Carg17518 (gene) Silver-seed gourd

Overview
NameCarg17518
Typegene
OrganismCucurbita argyrosperma (Silver-seed gourd)
Descriptionzinc finger CCCH domain-containing protein 39-like
LocationCucurbita_argyrosperma_scaffold_084 : 606004 .. 607323 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGTTTCAATGATATTCGAGGCTCTGTTATACCGCCGCCTCTGCATCCTTATGGAGCCAATGGCGATGCCACTGGTTGCTGGTCTCAGTATCCTAGGAACGATCCATTTGATACACAATCGCAATTTGAACCACAGCAGCCTCCATTCAAAAGAGCTAGAAATTCTGAAGAAAACCTATCTAGAGTTCAAAATGGTCCAGTGAATAAAGGAATAAACAATATCTTCTTCAAGACAAGGATGTGTGCGAAATTCAAGCTTGGTTTGTGTAGGAATGGAGCGAATTGCAACTTTGCTCATGGTGCTGAAGACATGCGACAACCCCCACCAAATTGGCAAGAAATTGTGGGGATTCGTGAGGATGATCAATCAGTAAGTAACTGGAATGATGATCAGAAAATTATTCAGAAAATGAAGCTGTGTAGGAAGTTTTATAATGGGGAGGAATGCCCTTATGGAGATAGGTGCAATTTTCTTCATGAAGATCCTGCTAAATTTAGAGATGATTCTGGTAGGTTTAGGGAAAGTTCAGCTATAAGCATTGGAACTACTGTAACTCCATTGATGAATGGTAATGATTCTAGCTATTCTGAACCTAGCAGAGCTGTTTCTTGTTCTGCTTCTGCTTCTGATTCTCTTCGAGGTAATGGAAATGCATTCTGGAAGACGAAGTTATGCACTAAGTGGGAGGTTACTGGTCATTGCCCCTTTGGTGATAAGTGCCATTTTGCTCATGGCCAATCTGGTATTGATACCTCTCCTTTTCTCTTTCTCTGTAATGTGTAATACTGTCATAACATGTGGATTGGAATTCTTGATGAACTGAAAATCATGATATGCTTTGAACGATCTTCATAGTTAACACAACCATGTTCAAACACATTTGTTTCTTCTCGAGCATTCGAAAGTCGTTCCAAACAAACTCTTAATTTATTTAGTATCTTTGTCTTGGCGTCCTCTTTGAAGCGTTTGACATTGTGTGATTATACTACTTTGGGATGTTTTAATTTCCTCTTTGGAGCGTTTGACATTGTGTGATTATACTACTTCGGGATGTTGACTGTTCTTTATGGATCAGAGTTACAACTCTCACTTGGACGCGAGGGGGAAGTATCTAATCCTGCCCTCAACATTAATCCTGTAGTTGTGGCCATGGAAGCATCTCCGAGTTTGGCAGCGAGTGTCGCGACCTCTTCCCTACCAGAGGGTCAGGCGAAGCCGTGCTTGCTGAAATGGAAAGGACCCAAGAAGATAAATCGGATCTATGCCGATTGGCTTGATGATTTGCCTCTATCTCCAACCTCAGCCAGCAAATTGGAG

mRNA sequence

ATGAGTTTCAATGATATTCGAGGCTCTGTTATACCGCCGCCTCTGCATCCTTATGGAGCCAATGGCGATGCCACTGGTTGCTGGTCTCAGTATCCTAGGAACGATCCATTTGATACACAATCGCAATTTGAACCACAGCAGCCTCCATTCAAAAGAGCTAGAAATTCTGAAGAAAACCTATCTAGAGTTCAAAATGGTCCAGTGAATAAAGGAATAAACAATATCTTCTTCAAGACAAGGATGTGTGCGAAATTCAAGCTTGGTTTGTGTAGGAATGGAGCGAATTGCAACTTTGCTCATGGTGCTGAAGACATGCGACAACCCCCACCAAATTGGCAAGAAATTGTGGGGATTCGTGAGGATGATCAATCAGTAAGTAACTGGAATGATGATCAGAAAATTATTCAGAAAATGAAGCTGTGTAGGAAGTTTTATAATGGGGAGGAATGCCCTTATGGAGATAGGTGCAATTTTCTTCATGAAGATCCTGCTAAATTTAGAGATGATTCTGGTAGGTTTAGGGAAAGTTCAGCTATAAGCATTGGAACTACTGTAACTCCATTGATGAATGGTAATGATTCTAGCTATTCTGAACCTAGCAGAGCTGTTTCTTGTTCTGCTTCTGCTTCTGATTCTCTTCGAGGTAATGGAAATGCATTCTGGAAGACGAAGTTATGCACTAAGTGGGAGGTTACTGGTCATTGCCCCTTTGGTGATAAGTGCCATTTTGCTCATGGCCAATCTGAGTTACAACTCTCACTTGGACGCGAGGGGGAAGTATCTAATCCTGCCCTCAACATTAATCCTGTAGTTGTGGCCATGGAAGCATCTCCGAGTTTGGCAGCGAGTGTCGCGACCTCTTCCCTACCAGAGGGTCAGGCGAAGCCGTGCTTGCTGAAATGGAAAGGACCCAAGAAGATAAATCGGATCTATGCCGATTGGCTTGATGATTTGCCTCTATCTCCAACCTCAGCCAGCAAATTGGAG

Coding sequence (CDS)

ATGAGTTTCAATGATATTCGAGGCTCTGTTATACCGCCGCCTCTGCATCCTTATGGAGCCAATGGCGATGCCACTGGTTGCTGGTCTCAGTATCCTAGGAACGATCCATTTGATACACAATCGCAATTTGAACCACAGCAGCCTCCATTCAAAAGAGCTAGAAATTCTGAAGAAAACCTATCTAGAGTTCAAAATGGTCCAGTGAATAAAGGAATAAACAATATCTTCTTCAAGACAAGGATGTGTGCGAAATTCAAGCTTGGTTTGTGTAGGAATGGAGCGAATTGCAACTTTGCTCATGGTGCTGAAGACATGCGACAACCCCCACCAAATTGGCAAGAAATTGTGGGGATTCGTGAGGATGATCAATCAGTAAGTAACTGGAATGATGATCAGAAAATTATTCAGAAAATGAAGCTGTGTAGGAAGTTTTATAATGGGGAGGAATGCCCTTATGGAGATAGGTGCAATTTTCTTCATGAAGATCCTGCTAAATTTAGAGATGATTCTGGTAGGTTTAGGGAAAGTTCAGCTATAAGCATTGGAACTACTGTAACTCCATTGATGAATGGTAATGATTCTAGCTATTCTGAACCTAGCAGAGCTGTTTCTTGTTCTGCTTCTGCTTCTGATTCTCTTCGAGGTAATGGAAATGCATTCTGGAAGACGAAGTTATGCACTAAGTGGGAGGTTACTGGTCATTGCCCCTTTGGTGATAAGTGCCATTTTGCTCATGGCCAATCTGAGTTACAACTCTCACTTGGACGCGAGGGGGAAGTATCTAATCCTGCCCTCAACATTAATCCTGTAGTTGTGGCCATGGAAGCATCTCCGAGTTTGGCAGCGAGTGTCGCGACCTCTTCCCTACCAGAGGGTCAGGCGAAGCCGTGCTTGCTGAAATGGAAAGGACCCAAGAAGATAAATCGGATCTATGCCGATTGGCTTGATGATTTGCCTCTATCTCCAACCTCAGCCAGCAAATTGGAG

Protein sequence

MSFNDIRGSVIPPPLHPYGANGDATGCWSQYPRNDPFDTQSQFEPQQPPFKRARNSEENLSRVQNGPVNKGINNIFFKTRMCAKFKLGLCRNGANCNFAHGAEDMRQPPPNWQEIVGIREDDQSVSNWNDDQKIIQKMKLCRKFYNGEECPYGDRCNFLHEDPAKFRDDSGRFRESSAISIGTTVTPLMNGNDSSYSEPSRAVSCSASASDSLRGNGNAFWKTKLCTKWEVTGHCPFGDKCHFAHGQSELQLSLGREGEVSNPALNINPVVVAMEASPSLAASVATSSLPEGQAKPCLLKWKGPKKINRIYADWLDDLPLSPTSASKLE
Homology
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BLAST of Carg17518 vs. NCBI nr
Match: XP_022937467.1 (zinc finger CCCH domain-containing protein 39-like [Cucurbita moschata])

