Carg01341 (gene) Silver-seed gourd

Overview
NameCarg01341
Typegene
OrganismCucurbita argyrosperma (Silver-seed gourd)
DescriptionPentatricopeptide repeat-containing protein
LocationCucurbita_argyrosperma_scaffold_004 : 352033 .. 354342 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCTACTCTTCTTTCGCGGTCTTTTTCAAGTTAGTCGCAGAGCCTCTTACCGAGTAATCTCTCTGTCTTCAAATTCCTCGCATCCGGGTTGCCTTTCTTTCAATGCATTTAATGCCTCGTCATCCCTAACATCAATAAATGGCTGTTACATTTCTTGTCTTTGGTTCGCTAGCTTTCTTTGTATATTTCGGCTCCCTTTTGTTAGTTACTCGAATACAAATAGTTCATTTGAATCATTAGACATTGGTTCCCTTCGTAAAATCATACAACAGGACCTCTGGAACGATCCTAAGATTGTTATTTTATTTGATTCAGCACTCGCGCCCATTTGGGTCTCTAAGATTTTAGTTGAATTGAAAGAAGATCCAAAGTTAGCTCTTAAGTTCTTCAAATGGGCAGGAAGCCAGATTGGTTTCTGCCATACCACCGAGTCTTACTGCATTATAGCTCACATGCTGTTTTGTGCGAGAATGTATATGAATGCCCATGATATTATTAAAGAAGTGATTTTGAAGTGTCGTATCGACATGACTTTTCCTGTTTGTAATATATTTGATATGTTATGGTCGACTAGGAATGTTTGTGTGTCAGGAACAGGAGTCTTTGACATTTTATTTAGTGTTCTGGTAGAGTTGGGTCTGCTTGAGGAAGCTAATGAATGTTTCTCGAGAATGAGGAAGTTTAGGACTCTTCCCAAAGCACGTTCATGCAATTTTCTTTTGCATAGATTATCAAAGTCGGGTAATGGACAGTTGGTGAAGAAGTTTTTCAATGATATGATTGGGGCTGGGATCGCACCTTCTGTTTTTACTTACAATGTAATGATAGATTACTTGTGCAAAGAAGGGGATTTGGAAAACGCTAGACGTTTGTTTGTGCAAATGAGGCAAATGGGCTTTTCTCCAGATGTTGTCACCTATAATTCCTTGATTGATGGCTATGGCAAGGTTGGTTTACTAGAAGAATCTGTGTATTTATTTGAAGAAATGAAGGATATCGGTTGTGTTCCTGACGTAATTACTTATAATGCGTTGATCAATTGTTTTTGTAAGTTTGAGAAGATGCCTCGAGCTTTTGAGTATCTCTCTGAGATGAAGAACAATGGGTTAAAACCAAATGTTGTAACATATAGCACATTGATTGATGCTTTTTGCAAGGAGGGAATGATGCAATATGCCATCAAACTTTTTGTTGATATGAGAAGAGTTGGCCTGCTACCTAATGAATTCACCTACACTTCTCTGATTGATGCCAATTGTAAGGCAGGTAACTTAACAGAAGCATGGAAGTTGTCCAACGATATGTTGCAGGCAGGATTTAATTTAAATGTAGTAACCTATACAGCTCTAATGGATGGGCTTTGTGAAGATGGAAGAATGATGGAAGCGGAAGAAGTGTTTAGGGCAATGCTGAAAGATGGACTATCGCCCAACCAGCAGGTTTACACTGCTTTGGTTCATGGCTATATTAAGGCAGAGAGAATGGAGGATGCAATGGAAACATTGAAGCAAATGACAGAATGTAACATCAAACCGGATTTAATACTCTATGGCACCATTATTTGGGGTCTCTGTAGTCAAAACAAACTTGAAGAATCTAAACTTATTATTAAAGAAATGAAAAGTCAGGGTATTAGTGCAAATCCTGTTATATACACAACAATTATGGATGCTTATTTTAAGGCTGGAAAAGGCTCAGATGCAATAAATCTTCTTCATAAGATGCAGGATATGGGTGTTGAGGCTACTGTTGTAACCTACTGTGTACTAATTGATGGTTTGTGCAAAACAGGTATGGTCGAACTGGCAGTTGATTATTTTGGTAGAATGTCTGATCTTGGTTTACAACCTAATGTTGCAGTTTATACGGCCCTTATTGATGGTCTTTGTAAAACTAATTGCATTGAGTCTGCCAAAAAGTTGTTTGATGAAATGCAATATAGGGGTATGACCCCAGATAAAACAGCTTTTACTGCTCTTATTGATGGCAACTTGAAGCTTGGAAATCTTCAGGAAGCTTTGGATTTGATTAGCAGAATGACAGACTTAGCTATTGAGTTTGATTTACATGCTTATACCTCCATGGTTTCGGGATTTTCTCAATGTGGTGACCTGCATCAAGCGAGGAAGTTTTTTAATGAAATGATTGAGAAAGGCATACTTCCCGAGGAGATTTTATGTACATGTCTACTGAGAGAGTATTACAAGCTTGGACAGTTGGACGAAGCCATTGAATTGAAGAATGAAATGAGAAGGAGGGGTTTAATTACTGAAAACTGTAGCCTTGGAGTTCCCAGTCTTAGAACTTGA

