Carg17399 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg17399
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	RING finger protein
Location	Cucurbita_argyrosperma_scaffold_092 : 419044 .. 422265 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGTATTTCATGGAGTAACAGAAGAAGAAACAATTATCTTCAAAACCCACCTCCGCCCTACCATTCTTCTTCCTCCTTCTATTACCCTTCTGAACCCACATCCCTTCCTCCGCCGCCGCAGACCCATCACTTCACCAATTCCCACCCTCCTCCGCCGCACAGCCACCCTTACACTCCAACTCCCCAGCCGATACCCTTGCCGCCGATTCCTCCTGCCCCTGCTCCTCACTCCTATTACTTTTCTGGTGGGTACAATTCGTGTAATTATGGGAACTCTTCGATGGGGCGTTTCAATTTCCACCCTCATTATGCCAATCAGAGTAATGGGTGGTCTCAATTTCGGCCGGTGATGGTGCCGCCGTTTCTTCCTCCACCGTCTTTGCCGTTTGTGGAGCATCGACAGGCGAAGAAGGTTAGGAATGATGTGAATGTGCATAAGGATACTTTGAGGATTGAGGTGGATGAGCAGAATCCTGATCAGCATTTGGTTTCTTTCGTGTTTGATGCGTTGTATGATGGAAGGTAACTTGAGATGCACTTATTTGAGTTTTGGCTTGTAATTAGTGTTGTGTTGGGCATGTGGGTGGCTGTAGAATGATTTGAAATTGTTTGAAATGGTTCATGATTTGGATCTCAATTCTTGCATTTTGAGTTGGGGATGTCTCTGAAACCTTACTAAGTTTTAGTTTAGCTAGTCTAAGTTAAGGGGCTTAGTAGAAAATGCTTGTCATGATGTAATTTCTTCATTGCTGCTTGGAAGTTCACAATGCTTGCTTGTACTCTCTCTGTGTTCATGAAGCAACATTTTGTAGATTGATGGTACTGTTAGAACTTTCGTAACCTTGTTCTGCATAATGAGGGGTATAAAGAAACTGAATTATGCCTGCGGCCTTTGATTATTGCTGTAACACCCAAGCCCATCGTTACCAGATAGTGTCCGCTTTGGTTCGTTATGTGTCGCCGTTGGCCTCACGGTTTTAAAATGCGTTTGCTAGGAAGAGGTTTCCACACCCTTATGAAGAATGTTTCGTTCCCCTCTCCAACCGACGTGGAATCTCACAATTGTCTTCTGTTATTGTACCACGTAGTTCATGTGTTATTTAGAGGCCTGGGCTTTCTATTGAGATGAGTCCTGTCATAATTTTTAGTACTGCAATTTTTGTATCAATTCAGAATGTCTAGCTTGGGACTTAAAAAGAGCAGTAGGGTAGATAAGATCTATAAGATTTCTTATAAGGGTGTGGAAACCTCACCCTTAACAGATGAATTTTAAAATTGTGAGGCTTACGTGATATATAATAGGTCGAAGTGGAAAATATCTGCTAGCAGTGGGCTTGGACGGTTATAAATGGTATTAGAGTCAAACACCGATCAGTGTGCCAACGAGGACGTTGGCCCCCAAGGGAGTGGATTGTGAGATTTCACATCGGTTGGAGAGGGAAACGAAGTATTCCTTATAAGGGTGTGGAAACCTCTCTCTAACATATGCGTTTTAAAACCATGAGGCTAACGGCGATACATAACGGGTCAAAGCAGACAATATCTGTCAACAGTGAGCTTGGGCTGTTAAACAAGTTCACCGCTAGCAGATATTGTTTTCTTTGGACTTTTTCTTTCGGACTTCTCCTCAAGGTTTTAAAATGTGTCTACTAAGGAGAGGTTTCCACACTCTTAAAAGAAATGTTTTGTTCCCCTCTCCAACCGACGTGGGAGCTCACACCTAAACTTTGTTTTTTCACGTTCCACCGTACTTATTCTGTCATCAGCTTCCTAATTGCTGTTTTGAATATACTTTCTTGTTACTGTTTCTAATTCAATTTCTTTACACGATGAACAGCATTACCATCCTATTTTTTGCCAAGGAAGAGCCCAACTGTAGGTTTGTTCCAATATATCCCGACGCCTTGAAGCCAGTAAAAATCCCATTTCAAAAGGGTCCTGCTCAGAAATTCTTTCAGCCTGTGGGAACTGGCTTTGACTTGGGATTTTTCGAGTTGGATGACCTCTCAAAACCTTCGCCTTCTGAAGACGTTTTCCCGCTCGTTATATCAGCTGAGACTTGCTCACCCTCTCAGTCCAACGATGAACGAATTGGTGAGCCTCAACCAGATAATTCACATATGCAAATCACTCAAGCTGTTCTGGAGAAGAAAAATGGCAATCCTTTCCAAGTTAAGGTGATCCGGCAACTACTATGGATTGATGGAATGCGTTATGAGTTGCGTGAGATATTCGGTATAGGGAGTTCGTCTTCAGAAGGTTTTGACAATAACGACTCCGGTAAGGAGTGTGTGATTTGCATGACCGAACCCAAGGATACTGCTGTATTACCATGTCGACATATGGTAAGGCTCCATTTGCGTGTTTATTCATGGCAACCATTCGACGAAACTTCGATAATCTATCTGCTACATTTGATTTTAAAACCTGTGTGTTCATTTGCAGTGCATGTGCAGTGAGTGTGCCAAGGAACTGAAGCTTCAATCTAATAAATGTCCGATTTGTCGTCAACCGATCGAAGAACTTATAGAAATCAAGATAAATAATAGCAATCAGTGAGAATTACCTCTTCATCCTATGTTGGATTTCATGGTATGGCTGTTAAATTCTTTGTTTGTTATGTGTCATAGTCACACATACTGCATTCTTTTACACACACACACACATATGTATATTTCTTTCTCTTCATATACATCATATTAGTGTAGTATTCCCGACTTCATACCTCGATATCATGTCTAACTATTGAATGACGCCTTACCCGTCATCTCTTAGCTGACTTTCTACTGTAATGTATGTATATGAACGTTCAACATTCATGGGTTTTCGTGTGCGGTGTGTCGATGTTTGATTACACGAATTGGATTCGGGTTTGTAGTTTAAGTATAGGGAGTGGTTGAGTTAAGGTTCTCCCCATATGATAACCTCTTTGTTTTGTCCTTTTTTTTCTTTTGAATGATACATGACTGTTGTATGCAAGGTTAACATTGTTGGTAACATGCTATAAATGGCCTTTTCATTTGCTTCTTCATTTATGAACCATTATTTATTGGACCTGTGGTGTTCATGTGATGAAATGTTGCTGGGACTGGGTGAGTCGACTGTTGGAGAGGGGAACAAAACATTTTTTGTAAGAATGTGGAAACCTCTTCCTAGTAGACACATTTTAAAACCATGAGACTGCTAACGGTGGGTTCGGACTATTACAGTTGGTATCAGA