HSP 1 Score: 677.2 bits (1746), Expect = 2.9e-191
Identity = 324/329 (98.48%), Postives = 325/329 (98.78%), Query Frame = 0 

Query: 1   MSFNDIRGSVIPPPLHPYGANGDATGCWSQYPRNDPFDTQSQFEPQQPPFKRARNSEENL 60
           MSFNDIRGSVIPPPLHPYGA+ DATGCWSQYPRND FDTQSQFEPQ PPFKRARNSEENL
Sbjct: 1   MSFNDIRGSVIPPPLHPYGAS-DATGCWSQYPRNDLFDTQSQFEPQLPPFKRARNSEENL 60

Query: 61  SRVQNGPVNKGINNIFFKTRMCAKFKLGLCRNGANCNFAHGAEDMRQPPPNWQEIVGIRE 120
           SRVQNGPVNKGINNIFFKTRMCAKFKLGLCRNGANCNFAHGAEDMRQPPPNWQEIVGIRE
Sbjct: 61  SRVQNGPVNKGINNIFFKTRMCAKFKLGLCRNGANCNFAHGAEDMRQPPPNWQEIVGIRE 120

Query: 121 DDQSVSNWNDDQKIIQKMKLCRKFYNGEECPYGDRCNFLHEDPAKFRDDSGRFRESSAIS 180
           DDQSVSNWNDDQKIIQKMKLCRKFYNGEECPYGDRCNFLHEDPAKFRDDSGRFRESSAIS
Sbjct: 121 DDQSVSNWNDDQKIIQKMKLCRKFYNGEECPYGDRCNFLHEDPAKFRDDSGRFRESSAIS 180

Query: 181 IGTTVTPLMNGNDSSYSEPSRAVSCSASASDSLRGNGNAFWKTKLCTKWEVTGHCPFGDK 240
           IGTTVTPLMNGNDSSYSEPSRAVSCSASASDSLRGNGNAFWKTKLCTKWEVTGHCPFGDK
Sbjct: 181 IGTTVTPLMNGNDSSYSEPSRAVSCSASASDSLRGNGNAFWKTKLCTKWEVTGHCPFGDK 240

Query: 241 CHFAHGQSELQLSLGREGEVSNPALNINPVVVAMEASPSLAASVATSSLPEGQAKPCLLK 300
           CHFAHGQSELQLSLGREGEVSNPALNINPVVVAMEASPSLAASVATS LPEGQAKPCLLK
Sbjct: 241 CHFAHGQSELQLSLGREGEVSNPALNINPVVVAMEASPSLAASVATSPLPEGQAKPCLLK 300

Query: 301 WKGPKKINRIYADWLDDLPLSPTSASKLE 330
           WKGPKKINRIYADWLDDLPLSPTSASKLE
Sbjct: 301 WKGPKKINRIYADWLDDLPLSPTSASKLE 328

[Close]
BLAST of Carg17518 vs. NCBI nr
Match: XP_022965837.1 (zinc finger CCCH domain-containing protein 39-like [Cucurbita maxima])

HSP 1 Score: 669.1 bits (1725), Expect = 7.8e-189
Identity = 318/329 (96.66%), Postives = 322/329 (97.87%), Query Frame = 0 

Query: 1   MSFNDIRGSVIPPPLHPYGANGDATGCWSQYPRNDPFDTQSQFEPQQPPFKRARNSEENL 60
           M+FNDIRGSVIPPPLHPYGANGDATGCWSQYPRND FDTQSQFEPQ PPFKRARNSEEN 
Sbjct: 1   MNFNDIRGSVIPPPLHPYGANGDATGCWSQYPRNDLFDTQSQFEPQLPPFKRARNSEENQ 60

Query: 61  SRVQNGPVNKGINNIFFKTRMCAKFKLGLCRNGANCNFAHGAEDMRQPPPNWQEIVGIRE 120
           SRVQNGPVNKGINNIFFKTRMCAKFKLGLCRNGANCNFAHGAEDMRQPPPNWQEIVGIRE
Sbjct: 61  SRVQNGPVNKGINNIFFKTRMCAKFKLGLCRNGANCNFAHGAEDMRQPPPNWQEIVGIRE 120

Query: 121 DDQSVSNWNDDQKIIQKMKLCRKFYNGEECPYGDRCNFLHEDPAKFRDDSGRFRESSAIS 180
           DDQSVSNWNDDQKIIQKMKLCRKFYNGEECPYGDRCNFLHEDPAKFRDDSGRFRESSAIS
Sbjct: 121 DDQSVSNWNDDQKIIQKMKLCRKFYNGEECPYGDRCNFLHEDPAKFRDDSGRFRESSAIS 180

Query: 181 IGTTVTPLMNGNDSSYSEPSRAVSCSASASDSLRGNGNAFWKTKLCTKWEVTGHCPFGDK 240
           IGTTVTPLMNGNDSSYSEPSRAVSC   ASDSLRGNGNAFWKTKLCTKWEVTGHCPFGDK
Sbjct: 181 IGTTVTPLMNGNDSSYSEPSRAVSC--PASDSLRGNGNAFWKTKLCTKWEVTGHCPFGDK 240

Query: 241 CHFAHGQSELQLSLGREGEVSNPALNINPVVVAMEASPSLAASVATSSLPEGQAKPCLLK 300
           CHFAHGQSELQLSLGREG+VSNPALNINP+VVAMEASPSLAASVATS LPEGQAKPCLLK
Sbjct: 241 CHFAHGQSELQLSLGREGQVSNPALNINPLVVAMEASPSLAASVATSPLPEGQAKPCLLK 300

Query: 301 WKGPKKINRIYADWLDDLPLSPTSASKLE 330
           WKGPKKINRIYADWLDDLPLSPTSASKL+
Sbjct: 301 WKGPKKINRIYADWLDDLPLSPTSASKLD 327

[Close]
BLAST of Carg17518 vs. NCBI nr
Match: XP_023536864.1 (zinc finger CCCH domain-containing protein 39-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 665.6 bits (1716), Expect = 8.6e-188
Identity = 316/329 (96.05%), Postives = 322/329 (97.87%), Query Frame = 0 

Query: 1   MSFNDIRGSVIPPPLHPYGANGDATGCWSQYPRNDPFDTQSQFEPQQPPFKRARNSEENL 60
           MSFNDIRGSVIPPPLHPYGANGDATGCWSQYPRND FDTQSQFEPQ PPFKRARNSEEN 
Sbjct: 1   MSFNDIRGSVIPPPLHPYGANGDATGCWSQYPRNDLFDTQSQFEPQLPPFKRARNSEENQ 60

Query: 61  SRVQNGPVNKGINNIFFKTRMCAKFKLGLCRNGANCNFAHGAEDMRQPPPNWQEIVGIRE 120
           SRVQNGP+NKGINNIFFKTRMCAKFKLGLCRNGANCNFAHGAEDMRQPPPNWQEIVGIRE
Sbjct: 61  SRVQNGPMNKGINNIFFKTRMCAKFKLGLCRNGANCNFAHGAEDMRQPPPNWQEIVGIRE 120

Query: 121 DDQSVSNWNDDQKIIQKMKLCRKFYNGEECPYGDRCNFLHEDPAKFRDDSGRFRESSAIS 180
           DDQSVSNWNDDQKIIQKMKLCRKFYNGEECPYGDRCNFLHEDPAKFRDDSGRFRESSAIS
Sbjct: 121 DDQSVSNWNDDQKIIQKMKLCRKFYNGEECPYGDRCNFLHEDPAKFRDDSGRFRESSAIS 180

Query: 181 IGTTVTPLMNGNDSSYSEPSRAVSCSASASDSLRGNGNAFWKTKLCTKWEVTGHCPFGDK 240
           IGTTVTPL NGNDSSYSEPSRAVSC  SASDSLRGNGNAFWKTKLCTKWEVTGHCPFGDK
Sbjct: 181 IGTTVTPLTNGNDSSYSEPSRAVSC--SASDSLRGNGNAFWKTKLCTKWEVTGHCPFGDK 240