mRNA sequence

ATGCTACTCTTCTTTCGCGGTCTTTTTCAAGTTAGTCGCAGAGCCTCTTACCGAGACCTCTGGAACGATCCTAAGATTGTTATTTTATTTGATTCAGCACTCGCGCCCATTTGGGTCTCTAAGATTTTAGTTGAATTGAAAGAAGATCCAAAGTTAGCTCTTAAGTTCTTCAAATGGGCAGGAAGCCAGATTGGTTTCTGCCATACCACCGAGTCTTACTGCATTATAGCTCACATGCTGTTTTGTGCGAGAATGTATATGAATGCCCATGATATTATTAAAGAAGTGATTTTGAAGTGTCGTATCGACATGACTTTTCCTGTTTGTAATATATTTGATATGTTATGGTCGACTAGGAATGTTTGTGTGTCAGGAACAGGAGTCTTTGACATTTTATTTAGTGTTCTGGTAGAGTTGGGTCTGCTTGAGGAAGCTAATGAATGTTTCTCGAGAATGAGGAAGTTTAGGACTCTTCCCAAAGCACGTTCATGCAATTTTCTTTTGCATAGATTATCAAAGTCGGGTAATGGACAGTTGGTGAAGAAGTTTTTCAATGATATGATTGGGGCTGGGATCGCACCTTCTGTTTTTACTTACAATGTAATGATAGATTACTTGTGCAAAGAAGGGGATTTGGAAAACGCTAGACGTTTGTTTGTGCAAATGAGGCAAATGGGCTTTTCTCCAGATGTTGTCACCTATAATTCCTTGATTGATGGCTATGGCAAGGTTGGTTTACTAGAAGAATCTGTGTATTTATTTGAAGAAATGAAGGATATCGGTTGTGTTCCTGACGTAATTACTTATAATGCGTTGATCAATTGTTTTTGTAAGTTTGAGAAGATGCCTCGAGCTTTTGAGTATCTCTCTGAGATGAAGAACAATGGGTTAAAACCAAATGTTGTAACATATAGCACATTGATTGATGCTTTTTGCAAGGAGGGAATGATGCAATATGCCATCAAACTTTTTGTTGATATGAGAAGAGTTGGCCTGCTACCTAATGAATTCACCTACACTTCTCTGATTGATGCCAATTGTAAGGCAGGTAACTTAACAGAAGCATGGAAGTTGTCCAACGATATGTTGCAGGCAGGATTTAATTTAAATGTAGTAACCTATACAGCTCTAATGGATGGGCTTTGTGAAGATGGAAGAATGATGGAAGCGGAAGAAGTGTTTAGGGCAATGCTGAAAGATGGACTATCGCCCAACCAGCAGGTTTACACTGCTTTGGTTCATGGCTATATTAAGGCAGAGAGAATGGAGGATGCAATGGAAACATTGAAGCAAATGACAGAATGTAACATCAAACCGGATTTAATACTCTATGGCACCATTATTTGGGGTCTCTGTAGTCAAAACAAACTTGAAGAATCTAAACTTATTATTAAAGAAATGAAAAGTCAGGGTATTAGTGCAAATCCTGTTATATACACAACAATTATGGATGCTTATTTTAAGGCTGGAAAAGGCTCAGATGCAATAAATCTTCTTCATAAGATGCAGGATATGGGTGTTGAGGCTACTGTTGTAACCTACTGTGTACTAATTGATGGTTTGTGCAAAACAGGTATGGTCGAACTGGCAGTTGATTATTTTGGTAGAATGTCTGATCTTGGTTTACAACCTAATGTTGCAGTTTATACGGCCCTTATTGATGGTCTTTGTAAAACTAATTGCATTGAGTCTGCCAAAAAGTTGTTTGATGAAATGCAATATAGGGGTATGACCCCAGATAAAACAGCTTTTACTGCTCTTATTGATGGCAACTTGAAGCTTGGAAATCTTCAGGAAGCTTTGGATTTGATTAGCAGAATGACAGACTTAGCTATTGAGTTTGATTTACATGCTTATACCTCCATGGTTTCGGGATTTTCTCAATGTGGTGACCTGCATCAAGCGAGGAAGTTTTTTAATGAAATGATTGAGAAAGGCATACTTCCCGAGGAGATTTTATGTACATGTCTACTGAGAGAGTATTACAAGCTTGGACAGTTGGACGAAGCCATTGAATTGAAGAATGAAATGAGAAGGAGGGGTTTAATTACTGAAAACTGTAGCCTTGGAGTTCCCAGTCTTAGAACTTGA

Coding sequence (CDS)

ATGCTACTCTTCTTTCGCGGTCTTTTTCAAGTTAGTCGCAGAGCCTCTTACCGAGACCTCTGGAACGATCCTAAGATTGTTATTTTATTTGATTCAGCACTCGCGCCCATTTGGGTCTCTAAGATTTTAGTTGAATTGAAAGAAGATCCAAAGTTAGCTCTTAAGTTCTTCAAATGGGCAGGAAGCCAGATTGGTTTCTGCCATACCACCGAGTCTTACTGCATTATAGCTCACATGCTGTTTTGTGCGAGAATGTATATGAATGCCCATGATATTATTAAAGAAGTGATTTTGAAGTGTCGTATCGACATGACTTTTCCTGTTTGTAATATATTTGATATGTTATGGTCGACTAGGAATGTTTGTGTGTCAGGAACAGGAGTCTTTGACATTTTATTTAGTGTTCTGGTAGAGTTGGGTCTGCTTGAGGAAGCTAATGAATGTTTCTCGAGAATGAGGAAGTTTAGGACTCTTCCCAAAGCACGTTCATGCAATTTTCTTTTGCATAGATTATCAAAGTCGGGTAATGGACAGTTGGTGAAGAAGTTTTTCAATGATATGATTGGGGCTGGGATCGCACCTTCTGTTTTTACTTACAATGTAATGATAGATTACTTGTGCAAAGAAGGGGATTTGGAAAACGCTAGACGTTTGTTTGTGCAAATGAGGCAAATGGGCTTTTCTCCAGATGTTGTCACCTATAATTCCTTGATTGATGGCTATGGCAAGGTTGGTTTACTAGAAGAATCTGTGTATTTATTTGAAGAAATGAAGGATATCGGTTGTGTTCCTGACGTAATTACTTATAATGCGTTGATCAATTGTTTTTGTAAGTTTGAGAAGATGCCTCGAGCTTTTGAGTATCTCTCTGAGATGAAGAACAATGGGTTAAAACCAAATGTTGTAACATATAGCACATTGATTGATGCTTTTTGCAAGGAGGGAATGATGCAATATGCCATCAAACTTTTTGTTGATATGAGAAGAGTTGGCCTGCTACCTAATGAATTCACCTACACTTCTCTGATTGATGCCAATTGTAAGGCAGGTAACTTAACAGAAGCATGGAAGTTGTCCAACGATATGTTGCAGGCAGGATTTAATTTAAATGTAGTAACCTATACAGCTCTAATGGATGGGCTTTGTGAAGATGGAAGAATGATGGAAGCGGAAGAAGTGTTTAGGGCAATGCTGAAAGATGGACTATCGCCCAACCAGCAGGTTTACACTGCTTTGGTTCATGGCTATATTAAGGCAGAGAGAATGGAGGATGCAATGGAAACATTGAAGCAAATGACAGAATGTAACATCAAACCGGATTTAATACTCTATGGCACCATTATTTGGGGTCTCTGTAGTCAAAACAAACTTGAAGAATCTAAACTTATTATTAAAGAAATGAAAAGTCAGGGTATTAGTGCAAATCCTGTTATATACACAACAATTATGGATGCTTATTTTAAGGCTGGAAAAGGCTCAGATGCAATAAATCTTCTTCATAAGATGCAGGATATGGGTGTTGAGGCTACTGTTGTAACCTACTGTGTACTAATTGATGGTTTGTGCAAAACAGGTATGGTCGAACTGGCAGTTGATTATTTTGGTAGAATGTCTGATCTTGGTTTACAACCTAATGTTGCAGTTTATACGGCCCTTATTGATGGTCTTTGTAAAACTAATTGCATTGAGTCTGCCAAAAAGTTGTTTGATGAAATGCAATATAGGGGTATGACCCCAGATAAAACAGCTTTTACTGCTCTTATTGATGGCAACTTGAAGCTTGGAAATCTTCAGGAAGCTTTGGATTTGATTAGCAGAATGACAGACTTAGCTATTGAGTTTGATTTACATGCTTATACCTCCATGGTTTCGGGATTTTCTCAATGTGGTGACCTGCATCAAGCGAGGAAGTTTTTTAATGAAATGATTGAGAAAGGCATACTTCCCGAGGAGATTTTATGTACATGTCTACTGAGAGAGTATTACAAGCTTGGACAGTTGGACGAAGCCATTGAATTGAAGAATGAAATGAGAAGGAGGGGTTTAATTACTGAAAACTGTAGCCTTGGAGTTCCCAGTCTTAGAACTTGA