mRNA sequence

ATGGGTATTTCATGGAGTAACAGAAGAAGAAACAATTATCTTCAAAACCCACCTCCGCCCTACCATTCTTCTTCCTCCTTCTATTACCCTTCTGAACCCACATCCCTTCCTCCGCCGCCGCAGACCCATCACTTCACCAATTCCCACCCTCCTCCGCCGCACAGCCACCCTTACACTCCAACTCCCCAGCCGATACCCTTGCCGCCGATTCCTCCTGCCCCTGCTCCTCACTCCTATTACTTTTCTGGTGGGTACAATTCGTGTAATTATGGGAACTCTTCGATGGGGCGTTTCAATTTCCACCCTCATTATGCCAATCAGAGTAATGGGTGGTCTCAATTTCGGCCGGTGATGGTGCCGCCGTTTCTTCCTCCACCGTCTTTGCCGTTTGTGGAGCATCGACAGGCGAAGAAGGTTAGGAATGATGTGAATGTGCATAAGGATACTTTGAGGATTGAGGTGGATGAGCAGAATCCTGATCAGCATTTGGTTTCTTTCGTGTTTGATGCGTTGTATGATGGAAGCATTACCATCCTATTTTTTGCCAAGGAAGAGCCCAACTGTAGGTTTGTTCCAATATATCCCGACGCCTTGAAGCCAGTAAAAATCCCATTTCAAAAGGGTCCTGCTCAGAAATTCTTTCAGCCTGTGGGAACTGGCTTTGACTTGGGATTTTTCGAGTTGGATGACCTCTCAAAACCTTCGCCTTCTGAAGACGTTTTCCCGCTCGTTATATCAGCTGAGACTTGCTCACCCTCTCAGTCCAACGATGAACGAATTGGTGAGCCTCAACCAGATAATTCACATATGCAAATCACTCAAGCTGTTCTGGAGAAGAAAAATGGCAATCCTTTCCAAGTTAAGGTGATCCGGCAACTACTATGGATTGATGGAATGCGTTATGAGTTGCGTGAGATATTCGGTATAGGGAGTTCGTCTTCAGAAGGTTTTGACAATAACGACTCCGGTAAGGAGTGTGTGATTTGCATGACCGAACCCAAGGATACTGCTGTATTACCATGTCGACATATGTGCATGTGCAGTGAGTGTGCCAAGGAACTGAAGCTTCAATCTAATAAATGTCCGATTTGTCGTCAACCGATCGAAGAACTTATAGAAATCAAGATAAATAATAGCAATCAGTGAGAATTACCTCTTCATCCTATGTTGGATTTCATGGTATGGCTGTTAAATTCTTTGTTTGTTATGTGTCATAGTCACACATACTGCATTCTTTTACACACACACACACATATGTATATTTCTTTCTCTTCATATACATCATATTAGTGTAGTATTCCCGACTTCATACCTCGATATCATGTCTAACTATTGAATGACGCCTTACCCGTCATCTCTTAGCTGACTTTCTACTGTAATGTATGTATATGAACGTTCAACATTCATGGGTTTTCGTGTGCGGTGTGTCGATGTTTGATTACACGAATTGGATTCGGGTTTGTAGTTTAAGTATAGGGAGTGGTTGAGTTAAGGTTCTCCCCATATGATAACCTCTTTGTTTTGTCCTTTTTTTTCTTTTGAATGATACATGACTGTTGTATGCAAGGTTAACATTGTTGGTAACATGCTATAAATGGCCTTTTCATTTGCTTCTTCATTTATGAACCATTATTTATTGGACCTGTGGTGTTCATGTGATGAAATGTTGCTGGGACTGGGTGAGTCGACTGTTGGAGAGGGGAACAAAACATTTTTTGTAAGAATGTGGAAACCTCTTCCTAGTAGACACATTTTAAAACCATGAGACTGCTAACGGTGGGTTCGGACTATTACAGTTGGTATCAGA

Coding sequence (CDS)

ATGGGTATTTCATGGAGTAACAGAAGAAGAAACAATTATCTTCAAAACCCACCTCCGCCCTACCATTCTTCTTCCTCCTTCTATTACCCTTCTGAACCCACATCCCTTCCTCCGCCGCCGCAGACCCATCACTTCACCAATTCCCACCCTCCTCCGCCGCACAGCCACCCTTACACTCCAACTCCCCAGCCGATACCCTTGCCGCCGATTCCTCCTGCCCCTGCTCCTCACTCCTATTACTTTTCTGGTGGGTACAATTCGTGTAATTATGGGAACTCTTCGATGGGGCGTTTCAATTTCCACCCTCATTATGCCAATCAGAGTAATGGGTGGTCTCAATTTCGGCCGGTGATGGTGCCGCCGTTTCTTCCTCCACCGTCTTTGCCGTTTGTGGAGCATCGACAGGCGAAGAAGGTTAGGAATGATGTGAATGTGCATAAGGATACTTTGAGGATTGAGGTGGATGAGCAGAATCCTGATCAGCATTTGGTTTCTTTCGTGTTTGATGCGTTGTATGATGGAAGCATTACCATCCTATTTTTTGCCAAGGAAGAGCCCAACTGTAGGTTTGTTCCAATATATCCCGACGCCTTGAAGCCAGTAAAAATCCCATTTCAAAAGGGTCCTGCTCAGAAATTCTTTCAGCCTGTGGGAACTGGCTTTGACTTGGGATTTTTCGAGTTGGATGACCTCTCAAAACCTTCGCCTTCTGAAGACGTTTTCCCGCTCGTTATATCAGCTGAGACTTGCTCACCCTCTCAGTCCAACGATGAACGAATTGGTGAGCCTCAACCAGATAATTCACATATGCAAATCACTCAAGCTGTTCTGGAGAAGAAAAATGGCAATCCTTTCCAAGTTAAGGTGATCCGGCAACTACTATGGATTGATGGAATGCGTTATGAGTTGCGTGAGATATTCGGTATAGGGAGTTCGTCTTCAGAAGGTTTTGACAATAACGACTCCGGTAAGGAGTGTGTGATTTGCATGACCGAACCCAAGGATACTGCTGTATTACCATGTCGACATATGTGCATGTGCAGTGAGTGTGCCAAGGAACTGAAGCTTCAATCTAATAAATGTCCGATTTGTCGTCAACCGATCGAAGAACTTATAGAAATCAAGATAAATAATAGCAATCAGTGA

Protein sequence

MGISWSNRRRNNYLQNPPPPYHSSSSFYYPSEPTSLPPPPQTHHFTNSHPPPPHSHPYTPTPQPIPLPPIPPAPAPHSYYFSGGYNSCNYGNSSMGRFNFHPHYANQSNGWSQFRPVMVPPFLPPPSLPFVEHRQAKKVRNDVNVHKDTLRIEVDEQNPDQHLVSFVFDALYDGSITILFFAKEEPNCRFVPIYPDALKPVKIPFQKGPAQKFFQPVGTGFDLGFFELDDLSKPSPSEDVFPLVISAETCSPSQSNDERIGEPQPDNSHMQITQAVLEKKNGNPFQVKVIRQLLWIDGMRYELREIFGIGSSSSEGFDNNDSGKECVICMTEPKDTAVLPCRHMCMCSECAKELKLQSNKCPICRQPIEELIEIKINNSNQ

Homology

[Close]

BLAST of Carg17399 vs. NCBI nr
Match: XP_022936869.1 (probable E3 ubiquitin-protein ligase LUL4 [Cucurbita moschata])

HSP 1 Score: 624.4 bits (1609), Expect = 2.5e-175
Identity = 300/302 (99.34%), Postives = 300/302 (99.34%), Query Frame = 0