Query: 241 CHFAHGQSELQLSLGREGEVSNPALNINPVVVAMEASPSLAASVATSSLPEGQAKPCLLK 300
           CHFAHG+SELQLSLGREGEVSNPALNINP+VVAMEASP+LAASVATS LPEGQAKPCLLK
Sbjct: 241 CHFAHGRSELQLSLGREGEVSNPALNINPLVVAMEASPNLAASVATSPLPEGQAKPCLLK 300

Query: 301 WKGPKKINRIYADWLDDLPLSPTSASKLE 330
           WKGPKKINRIYADWL+DLPLSPTSA+KLE
Sbjct: 301 WKGPKKINRIYADWLEDLPLSPTSANKLE 327

[Close]
BLAST of Carg17518 vs. NCBI nr
Match: XP_008457806.1 (PREDICTED: zinc finger CCCH domain-containing protein 39-like [Cucumis melo])

HSP 1 Score: 581.6 bits (1498), Expect = 1.6e-162
Identity = 283/348 (81.32%), Postives = 302/348 (86.78%), Query Frame = 0 

Query: 1   MSFNDIRGSVIPPPLHPYGANGDATGCWSQYPRNDPFDTQSQFEPQQPPFKRARNSEENL 60
           MSFND+RGSVIPPPLH YG+NGDA+GCWSQ+PRNDPFD QSQFE QQPP+KRARNSEEN 
Sbjct: 1   MSFNDMRGSVIPPPLHSYGSNGDASGCWSQFPRNDPFDPQSQFEVQQPPYKRARNSEENP 60

Query: 61  S--------------RVQNGPVNKGINNIFFKTRMCAKFKLGLCRNGANCNFAHGAEDMR 120
           S                 N PVNKGI+NIFFKTRMCAKFKLGLCRNGA+CNFAHG EDMR
Sbjct: 61  SSPISYSNPSLNSRGHPPNAPVNKGISNIFFKTRMCAKFKLGLCRNGASCNFAHGVEDMR 120

Query: 121 QPPPNWQEIVGIREDDQSVSNWNDDQKIIQKMKLCRKFYNGEECPYGDRCNFLHEDPAKF 180
           QPPPNWQEIVGI+EDDQSV+NWNDDQKIIQKMKLCRKFYNGEECPYGDRCNFLHEDPAKF
Sbjct: 121 QPPPNWQEIVGIKEDDQSVNNWNDDQKIIQKMKLCRKFYNGEECPYGDRCNFLHEDPAKF 180

Query: 181 RDDSGRFRESSAISIGTTVTPLMNGND-SSYSEPSRAVSCSASASDSLRGNGN---AFWK 240
           RDDSGRFRESSAISIGTT TPLMNG+D SSY EPSRA SC  S SD+LR NGN   +FWK
Sbjct: 181 RDDSGRFRESSAISIGTTGTPLMNGSDSSSYIEPSRATSC--SVSDALRANGNVRPSFWK 240

Query: 241 TKLCTKWEVTGHCPFGDKCHFAHGQSELQLSLGREGEVSNPALNINPVVVAMEASPSLAA 300
           TKLCTKWE+TGHCPFGDKCHFAHGQSELQL +GREGEVS  ALN+ P++VAMEAS SL  
Sbjct: 241 TKLCTKWEITGHCPFGDKCHFAHGQSELQLYIGREGEVSTAALNVKPLIVAMEASSSLTT 300

Query: 301 SVATSS-LPEGQAKPCLLKWKGPKKINRIYADWLDDLPLSPTSASKLE 330
           SV  SS LPEGQAKP LLKWKGPKKINRIYADWLDDLPLSP+S SK+E
Sbjct: 301 SVLPSSALPEGQAKPSLLKWKGPKKINRIYADWLDDLPLSPSSTSKME 346

[Close]
BLAST of Carg17518 vs. NCBI nr
Match: XP_004139420.1 (PREDICTED: zinc finger CCCH domain-containing protein 39-like [Cucumis sativus] >KGN60661.1 hypothetical protein Csa_2G006070 [Cucumis sativus])

HSP 1 Score: 577.4 bits (1487), Expect = 3.1e-161
Identity = 280/348 (80.46%), Postives = 300/348 (86.21%), Query Frame = 0 

Query: 1   MSFNDIRGSVIPPPLHPYGANGDATGCWSQYPRNDPFDTQSQFEPQQPPFKRARNSEENL 60
           MSFND+R SVIPPPLH YG+NGDA+GCWSQ+PRNDPFD QSQFE QQPP+KRARNSEEN 
Sbjct: 1   MSFNDMRASVIPPPLHSYGSNGDASGCWSQFPRNDPFDPQSQFEVQQPPYKRARNSEENP 60

Query: 61  S--------------RVQNGPVNKGINNIFFKTRMCAKFKLGLCRNGANCNFAHGAEDMR 120
           S              +  N PVNKGI+NIFFKTRMCAKFKLGLCRNGA+CNFAHG EDMR
Sbjct: 61  SSPISYSNPSLNSRGQPPNAPVNKGISNIFFKTRMCAKFKLGLCRNGASCNFAHGVEDMR 120

Query: 121 QPPPNWQEIVGIREDDQSVSNWNDDQKIIQKMKLCRKFYNGEECPYGDRCNFLHEDPAKF 180
           QPPPNWQEIVGI+EDDQSV+NWNDDQKIIQKMKLCRKFYNGEECPYGDRCNFLHEDPAKF
Sbjct: 121 QPPPNWQEIVGIKEDDQSVNNWNDDQKIIQKMKLCRKFYNGEECPYGDRCNFLHEDPAKF 180

Query: 181 RDDSGRFRESSAISIGTTVTPLMNGND-SSYSEPSRAVSCSASASDSLRGNGN---AFWK 240
           RDDSGRFRESSAISIGTT TPLMNGND SSY EPSR  SC  S SD+LR NGN   +FWK
Sbjct: 181 RDDSGRFRESSAISIGTTGTPLMNGNDSSSYIEPSRVTSC--SVSDALRANGNVRPSFWK 240

Query: 241 TKLCTKWEVTGHCPFGDKCHFAHGQSELQLSLGREGEVSNPALNINPVVVAMEASPSLAA 300
           TKLCTKWE+TGHCPFGDKCHFAHGQSELQL +GREGEVS  ALN+ P++VAMEAS SL  
Sbjct: 241 TKLCTKWEITGHCPFGDKCHFAHGQSELQLYIGREGEVSTAALNVKPLIVAMEASSSLTT 300

Query: 301 SVATSS-LPEGQAKPCLLKWKGPKKINRIYADWLDDLPLSPTSASKLE 330
           +V  SS LPEGQ KP LLKWKGPKKINRIYADWLDDLPLSP+S SK+E
Sbjct: 301 NVVPSSALPEGQEKPSLLKWKGPKKINRIYADWLDDLPLSPSSTSKME 346

[Close]
BLAST of Carg17518 vs. TAIR10
Match: AT3G19360.1 (Zinc finger (CCCH-type) family protein)

HSP 1 Score: 287.3 bits (734), Expect = 1.2e-77
Identity = 164/341 (48.09%), Postives = 200/341 (58.65%), Query Frame = 0 

Query: 38  DTQSQFEPQ---QPPFKRARNSEENLSRVQNG------------------PVNKGINNIF 97
           ++QSQ +P    QP  KR R  ++NL    +                   PVNKG  NIF
Sbjct: 45  ESQSQSQPSQQLQPALKRPRLVDDNLFNPASSFPQPSSSNPWMVPSLNPPPVNKGTANIF 104

Query: 98  FKTRMCAKFKLGLCRNGANCNFAHGAEDMRQPPPNWQEIVG---------------IRED 157
           +KTRMCAKF+ G CRNG  CNFAHG ED+RQPP NWQEIVG                   
Sbjct: 105 YKTRMCAKFRAGTCRNGELCNFAHGIEDLRQPPSNWQEIVGPPPAGXXXXXXXXXXXXXX 164

Query: 158 DQSV-----SNWNDDQKIIQKMKLCRKFYNGEECPYGDRCNFLHEDPAKFRDDSGRFRES 217
             S+     +NW DDQKII +MKLCRKF  GEECPYGDRCNF+HED +KFR+DSG+ RES
Sbjct: 165 XXSLAPVVNNNWEDDQKIILRMKLCRKFCFGEECPYGDRCNFIHEDLSKFREDSGKLRES 224

