWAGTHIGFRHTTESYCIIVHMLFRARMYTNAHDIMKEMVLKSRT 180
           LVELK DP+LAL+FF WAGT IGF HTTESYCI++H+LF ARMY +A+ I++E+VL    
Sbjct: 121 LVELKGDPRLALQFFNWAGTRIGFCHTTESYCILIHILFYARMYFDANRIIRELVL---L 180

Query: 181 DLILPVCNVFDILWSTRNFCVSGTGVFDVLFSVLVELGLLEEANECFSKMRKFRTLPKAR 240
             +LP C+VFD+LWSTR  CV G GVFD LF VL  LG+LEEA ECF +M K R LPK R
Sbjct: 181 RWVLPGCHVFDVLWSTRGVCVPGFGVFDALFRVLTGLGMLEEAIECFLRMEKDRVLPKPR 240

Query: 241 SCNFLLHRLSKSGNGQLVRKFFHDMIGA 266
           SCN LLHRLSKSG  +L RKFF DM+GA
Sbjct: 241 SCNELLHRLSKSGKRELSRKFFKDMVGA 262

[Close]

BLAST of Carg17704 vs. TrEMBL
Match: tr|A0A251R7L2|A0A251R7L2_PRUPE (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_1G342600 PE=4 SV=1)

HSP 1 Score: 287.3 bits (734), Expect = 9.9e-74
Identity = 157/263 (59.70%), Postives = 187/263 (71.10%), Query Frame = 0


Query: 1   MLLFFRSLFHVSRRA-SYRVISL-SLNSSHPGCLSFNVFNGPSSLTSMNGYYISCPFFWF 60
           ML+F R+LF +  RA S+RV  L S+      CL  NV     SL+S +   I+CP  WF
Sbjct: 40  MLIFLRNLFQMGCRASSHRVSPLSSIPQYSSNCLFINV--SSLSLSSSHSSLIACPLVWF 99

Query: 61  TSFLCIFRLPFVSYSITNDSFELLDIGSLRKIIQQDLWNDPKIVVLFDSALAPIWVSKIL 120
           TSFL I R PFV+ S  N   + L+  SLR IIQ D W+DP+IV LF SALAPIWVSK L
Sbjct: 100 TSFLFITRFPFVTKSNPNSFPDNLNTESLRIIIQHDYWDDPRIVNLFGSALAPIWVSKFL 159

Query: 121 VELKEDPKLALKFFKWAGTHIGFRHTTESYCIIVHMLFRARMYTNAHDIMKEMVLKSRTD 180
           VEL+ DPKLALK F+W+ T IGF HTTESYCI+VH+LF ARMY +AH+I+KE+V   R  
Sbjct: 160 VELRGDPKLALKLFRWSKTRIGFCHTTESYCILVHILFYARMYFDAHEILKELVSLRR-- 219

Query: 181 LILPVCNVFDILWSTRNFCVSGTGVFDVLFSVLVELGLLEEANECFSKMRKFRTLPKARS 240
            +LP C+VFD+LWSTRN C  G GVFD LFSVLVE G+LE+A+ECF +M+KFR LPK RS
Sbjct: 220 -VLPGCDVFDVLWSTRNVCRLGFGVFDALFSVLVEFGMLEKASECFLRMKKFRVLPKVRS 279

Query: 241 CNFLLHRLSKSGNGQLVRKFFHD 262
           CN LL RLSK G G   RKFF D
Sbjct: 280 CNALLQRLSKPGKGNFSRKFFKD 297

[Close]

BLAST of Carg17704 vs. TrEMBL
Match: tr|A0A2I4GDJ2|A0A2I4GDJ2_9ROSI (putative pentatricopeptide repeat-containing protein At2g02150 OS=Juglans regia OX=51240 GN=LOC109006962 PE=4 SV=1)

HSP 1 Score: 281.2 bits (718), Expect = 7.1e-72
Identity = 148/257 (57.59%), Postives = 184/257 (71.60%), Query Frame = 0


Query: 1   MLLFFRSLFHVSRRASYRVISLSLNSSHPGCLSFNVFNGPSSLTSMNGYYISCPFFWFTS 60
           M L+ R LFHV RRAS RV  LS N+ +    S N F    +++S +  ++ CP  WFTS
Sbjct: 18  MRLYLRGLFHVGRRASCRVSPLSPNTLN----SINPFFNTITVSSSHVSFLDCPLIWFTS 77

Query: 61  FLCIFRLPFVSYSITN---DSFELLDIGSLRKIIQQDLWNDPKIVVLFDSALAPIWVSKI 120
           FL I R PFVS S  N   D      I ++ +IIQQ+ W D +I+ LFDSALAPIW+S++
Sbjct: 78  FLYIIRYPFVSKSNPNSICDDISKESICNIIQIIQQEQWEDNRIIGLFDSALAPIWMSRV 137