Query: 80  YFSGGYNSCNYGNSSMGRFNFHPHYANQSNGWSQFRPVMVPPFLPPPSLPFVEHRQAKKV 139
           YFSGGYNSCNYGNSSMGRFNFHPHYANQSNGWSQFRPVMVPPFLPPPSLPFVEHRQAKKV
Sbjct: 74  YFSGGYNSCNYGNSSMGRFNFHPHYANQSNGWSQFRPVMVPPFLPPPSLPFVEHRQAKKV 133

Query: 140 RNDVNVHKDTLRIEVDEQNPDQHLVSFVFDALYDGSITILFFAKEEPNCRFVPIYPDALK 199
           RNDVNVHKDTLRIEVDEQNPDQHLVSFVFDALYDGSITILFFAKEEPNCRFVPIYPDA K
Sbjct: 134 RNDVNVHKDTLRIEVDEQNPDQHLVSFVFDALYDGSITILFFAKEEPNCRFVPIYPDAFK 193

Query: 200 PVKIPFQKGPAQKFFQPVGTGFDLGFFELDDLSKPSPSEDVFPLVISAETCSPSQSNDER 259
           PVKIPFQKGPAQKFFQPVGTGFDLGFFELDDLSKPSPSEDVFPLVISAETCSPSQSNDER
Sbjct: 194 PVKIPFQKGPAQKFFQPVGTGFDLGFFELDDLSKPSPSEDVFPLVISAETCSPSQSNDER 253

Query: 260 IGEPQPDNSHMQITQAVLEKKNGNPFQVKVIRQLLWIDGMRYELREIFGIGSSSSEGFDN 319
           IGEPQPDNSHMQITQAVLEKKNGNPFQVKVIRQLLWID MRYELREIFGIGSSSSEGFDN
Sbjct: 254 IGEPQPDNSHMQITQAVLEKKNGNPFQVKVIRQLLWIDRMRYELREIFGIGSSSSEGFDN 313

Query: 320 NDSGKECVICMTEPKDTAVLPCRHMCMCSECAKELKLQSNKCPICRQPIEELIEIKINNS 379
           NDSGKECVICMTEPKDTAVLPCRHMCMCSECAKELKLQSNKCPICRQPIEELIEIKINNS
Sbjct: 314 NDSGKECVICMTEPKDTAVLPCRHMCMCSECAKELKLQSNKCPICRQPIEELIEIKINNS 373

Query: 380 NQ 382
           NQ
Sbjct: 374 NQ 375

[Close]

BLAST of Carg17399 vs. NCBI nr
Match: XP_023539072.1 (probable E3 ubiquitin-protein ligase LUL4 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 619.4 bits (1596), Expect = 8.2e-174
Identity = 297/302 (98.34%), Postives = 298/302 (98.68%), Query Frame = 0


Query: 80  YFSGGYNSCNYGNSSMGRFNFHPHYANQSNGWSQFRPVMVPPFLPPPSLPFVEHRQAKKV 139
           YFSGGYNSCNYGNS MGRFNFHPHYANQSNGWSQ RPVMVPPFLPPPSLPFVEHRQAKKV
Sbjct: 80  YFSGGYNSCNYGNSPMGRFNFHPHYANQSNGWSQIRPVMVPPFLPPPSLPFVEHRQAKKV 139

Query: 140 RNDVNVHKDTLRIEVDEQNPDQHLVSFVFDALYDGSITILFFAKEEPNCRFVPIYPDALK 199
           RNDVNVHKDTLRIEVD QNPDQHLVSFVFDALYDGSITILFFAKEEPNCRFVPIYPDA K
Sbjct: 140 RNDVNVHKDTLRIEVDGQNPDQHLVSFVFDALYDGSITILFFAKEEPNCRFVPIYPDAFK 199

Query: 200 PVKIPFQKGPAQKFFQPVGTGFDLGFFELDDLSKPSPSEDVFPLVISAETCSPSQSNDER 259
           PVKIPFQKGPAQKFFQP+GTGFDLGFFELDDLSKPSPSEDVFPLVISAETCSPSQSNDER
Sbjct: 200 PVKIPFQKGPAQKFFQPMGTGFDLGFFELDDLSKPSPSEDVFPLVISAETCSPSQSNDER 259

Query: 260 IGEPQPDNSHMQITQAVLEKKNGNPFQVKVIRQLLWIDGMRYELREIFGIGSSSSEGFDN 319
           IGEPQPDNSHMQITQAVLEKKNGNPFQVKVIRQLLWIDGMRYELREIFGIGSSSSEGFDN
Sbjct: 260 IGEPQPDNSHMQITQAVLEKKNGNPFQVKVIRQLLWIDGMRYELREIFGIGSSSSEGFDN 319

Query: 320 NDSGKECVICMTEPKDTAVLPCRHMCMCSECAKELKLQSNKCPICRQPIEELIEIKINNS 379
           NDSGKECVICMTEPKDTAVLPCRHMCMCSECAKELKLQSNKCPICRQPIEELIEIKINNS
Sbjct: 320 NDSGKECVICMTEPKDTAVLPCRHMCMCSECAKELKLQSNKCPICRQPIEELIEIKINNS 379

Query: 380 NQ 382
           NQ
Sbjct: 380 NQ 381

[Close]

BLAST of Carg17399 vs. NCBI nr
Match: XP_022973667.1 (probable E3 ubiquitin-protein ligase LUL4 [Cucurbita maxima])

HSP 1 Score: 610.5 bits (1573), Expect = 3.8e-171
Identity = 293/302 (97.02%), Postives = 295/302 (97.68%), Query Frame = 0


Query: 80  YFSGGYNSCNYGNSSMGRFNFHPHYANQSNGWSQFRPVMVPPFLPPPSLPFVEHRQAKKV 139
           YFSGGYNSCNYGNS MGRFNFHPHYANQSNGWS  RPVMVPP LPPPSLPFVEHRQAKKV
Sbjct: 80  YFSGGYNSCNYGNSPMGRFNFHPHYANQSNGWSPIRPVMVPPLLPPPSLPFVEHRQAKKV 139

Query: 140 RNDVNVHKDTLRIEVDEQNPDQHLVSFVFDALYDGSITILFFAKEEPNCRFVPIYPDALK 199
           RNDVNVHKDTLRIEVDEQ PDQHLVSFVFDALYDGSITILFFAKEEPNCRFVPIYPDA K
Sbjct: 140 RNDVNVHKDTLRIEVDEQIPDQHLVSFVFDALYDGSITILFFAKEEPNCRFVPIYPDAFK 199

Query: 200 PVKIPFQKGPAQKFFQPVGTGFDLGFFELDDLSKPSPSEDVFPLVISAETCSPSQSNDER 259
           PVKIPFQKGPAQKFFQP+GTGFDLGFFELDDLSKPSPSEDVFPLVI+AETCSPSQS DER
Sbjct: 200 PVKIPFQKGPAQKFFQPMGTGFDLGFFELDDLSKPSPSEDVFPLVIAAETCSPSQSKDER 259

Query: 260 IGEPQPDNSHMQITQAVLEKKNGNPFQVKVIRQLLWIDGMRYELREIFGIGSSSSEGFDN 319
           IGEPQPDNSHMQITQAVLEKKNGNPFQVKVIRQLLWIDGMRYELREIFGIGSSSSEGFDN
Sbjct: 260 IGEPQPDNSHMQITQAVLEKKNGNPFQVKVIRQLLWIDGMRYELREIFGIGSSSSEGFDN 319