Protein sequence

MLLFFRGLFQVSRRASYRDLWNDPKIVILFDSALAPIWVSKILVELKEDPKLALKFFKWAGSQIGFCHTTESYCIIAHMLFCARMYMNAHDIIKEVILKCRIDMTFPVCNIFDMLWSTRNVCVSGTGVFDILFSVLVELGLLEEANECFSRMRKFRTLPKARSCNFLLHRLSKSGNGQLVKKFFNDMIGAGIAPSVFTYNVMIDYLCKEGDLENARRLFVQMRQMGFSPDVVTYNSLIDGYGKVGLLEESVYLFEEMKDIGCVPDVITYNALINCFCKFEKMPRAFEYLSEMKNNGLKPNVVTYSTLIDAFCKEGMMQYAIKLFVDMRRVGLLPNEFTYTSLIDANCKAGNLTEAWKLSNDMLQAGFNLNVVTYTALMDGLCEDGRMMEAEEVFRAMLKDGLSPNQQVYTALVHGYIKAERMEDAMETLKQMTECNIKPDLILYGTIIWGLCSQNKLEESKLIIKEMKSQGISANPVIYTTIMDAYFKAGKGSDAINLLHKMQDMGVEATVVTYCVLIDGLCKTGMVELAVDYFGRMSDLGLQPNVAVYTALIDGLCKTNCIESAKKLFDEMQYRGMTPDKTAFTALIDGNLKLGNLQEALDLISRMTDLAIEFDLHAYTSMVSGFSQCGDLHQARKFFNEMIEKGILPEEILCTCLLREYYKLGQLDEAIELKNEMRRRGLITENCSLGVPSLRT
Homology
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BLAST of Carg01341 vs. NCBI nr
Match: XP_022938692.1 (putative pentatricopeptide repeat-containing protein At2g02150, partial [Cucurbita moschata])

HSP 1 Score: 354.8 bits (909), Expect = 6.9e-94
Identity = 188/264 (71.21%), Postives = 188/264 (71.21%), Query Frame = 0 

Query: 1   MLLFFRGLFQVSRRASYR------------------------------------------ 60
           MLLFFRGLFQVSRRASYR                                          
Sbjct: 12  MLLFFRGLFQVSRRASYRVISLSSNSSHPGCLSFNAFNASSSLTSINGCYISCLWFASFL 71

Query: 61  -------------------------------DLWNDPKIVILFDSALAPIWVSKILVELK 120
                                          DLWNDPKIVILFDSALAPIWVSKILVELK
Sbjct: 72  CIFRLPFVSYSNTNSSFESLDIGSLRKIIQQDLWNDPKIVILFDSALAPIWVSKILVELK 131

Query: 121 EDPKLALKFFKWAGSQIGFCHTTESYCIIAHMLFCARMYMNAHDIIKEVILKCRIDMTFP 180
           EDPKLALKFFKWAGSQIGFCHTTESYCIIAHMLFCARMY NAHDIIKEVILKCRIDM FP
Sbjct: 132 EDPKLALKFFKWAGSQIGFCHTTESYCIIAHMLFCARMYTNAHDIIKEVILKCRIDMIFP 191

Query: 181 VCNIFDMLWSTRNVCVSGTGVFDILFSVLVELGLLEEANECFSRMRKFRTLPKARSCNFL 192
           VCNIFDMLWSTRNVCVSGTGVFDILFSVLVELGLLEEANECFSRMRKFRTLPKARSCNFL
Sbjct: 192 VCNIFDMLWSTRNVCVSGTGVFDILFSVLVELGLLEEANECFSRMRKFRTLPKARSCNFL 251

[Close]
BLAST of Carg01341 vs. NCBI nr
Match: XP_022993399.1 (putative pentatricopeptide repeat-containing protein At2g02150 isoform X1 [Cucurbita maxima] >XP_022993400.1 putative pentatricopeptide repeat-containing protein At2g02150 isoform X1 [Cucurbita maxima] >XP_022993401.1 putative pentatricopeptide repeat-containing protein At2g02150 isoform X1 [Cucurbita maxima] >XP_022993402.1 putative pentatricopeptide repeat-containing protein At2g02150 isoform X1 [Cucurbita maxima] >XP_022993404.1 putative pentatricopeptide repeat-containing protein At2g02150 isoform X1 [Cucurbita maxima] >XP_022993405.1 putative pentatricopeptide repeat-containing protein At2g02150 isoform X1 [Cucurbita maxima])

HSP 1 Score: 354.8 bits (909), Expect = 6.9e-94
Identity = 188/264 (71.21%), Postives = 188/264 (71.21%), Query Frame = 0 

Query: 1   MLLFFRGLFQVSRRASYR------------------------------------------ 60
           MLLFFRGLFQVSRRASYR                                          
Sbjct: 1   MLLFFRGLFQVSRRASYRVISLSSNSSHPGCLSSNAFNASSSLTSINGYYISCFWFTSFV 60

Query: 61  -------------------------------DLWNDPKIVILFDSALAPIWVSKILVELK 120
                                          DLWNDPKIVILFDSALAPIWVSKILVELK
Sbjct: 61  CMFRLPFVSYSNTNSSFELLDIGYLRKIIQQDLWNDPKIVILFDSALAPIWVSKILVELK 120

Query: 121 EDPKLALKFFKWAGSQIGFCHTTESYCIIAHMLFCARMYMNAHDIIKEVILKCRIDMTFP 180
           EDPKLALKFFKWAGSQIGFCH TESYCIIAHMLFCARMY NAHDIIKEVILKCRIDM FP
Sbjct: 121 EDPKLALKFFKWAGSQIGFCHATESYCIIAHMLFCARMYTNAHDIIKEVILKCRIDMIFP 180

Query: 181 VCNIFDMLWSTRNVCVSGTGVFDILFSVLVELGLLEEANECFSRMRKFRTLPKARSCNFL 192
           VCNIFDMLWSTRNVCVSGTGVFDILFSVLVELGLLEEANECFSRMRKFRTLPKARSCNFL
Sbjct: 181 VCNIFDMLWSTRNVCVSGTGVFDILFSVLVELGLLEEANECFSRMRKFRTLPKARSCNFL 240

[Close]
BLAST of Carg01341 vs. NCBI nr
Match: XP_023550125.1 (putative pentatricopeptide repeat-containing protein At2g02150 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 353.2 bits (905), Expect = 2.0e-93
Identity = 169/179 (94.41%), Postives = 173/179 (96.65%), Query Frame = 0 

Query: 13  RRASYRDLWNDPKIVILFDSALAPIWVSKILVELKEDPKLALKFFKWAGSQIGFCHTTES 72
           R+   +DLWNDPKIVILFDSALAPIWVSKILVELKEDPKLA KFFKWAGSQIGFCHTTES
Sbjct: 86  RKIIQQDLWNDPKIVILFDSALAPIWVSKILVELKEDPKLAFKFFKWAGSQIGFCHTTES 145