Query: 218 SAISIGTTVTPLMNGNDSSYSEPSRAVSCSASASDSLRG-NGNAFWKTKLCTKWEVTGHC 277
           S IS+G T     +   S+  E +R  S    A  +  G     +WKT+LC K+++TG C
Sbjct: 225 SVISVGATAADQPSDTASNLIEVNRQGSIPVPAPMNNGGVVKTVYWKTRLCMKFDITGQC 284

Query: 278 PFGDKCHFAHGQSELQLSLGR-EGEVSNPALNIN--PVVVAMEA---SPSLAASVATSSL 330
           PFGDKCHFAHGQ+EL  S+GR EGE  N   ++N   VV A EA    P    +  +S L
Sbjct: 285 PFGDKCHFAHGQAELHNSVGRVEGEAMNAVASVNKQAVVPANEAFAMKPITQVTADSSGL 344

[Close]
BLAST of Carg17518 vs. TAIR10
Match: AT1G32360.1 (Zinc finger (CCCH-type) family protein)

HSP 1 Score: 149.4 bits (376), Expect = 3.8e-36
Identity = 90/299 (30.10%), Postives = 128/299 (42.81%), Query Frame = 0 

Query: 70  KGINNIFFKTRMCAKFKLGLCRNGANCNFAHGAEDMRQPPPNWQEIVGIREDDQSVSNWN 129
           K I  +FFKT++C KF+ G C    NCNFAH  E++R+PPPNWQEIV   E+++S     
Sbjct: 85  KAIGKMFFKTKLCCKFRAGTCPYITNCNFAHTVEELRRPPPNWQEIVAAHEEERSGGMGT 144

Query: 130 DDQKIIQ----------------------KMKLCRKFYNGEECPYGDRCNFLHEDPAKFR 189
               +++                      K + C+KFY  E CPYG+ C FLH++ ++ R
Sbjct: 145 PTVSVVEIPREEFQIPSLVSSTAESGRSFKGRHCKKFYTEEGCPYGESCTFLHDEASRNR 204

Query: 190 DDSGRFRESSAISIGTTVTPLMNGNDSSYSEPSRAVSCSASASDSLRGN---GNAFWKTK 249
                                                                 + WKT+
Sbjct: 205 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQILKPSNWKTR 264

Query: 250 LCTKWEVTGHCPFGDKCHFAHGQSELQL-------SLGREGEVSNPALN----------- 309
           +C KWE+TG+CPFG KCHFAHG +EL           G++G   NP              
Sbjct: 265 ICNKWEITGYCPFGAKCHFAHGAAELHRFGGGLVEEEGKDGVSPNPDTKQTVQNPKGLSD 324

Query: 310 ----INPVV---VAMEASPSLAASVATSSLPEGQAKPCLLKWKGPKKINRIYADWLDDL 319
               ++P V           +A   A+S++ +        KWKGP KI+RIY DW+DD+
Sbjct: 325 TTTLLSPGVPHNADASYHTGVALQRASSAVTQKPGIRTHQKWKGPAKISRIYGDWIDDI 383

[Close]
BLAST of Carg17518 vs. TAIR10
Match: AT2G35430.1 (Zinc finger C-x8-C-x5-C-x3-H type family protein)

HSP 1 Score: 100.9 bits (250), Expect = 1.5e-21
Identity = 88/331 (26.59%), Postives = 128/331 (38.67%), Query Frame = 0 

Query: 12  PPPLHPYGANGDATGCWSQYPRNDPFDT--QSQFEPQQPPFKRARNSEENLSRVQNGPVN 71
           PPP + +  +GD+    S +   D +        +  + P K+ R+S            +
Sbjct: 20  PPPENCFPNSGDS----SVWATEDDYSRVWAINSDGAESPSKKTRSSS-----------S 79

Query: 72  KGINNIFFKTRMCAKFKLGLC-RNGANCNFAHGAEDMRQP---PPNWQEIVGIREDDQSV 131
             I   FFKT++C KF+ G C  + ++C+FAH AE++R P     NWQE V         
Sbjct: 80  SEIGKSFFKTKLCFKFRAGTCPYSASSCHFAHSAEELRLPXXXXXNWQETV--------- 139

Query: 132 SNWNDDQKIIQKMKLCRKFYNGEECPYGDRCNFLHEDPAKFRDDSGRFRESSAISIGTTV 191
                                                      ++ R RES A+S+G   
Sbjct: 140 ------------------------------------------TEASRNRESFAVSLGP-- 199

Query: 192 TPLMNGNDSSYSEPSRAVSCSASASDSLRGNGNAFWKTKLCTKWEVTGHCPFGDKCHFAH 251
                GN                 + +L+      WKT++C KW+ TG+CPFG  CHFAH
Sbjct: 200 ----RGN----------------VAQTLKSPN---WKTRICNKWQTTGYCPFGSHCHFAH 251

Query: 252 GQSELQ------------------LSLGREGEVSNPALNINPVVVAMEASPSLAASVATS 311
           G SEL                   L   + G+V      ++P V       S   S A +
Sbjct: 260 GPSELHTFGGGLVEGECKIGTSATLDTKQRGQVDTVTSLVSPGV------SSQRTSSAVT 251

Query: 312 SLPEGQAKPCLLKWKGPKKINRIYADWLDDL 319
             P G       KWKGP KI+R+Y DW+DD+
Sbjct: 320 QKPNGVRTQ--RKWKGPDKISRVYGDWIDDI 251

[Close]
BLAST of Carg17518 vs. TAIR10
Match: AT1G68200.1 (Zinc finger C-x8-C-x5-C-x3-H type family protein)

HSP 1 Score: 51.6 bits (122), Expect = 1.1e-06
Identity = 19/30 (63.33%), Postives = 23/30 (76.67%), Query Frame = 0 

Query: 222 KTKLCTKWEVTGHCPFGDKCHFAHGQSELQ 252
           KT+LC KW+ TG CP+GD C FAHG  EL+
Sbjct: 224 KTELCNKWQETGTCPYGDHCQFAHGIKELR 253

[Close]
BLAST of Carg17518 vs. TAIR10
Match: AT1G66810.1 (Zinc finger C-x8-C-x5-C-x3-H type family protein)

HSP 1 Score: 48.1 bits (113), Expect = 1.2e-05
Identity = 18/30 (60.00%), Postives = 22/30 (73.33%), Query Frame = 0 

Query: 222 KTKLCTKWEVTGHCPFGDKCHFAHGQSELQ 252
           KT+LC KW+ TG C +GD C FAHG  EL+
Sbjct: 234 KTELCNKWQETGACCYGDNCQFAHGIDELR 263

[Close]
BLAST of Carg17518 vs. Swiss-Prot
Match: sp|Q9LT81|C3H39_ARATH (Zinc finger CCCH domain-containing protein 39 OS=Arabidopsis thaliana OX=3702 GN=At3g19360 PE=2 SV=1)

HSP 1 Score: 287.3 bits (734), Expect = 2.1e-76
Identity = 164/341 (48.09%), Postives = 200/341 (58.65%), Query Frame = 0 

Query: 38  DTQSQFEPQ---QPPFKRARNSEENLSRVQNG------------------PVNKGINNIF 97
           ++QSQ +P    QP  KR R  ++NL    +                   PVNKG  NIF
Sbjct: 45  ESQSQSQPSQQLQPALKRPRLVDDNLFNPASSFPQPSSSNPWMVPSLNPPPVNKGTANIF 104

Query: 98  FKTRMCAKFKLGLCRNGANCNFAHGAEDMRQPPPNWQEIVG---------------IRED 157
           +KTRMCAKF+ G CRNG  CNFAHG ED+RQPP NWQEIVG                   
Sbjct: 105 YKTRMCAKFRAGTCRNGELCNFAHGIEDLRQPPSNWQEIVGPPPAGXXXXXXXXXXXXXX 164

Query: 158 DQSV-----SNWNDDQKIIQKMKLCRKFYNGEECPYGDRCNFLHEDPAKFRDDSGRFRES 217
             S+     +NW DDQKII +MKLCRKF  GEECPYGDRCNF+HED +KFR+DSG+ RES
Sbjct: 165 XXSLAPVVNNNWEDDQKIILRMKLCRKFCFGEECPYGDRCNFIHEDLSKFREDSGKLRES 224