Query: 320 NDSGKECVICMTEPKDTAVLPCRHMCMCSECAKELKLQSNKCPICRQPIEELIEIKINNS 379
           NDSGKECVICMTEPKDTAVLPCRHMCMCSECAKELKLQSNKCPICRQPIEELIEIKINNS
Sbjct: 320 NDSGKECVICMTEPKDTAVLPCRHMCMCSECAKELKLQSNKCPICRQPIEELIEIKINNS 379

Query: 380 NQ 382
           NQ
Sbjct: 380 NQ 381

[Close]

BLAST of Carg17399 vs. NCBI nr
Match: XP_022975424.1 (probable E3 ubiquitin-protein ligase LUL4 [Cucurbita maxima])

HSP 1 Score: 602.8 bits (1553), Expect = 7.9e-169
Identity = 293/306 (95.75%), Postives = 294/306 (96.08%), Query Frame = 0


Query: 80  YFSGGYNSCNYGNSSMGRFNFHPHYANQSNGWSQFRPVMVPPFLPPPSLPFVEHRQAKKV 139
           YFSGGYNSCNYGNS MGRFNFHPHYANQSNGWS  RPVMVPP LPPPSLPFVEHRQAKKV
Sbjct: 90  YFSGGYNSCNYGNSPMGRFNFHPHYANQSNGWSPIRPVMVPPLLPPPSLPFVEHRQAKKV 149

Query: 140 RNDVNVHKDTLRIEVDEQNPDQHLVSFVFDALYDGSITILFFAKEEPNCRFVPIYPDALK 199
           RNDVNVHKDTLRIEVDEQ PDQHLVSFVFDALYDGSITILFFAKEEPNCRFVPIYPDA K
Sbjct: 150 RNDVNVHKDTLRIEVDEQIPDQHLVSFVFDALYDGSITILFFAKEEPNCRFVPIYPDAFK 209

Query: 200 PVKIPFQKGPAQKFFQPVGTGFDLGFFELDDLSKPSPSEDVFPLVI----SAETCSPSQS 259
           PVKIPFQKGPAQKFFQP+GTGFDLGFFELDDLSKPSPSEDVFPLVI    SAETCSPSQS
Sbjct: 210 PVKIPFQKGPAQKFFQPMGTGFDLGFFELDDLSKPSPSEDVFPLVIAAETSAETCSPSQS 269

Query: 260 NDERIGEPQPDNSHMQITQAVLEKKNGNPFQVKVIRQLLWIDGMRYELREIFGIGSSSSE 319
            DERIGEPQPDNSHMQITQAVLEKKNGNPFQVKVIRQLLWIDGMRYELREIFGIGSSSSE
Sbjct: 270 KDERIGEPQPDNSHMQITQAVLEKKNGNPFQVKVIRQLLWIDGMRYELREIFGIGSSSSE 329

Query: 320 GFDNNDSGKECVICMTEPKDTAVLPCRHMCMCSECAKELKLQSNKCPICRQPIEELIEIK 379
           GFDNNDSGKECVICMTEPKDTAVLPCRHMCMCSECAKELKLQSNKCPICRQPIEELIEIK
Sbjct: 330 GFDNNDSGKECVICMTEPKDTAVLPCRHMCMCSECAKELKLQSNKCPICRQPIEELIEIK 389

Query: 380 INNSNQ 382
           IN SNQ
Sbjct: 390 INYSNQ 395

[Close]

BLAST of Carg17399 vs. NCBI nr
Match: XP_022138033.1 (probable E3 ubiquitin-protein ligase LUL4 [Momordica charantia])

HSP 1 Score: 585.5 bits (1508), Expect = 1.3e-163
Identity = 277/302 (91.72%), Postives = 292/302 (96.69%), Query Frame = 0


Query: 80  YFSGGYNSCNYGNSSMGRFNFHPHYANQSNGWSQFRPVMVPPFLPPPSLPFVEHRQAKKV 139
           YFSGGYNSCNY  S+MGRFNFHP+YANQSNGWSQ RP M PP LPPP LPFVEHRQAKKV
Sbjct: 73  YFSGGYNSCNYAASTMGRFNFHPYYANQSNGWSQIRPAMGPPLLPPPPLPFVEHRQAKKV 132

Query: 140 RNDVNVHKDTLRIEVDEQNPDQHLVSFVFDALYDGSITILFFAKEEPNCRFVPIYPDALK 199
           RNDVNVHKDTLRIEVDEQNPD+HLVSFVFDALYDGSITILFFAKEE NCRFVP+YP+A K
Sbjct: 133 RNDVNVHKDTLRIEVDEQNPDRHLVSFVFDALYDGSITILFFAKEELNCRFVPVYPEAFK 192

Query: 200 PVKIPFQKGPAQKFFQPVGTGFDLGFFELDDLSKPSPSEDVFPLVISAETCSPSQSNDER 259
           PV+IPFQKGPAQKFFQPVGTGFDLGFFELDDLSKPSP+ED+FPLVISAETCSPSQSNDER
Sbjct: 193 PVRIPFQKGPAQKFFQPVGTGFDLGFFELDDLSKPSPAEDIFPLVISAETCSPSQSNDER 252

Query: 260 IGEPQPDNSHMQITQAVLEKKNGNPFQVKVIRQLLWIDGMRYELREIFGIGSSSSEGFDN 319
           IGEPQPDNSHMQITQAVLEKKNG PFQV+VIRQLLWIDG+RYELREIFGIGSSS+EGFD+
Sbjct: 253 IGEPQPDNSHMQITQAVLEKKNGGPFQVRVIRQLLWIDGVRYELREIFGIGSSSAEGFDD 312

Query: 320 NDSGKECVICMTEPKDTAVLPCRHMCMCSECAKELKLQSNKCPICRQPIEELIEIKINNS 379
           ND+GKECVICMTEPKDTAVLPCRHMCMCSECAKEL+LQSNKCPICRQPIEELIEIKINNS
Sbjct: 313 NDTGKECVICMTEPKDTAVLPCRHMCMCSECAKELRLQSNKCPICRQPIEELIEIKINNS 372

Query: 380 NQ 382
           +Q
Sbjct: 373 DQ 374

[Close]

BLAST of Carg17399 vs. TAIR10
Match: AT3G06140.1 (RING/U-box superfamily protein)

HSP 1 Score: 338.6 bits (867), Expect = 5.1e-93
Identity = 170/282 (60.28%), Postives = 207/282 (73.40%), Query Frame = 0


Query: 107 QSNGWSQFRPVMVPPFLPPPS------LPFVEHRQAKKVRNDVNVHKDTLRIEVDEQNPD 166
           Q N W    P+M P +  PP        P++E + AKKVRNDVNVH+DT+R+EVD+  P 
Sbjct: 86  QPNWWG---PMMRPAYYCPPQPQTQPPKPYLEQQNAKKVRNDVNVHRDTVRLEVDDLVPG 145

Query: 167 QHLVSFVFDALYDGSITILFFAKEEPNCRFVPIYPDALKPVKIPFQKGPAQKFFQPVGTG 226
            HLVSFVFDAL+DGS TI FFAKEEPNC  +P +P+   P +  FQKGP QKF QP GTG
Sbjct: 146 HHLVSFVFDALFDGSFTITFFAKEEPNCTIIPQFPEVYSPTRFHFQKGPGQKFLQPSGTG 205