Query: 73  YCIIAHMLFCARMYMNAHDIIKEVILKCRIDMTFPVCNIFDMLWSTRNVCVSGTGVFDIL 132
           YCIIAHMLFCARMY NAHDIIKEVILKCRIDM FP+CNIFDMLWSTRNVCVSGTGVFDIL
Sbjct: 146 YCIIAHMLFCARMYTNAHDIIKEVILKCRIDMIFPLCNIFDMLWSTRNVCVSGTGVFDIL 205

Query: 133 FSVLVELGLLEEANECFSRMRKFRTLPKARSCNFLLHRLSKSGNGQLVKKFFNDMIGAG 192
           FSVLVELGLLEEANECFSRMRKFRTLPKARSCNFLLHRLSKSGNGQLV+KFFNDMIGAG
Sbjct: 206 FSVLVELGLLEEANECFSRMRKFRTLPKARSCNFLLHRLSKSGNGQLVRKFFNDMIGAG 264

[Close]
BLAST of Carg01341 vs. NCBI nr
Match: XP_022959718.1 (putative pentatricopeptide repeat-containing protein At2g02150 isoform X3 [Cucurbita moschata])

HSP 1 Score: 322.4 bits (825), Expect = 3.8e-84
Identity = 152/179 (84.92%), Postives = 166/179 (92.74%), Query Frame = 0 

Query: 13  RRASYRDLWNDPKIVILFDSALAPIWVSKILVELKEDPKLALKFFKWAGSQIGFCHTTES 72
           R+   +DLWNDPKIV+LFDSALAPIWVSKILVELKEDPKLALKFFKWAG+ IGF HTTES
Sbjct: 104 RKIIQQDLWNDPKIVVLFDSALAPIWVSKILVELKEDPKLALKFFKWAGTHIGFRHTTES 163

Query: 73  YCIIAHMLFCARMYMNAHDIIKEVILKCRIDMTFPVCNIFDMLWSTRNVCVSGTGVFDIL 132
           YCII HMLF ARMY NAHDI+KE++LK R D+  PVCN+FD+LWSTRN CVSGTGVFD+L
Sbjct: 164 YCIIVHMLFRARMYTNAHDIMKEMVLKSRTDLILPVCNVFDILWSTRNFCVSGTGVFDVL 223

Query: 133 FSVLVELGLLEEANECFSRMRKFRTLPKARSCNFLLHRLSKSGNGQLVKKFFNDMIGAG 192
           FSVLVELGLLEEANECFS+MRKFRTLPKARSCNFLLHRLSKSGNGQLV+KFF+DMIGAG
Sbjct: 224 FSVLVELGLLEEANECFSKMRKFRTLPKARSCNFLLHRLSKSGNGQLVRKFFHDMIGAG 282

[Close]
BLAST of Carg01341 vs. NCBI nr
Match: XP_022959725.1 (putative pentatricopeptide repeat-containing protein At2g02150 isoform X4 [Cucurbita moschata])

HSP 1 Score: 322.4 bits (825), Expect = 3.8e-84
Identity = 152/179 (84.92%), Postives = 166/179 (92.74%), Query Frame = 0 

Query: 13  RRASYRDLWNDPKIVILFDSALAPIWVSKILVELKEDPKLALKFFKWAGSQIGFCHTTES 72
           R+   +DLWNDPKIV+LFDSALAPIWVSKILVELKEDPKLALKFFKWAG+ IGF HTTES
Sbjct: 104 RKIIQQDLWNDPKIVVLFDSALAPIWVSKILVELKEDPKLALKFFKWAGTHIGFRHTTES 163

Query: 73  YCIIAHMLFCARMYMNAHDIIKEVILKCRIDMTFPVCNIFDMLWSTRNVCVSGTGVFDIL 132
           YCII HMLF ARMY NAHDI+KE++LK R D+  PVCN+FD+LWSTRN CVSGTGVFD+L
Sbjct: 164 YCIIVHMLFRARMYTNAHDIMKEMVLKSRTDLILPVCNVFDILWSTRNFCVSGTGVFDVL 223

Query: 133 FSVLVELGLLEEANECFSRMRKFRTLPKARSCNFLLHRLSKSGNGQLVKKFFNDMIGAG 192
           FSVLVELGLLEEANECFS+MRKFRTLPKARSCNFLLHRLSKSGNGQLV+KFF+DMIGAG
Sbjct: 224 FSVLVELGLLEEANECFSKMRKFRTLPKARSCNFLLHRLSKSGNGQLVRKFFHDMIGAG 282

[Close]
BLAST of Carg01341 vs. TAIR10
Match: AT2G02150.1 (Tetratricopeptide repeat (TPR)-like superfamily protein)

HSP 1 Score: 213.8 bits (543), Expect = 3.4e-55
Identity = 98/161 (60.87%), Postives = 128/161 (79.50%), Query Frame = 0 

Query: 13  RRASYRDLWNDPKIVILFDSALAPIWVSKILVELKEDPKLALKFFKWAGSQIGFCHTTES 72
           R+  + DLW+DP +  LFD  LAPIWV ++LVELKEDPKLA KFFKW+ ++ GF H+ ES
Sbjct: 85  RKVVHNDLWDDPGLEKLFDLTLAPIWVPRVLVELKEDPKLAFKFFKWSMTRNGFKHSVES 144

Query: 73  YCIIAHMLFCARMYMNAHDIIKEVILKCRIDMTFPVCNIFDMLWSTRNVCVSGTGVFDIL 132
           YCI+AH+LFCARMY +A+ ++KE++L  + D     C++FD+LWSTRNVCV G GVFD L
Sbjct: 145 YCIVAHILFCARMYYDANSVLKEMVLS-KAD-----CDVFDVLWSTRNVCVPGFGVFDAL 204

Query: 133 FSVLVELGLLEEANECFSRMRKFRTLPKARSCNFLLHRLSK 174
           FSVL++LG+LEEA +CFS+M++FR  PK RSCN LLHR +K
Sbjct: 205 FSVLIDLGMLEEAIQCFSKMKRFRVFPKTRSCNGLLHRFAK 239

[Close]
BLAST of Carg01341 vs. TAIR10
Match: AT5G59900.1 (Pentatricopeptide repeat (PPR) superfamily protein)

HSP 1 Score: 77.4 bits (189), Expect = 3.8e-14
Identity = 50/162 (30.86%), Postives = 83/162 (51.23%), Query Frame = 0 

Query: 29  LFDSALAPIWVSKILVELKEDPKLALKFFKWAGSQIGFCHTTESYCIIAHMLFCARMYMN 88
           L    L  + V +IL+   +DPKL L+FF + G   GF H+T S+CI+ H L  A ++  
Sbjct: 63  LVSRRLKTVHVEEILIGTIDDPKLGLRFFNFLGLHRGFDHSTASFCILIHALVKANLFWP 122