Query: 218 SAISIGTTVTPLMNGNDSSYSEPSRAVSCSASASDSLRG-NGNAFWKTKLCTKWEVTGHC 277
           S IS+G T     +   S+  E +R  S    A  +  G     +WKT+LC K+++TG C
Sbjct: 225 SVISVGATAADQPSDTASNLIEVNRQGSIPVPAPMNNGGVVKTVYWKTRLCMKFDITGQC 284

Query: 278 PFGDKCHFAHGQSELQLSLGR-EGEVSNPALNIN--PVVVAMEA---SPSLAASVATSSL 330
           PFGDKCHFAHGQ+EL  S+GR EGE  N   ++N   VV A EA    P    +  +S L
Sbjct: 285 PFGDKCHFAHGQAELHNSVGRVEGEAMNAVASVNKQAVVPANEAFAMKPITQVTADSSGL 344

[Close]
BLAST of Carg17518 vs. Swiss-Prot
Match: sp|Q84UQ3|C3H56_ORYSJ (Zinc finger CCCH domain-containing protein 56 OS=Oryza sativa subsp. japonica OX=39947 GN=Os08g0159800 PE=4 SV=1)

HSP 1 Score: 160.6 bits (405), Expect = 2.9e-38
Identity = 94/295 (31.86%), Postives = 129/295 (43.73%), Query Frame = 0 

Query: 69  NKGINNIFFKTRMCAKFKLGLCRNGANCNFAHGAEDMRQPPPNWQEIVGIREDDQSVSNW 128
           ++ I  +FFKT++C KF+ G C    NCNFAHG E++R+PPPNWQEIV   E+       
Sbjct: 80  SRAIGKMFFKTKLCCKFRAGTCPYVTNCNFAHGMEELRKPPPNWQEIVAAHEEATEAREE 139

Query: 129 ND-----------------------DQKIIQKMKLCRKFYNGEECPYGDRCNFLHEDPAK 188
           +                              K + C+KFY  E CPYGD C FLH     
Sbjct: 140 HQIPIMTSSGPTAXXXXXXXXXXXXXXXXAYKGRHCKKFYTDEGCPYGDACTFLH----- 199

Query: 189 FRDDSGRFRESSAISIGTTVTPLMNGNDSSYSEPSRAVSCSASASDSLRGNGNAFWKTKL 248
             D+  + RES                                    ++   N  WKT++
Sbjct: 200 --DEQSKARESVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPMQKPSN--WKTRI 259

Query: 249 CTKWEVTGHCPFGDKCHFAHGQSELQLSLGREGEVSNPALNINP---VVVAMEASPSLAA 308
           C KWE+TG+CPFG KCHFAHG +EL    G   ++ +      P     V    +P+  A
Sbjct: 260 CNKWEMTGYCPFGSKCHFAHGAAELHKYGGGLVDIDSRDAAATPDSKQAVVSAKAPAETA 319

Query: 309 SVATSSLP--------------------EGQAKPCLLKWKGPKKINRIYADWLDD 318
           + +T+ LP                     GQ +  + KWKGP KI+RIY DW+D+
Sbjct: 320 AASTTVLPHADVYHLGVQAQRSTIAGQRSGQVQRPIQKWKGPDKISRIYGDWIDE 365

[Close]
BLAST of Carg17518 vs. Swiss-Prot
Match: sp|Q9LQM3|C3H12_ARATH (Zinc finger CCCH domain-containing protein 12 OS=Arabidopsis thaliana OX=3702 GN=At1g32360 PE=2 SV=1)

HSP 1 Score: 149.4 bits (376), Expect = 6.8e-35
Identity = 90/299 (30.10%), Postives = 128/299 (42.81%), Query Frame = 0 

Query: 70  KGINNIFFKTRMCAKFKLGLCRNGANCNFAHGAEDMRQPPPNWQEIVGIREDDQSVSNWN 129
           K I  +FFKT++C KF+ G C    NCNFAH  E++R+PPPNWQEIV   E+++S     
Sbjct: 85  KAIGKMFFKTKLCCKFRAGTCPYITNCNFAHTVEELRRPPPNWQEIVAAHEEERSGGMGT 144

Query: 130 DDQKIIQ----------------------KMKLCRKFYNGEECPYGDRCNFLHEDPAKFR 189
               +++                      K + C+KFY  E CPYG+ C FLH++ ++ R
Sbjct: 145 PTVSVVEIPREEFQIPSLVSSTAESGRSFKGRHCKKFYTEEGCPYGESCTFLHDEASRNR 204

Query: 190 DDSGRFRESSAISIGTTVTPLMNGNDSSYSEPSRAVSCSASASDSLRGN---GNAFWKTK 249
                                                                 + WKT+
Sbjct: 205 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQILKPSNWKTR 264

Query: 250 LCTKWEVTGHCPFGDKCHFAHGQSELQL-------SLGREGEVSNPALN----------- 309
           +C KWE+TG+CPFG KCHFAHG +EL           G++G   NP              
Sbjct: 265 ICNKWEITGYCPFGAKCHFAHGAAELHRFGGGLVEEEGKDGVSPNPDTKQTVQNPKGLSD 324

Query: 310 ----INPVV---VAMEASPSLAASVATSSLPEGQAKPCLLKWKGPKKINRIYADWLDDL 319
               ++P V           +A   A+S++ +        KWKGP KI+RIY DW+DD+
Sbjct: 325 TTTLLSPGVPHNADASYHTGVALQRASSAVTQKPGIRTHQKWKGPAKISRIYGDWIDDI 383

[Close]
BLAST of Carg17518 vs. Swiss-Prot
Match: sp|Q5PP65|C3H28_ARATH (Zinc finger CCCH domain-containing protein 28 OS=Arabidopsis thaliana OX=3702 GN=At2g35430 PE=1 SV=1)

HSP 1 Score: 100.9 bits (250), Expect = 2.8e-20
Identity = 88/331 (26.59%), Postives = 128/331 (38.67%), Query Frame = 0 

Query: 12  PPPLHPYGANGDATGCWSQYPRNDPFDT--QSQFEPQQPPFKRARNSEENLSRVQNGPVN 71
           PPP + +  +GD+    S +   D +        +  + P K+ R+S            +
Sbjct: 20  PPPENCFPNSGDS----SVWATEDDYSRVWAINSDGAESPSKKTRSSS-----------S 79

Query: 72  KGINNIFFKTRMCAKFKLGLC-RNGANCNFAHGAEDMRQP---PPNWQEIVGIREDDQSV 131
             I   FFKT++C KF+ G C  + ++C+FAH AE++R P     NWQE V         
Sbjct: 80  SEIGKSFFKTKLCFKFRAGTCPYSASSCHFAHSAEELRLPXXXXXNWQETV--------- 139

Query: 132 SNWNDDQKIIQKMKLCRKFYNGEECPYGDRCNFLHEDPAKFRDDSGRFRESSAISIGTTV 191
                                                      ++ R RES A+S+G   
Sbjct: 140 ------------------------------------------TEASRNRESFAVSLGP-- 199

Query: 192 TPLMNGNDSSYSEPSRAVSCSASASDSLRGNGNAFWKTKLCTKWEVTGHCPFGDKCHFAH 251
                GN                 + +L+      WKT++C KW+ TG+CPFG  CHFAH
Sbjct: 200 ----RGN----------------VAQTLKSPN---WKTRICNKWQTTGYCPFGSHCHFAH 251

Query: 252 GQSELQ------------------LSLGREGEVSNPALNINPVVVAMEASPSLAASVATS 311
           G SEL                   L   + G+V      ++P V       S   S A +
Sbjct: 260 GPSELHTFGGGLVEGECKIGTSATLDTKQRGQVDTVTSLVSPGV------SSQRTSSAVT 251

Query: 312 SLPEGQAKPCLLKWKGPKKINRIYADWLDDL 319
             P G       KWKGP KI+R+Y DW+DD+
Sbjct: 320 QKPNGVRTQ--RKWKGPDKISRVYGDWIDDI 251