Query: 227 FDLGFFELDDLSKPSPSEDVFPLVISAETCSPSQSNDERIGEPQPDNSHMQITQAVLEKK 286
            DL FF LDDLSKP   EDV+PLVISAET     S  E+       + H Q+TQAVLEK 
Sbjct: 206 TDLSFFVLDDLSKPL-EEDVYPLVISAETIISPNSISEQ------SSVHKQVTQAVLEKD 265

Query: 287 NGNPFQVKVIRQLLWIDGMRYELREIFG-IGSSSSEGFDNNDSGKECVICMTEPKDTAVL 346
           N   F+VKV++Q+LWI+G+RYELRE++G     ++ G D + SG ECVICMTE KDTAVL
Sbjct: 266 NDGSFKVKVVKQILWIEGVRYELRELYGSTTQGAASGLDESGSGTECVICMTEAKDTAVL 325

Query: 347 PCRHMCMCSECAKELKLQSNKCPICRQPIEELIEIKINNSNQ 382
           PCRH+CMCS+CAKEL+LQSNKCPICRQPIEEL+EIK+N+S++
Sbjct: 326 PCRHLCMCSDCAKELRLQSNKCPICRQPIEELLEIKMNSSDE 357

[Close]

BLAST of Carg17399 vs. TAIR10
Match: AT5G19080.1 (RING/U-box superfamily protein)

HSP 1 Score: 270.4 bits (690), Expect = 1.7e-72
Identity = 138/267 (51.69%), Postives = 179/267 (67.04%), Query Frame = 0


Query: 120 PPFLPPPSLPFVEHRQAKKVRNDVNVHKDTLRIEVDEQNPDQHLVSFVFDALYDGSITIL 179
           P  +  P  P+VEH+ AKKV+NDVNV+K                               +
Sbjct: 118 PVAVMEPPAPYVEHQTAKKVKNDVNVNKAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXI 177

Query: 180 FFAKEEPNCRFVPIYPDALKPVKIPFQKGPAQKFFQPVGTGFDLGFFELDDLSKPSPSED 239
           FF +EE  C  VP  P+A  P+K+PFQKG  QKF Q  GTG DLGFF LDDLSKPSP E+
Sbjct: 178 FFGEEESKCTIVPHLPEAFPPIKVPFQKGAGQKFLQAPGTGIDLGFFSLDDLSKPSP-EE 237

Query: 240 VFPLVISAET-CSPSQSNDERIGEPQPDNSHMQITQAVLEKKNGNPFQVKVIRQLLWIDG 299
           V+PLVISAET  SPS  ++E +        H QITQAVLEK N   F+VKV++Q+LWI+G
Sbjct: 238 VYPLVISAETVISPSSVSEEPL-------VHKQITQAVLEKTNDGSFKVKVMKQILWIEG 297

Query: 300 MRYELREIFGIGSSSSEGFD----NNDSGKECVICMTEPKDTAVLPCRHMCMCSECAKEL 359
            RYEL+E++GI +S ++G       +  GKECVIC+TEPKDTAV+PCRH+C+CS+CA+EL
Sbjct: 298 ERYELQELYGIDNSITQGTAASGLEDTGGKECVICLTEPKDTAVMPCRHLCLCSDCAEEL 357

Query: 360 KLQSNKCPICRQPIEELIEIKINNSNQ 382
           + Q+NKCPICRQPI EL++IK+ +S++
Sbjct: 358 RFQTNKCPICRQPIHELVKIKVESSDE 376

[Close]

BLAST of Carg17399 vs. TAIR10
Match: AT3G09770.1 (RING/U-box superfamily protein)

HSP 1 Score: 259.2 bits (661), Expect = 3.9e-69
Identity = 123/256 (48.05%), Postives = 174/256 (67.97%), Query Frame = 0


Query: 129 PFVEHRQAKKVRNDVNVHKDTLRIEVDEQNPDQHLVSFVFDALYDGSITILFFAKEEPNC 188
           P+VEH++A  +RNDVN+ K++LR+E D  NP + LVSF FDA   G I+++FFAKE  +C
Sbjct: 122 PYVEHQKAVTIRNDVNLKKESLRLEPDPDNPGRFLVSFTFDATVSGRISVIFFAKESEDC 181

Query: 189 RFVPIYPDALKPVKIPFQKGPAQKFFQPVGTGFDLGFFELDDLSKPSPSEDVFPLVISAE 248
           +      D L P+ + F+KG  QKF Q  G+G D   FE  +L K +   +++PL + AE
Sbjct: 182 KLTATKEDILPPITLDFEKGLGQKFKQSSGSGIDFSVFEDVELFKAAADTEIYPLAVKAE 241

Query: 249 TCSPSQSNDERIGEPQPDNSHMQITQAVLEKKNGNPFQVKVIRQLLWIDGMRYELREIFG 308
                  N+E   E +  + + QITQAV EK  G   +++V++Q+LW++G RYEL+EI+G
Sbjct: 242 AAPSGGENEE---EERSGSKNAQITQAVYEKDKGE-IKIRVVKQILWVNGTRYELQEIYG 301

Query: 309 IGSS----SSEGFDNNDSGKECVICMTEPKDTAVLPCRHMCMCSECAKELKLQSNKCPIC 368
           IG++         D ND GKECVIC++EP+DT VLPCRHMCMCS CAK L+ Q+N+CPIC
Sbjct: 302 IGNTVEGDDDSADDANDPGKECVICLSEPRDTTVLPCRHMCMCSGCAKVLRFQTNRCPIC 361

Query: 369 RQPIEELIEIKINNSN 381
           RQP+E L+EIK++ +N
Sbjct: 362 RQPVERLLEIKVHGNN 373

[Close]

BLAST of Carg17399 vs. TAIR10
Match: AT3G53410.1 (RING/U-box superfamily protein)

HSP 1 Score: 241.1 bits (614), Expect = 1.1e-63
Identity = 116/253 (45.85%), Postives = 167/253 (66.01%), Query Frame = 0


Query: 130 FVEHRQAKKVRNDVNVHKDTLRIEVDEQNPDQHLVSFVFDALYDGSITILFFAKEEPNCR 189
           +VEH++A  +RND+N+ K+TLR+E DEQNP + L+SF FDA   GSIT++FFAKE  +C 
Sbjct: 54  YVEHQEAVTIRNDINLKKETLRLEPDEQNPGKFLLSFTFDASVPGSITVMFFAKEGKDCN 113

Query: 190 FVPIYPDALKPVKIPFQKGPAQKFFQPVGTGFDLGFFELDDLSKPSPSEDVFPLVISAET 249
            +    D     ++ F KG  Q+F Q  GTG D       DL + + + DV+ + + AE 
Sbjct: 114 LIATKEDLFPSTQVSFAKGLEQRFKQACGTGIDFSDMSEADLVEANET-DVYHVAVKAEV 173

Query: 250 CSPSQSNDERIGEPQPDNSHMQITQAVLEKKNGNPFQVKVIRQLLWIDGMRYELREIFGI 309
            S           P+    + QIT  VLEK +   ++ +V++Q+LW++G RY L+EI+GI
Sbjct: 174 VSEDD-------HPESGTPNRQITHVVLEKDHKGEYKARVVKQILWVNGNRYVLQEIYGI 233

Query: 310 GSS-SSEGFDNNDSGKECVICMTEPKDTAVLPCRHMCMCSECAKELKLQSNKCPICRQPI 369
           G++    G D N+ GKECVIC++EP+DT VLPCRHMCMCS CAK L+ Q+N CPICRQP+
Sbjct: 234 GNTVDDNGEDANERGKECVICLSEPRDTTVLPCRHMCMCSGCAKLLRFQTNLCPICRQPV 293