Query: 89  AHDIIKEVILKCRIDMTFPVCNIFDMLWSTRNVC-VSGTGVFDILFSVLVELGLLEEANE 148
           A  +++ ++L+          ++F++L+S    C +S +  FD+L    V    + +   
Sbjct: 123 ASSLLQTLLLR-----ALKPSDVFNVLFSCYEKCKLSSSSSFDLLIQHYVRSRRVLDGVL 182

Query: 149 CFSRM-RKFRTLPKARSCNFLLHRLSKSGNGQLVKKFFNDMI 189
            F  M  K   LP+ R+ + LLH L K  +  L  + FNDM+
Sbjct: 183 VFKMMITKVSLLPEVRTLSALLHGLVKFRHFGLAMELFNDMV 219

[Close]
BLAST of Carg01341 vs. TAIR10
Match: AT5G55840.1 (Pentatricopeptide repeat (PPR) superfamily protein)

HSP 1 Score: 75.9 bits (185), Expect = 1.1e-13
Identity = 49/140 (35.00%), Postives = 70/140 (50.00%), Query Frame = 0 

Query: 51  KLALKFFKWAGSQIGF--CHTTESYCIIAHMLFCARMYMNAHDIIKEVILKCRIDMTFPV 110
           KLALKF KW   Q G    H  +  CI  H+L  ARMY  A  I+KE+ L     M+   
Sbjct: 91  KLALKFLKWVVKQPGLETDHIVQLVCITTHILVRARMYDPARHILKELSL-----MSGKS 150

Query: 111 CNIFDMLWSTRNVCVSGTGVFDILFSVLVELGLLEEANECFSRMRKFRTLPKARSCNFLL 170
             +F  L +T  +C S   V+DIL  V +  G+++++ E F  M  +   P   +CN +L
Sbjct: 151 SFVFGALMTTYRLCNSNPSVYDILIRVYLREGMIQDSLEIFRLMGLYGFNPSVYTCNAIL 210

Query: 171 HRLSKSGNGQLVKKFFNDMI 189
             + KSG    V  F  +M+
Sbjct: 211 GSVVKSGEDVSVWSFLKEML 225

[Close]
BLAST of Carg01341 vs. TAIR10
Match: AT1G05670.1 (Pentatricopeptide repeat (PPR-like) superfamily protein)

HSP 1 Score: 74.7 bits (182), Expect = 2.5e-13
Identity = 48/137 (35.04%), Postives = 69/137 (50.36%), Query Frame = 0 

Query: 37  IWVSKILVELKEDPKLALKFFKWAGSQIGFCHTTESYCIIAHMLFCARMYMNAHDIIKEV 96
           IWV   L+++K D +L L FF WA S+       ES CI+ H+   ++    A  +I   
Sbjct: 91  IWV---LMKIKCDYRLVLDFFDWARSRRD--SNLESLCIVIHLAVASKDLKVAQSLISSF 150

Query: 97  ILKCRIDMTFPVCNIFDMLWSTRNVCVSGTGVFDILFSVLVELGLLEEANECFSRMRKFR 156
             + ++++T      FD+L  T     S   VFD+ F VLV+ GLL EA   F +M  + 
Sbjct: 151 WERPKLNVTDSFVQFFDLLVYTYKDWGSDPRVFDVFFQVLVDFGLLREARRVFEKMLNYG 210

Query: 157 TLPKARSCNFLLHRLSK 174
            +    SCN  L RLSK
Sbjct: 211 LVLSVDSCNVYLTRLSK 222

[Close]
BLAST of Carg01341 vs. TAIR10
Match: AT1G66345.1 (Pentatricopeptide repeat (PPR) superfamily protein)

HSP 1 Score: 54.3 bits (129), Expect = 3.5e-07
Identity = 47/177 (26.55%), Postives = 76/177 (42.94%), Query Frame = 0 

Query: 11  VSRRASYRDLWNDPKIVILFDSA-LAPIWVSKILVELK--EDPKLALKFFKWAGSQIGFC 70
           +S+     D W    +   F S  L+   +  IL+  K  E  K AL FF W+       
Sbjct: 53  ISKSLQSNDTWE--TLSTKFSSIDLSDSLIETILLRFKNPETAKQALSFFHWSSHTRNLR 112

Query: 71  HTTESYCIIAHMLFCARMYMNAHDIIKEVILKCRIDMTFPVCNIFDMLWSTRNVCVSGTG 130
           H  +SY +  H+L  AR+ ++A  +I+  +L      + P  ++ D L  T  +  S   
Sbjct: 113 HGIKSYALTIHILVKARLLIDARALIESSLLN-----SPPDSDLVDSLLDTYEISSSTPL 172

Query: 131 VFDILFSVLVELGLLEEANECFSRMRKFRTLPKARSCNFLLHRLSKSGNGQLVKKFF 185
           VFD+L     ++  LE   + F R+          + N L+H  SKS    LV + +
Sbjct: 173 VFDLLVQCYAKIRYLELGFDVFKRLCDCGFTLSVITLNTLIHYSSKSKIDDLVWRIY 222

[Close]
BLAST of Carg01341 vs. Swiss-Prot
Match: sp|P0C894|PP143_ARATH (Putative pentatricopeptide repeat-containing protein At2g02150 OS=Arabidopsis thaliana OX=3702 GN=At2g02150 PE=3 SV=1)

HSP 1 Score: 213.8 bits (543), Expect = 6.2e-54
Identity = 98/161 (60.87%), Postives = 128/161 (79.50%), Query Frame = 0 

Query: 13  RRASYRDLWNDPKIVILFDSALAPIWVSKILVELKEDPKLALKFFKWAGSQIGFCHTTES 72
           R+  + DLW+DP +  LFD  LAPIWV ++LVELKEDPKLA KFFKW+ ++ GF H+ ES
Sbjct: 85  RKVVHNDLWDDPGLEKLFDLTLAPIWVPRVLVELKEDPKLAFKFFKWSMTRNGFKHSVES 144

Query: 73  YCIIAHMLFCARMYMNAHDIIKEVILKCRIDMTFPVCNIFDMLWSTRNVCVSGTGVFDIL 132
           YCI+AH+LFCARMY +A+ ++KE++L  + D     C++FD+LWSTRNVCV G GVFD L
Sbjct: 145 YCIVAHILFCARMYYDANSVLKEMVLS-KAD-----CDVFDVLWSTRNVCVPGFGVFDAL 204

Query: 133 FSVLVELGLLEEANECFSRMRKFRTLPKARSCNFLLHRLSK 174
           FSVL++LG+LEEA +CFS+M++FR  PK RSCN LLHR +K
Sbjct: 205 FSVLIDLGMLEEAIQCFSKMKRFRVFPKTRSCNGLLHRFAK 239

[Close]
BLAST of Carg01341 vs. Swiss-Prot
Match: sp|Q9FJE6|PP437_ARATH (Putative pentatricopeptide repeat-containing protein At5g59900 OS=Arabidopsis thaliana OX=3702 GN=At5g59900 PE=3 SV=1)