[Close]
BLAST of Carg17518 vs. Swiss-Prot
Match: sp|Q7XPK1|C3H31_ORYSJ (Zinc finger CCCH domain-containing protein 31 OS=Oryza sativa subsp. japonica OX=39947 GN=Os04g0665700 PE=2 SV=1)

HSP 1 Score: 68.6 bits (166), Expect = 1.5e-10
Identity = 37/114 (32.46%), Postives = 56/114 (49.12%), Query Frame = 0 

Query: 137 KMKLCRKFYNGEECPYGDRCNFLHEDPAKFRDDSGRFRESSAISIGTTVTPLMNGNDSSY 196
           K+K C KF++   CP+G+ C+F H  P  ++                 V   +N  + + 
Sbjct: 39  KLKPCTKFFSTIGCPFGEGCHFSHFVPGGYQ----------------AVAKTLNLGNPAV 98

Query: 197 SEPSRAVSCSASASDSLRGNGNAFWKTKLCTKWEVTGHCPFGDKCHFAHGQSEL 251
             P+RA    A+  +S   +     KT++CTK+     C FGDKCHFAHG+ EL
Sbjct: 99  PAPARAPMDHAAGGNSHPASSG---KTRMCTKYNTAEGCKFGDKCHFAHGEREL 133

[Close]
BLAST of Carg17518 vs. TrEMBL
Match: tr|A0A1S3C7N3|A0A1S3C7N3_CUCME (zinc finger CCCH domain-containing protein 39-like OS=Cucumis melo OX=3656 GN=LOC103497405 PE=4 SV=1)

HSP 1 Score: 581.6 bits (1498), Expect = 1.1e-162
Identity = 283/348 (81.32%), Postives = 302/348 (86.78%), Query Frame = 0 

Query: 1   MSFNDIRGSVIPPPLHPYGANGDATGCWSQYPRNDPFDTQSQFEPQQPPFKRARNSEENL 60
           MSFND+RGSVIPPPLH YG+NGDA+GCWSQ+PRNDPFD QSQFE QQPP+KRARNSEEN 
Sbjct: 1   MSFNDMRGSVIPPPLHSYGSNGDASGCWSQFPRNDPFDPQSQFEVQQPPYKRARNSEENP 60

Query: 61  S--------------RVQNGPVNKGINNIFFKTRMCAKFKLGLCRNGANCNFAHGAEDMR 120
           S                 N PVNKGI+NIFFKTRMCAKFKLGLCRNGA+CNFAHG EDMR
Sbjct: 61  SSPISYSNPSLNSRGHPPNAPVNKGISNIFFKTRMCAKFKLGLCRNGASCNFAHGVEDMR 120

Query: 121 QPPPNWQEIVGIREDDQSVSNWNDDQKIIQKMKLCRKFYNGEECPYGDRCNFLHEDPAKF 180
           QPPPNWQEIVGI+EDDQSV+NWNDDQKIIQKMKLCRKFYNGEECPYGDRCNFLHEDPAKF
Sbjct: 121 QPPPNWQEIVGIKEDDQSVNNWNDDQKIIQKMKLCRKFYNGEECPYGDRCNFLHEDPAKF 180

Query: 181 RDDSGRFRESSAISIGTTVTPLMNGND-SSYSEPSRAVSCSASASDSLRGNGN---AFWK 240
           RDDSGRFRESSAISIGTT TPLMNG+D SSY EPSRA SC  S SD+LR NGN   +FWK
Sbjct: 181 RDDSGRFRESSAISIGTTGTPLMNGSDSSSYIEPSRATSC--SVSDALRANGNVRPSFWK 240

Query: 241 TKLCTKWEVTGHCPFGDKCHFAHGQSELQLSLGREGEVSNPALNINPVVVAMEASPSLAA 300
           TKLCTKWE+TGHCPFGDKCHFAHGQSELQL +GREGEVS  ALN+ P++VAMEAS SL  
Sbjct: 241 TKLCTKWEITGHCPFGDKCHFAHGQSELQLYIGREGEVSTAALNVKPLIVAMEASSSLTT 300

Query: 301 SVATSS-LPEGQAKPCLLKWKGPKKINRIYADWLDDLPLSPTSASKLE 330
           SV  SS LPEGQAKP LLKWKGPKKINRIYADWLDDLPLSP+S SK+E
Sbjct: 301 SVLPSSALPEGQAKPSLLKWKGPKKINRIYADWLDDLPLSPSSTSKME 346

[Close]
BLAST of Carg17518 vs. TrEMBL
Match: tr|A0A0A0LKX6|A0A0A0LKX6_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G006070 PE=4 SV=1)

HSP 1 Score: 577.4 bits (1487), Expect = 2.0e-161
Identity = 280/348 (80.46%), Postives = 300/348 (86.21%), Query Frame = 0 

Query: 1   MSFNDIRGSVIPPPLHPYGANGDATGCWSQYPRNDPFDTQSQFEPQQPPFKRARNSEENL 60
           MSFND+R SVIPPPLH YG+NGDA+GCWSQ+PRNDPFD QSQFE QQPP+KRARNSEEN 
Sbjct: 1   MSFNDMRASVIPPPLHSYGSNGDASGCWSQFPRNDPFDPQSQFEVQQPPYKRARNSEENP 60

Query: 61  S--------------RVQNGPVNKGINNIFFKTRMCAKFKLGLCRNGANCNFAHGAEDMR 120
           S              +  N PVNKGI+NIFFKTRMCAKFKLGLCRNGA+CNFAHG EDMR
Sbjct: 61  SSPISYSNPSLNSRGQPPNAPVNKGISNIFFKTRMCAKFKLGLCRNGASCNFAHGVEDMR 120

Query: 121 QPPPNWQEIVGIREDDQSVSNWNDDQKIIQKMKLCRKFYNGEECPYGDRCNFLHEDPAKF 180
           QPPPNWQEIVGI+EDDQSV+NWNDDQKIIQKMKLCRKFYNGEECPYGDRCNFLHEDPAKF
Sbjct: 121 QPPPNWQEIVGIKEDDQSVNNWNDDQKIIQKMKLCRKFYNGEECPYGDRCNFLHEDPAKF 180

Query: 181 RDDSGRFRESSAISIGTTVTPLMNGND-SSYSEPSRAVSCSASASDSLRGNGN---AFWK 240
           RDDSGRFRESSAISIGTT TPLMNGND SSY EPSR  SC  S SD+LR NGN   +FWK
Sbjct: 181 RDDSGRFRESSAISIGTTGTPLMNGNDSSSYIEPSRVTSC--SVSDALRANGNVRPSFWK 240

Query: 241 TKLCTKWEVTGHCPFGDKCHFAHGQSELQLSLGREGEVSNPALNINPVVVAMEASPSLAA 300
           TKLCTKWE+TGHCPFGDKCHFAHGQSELQL +GREGEVS  ALN+ P++VAMEAS SL  
Sbjct: 241 TKLCTKWEITGHCPFGDKCHFAHGQSELQLYIGREGEVSTAALNVKPLIVAMEASSSLTT 300

Query: 301 SVATSS-LPEGQAKPCLLKWKGPKKINRIYADWLDDLPLSPTSASKLE 330
           +V  SS LPEGQ KP LLKWKGPKKINRIYADWLDDLPLSP+S SK+E
Sbjct: 301 NVVPSSALPEGQEKPSLLKWKGPKKINRIYADWLDDLPLSPSSTSKME 346

[Close]
BLAST of Carg17518 vs. TrEMBL
Match: tr|A0A2P5C1L1|A0A2P5C1L1_9ROSA (Zinc finger, CCCH-type OS=Trema orientalis OX=63057 GN=TorRG33x02_301180 PE=4 SV=1)

HSP 1 Score: 419.9 bits (1078), Expect = 5.4e-114
Identity = 220/346 (63.58%), Postives = 245/346 (70.81%), Query Frame = 0 

Query: 1   MSFNDIRGSVIPPPLHPYGANGDATGCWSQYPRNDPFDTQSQFEPQQPPFKRARNSEENL 60
           MSF D R S        YGA  DA  CW Q+P N+  D Q  FE Q PPFKRARNSEE+ 
Sbjct: 1   MSFPDSR-SPFMQSAPSYGAGTDAISCWPQFPMNNE-DQQFDFEQQPPPFKRARNSEESQ 60