Query: 121 LVELKEDPKLALKFFKWAGTHIGFRHTTESYCIIVHMLFRARMYTNAHDIMKEMVLKSRT 180
           LVELK DPKLAL+FFKW G+ IGF HTTESYCI++H+LF ARMY + H I++E+VL    
Sbjct: 138 LVELKGDPKLALRFFKWTGSRIGFCHTTESYCILIHILFYARMYFDTHRIIRELVL---L 197

Query: 181 DLILPVCNVFDILWSTRNFCVSGTGVFDVLFSVLVELGLLEEANECFSKMRKFRTLPKAR 240
             +LP C+VFD+LWSTR  CV G GVFD LFSV+ ELG+LEEA+ECF +M K+R LPKAR
Sbjct: 198 KWVLPGCHVFDVLWSTRGVCVPGFGVFDALFSVVTELGMLEEASECFLRMEKYRVLPKAR 257

Query: 241 SCNFLLHRLSKSGNGQL 255
           SCN LLHRLSKSG  +L
Sbjct: 258 SCNELLHRLSKSGKREL 267

The following BLAST results are available for this feature:

BLAST of Carg17704 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022959718.1	7.5e-150	100.00	putative pentatricopeptide repeat-containing protein At2g02150 isoform X3 [Cucur...	[more]
XP_022959725.1	7.5e-150	100.00	putative pentatricopeptide repeat-containing protein At2g02150 isoform X4 [Cucur...	[more]
XP_022959709.1	7.5e-150	100.00	putative pentatricopeptide repeat-containing protein At2g02150 isoform X2 [Cucur...	[more]
XP_022959692.1	7.5e-150	100.00	putative pentatricopeptide repeat-containing protein At2g02150 isoform X1 [Cucur...	[more]
XP_022990898.1	6.6e-146	97.74	putative pentatricopeptide repeat-containing protein At2g02150 isoform X3 [Cucur...	[more]

BLAST of Carg17704 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G02150.1	2.3e-68	54.18	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]
AT5G59900.1	2.0e-16	32.10	Pentatricopeptide repeat (PPR) superfamily protein	[more]
AT5G55840.1	1.1e-14	35.00	Pentatricopeptide repeat (PPR) superfamily protein	[more]
AT1G05670.1	2.3e-12	34.31	Pentatricopeptide repeat (PPR-like) superfamily protein	[more]
AT1G19290.1	1.9e-09	31.11	Pentatricopeptide repeat (PPR) superfamily protein	[more]

BLAST of Carg17704 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|P0C894\|PP143_ARATH	4.1e-67	54.18	Putative pentatricopeptide repeat-containing protein At2g02150 OS=Arabidopsis th...	[more]
sp\|Q9FJE6\|PP437_ARATH	3.7e-15	32.10	Putative pentatricopeptide repeat-containing protein At5g59900 OS=Arabidopsis th...	[more]
sp\|Q9LVQ5\|PP432_ARATH	2.0e-13	35.00	Pentatricopeptide repeat-containing protein At5g55840 OS=Arabidopsis thaliana OX...	[more]
sp\|Q0WVK7\|PPR12_ARATH	4.2e-11	34.31	Pentatricopeptide repeat-containing protein At1g05670, mitochondrial OS=Arabidop...	[more]
sp\|Q9LN69\|PPR50_ARATH	3.3e-08	31.11	Putative pentatricopeptide repeat-containing protein At1g19290 OS=Arabidopsis th...	[more]

BLAST of Carg17704 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3CT40\|A0A1S3CT40_CUCME	4.7e-124	84.09	putative pentatricopeptide repeat-containing protein At2g02150 OS=Cucumis melo O...	[more]
tr\|A0A0A0KPW1\|A0A0A0KPW1_CUCSA	6.8e-115	83.13	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G114630 PE=4 SV=1	[more]
tr\|A0A2I4GC13\|A0A2I4GC13_9ROSI	9.9e-74	57.84	putative pentatricopeptide repeat-containing protein At2g02150 OS=Juglans regia ...	[more]
tr\|A0A251R7L2\|A0A251R7L2_PRUPE	9.9e-74	59.70	Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_1G342600 PE=4 SV=1	[more]
tr\|A0A2I4GDJ2\|A0A2I4GDJ2_9ROSI	7.1e-72	57.59	putative pentatricopeptide repeat-containing protein At2g02150 OS=Juglans regia ...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0005515	protein binding

Vocabulary: **INTERPRO**
Term	Definition
IPR002885	Pentatricopeptide_repeat
IPR011990	TPR-like_helical_dom_sf