HSP 1 Score: 77.4 bits (189), Expect = 6.9e-13
Identity = 50/162 (30.86%), Postives = 83/162 (51.23%), Query Frame = 0 

Query: 29  LFDSALAPIWVSKILVELKEDPKLALKFFKWAGSQIGFCHTTESYCIIAHMLFCARMYMN 88
           L    L  + V +IL+   +DPKL L+FF + G   GF H+T S+CI+ H L  A ++  
Sbjct: 63  LVSRRLKTVHVEEILIGTIDDPKLGLRFFNFLGLHRGFDHSTASFCILIHALVKANLFWP 122

Query: 89  AHDIIKEVILKCRIDMTFPVCNIFDMLWSTRNVC-VSGTGVFDILFSVLVELGLLEEANE 148
           A  +++ ++L+          ++F++L+S    C +S +  FD+L    V    + +   
Sbjct: 123 ASSLLQTLLLR-----ALKPSDVFNVLFSCYEKCKLSSSSSFDLLIQHYVRSRRVLDGVL 182

Query: 149 CFSRM-RKFRTLPKARSCNFLLHRLSKSGNGQLVKKFFNDMI 189
            F  M  K   LP+ R+ + LLH L K  +  L  + FNDM+
Sbjct: 183 VFKMMITKVSLLPEVRTLSALLHGLVKFRHFGLAMELFNDMV 219

[Close]
BLAST of Carg01341 vs. Swiss-Prot
Match: sp|Q9LVQ5|PP432_ARATH (Pentatricopeptide repeat-containing protein At5g55840 OS=Arabidopsis thaliana OX=3702 GN=At5g55840 PE=3 SV=2)

HSP 1 Score: 75.9 bits (185), Expect = 2.0e-12
Identity = 49/140 (35.00%), Postives = 70/140 (50.00%), Query Frame = 0 

Query: 51  KLALKFFKWAGSQIGF--CHTTESYCIIAHMLFCARMYMNAHDIIKEVILKCRIDMTFPV 110
           KLALKF KW   Q G    H  +  CI  H+L  ARMY  A  I+KE+ L     M+   
Sbjct: 51  KLALKFLKWVVKQPGLETDHIVQLVCITTHILVRARMYDPARHILKELSL-----MSGKS 110

Query: 111 CNIFDMLWSTRNVCVSGTGVFDILFSVLVELGLLEEANECFSRMRKFRTLPKARSCNFLL 170
             +F  L +T  +C S   V+DIL  V +  G+++++ E F  M  +   P   +CN +L
Sbjct: 111 SFVFGALMTTYRLCNSNPSVYDILIRVYLREGMIQDSLEIFRLMGLYGFNPSVYTCNAIL 170

Query: 171 HRLSKSGNGQLVKKFFNDMI 189
             + KSG    V  F  +M+
Sbjct: 171 GSVVKSGEDVSVWSFLKEML 185

[Close]
BLAST of Carg01341 vs. Swiss-Prot
Match: sp|Q0WVK7|PPR12_ARATH (Pentatricopeptide repeat-containing protein At1g05670, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=At1g05670 PE=2 SV=1)

HSP 1 Score: 74.7 bits (182), Expect = 4.5e-12
Identity = 48/137 (35.04%), Postives = 69/137 (50.36%), Query Frame = 0 

Query: 37  IWVSKILVELKEDPKLALKFFKWAGSQIGFCHTTESYCIIAHMLFCARMYMNAHDIIKEV 96
           IWV   L+++K D +L L FF WA S+       ES CI+ H+   ++    A  +I   
Sbjct: 91  IWV---LMKIKCDYRLVLDFFDWARSRRD--SNLESLCIVIHLAVASKDLKVAQSLISSF 150

Query: 97  ILKCRIDMTFPVCNIFDMLWSTRNVCVSGTGVFDILFSVLVELGLLEEANECFSRMRKFR 156
             + ++++T      FD+L  T     S   VFD+ F VLV+ GLL EA   F +M  + 
Sbjct: 151 WERPKLNVTDSFVQFFDLLVYTYKDWGSDPRVFDVFFQVLVDFGLLREARRVFEKMLNYG 210

Query: 157 TLPKARSCNFLLHRLSK 174
            +    SCN  L RLSK
Sbjct: 211 LVLSVDSCNVYLTRLSK 222

[Close]
BLAST of Carg01341 vs. Swiss-Prot
Match: sp|Q3ECH5|PP107_ARATH (Pentatricopeptide repeat-containing protein At1g66345, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=At1g66345 PE=3 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 6.3e-06
Identity = 47/177 (26.55%), Postives = 76/177 (42.94%), Query Frame = 0 

Query: 11  VSRRASYRDLWNDPKIVILFDSA-LAPIWVSKILVELK--EDPKLALKFFKWAGSQIGFC 70
           +S+     D W    +   F S  L+   +  IL+  K  E  K AL FF W+       
Sbjct: 53  ISKSLQSNDTWE--TLSTKFSSIDLSDSLIETILLRFKNPETAKQALSFFHWSSHTRNLR 112

Query: 71  HTTESYCIIAHMLFCARMYMNAHDIIKEVILKCRIDMTFPVCNIFDMLWSTRNVCVSGTG 130
           H  +SY +  H+L  AR+ ++A  +I+  +L      + P  ++ D L  T  +  S   
Sbjct: 113 HGIKSYALTIHILVKARLLIDARALIESSLLN-----SPPDSDLVDSLLDTYEISSSTPL 172

Query: 131 VFDILFSVLVELGLLEEANECFSRMRKFRTLPKARSCNFLLHRLSKSGNGQLVKKFF 185
           VFD+L     ++  LE   + F R+          + N L+H  SKS    LV + +
Sbjct: 173 VFDLLVQCYAKIRYLELGFDVFKRLCDCGFTLSVITLNTLIHYSSKSKIDDLVWRIY 222

[Close]
BLAST of Carg01341 vs. TrEMBL
Match: tr|A0A1S3CT40|A0A1S3CT40_CUCME (putative pentatricopeptide repeat-containing protein At2g02150 OS=Cucumis melo OX=3656 GN=LOC103503999 PE=4 SV=1)

HSP 1 Score: 318.5 bits (815), Expect = 3.6e-83
Identity = 150/177 (84.75%), Postives = 164/177 (92.66%), Query Frame = 0 

Query: 13  RRASYRDLWNDPKIVILFDSALAPIWVSKILVELKEDPKLALKFFKWAGSQIGFCHTTES 72
           R+   +DLWNDPKIV+LFDSALAPIWVS+ILV LKEDPKLALKFFKWAGSQ+GF HTTES
Sbjct: 107 RKIIQQDLWNDPKIVVLFDSALAPIWVSRILVGLKEDPKLALKFFKWAGSQVGFRHTTES 166

Query: 73  YCIIAHMLFCARMYMNAHDIIKEVILKCRIDMTFPVCNIFDMLWSTRNVCVSGTGVFDIL 132
           YCII H++F ARMY +AHD +KEVI+K RIDM FPVCNIFDMLWSTRN+CVSG+GVFD+L
Sbjct: 167 YCIIVHLVFRARMYTDAHDTVKEVIMKNRIDMGFPVCNIFDMLWSTRNICVSGSGVFDVL 226