Query: 370 EELIEIKINNSNQ 382
           + L+EI +NN+++
Sbjct: 294 DRLLEITVNNNDR 298

[Close]

BLAST of Carg17399 vs. TAIR10
Match: AT5G03200.1 (RING/U-box superfamily protein)

HSP 1 Score: 224.9 bits (572), Expect = 8.2e-59
Identity = 118/257 (45.91%), Postives = 165/257 (64.20%), Query Frame = 0


Query: 121 PFLPPPSLPFVEHRQAKKVRNDVNVHKDTLRIEVDEQNPDQHLVSFVFDALYDGSITILF 180
           P LPPP+     H++A  +RNDVN+ K TL +  D +NP++ LVSF FDA   G IT++F
Sbjct: 97  PILPPPT---YVHQKAVTIRNDVNLKKKTLTLIPDPENPNRLLVSFTFDASMPGRITVVF 156

Query: 181 FAKEEPNCRFVPIYPDALKPVKIPFQKGPAQKFFQPVGTGFDLGFFELDDLSKPSPSEDV 240
           FA E+  C       D L P+   F +G  QKF Q  GTG DL  F+  +L K     DV
Sbjct: 157 FATEDAECNLRATKEDTLPPITFDFGEGLGQKFIQSSGTGIDLTAFKDSELFK-EVDTDV 216

Query: 241 FPLVISAETCSPSQSNDERIGEPQPDNSHMQITQAVLEKKNGNPFQVKVIRQLLWIDGMR 300
           FPL + AE  +P++       E +  ++++QITQ V  K+ G   +++V++Q+LW++  R
Sbjct: 217 FPLAVKAE-ATPAE-------EGKSGSTNVQITQVVYTKEKGE-IKIEVVKQILWVNKRR 276

Query: 301 YELREIFGIGSSSSEGFDNNDSGKECVICMTEPKDTAVLPCRHMCMCSECAKELKLQSNK 360
           YEL EI+GI ++     D +D GKECV+C++EP+DT VLPCRHMCMCS CAK L+ Q+N 
Sbjct: 277 YELLEIYGIENT----VDGSDEGKECVVCLSEPRDTTVLPCRHMCMCSGCAKALRFQTNL 336

Query: 361 CPICRQPIEELIEIKIN 378
           CP+CRQP+E L+EI  N
Sbjct: 337 CPVCRQPVEMLLEINKN 336

[Close]

BLAST of Carg17399 vs. Swiss-Prot
Match: sp|Q8LA32|LUL4_ARATH (Probable E3 ubiquitin-protein ligase LUL4 OS=Arabidopsis thaliana OX=3702 GN=LUL4 PE=2 SV=1)

HSP 1 Score: 338.6 bits (867), Expect = 9.1e-92
Identity = 170/282 (60.28%), Postives = 207/282 (73.40%), Query Frame = 0


Query: 107 QSNGWSQFRPVMVPPFLPPPS------LPFVEHRQAKKVRNDVNVHKDTLRIEVDEQNPD 166
           Q N W    P+M P +  PP        P++E + AKKVRNDVNVH+DT+R+EVD+  P 
Sbjct: 86  QPNWWG---PMMRPAYYCPPQPQTQPPKPYLEQQNAKKVRNDVNVHRDTVRLEVDDLVPG 145

Query: 167 QHLVSFVFDALYDGSITILFFAKEEPNCRFVPIYPDALKPVKIPFQKGPAQKFFQPVGTG 226
            HLVSFVFDAL+DGS TI FFAKEEPNC  +P +P+   P +  FQKGP QKF QP GTG
Sbjct: 146 HHLVSFVFDALFDGSFTITFFAKEEPNCTIIPQFPEVYSPTRFHFQKGPGQKFLQPSGTG 205

Query: 227 FDLGFFELDDLSKPSPSEDVFPLVISAETCSPSQSNDERIGEPQPDNSHMQITQAVLEKK 286
            DL FF LDDLSKP   EDV+PLVISAET     S  E+       + H Q+TQAVLEK 
Sbjct: 206 TDLSFFVLDDLSKPL-EEDVYPLVISAETIISPNSISEQ------SSVHKQVTQAVLEKD 265

Query: 287 NGNPFQVKVIRQLLWIDGMRYELREIFG-IGSSSSEGFDNNDSGKECVICMTEPKDTAVL 346
           N   F+VKV++Q+LWI+G+RYELRE++G     ++ G D + SG ECVICMTE KDTAVL
Sbjct: 266 NDGSFKVKVVKQILWIEGVRYELRELYGSTTQGAASGLDESGSGTECVICMTEAKDTAVL 325

Query: 347 PCRHMCMCSECAKELKLQSNKCPICRQPIEELIEIKINNSNQ 382
           PCRH+CMCS+CAKEL+LQSNKCPICRQPIEEL+EIK+N+S++
Sbjct: 326 PCRHLCMCSDCAKELRLQSNKCPICRQPIEELLEIKMNSSDE 357

[Close]

BLAST of Carg17399 vs. Swiss-Prot
Match: sp|Q84ME1|LUL3_ARATH (Probable E3 ubiquitin-protein ligase LUL3 OS=Arabidopsis thaliana OX=3702 GN=LUL3 PE=1 SV=1)

HSP 1 Score: 270.4 bits (690), Expect = 3.1e-71
Identity = 138/267 (51.69%), Postives = 179/267 (67.04%), Query Frame = 0


Query: 120 PPFLPPPSLPFVEHRQAKKVRNDVNVHKDTLRIEVDEQNPDQHLVSFVFDALYDGSITIL 179
           P  +  P  P+VEH+ AKKV+NDVNV+K                               +
Sbjct: 118 PVAVMEPPAPYVEHQTAKKVKNDVNVNKAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXI 177

Query: 180 FFAKEEPNCRFVPIYPDALKPVKIPFQKGPAQKFFQPVGTGFDLGFFELDDLSKPSPSED 239
           FF +EE  C  VP  P+A  P+K+PFQKG  QKF Q  GTG DLGFF LDDLSKPSP E+
Sbjct: 178 FFGEEESKCTIVPHLPEAFPPIKVPFQKGAGQKFLQAPGTGIDLGFFSLDDLSKPSP-EE 237

Query: 240 VFPLVISAET-CSPSQSNDERIGEPQPDNSHMQITQAVLEKKNGNPFQVKVIRQLLWIDG 299
           V+PLVISAET  SPS  ++E +        H QITQAVLEK N   F+VKV++Q+LWI+G
Sbjct: 238 VYPLVISAETVISPSSVSEEPL-------VHKQITQAVLEKTNDGSFKVKVMKQILWIEG 297

Query: 300 MRYELREIFGIGSSSSEGFD----NNDSGKECVICMTEPKDTAVLPCRHMCMCSECAKEL 359
            RYEL+E++GI +S ++G       +  GKECVIC+TEPKDTAV+PCRH+C+CS+CA+EL
Sbjct: 298 ERYELQELYGIDNSITQGTAASGLEDTGGKECVICLTEPKDTAVMPCRHLCLCSDCAEEL 357

Query: 360 KLQSNKCPICRQPIEELIEIKINNSNQ 382
           + Q+NKCPICRQPI EL++IK+ +S++
Sbjct: 358 RFQTNKCPICRQPIHELVKIKVESSDE 376