Query: 61  SRVQ------------NGPVNKGINNIFFKTRMCAKFKLGLCRNGANCNFAHGAEDMRQP 120
           S               N P+NKGI+NIFFKTR+CAKFK+GLCRNG NCNFAHG EDMRQP
Sbjct: 61  SNSSPYPPMNTRMIPPNAPINKGISNIFFKTRLCAKFKMGLCRNGENCNFAHGIEDMRQP 120

Query: 121 PPNWQEIVGIR--EDDQSVSNWNDDQKIIQKMKLCRKFYNGEECPYGDRCNFLHEDPAKF 180
           PPNWQE+VG+R  ED  S  NW DDQKII +MKLC+KFYNGEECPYGDRCNFLHEDPAK+
Sbjct: 121 PPNWQELVGLRDNEDRSSSGNWEDDQKIIHRMKLCKKFYNGEECPYGDRCNFLHEDPAKY 180

Query: 181 RDDSGRFRESSAISIGTTVTPLMNGNDSSYSEPSRAVSCSASASDSLRGN--GNAFWKTK 240
           RDD GRFRESSAISIGTT+ P++NGN SS SE SR V+   S SD  R N     +WKTK
Sbjct: 181 RDDLGRFRESSAISIGTTLPPVINGNVSSNSEDSRVVN---SVSDPSRVNMMKPVYWKTK 240

Query: 241 LCTKWEVTGHCPFGDKCHFAHGQSELQLSLGR-EGEVSNPALNINPVVVAMEASPSLAAS 300
           LC KWE TGHCPFG+KCHFAHG +ELQ S GR E E  N AL   P V A+++ PS A S
Sbjct: 241 LCNKWEQTGHCPFGEKCHFAHGNAELQASSGRVEAEALNIALQTKPQVAAIDSLPS-ATS 300

Query: 301 VATSSLPEGQAKPCLLKWKGPKKINRIYADWLDDLPLSPTSASKLE 330
           VA     + Q K CLLKWKGPKKINRIY DWLDDLPL     S++E
Sbjct: 301 VAAFD-EDVQGKKCLLKWKGPKKINRIYGDWLDDLPLVQNLPSRVE 339

[Close]
BLAST of Carg17518 vs. TrEMBL
Match: tr|A0A2P5DYM9|A0A2P5DYM9_PARAD (Zinc finger, CCCH-type OS=Parasponia andersonii OX=3476 GN=PanWU01x14_020530 PE=4 SV=1)

HSP 1 Score: 405.6 bits (1041), Expect = 1.1e-109
Identity = 214/346 (61.85%), Postives = 240/346 (69.36%), Query Frame = 0 

Query: 1   MSFNDIRGSVIPPPLHPYGANGDATGCWSQYPRNDPFDTQSQFEPQQPPFKRARNSEENL 60
           MSF D R S     +  YG   DA  CW Q+P N+  D Q  FE Q PPFKRARNSEE+ 
Sbjct: 1   MSFPDSR-SPFMQSVPSYGTGTDAISCWPQFPMNNE-DQQFDFEQQPPPFKRARNSEESQ 60

Query: 61  SRVQ------------NGPVNKGINNIFFKTRMCAKFKLGLCRNGANCNFAHGAEDMRQP 120
           S               N P+NKGI+NIFFKTR+CAKFK+GLCRNG NCNFAHG EDMRQP
Sbjct: 61  SNSSPYPPMNTRMIPPNAPINKGISNIFFKTRLCAKFKMGLCRNGENCNFAHGIEDMRQP 120

Query: 121 PPNWQEIVGIR--EDDQSVSNWNDDQKIIQKMKLCRKFYNGEECPYGDRCNFLHEDPAKF 180
           PPNWQE+VG+R  ED  S  NW DDQKII +MKLC+KFYNGEECPYGDRCNFLHEDPAK+
Sbjct: 121 PPNWQELVGLRDNEDRSSSGNWEDDQKIIHRMKLCKKFYNGEECPYGDRCNFLHEDPAKY 180

Query: 181 RDDSGRFRESSAISIGTTVTPLMNGNDSSYSEPSRAVSCSASASDSLRGN--GNAFWKTK 240
           RDD GRFRESSAISIGTT  P++NGN    SE SR V+   S SD  R N     +WKTK
Sbjct: 181 RDDLGRFRESSAISIGTTPPPVINGNVPGNSEDSRVVN---SVSDPSRVNMMKPVYWKTK 240

Query: 241 LCTKWEVTGHCPFGDKCHFAHGQSELQLSLGR-EGEVSNPALNINPVVVAMEASPSLAAS 300
           LC KWE TGHCPFG+KCHFAHG +ELQ S GR E E  N AL   P   A+++ PS A S
Sbjct: 241 LCNKWEQTGHCPFGEKCHFAHGNAELQASSGRVEVEALNIALQTKPQGAAIDSLPS-ATS 300

Query: 301 VATSSLPEGQAKPCLLKWKGPKKINRIYADWLDDLPLSPTSASKLE 330
           VA     + Q K C+LKWKG KKINRIY DWLDDLPL     S++E
Sbjct: 301 VAAFD-EDVQGKKCVLKWKGLKKINRIYGDWLDDLPLVQNLPSRVE 339

[Close]
BLAST of Carg17518 vs. TrEMBL
Match: tr|A0A067KBJ1|A0A067KBJ1_JATCU (Uncharacterized protein OS=Jatropha curcas OX=180498 GN=JCGZ_13298 PE=4 SV=1)

HSP 1 Score: 392.5 bits (1007), Expect = 9.3e-106
Identity = 205/353 (58.07%), Postives = 244/353 (69.12%), Query Frame = 0 

Query: 1   MSFNDIRGSVIPPPLH---PYGANGDATGCWSQYP--RNDPFDTQSQFEPQQPPFKRARN 60
           MS+ND +    PP +    PY +  DA G W Q+P   N+ FD  SQFE  QPP+KR RN
Sbjct: 1   MSYNDSQ----PPFMSAQPPYQSGTDAIGIWPQFPLNSNEQFDPHSQFEQHQPPYKRPRN 60

Query: 61  SEENLSRVQNG--------PV-NKGINNIFFKTRMCAKFKLGLCRNGANCNFAHGAEDMR 120
           SE+N S+  N         PV NKG  NIFFKTRMCAKF+ G CRNG NCNFAHG +D+R
Sbjct: 61  SEDNNSQSMNSRMPLPNNLPVNNKGTTNIFFKTRMCAKFRSGNCRNGENCNFAHGMQDLR 120

Query: 121 QPPPNWQEIVGI-----REDDQSVSNWNDDQKIIQKMKLCRKFYNGEECPYGDRCNFLHE 180
           QPPPNWQE+VG+      ED++   NW DDQ+II KMKLC+KFYNGEECPYGDRCNFLHE
Sbjct: 121 QPPPNWQELVGVGGGVRGEDERPSGNWEDDQRIIHKMKLCKKFYNGEECPYGDRCNFLHE 180

Query: 181 DPAKFRDDSGRFRESSAISIGTTVTPLMNGNDSSYSEPSRAVSCSASASDSLRGNG--NA 240
           DP+KFRDD GRFRESSAISIGTT  P+++G+    + P  + S +   SD+ R N     
Sbjct: 181 DPSKFRDDIGRFRESSAISIGTTGQPMLHGS-GGLNAPEVSKSVNNVVSDAFRVNDMKPV 240

Query: 241 FWKTKLCTKWEVTGHCPFGDKCHFAHGQSELQLSLGR-EGEVSNPALNIN--PVVVAMEA 300
           +WKTKLCTKWE TG CPFG+KCHFAHGQ+ELQL   R EGEV N    +   P + A   
Sbjct: 241 YWKTKLCTKWETTGQCPFGEKCHFAHGQAELQLPGERAEGEVGNAGCTLTKPPPIHANNI 300

Query: 301 SPSLAASVATSSLPEGQAKPCLLKWKGPKKINRIYADWLDDLPLSPTSASKLE 330
            PS+ A+V +S + EGQ K CLLKWKGPKKINRIY DWLDDLPL     +++E
Sbjct: 301 CPSMTANV-SSVIEEGQGKKCLLKWKGPKKINRIYGDWLDDLPLVQNLTNQVE 347