Query: 133 FSVLVELGLLEEANECFSRMRKFRTLPKARSCNFLLHRLSKSGNGQLVKKFFNDMIG 190
           FSV VELGLLEEANECFSRMR FRTLPKARSCNFLLHRLSKSGNGQLV+KFFNDMIG
Sbjct: 227 FSVFVELGLLEEANECFSRMRNFRTLPKARSCNFLLHRLSKSGNGQLVRKFFNDMIG 283

[Close]
BLAST of Carg01341 vs. TrEMBL
Match: tr|A0A0A0KPW1|A0A0A0KPW1_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G114630 PE=4 SV=1)

HSP 1 Score: 285.0 bits (728), Expect = 4.4e-73
Identity = 133/162 (82.10%), Postives = 148/162 (91.36%), Query Frame = 0 

Query: 13  RRASYRDLWNDPKIVILFDSALAPIWVSKILVELKEDPKLALKFFKWAGSQIGFCHTTES 72
           R+   +DLWNDPKIV+LFDSALAPIWVSKIL+ L+EDPKLALKFFKWAGSQ+GF HTTES
Sbjct: 106 RKIIQQDLWNDPKIVVLFDSALAPIWVSKILLGLREDPKLALKFFKWAGSQVGFRHTTES 165

Query: 73  YCIIAHMLFCARMYMNAHDIIKEVILKCRIDMTFPVCNIFDMLWSTRNVCVSGTGVFDIL 132
           YCII H++F ARMY +AHD +KEVI+  R+DM FPVCNIFDMLWSTRN+CVSG+GVFD+L
Sbjct: 166 YCIIVHLVFRARMYTDAHDTVKEVIMNSRMDMGFPVCNIFDMLWSTRNICVSGSGVFDVL 225

Query: 133 FSVLVELGLLEEANECFSRMRKFRTLPKARSCNFLLHRLSKS 175
           FSV VELGLLEEANECFSRMR FRTLPKARSCNFLLHRLSKS
Sbjct: 226 FSVFVELGLLEEANECFSRMRNFRTLPKARSCNFLLHRLSKS 267

[Close]
BLAST of Carg01341 vs. TrEMBL
Match: tr|A0A2R6QQK9|A0A2R6QQK9_ACTCH (Pentatricopeptide repeat-containing protein OS=Actinidia chinensis var. chinensis OX=1590841 GN=CEY00_Acc14011 PE=4 SV=1)

HSP 1 Score: 235.7 bits (600), Expect = 3.1e-58
Identity = 109/163 (66.87%), Postives = 135/163 (82.82%), Query Frame = 0 

Query: 21  WNDPKIVILFDSALAPIWVSKILVELKEDPKLALKFFKWAGSQIGFCHTTESYCIIAHML 80
           W D +I  LFD+ALAPIWVS+ILV LKE+P LALKFFKWA  +IGF HTTESYC++AH+L
Sbjct: 114 WEDNRIAALFDTALAPIWVSRILVGLKEEPILALKFFKWAKRRIGFRHTTESYCLLAHIL 173

Query: 81  FCARMYMNAHDIIKEVILKCRIDMTFPVCNIFDMLWSTRNVCVSGTGVFDILFSVLVELG 140
           FC+RMY++AHDI+K++I   R+   FP C+ FD+LWSTRNVC+ G GVFD  FSVLVELG
Sbjct: 174 FCSRMYIDAHDILKDLITSTRV---FPGCDTFDVLWSTRNVCIPGYGVFDTFFSVLVELG 233

Query: 141 LLEEANECFSRMRKFRTLPKARSCNFLLHRLSKSGNGQLVKKF 184
           +LEEA+ECF RM+ F+  PK RSCN+LL RLSK+GNG+L +KF
Sbjct: 234 MLEEASECFLRMKSFKVRPKVRSCNYLLQRLSKTGNGELSRKF 273

[Close]
BLAST of Carg01341 vs. TrEMBL
Match: tr|A0A251R7L2|A0A251R7L2_PRUPE (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_1G342600 PE=4 SV=1)

HSP 1 Score: 235.3 bits (599), Expect = 4.0e-58
Identity = 111/168 (66.07%), Postives = 134/168 (79.76%), Query Frame = 0 

Query: 19  DLWNDPKIVILFDSALAPIWVSKILVELKEDPKLALKFFKWAGSQIGFCHTTESYCIIAH 78
           D W+DP+IV LF SALAPIWVSK LVEL+ DPKLALK F+W+ ++IGFCHTTESYCI+ H
Sbjct: 133 DYWDDPRIVNLFGSALAPIWVSKFLVELRGDPKLALKLFRWSKTRIGFCHTTESYCILVH 192

Query: 79  MLFCARMYMNAHDIIKEVILKCRIDMTFPVCNIFDMLWSTRNVCVSGTGVFDILFSVLVE 138
           +LF ARMY +AH+I+KE++   R+    P C++FD+LWSTRNVC  G GVFD LFSVLVE
Sbjct: 193 ILFYARMYFDAHEILKELVSLRRV---LPGCDVFDVLWSTRNVCRLGFGVFDALFSVLVE 252

Query: 139 LGLLEEANECFSRMRKFRTLPKARSCNFLLHRLSKSGNGQLVKKFFND 187
            G+LE+A+ECF RM+KFR LPK RSCN LL RLSK G G   +KFF D
Sbjct: 253 FGMLEKASECFLRMKKFRVLPKVRSCNALLQRLSKPGKGNFSRKFFKD 297

[Close]
BLAST of Carg01341 vs. TrEMBL
Match: tr|A0A2I4GDJ2|A0A2I4GDJ2_9ROSI (putative pentatricopeptide repeat-containing protein At2g02150 OS=Juglans regia OX=51240 GN=LOC109006962 PE=4 SV=1)

HSP 1 Score: 231.1 bits (588), Expect = 7.6e-57
Identity = 108/162 (66.67%), Postives = 132/162 (81.48%), Query Frame = 0 

Query: 18  RDLWNDPKIVILFDSALAPIWVSKILVELKEDPKLALKFFKWAGSQIGFCHTTESYCIIA 77
           ++ W D +I+ LFDSALAPIW+S++LVELK DPKLAL+FFKW GS+IGFCHTTESYCI+ 
Sbjct: 109 QEQWEDNRIIGLFDSALAPIWMSRVLVELKGDPKLALRFFKWTGSRIGFCHTTESYCILI 168

Query: 78  HMLFCARMYMNAHDIIKEVILKCRIDMTFPVCNIFDMLWSTRNVCVSGTGVFDILFSVLV 137
           H+LF ARMY + H II+E++L   +    P C++FD+LWSTR VCV G GVFD LFSV+ 
Sbjct: 169 HILFYARMYFDTHRIIRELVL---LKWVLPGCHVFDVLWSTRGVCVPGFGVFDALFSVVT 228