[Close]

BLAST of Carg17399 vs. Swiss-Prot
Match: sp|Q9S752|LOFG2_ARATH (Probable E3 ubiquitin-protein ligase LOG2 OS=Arabidopsis thaliana OX=3702 GN=LOG2 PE=1 SV=1)

HSP 1 Score: 259.2 bits (661), Expect = 7.0e-68
Identity = 123/256 (48.05%), Postives = 174/256 (67.97%), Query Frame = 0


Query: 129 PFVEHRQAKKVRNDVNVHKDTLRIEVDEQNPDQHLVSFVFDALYDGSITILFFAKEEPNC 188
           P+VEH++A  +RNDVN+ K++LR+E D  NP + LVSF FDA   G I+++FFAKE  +C
Sbjct: 122 PYVEHQKAVTIRNDVNLKKESLRLEPDPDNPGRFLVSFTFDATVSGRISVIFFAKESEDC 181

Query: 189 RFVPIYPDALKPVKIPFQKGPAQKFFQPVGTGFDLGFFELDDLSKPSPSEDVFPLVISAE 248
           +      D L P+ + F+KG  QKF Q  G+G D   FE  +L K +   +++PL + AE
Sbjct: 182 KLTATKEDILPPITLDFEKGLGQKFKQSSGSGIDFSVFEDVELFKAAADTEIYPLAVKAE 241

Query: 249 TCSPSQSNDERIGEPQPDNSHMQITQAVLEKKNGNPFQVKVIRQLLWIDGMRYELREIFG 308
                  N+E   E +  + + QITQAV EK  G   +++V++Q+LW++G RYEL+EI+G
Sbjct: 242 AAPSGGENEE---EERSGSKNAQITQAVYEKDKGE-IKIRVVKQILWVNGTRYELQEIYG 301

Query: 309 IGSS----SSEGFDNNDSGKECVICMTEPKDTAVLPCRHMCMCSECAKELKLQSNKCPIC 368
           IG++         D ND GKECVIC++EP+DT VLPCRHMCMCS CAK L+ Q+N+CPIC
Sbjct: 302 IGNTVEGDDDSADDANDPGKECVICLSEPRDTTVLPCRHMCMCSGCAKVLRFQTNRCPIC 361

Query: 369 RQPIEELIEIKINNSN 381
           RQP+E L+EIK++ +N
Sbjct: 362 RQPVERLLEIKVHGNN 373

[Close]

BLAST of Carg17399 vs. Swiss-Prot
Match: sp|Q9LFH6|LUL2_ARATH (Probable E3 ubiquitin-protein ligase LUL2 OS=Arabidopsis thaliana OX=3702 GN=LUL2 PE=2 SV=1)

HSP 1 Score: 241.1 bits (614), Expect = 2.0e-62
Identity = 116/253 (45.85%), Postives = 167/253 (66.01%), Query Frame = 0


Query: 130 FVEHRQAKKVRNDVNVHKDTLRIEVDEQNPDQHLVSFVFDALYDGSITILFFAKEEPNCR 189
           +VEH++A  +RND+N+ K+TLR+E DEQNP + L+SF FDA   GSIT++FFAKE  +C 
Sbjct: 54  YVEHQEAVTIRNDINLKKETLRLEPDEQNPGKFLLSFTFDASVPGSITVMFFAKEGKDCN 113

Query: 190 FVPIYPDALKPVKIPFQKGPAQKFFQPVGTGFDLGFFELDDLSKPSPSEDVFPLVISAET 249
            +    D     ++ F KG  Q+F Q  GTG D       DL + + + DV+ + + AE 
Sbjct: 114 LIATKEDLFPSTQVSFAKGLEQRFKQACGTGIDFSDMSEADLVEANET-DVYHVAVKAEV 173

Query: 250 CSPSQSNDERIGEPQPDNSHMQITQAVLEKKNGNPFQVKVIRQLLWIDGMRYELREIFGI 309
            S           P+    + QIT  VLEK +   ++ +V++Q+LW++G RY L+EI+GI
Sbjct: 174 VSEDD-------HPESGTPNRQITHVVLEKDHKGEYKARVVKQILWVNGNRYVLQEIYGI 233

Query: 310 GSS-SSEGFDNNDSGKECVICMTEPKDTAVLPCRHMCMCSECAKELKLQSNKCPICRQPI 369
           G++    G D N+ GKECVIC++EP+DT VLPCRHMCMCS CAK L+ Q+N CPICRQP+
Sbjct: 234 GNTVDDNGEDANERGKECVICLSEPRDTTVLPCRHMCMCSGCAKLLRFQTNLCPICRQPV 293

Query: 370 EELIEIKINNSNQ 382
           + L+EI +NN+++
Sbjct: 294 DRLLEITVNNNDR 298

[Close]

BLAST of Carg17399 vs. Swiss-Prot
Match: sp|Q9LYW5|LUL1_ARATH (Probable E3 ubiquitin-protein ligase LUL1 OS=Arabidopsis thaliana OX=3702 GN=LUL1 PE=1 SV=1)

HSP 1 Score: 224.9 bits (572), Expect = 1.5e-57
Identity = 118/257 (45.91%), Postives = 165/257 (64.20%), Query Frame = 0


Query: 121 PFLPPPSLPFVEHRQAKKVRNDVNVHKDTLRIEVDEQNPDQHLVSFVFDALYDGSITILF 180
           P LPPP+     H++A  +RNDVN+ K TL +  D +NP++ LVSF FDA   G IT++F
Sbjct: 97  PILPPPT---YVHQKAVTIRNDVNLKKKTLTLIPDPENPNRLLVSFTFDASMPGRITVVF 156

Query: 181 FAKEEPNCRFVPIYPDALKPVKIPFQKGPAQKFFQPVGTGFDLGFFELDDLSKPSPSEDV 240
           FA E+  C       D L P+   F +G  QKF Q  GTG DL  F+  +L K     DV
Sbjct: 157 FATEDAECNLRATKEDTLPPITFDFGEGLGQKFIQSSGTGIDLTAFKDSELFK-EVDTDV 216

Query: 241 FPLVISAETCSPSQSNDERIGEPQPDNSHMQITQAVLEKKNGNPFQVKVIRQLLWIDGMR 300
           FPL + AE  +P++       E +  ++++QITQ V  K+ G   +++V++Q+LW++  R
Sbjct: 217 FPLAVKAE-ATPAE-------EGKSGSTNVQITQVVYTKEKGE-IKIEVVKQILWVNKRR 276

Query: 301 YELREIFGIGSSSSEGFDNNDSGKECVICMTEPKDTAVLPCRHMCMCSECAKELKLQSNK 360
           YEL EI+GI ++     D +D GKECV+C++EP+DT VLPCRHMCMCS CAK L+ Q+N 
Sbjct: 277 YELLEIYGIENT----VDGSDEGKECVVCLSEPRDTTVLPCRHMCMCSGCAKALRFQTNL 336

Query: 361 CPICRQPIEELIEIKIN 378
           CP+CRQP+E L+EI  N
Sbjct: 337 CPVCRQPVEMLLEINKN 336

[Close]

BLAST of Carg17399 vs. TrEMBL
Match: tr|A0A1S3AXS8|A0A1S3AXS8_CUCME (probable E3 ubiquitin-protein ligase LUL4 OS=Cucumis melo OX=3656 GN=LOC103483745 PE=4 SV=1)