The following BLAST results are available for this feature:
BLAST of Carg17518 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022937467.12.9e-19198.48zinc finger CCCH domain-containing protein 39-like [Cucurbita moschata][more]
XP_022965837.17.8e-18996.66zinc finger CCCH domain-containing protein 39-like [Cucurbita maxima][more]
XP_023536864.18.6e-18896.05zinc finger CCCH domain-containing protein 39-like [Cucurbita pepo subsp. pepo][more]
XP_008457806.11.6e-16281.32PREDICTED: zinc finger CCCH domain-containing protein 39-like [Cucumis melo][more]
XP_004139420.13.1e-16180.46PREDICTED: zinc finger CCCH domain-containing protein 39-like [Cucumis sativus] ... [more]
BLAST of Carg17518 vs. TAIR10
Match NameE-valueIdentityDescription
AT3G19360.11.2e-7748.09Zinc finger (CCCH-type) family protein[more]
AT1G32360.13.8e-3630.10Zinc finger (CCCH-type) family protein[more]
AT2G35430.11.5e-2126.59Zinc finger C-x8-C-x5-C-x3-H type family protein[more]
AT1G68200.11.1e-0663.33Zinc finger C-x8-C-x5-C-x3-H type family protein[more]
AT1G66810.11.2e-0560.00Zinc finger C-x8-C-x5-C-x3-H type family protein[more]
BLAST of Carg17518 vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|Q9LT81|C3H39_ARATH2.1e-7648.09Zinc finger CCCH domain-containing protein 39 OS=Arabidopsis thaliana OX=3702 GN... [more]
sp|Q84UQ3|C3H56_ORYSJ2.9e-3831.86Zinc finger CCCH domain-containing protein 56 OS=Oryza sativa subsp. japonica OX... [more]
sp|Q9LQM3|C3H12_ARATH6.8e-3530.10Zinc finger CCCH domain-containing protein 12 OS=Arabidopsis thaliana OX=3702 GN... [more]
sp|Q5PP65|C3H28_ARATH2.8e-2026.59Zinc finger CCCH domain-containing protein 28 OS=Arabidopsis thaliana OX=3702 GN... [more]
sp|Q7XPK1|C3H31_ORYSJ1.5e-1032.46Zinc finger CCCH domain-containing protein 31 OS=Oryza sativa subsp. japonica OX... [more]
BLAST of Carg17518 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A1S3C7N3|A0A1S3C7N3_CUCME1.1e-16281.32zinc finger CCCH domain-containing protein 39-like OS=Cucumis melo OX=3656 GN=LO... [more]
tr|A0A0A0LKX6|A0A0A0LKX6_CUCSA2.0e-16180.46Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G006070 PE=4 SV=1[more]
tr|A0A2P5C1L1|A0A2P5C1L1_9ROSA5.4e-11463.58Zinc finger, CCCH-type OS=Trema orientalis OX=63057 GN=TorRG33x02_301180 PE=4 SV... [more]
tr|A0A2P5DYM9|A0A2P5DYM9_PARAD1.1e-10961.85Zinc finger, CCCH-type OS=Parasponia andersonii OX=3476 GN=PanWU01x14_020530 PE=... [more]
tr|A0A067KBJ1|A0A067KBJ1_JATCU9.3e-10658.07Uncharacterized protein OS=Jatropha curcas OX=180498 GN=JCGZ_13298 PE=4 SV=1[more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0046872metal ion binding
Vocabulary: INTERPRO
TermDefinition
IPR036855Znf_CCCH_sf
IPR000571Znf_CCCH
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0046872 metal ion binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg17518-RACarg17518-RAmRNA


InterPro
Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000571Zinc finger, CCCH-typeSMARTSM00356c3hfinal6coord: 76..102
e-value: 0.0031
score: 26.7
coord: 220..247
e-value: 1.7E-7
score: 40.9
coord: 135..162
e-value: 4.1E-5
score: 33.0
IPR000571Zinc finger, CCCH-typePFAMPF00642zf-CCCHcoord: 136..160
e-value: 1.2E-7
score: 31.3
coord: 77..101
e-value: 7.3E-5
score: 22.5
coord: 221..247
e-value: 7.1E-11
score: 41.6
IPR000571Zinc finger, CCCH-typePROSITEPS50103ZF_C3H1coord: 220..248
score: 16.089
IPR000571Zinc finger, CCCH-typePROSITEPS50103ZF_C3H1coord: 135..163
score: 15.403
IPR000571Zinc finger, CCCH-typePROSITEPS50103ZF_C3H1coord: 76..103
score: 13.929
NoneNo IPR availableGENE3DG3DSA:4.10.1000.10coord: 134..163
e-value: 4.0E-7
score: 31.3
coord: 216..252
e-value: 6.2E-15
score: 56.3
coord: 70..108
e-value: 2.8E-10
score: 41.4
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 29..65
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 32..65
NoneNo IPR availablePANTHERPTHR12547:SF70ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 39coord: 1..324
NoneNo IPR availablePANTHERPTHR12547CCCH ZINC FINGER/TIS11-RELATEDcoord: 1..324
IPR036855Zinc finger, CCCH-type superfamilySUPERFAMILYSSF90229CCCH zinc fingercoord: 135..162
IPR036855Zinc finger, CCCH-type superfamilySUPERFAMILYSSF90229CCCH zinc fingercoord: 219..251
IPR036855Zinc finger, CCCH-type superfamilySUPERFAMILYSSF90229CCCH zinc fingercoord: 74..107

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Carg17518Cla015383Watermelon (97103) v1carwmB0240
Carg17518Cla016728Watermelon (97103) v1carwmB0243
Carg17518Csa2G006070Cucumber (Chinese Long) v2carcuB0282
Carg17518Csa7G433210Cucumber (Chinese Long) v2carcuB0284
Carg17518MELO3C004524Melon (DHL92) v3.5.1carmeB0258
Carg17518MELO3C023403Melon (DHL92) v3.5.1carmeB0254
Carg17518ClCG09G002730Watermelon (Charleston Gray)carwcgB0243
Carg17518ClCG11G002860Watermelon (Charleston Gray)carwcgB0244
Carg17518CSPI02G01550Wild cucumber (PI 183967)carcpiB0286
Carg17518Cucsa.131910Cucumber (Gy14) v1carcgyB0300
Carg17518CmaCh05G013080Cucurbita maxima (Rimu)carcmaB0356
Carg17518CmaCh12G012230Cucurbita maxima (Rimu)carcmaB0355
Carg17518CmoCh12G012510Cucurbita moschata (Rifu)carcmoB0356
Carg17518CmoCh05G013250Cucurbita moschata (Rifu)carcmoB0357
Carg17518Lsi11G003000Bottle gourd (USVL1VR-Ls)carlsiB226
Carg17518Cp4.1LG07g11350Cucurbita pepo (Zucchini)carcpeB0362
Carg17518Cp4.1LG11g10810Cucurbita pepo (Zucchini)carcpeB0357
Carg17518CsGy2G001570Cucumber (Gy14) v2carcgybB0269
Carg17518CsGy7G019030Cucumber (Gy14) v2carcgybB0271
Carg17518MELO3C023403.2Melon (DHL92) v3.6.1carmedB0264
Carg17518MELO3C004524.2Melon (DHL92) v3.6.1carmedB0268
Carg17518CsaV3_7G032610Cucumber (Chinese Long) v3carcucB0288
Carg17518CsaV3_2G002700Cucumber (Chinese Long) v3carcucB0286
Carg17518Cla97C11G209340Watermelon (97103) v2carwmbB0258
Carg17518Bhi06G001670Wax gourdcarwgoB0332
Carg17518Bhi09G000039Wax gourdcarwgoB0335
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
Carg17518Carg10891Silver-seed gourdcarcarB296
The following block(s) are covering this gene:
GeneOrganismBlock
Carg17518Watermelon (Charleston Gray)carwcgB0248
Carg17518Watermelon (97103) v1carwmB0245
Carg17518Watermelon (97103) v2carwmbB0262
Carg17518Silver-seed gourdcarcarB149
Carg17518Cucurbita maxima (Rimu)carcmaB0352
Carg17518Cucurbita moschata (Rifu)carcmoB0353
Carg17518Cucurbita pepo (Zucchini)carcpeB0359
Carg17518Bottle gourd (USVL1VR-Ls)carlsiB228