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0005515	protein binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg17704-RA	Carg17704-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR011990	Tetratricopeptide-like helical domain superfamily	GENE3D	G3DSA:1.25.40.10		coord: 425..540 e-value: 9.5E-35 score: 122.6
IPR011990	Tetratricopeptide-like helical domain superfamily	GENE3D	G3DSA:1.25.40.10		coord: 336..424 e-value: 2.4E-32 score: 113.7 coord: 687..766 e-value: 5.7E-16 score: 60.4 coord: 116..251 e-value: 1.6E-14 score: 55.6
IPR011990	Tetratricopeptide-like helical domain superfamily	GENE3D	G3DSA:1.25.40.10		coord: 262..335 e-value: 2.4E-23 score: 84.6
IPR011990	Tetratricopeptide-like helical domain superfamily	GENE3D	G3DSA:1.25.40.10		coord: 541..686 e-value: 1.2E-43 score: 151.7
IPR002885	Pentatricopeptide repeat	PFAM	PF13812	PPR_3	coord: 483..523 e-value: 8.5E-7 score: 28.9
IPR002885	Pentatricopeptide repeat	TIGRFAM	TIGR00756	TIGR00756	coord: 377..411 e-value: 1.4E-9 score: 35.6 coord: 518..550 e-value: 0.0011 score: 17.0 coord: 447..480 e-value: 3.5E-10 score: 37.4 coord: 552..585 e-value: 3.9E-8 score: 31.0 coord: 412..445 e-value: 1.6E-5 score: 22.8 coord: 307..341 e-value: 5.8E-11 score: 39.9 coord: 238..270 e-value: 0.002 score: 16.2 coord: 693..726 e-value: 2.1E-8 score: 31.8 coord: 729..758 e-value: 0.0013 score: 16.8 coord: 342..376 e-value: 4.3E-8 score: 30.8 coord: 483..515 e-value: 2.5E-8 score: 31.6 coord: 623..655 e-value: 3.8E-9 score: 34.2 coord: 587..621 e-value: 1.2E-9 score: 35.8 coord: 272..306 e-value: 1.5E-10 score: 38.6
IPR002885	Pentatricopeptide repeat	PFAM	PF01535	PPR	coord: 238..267 e-value: 0.68 score: 10.2 coord: 731..757 e-value: 0.011 score: 15.9 coord: 205..230 e-value: 0.099 score: 12.8
IPR002885	Pentatricopeptide repeat	PFAM	PF13041	PPR_2	coord: 619..665 e-value: 1.4E-13 score: 50.6 coord: 339..388 e-value: 3.2E-20 score: 71.9 coord: 413..457 e-value: 4.0E-13 score: 49.2 coord: 550..598 e-value: 8.3E-16 score: 57.8 coord: 269..317 e-value: 1.5E-17 score: 63.4 coord: 690..726 e-value: 6.8E-8 score: 32.5
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 235..269 score: 8.714
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 410..444 score: 11.323
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 144..174 score: 6.697
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 340..374 score: 12.989
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 515..549 score: 10.348
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 270..304 score: 13.318
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 480..514 score: 12.211
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 620..654 score: 12.211
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 305..339 score: 13.614
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 445..479 score: 13.713
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 200..234 score: 7.892
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 375..409 score: 13.23
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 725..759 score: 9.635
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 655..689 score: 8.177
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 585..619 score: 12.047
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 550..584 score: 11.783
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 690..724 score: 12.781
None	No IPR available	PANTHER	PTHR24015	FAMILY NOT NAMED	coord: 78..748
None	No IPR available	PANTHER	PTHR24015:SF329	SUBFAMILY NOT NAMED	coord: 78..748
None	No IPR available	SUPERFAMILY	SSF81901	HCP-like	coord: 272..372 coord: 409..519
None	No IPR available	SUPERFAMILY	SSF81901	HCP-like	coord: 654..747 coord: 482..582

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg17704	CmaCh15G008640	Cucurbita maxima (Rimu)	carcmaB0664
Carg17704	CmaCh04G021650	Cucurbita maxima (Rimu)	carcmaB0665
Carg17704	CmoCh15G009000	Cucurbita moschata (Rifu)	carcmoB0647
Carg17704	CmoCh04G022650	Cucurbita moschata (Rifu)	carcmoB0648
Carg17704	Cp4.1LG13g06320	Cucurbita pepo (Zucchini)	carcpeB0669
Carg17704	Cp4.1LG01g18870	Cucurbita pepo (Zucchini)	carcpeB0670

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Carg17704	Carg01341	Silver-seed gourd	carcarB469

The following block(s) are covering this gene:


Gene	Organism	Block
Carg17704	Wax gourd	carwgoB0579
Carg17704	Cucumber (Gy14) v2	carcgybB0486
Carg17704	Wild cucumber (PI 183967)	carcpiB0516
Carg17704	Cucumber (Chinese Long) v2	carcuB0511
Carg17704	Cucumber (Chinese Long) v3	carcucB0515
Carg17704	Bottle gourd (USVL1VR-Ls)	carlsiB433
Carg17704	Melon (DHL92) v3.5.1	carmeB0483
Carg17704	Melon (DHL92) v3.6.1	carmedB0487
Carg17704	Watermelon (Charleston Gray)	carwcgB0462
Carg17704	Watermelon (97103) v1	carwmB0472
Carg17704	Watermelon (97103) v2	carwmbB0501