Query: 138 ELGLLEEANECFSRMRKFRTLPKARSCNFLLHRLSKSGNGQL 180
           ELG+LEEA+ECF RM K+R LPKARSCN LLHRLSKSG  +L
Sbjct: 229 ELGMLEEASECFLRMEKYRVLPKARSCNELLHRLSKSGKREL 267

The following BLAST results are available for this feature:
BLAST of Carg01341 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022938692.16.9e-9471.21putative pentatricopeptide repeat-containing protein At2g02150, partial [Cucurbi... [more]
XP_022993399.16.9e-9471.21putative pentatricopeptide repeat-containing protein At2g02150 isoform X1 [Cucur... [more]
XP_023550125.12.0e-9394.41putative pentatricopeptide repeat-containing protein At2g02150 [Cucurbita pepo s... [more]
XP_022959718.13.8e-8484.92putative pentatricopeptide repeat-containing protein At2g02150 isoform X3 [Cucur... [more]
XP_022959725.13.8e-8484.92putative pentatricopeptide repeat-containing protein At2g02150 isoform X4 [Cucur... [more]
BLAST of Carg01341 vs. TAIR10
Match NameE-valueIdentityDescription
AT2G02150.13.4e-5560.87Tetratricopeptide repeat (TPR)-like superfamily protein[more]
AT5G59900.13.8e-1430.86Pentatricopeptide repeat (PPR) superfamily protein[more]
AT5G55840.11.1e-1335.00Pentatricopeptide repeat (PPR) superfamily protein[more]
AT1G05670.12.5e-1335.04Pentatricopeptide repeat (PPR-like) superfamily protein[more]
AT1G66345.13.5e-0726.55Pentatricopeptide repeat (PPR) superfamily protein[more]
BLAST of Carg01341 vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|P0C894|PP143_ARATH6.2e-5460.87Putative pentatricopeptide repeat-containing protein At2g02150 OS=Arabidopsis th... [more]
sp|Q9FJE6|PP437_ARATH6.9e-1330.86Putative pentatricopeptide repeat-containing protein At5g59900 OS=Arabidopsis th... [more]
sp|Q9LVQ5|PP432_ARATH2.0e-1235.00Pentatricopeptide repeat-containing protein At5g55840 OS=Arabidopsis thaliana OX... [more]
sp|Q0WVK7|PPR12_ARATH4.5e-1235.04Pentatricopeptide repeat-containing protein At1g05670, mitochondrial OS=Arabidop... [more]
sp|Q3ECH5|PP107_ARATH6.3e-0626.55Pentatricopeptide repeat-containing protein At1g66345, mitochondrial OS=Arabidop... [more]
BLAST of Carg01341 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A1S3CT40|A0A1S3CT40_CUCME3.6e-8384.75putative pentatricopeptide repeat-containing protein At2g02150 OS=Cucumis melo O... [more]
tr|A0A0A0KPW1|A0A0A0KPW1_CUCSA4.4e-7382.10Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G114630 PE=4 SV=1[more]
tr|A0A2R6QQK9|A0A2R6QQK9_ACTCH3.1e-5866.87Pentatricopeptide repeat-containing protein OS=Actinidia chinensis var. chinensi... [more]
tr|A0A251R7L2|A0A251R7L2_PRUPE4.0e-5866.07Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_1G342600 PE=4 SV=1[more]
tr|A0A2I4GDJ2|A0A2I4GDJ2_9ROSI7.6e-5766.67putative pentatricopeptide repeat-containing protein At2g02150 OS=Juglans regia ... [more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
Vocabulary: INTERPRO
TermDefinition
IPR011990TPR-like_helical_dom_sf
IPR002885Pentatricopeptide_repeat
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0005515 protein binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg01341-RACarg01341-RAmRNA


InterPro
Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002885Pentatricopeptide repeatPFAMPF13041PPR_2coord: 475..523
e-value: 1.3E-14
score: 54.0
coord: 544..590
e-value: 1.3E-13
score: 50.8
coord: 194..242
e-value: 3.3E-18
score: 65.5
coord: 370..416
e-value: 4.9E-13
score: 48.9
coord: 264..313
e-value: 9.1E-20
score: 70.5
IPR002885Pentatricopeptide repeatTIGRFAMTIGR00756TIGR00756coord: 302..336
e-value: 4.4E-9
score: 34.0
coord: 512..546
e-value: 1.9E-9
score: 35.1
coord: 408..440
e-value: 2.9E-7
score: 28.2
coord: 163..195
e-value: 0.0024
score: 15.9
coord: 232..266
e-value: 6.3E-10
score: 36.6
coord: 618..649
e-value: 1.2E-7
score: 29.4
coord: 267..301
e-value: 3.5E-8
score: 31.1
coord: 443..475
e-value: 0.0016
score: 16.5
coord: 477..510
e-value: 4.8E-7
score: 27.5
coord: 653..682
e-value: 1.9E-4
score: 19.4
coord: 337..370
e-value: 8.1E-6
score: 23.7
coord: 372..405
e-value: 7.4E-10
score: 36.4
coord: 197..231
e-value: 1.3E-10
score: 38.7
coord: 548..580
e-value: 6.2E-8
score: 30.3
IPR002885Pentatricopeptide repeatPFAMPF01535PPRcoord: 618..647
e-value: 1.5E-7
score: 31.1
coord: 163..192
e-value: 0.31
score: 11.3
coord: 130..155
e-value: 0.083
score: 13.1
coord: 443..472
e-value: 0.002
score: 18.2
coord: 654..682
e-value: 2.9E-4
score: 20.8
IPR002885Pentatricopeptide repeatPFAMPF12854PPR_1coord: 331..362
e-value: 6.8E-9
score: 35.2
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 405..439
score: 11.356
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 440..474
score: 9.854
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 615..649
score: 13.011
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 580..614
score: 8.659
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 195..229
score: 13.724
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 335..369
score: 11.323
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 160..194
score: 8.659
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 125..159
score: 7.947
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 545..579
score: 12.364
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 230..264
score: 14.085
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 510..544
score: 12.068
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 265..299
score: 12.945
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 650..684
score: 9.679
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 475..509
score: 11.071
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 300..334
score: 13.088
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 370..404
score: 13.702
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3DG3DSA:1.25.40.10coord: 467..609
e-value: 5.2E-42
score: 146.3
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3DG3DSA:1.25.40.10coord: 31..184
e-value: 7.6E-12
score: 47.1
coord: 610..681
e-value: 5.5E-14
score: 54.1
coord: 185..257
e-value: 2.0E-24
score: 88.2
coord: 258..329
e-value: 1.6E-26
score: 95.0
coord: 330..397
e-value: 2.2E-21
score: 78.2
coord: 398..466
e-value: 2.7E-17
score: 64.9
NoneNo IPR availablePANTHERPTHR24015FAMILY NOT NAMEDcoord: 32..667
NoneNo IPR availablePANTHERPTHR24015:SF329SUBFAMILY NOT NAMEDcoord: 32..667
NoneNo IPR availableSUPERFAMILYSSF81901HCP-likecoord: 334..445
coord: 184..297
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