HSP 1 Score: 579.3 bits (1492), Expect = 6.2e-162
Identity = 274/302 (90.73%), Postives = 290/302 (96.03%), Query Frame = 0


Query: 80  YFSGGYNSCNYGNSSMGRFNFHPHYANQSNGWSQFRPVMVPPFLPPPSLPFVEHRQAKKV 139
           YFSGGYNSCNYGNSSMGRFNF+P+YANQSNGWSQ RP M PP LPPP LP VEHRQAKKV
Sbjct: 99  YFSGGYNSCNYGNSSMGRFNFYPYYANQSNGWSQIRPPMGPPLLPPPPLPIVEHRQAKKV 158

Query: 140 RNDVNVHKDTLRIEVDEQNPDQHLVSFVFDALYDGSITILFFAKEEPNCRFVPIYPDALK 199
           RNDVNVHKDTL+IEVDEQNP  HLVSFVFDALYDGSITILFFAKEEPNCRFVP+YPDA K
Sbjct: 159 RNDVNVHKDTLKIEVDEQNPGHHLVSFVFDALYDGSITILFFAKEEPNCRFVPVYPDAFK 218

Query: 200 PVKIPFQKGPAQKFFQPVGTGFDLGFFELDDLSKPSPSEDVFPLVISAETCSPSQSNDER 259
           PVKIPFQKGPAQKFFQPVGTGFDLGFF+LDDLSKPSP+ED FPLVISAETCSPSQS+DER
Sbjct: 219 PVKIPFQKGPAQKFFQPVGTGFDLGFFDLDDLSKPSPAEDTFPLVISAETCSPSQSDDER 278

Query: 260 IGEPQPDNSHMQITQAVLEKKNGNPFQVKVIRQLLWIDGMRYELREIFGIGSSSSEGFDN 319
           +GEPQ DNSHMQITQAVLEKKNG PFQVKVIRQLLWIDG+RYELREIFGIGSSS+EGFD+
Sbjct: 279 MGEPQQDNSHMQITQAVLEKKNGGPFQVKVIRQLLWIDGVRYELREIFGIGSSSAEGFDD 338

Query: 320 NDSGKECVICMTEPKDTAVLPCRHMCMCSECAKELKLQSNKCPICRQPIEELIEIKINNS 379
           ND+GKECVICMTEPKDTAVLPCRH+CMCSECAKEL+LQSNKCPICRQPIEELIEI+INNS
Sbjct: 339 NDTGKECVICMTEPKDTAVLPCRHLCMCSECAKELRLQSNKCPICRQPIEELIEIRINNS 398

Query: 380 NQ 382
           +Q
Sbjct: 399 DQ 400

[Close]

BLAST of Carg17399 vs. TrEMBL
Match: tr|A0A0A0LAF7|A0A0A0LAF7_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G150050 PE=4 SV=1)

HSP 1 Score: 579.3 bits (1492), Expect = 6.2e-162
Identity = 274/302 (90.73%), Postives = 290/302 (96.03%), Query Frame = 0


Query: 80  YFSGGYNSCNYGNSSMGRFNFHPHYANQSNGWSQFRPVMVPPFLPPPSLPFVEHRQAKKV 139
           YFSGGYNSCNYGNSSMGRFNF+P+YANQSNGWSQ RP M PP LPPP LP VEHRQAKKV
Sbjct: 97  YFSGGYNSCNYGNSSMGRFNFYPYYANQSNGWSQVRPPMGPPLLPPPPLPIVEHRQAKKV 156

Query: 140 RNDVNVHKDTLRIEVDEQNPDQHLVSFVFDALYDGSITILFFAKEEPNCRFVPIYPDALK 199
           RNDVNVHKDTL+IEVDEQNPD HLVSFVFDALYDGSITILFFAKEEPNCRFVP+YPDA K
Sbjct: 157 RNDVNVHKDTLKIEVDEQNPDHHLVSFVFDALYDGSITILFFAKEEPNCRFVPVYPDAFK 216

Query: 200 PVKIPFQKGPAQKFFQPVGTGFDLGFFELDDLSKPSPSEDVFPLVISAETCSPSQSNDER 259
           PVKIPFQKGPAQKFFQPVGTGFDLGFF+LDDLSKPSP+ED FPLVISAETCSPSQS+DER
Sbjct: 217 PVKIPFQKGPAQKFFQPVGTGFDLGFFDLDDLSKPSPAEDTFPLVISAETCSPSQSDDER 276

Query: 260 IGEPQPDNSHMQITQAVLEKKNGNPFQVKVIRQLLWIDGMRYELREIFGIGSSSSEGFDN 319
           IGEP  DNSHMQITQAVLEKKNG PFQV+VIRQLLWIDG+RYELREIFGIGSSS+EGFD+
Sbjct: 277 IGEPHRDNSHMQITQAVLEKKNGGPFQVRVIRQLLWIDGVRYELREIFGIGSSSAEGFDD 336

Query: 320 NDSGKECVICMTEPKDTAVLPCRHMCMCSECAKELKLQSNKCPICRQPIEELIEIKINNS 379
           ND+GKECVICMTEPKDTAVLPCRH+CMCSECAKEL+LQSNKCPICRQPIEELIEI+INNS
Sbjct: 337 NDTGKECVICMTEPKDTAVLPCRHLCMCSECAKELRLQSNKCPICRQPIEELIEIRINNS 396

Query: 380 NQ 382
           +Q
Sbjct: 397 DQ 398

[Close]

BLAST of Carg17399 vs. TrEMBL
Match: tr|A0A2P5FWW5|A0A2P5FWW5_9ROSA (43kDa postsynaptic protein OS=Trema orientalis OX=63057 GN=TorRG33x02_020620 PE=4 SV=1)

HSP 1 Score: 460.3 bits (1183), Expect = 4.2e-126
Identity = 225/308 (73.05%), Postives = 252/308 (81.82%), Query Frame = 0


Query: 80  YFSGGYNSCNYGNSSMGRFNFHPHYANQSNGWSQFRPVMV-----PPFLPPPSLPFVEHR 139
           YF G Y  CN+ NS MGR+N+ P YANQ N W   RP  V     PP   PP  P+VEH+
Sbjct: 88  YFHGPYGPCNHPNSMMGRYNYQPFYANQPNWWPPMRPPPVGQAPQPPQATPP--PYVEHQ 147

Query: 140 QAKKVRNDVNVHKDTLRIEVDEQNPDQHLVSFVFDALYDGSITILFFAKEEPNCRFVPIY 199
            AKKVRNDVNVHKDTLR+EVDE NPD HLVSFVFDALYDGSITIL+FAKEEPNC+F+P Y
Sbjct: 148 NAKKVRNDVNVHKDTLRVEVDEHNPDHHLVSFVFDALYDGSITILYFAKEEPNCKFLPQY 207

Query: 200 PDALKPVKIPFQKGPAQKFFQPVGTGFDLGFFELDDLSKPSPSEDVFPLVISAETCSPSQ 259
           PDA  PV+IPFQKG  QKF QP GTG DLGFFELDDLSK SP EDVFPLVI A+TC+P  
Sbjct: 208 PDAFMPVRIPFQKGSGQKFRQPSGTGIDLGFFELDDLSKASPGEDVFPLVICAKTCAPPH 267

Query: 260 SNDERIGEPQPD-NSHMQITQAVLEKKNGNPFQVKVIRQLLWIDGMRYELREIFGIGSSS 319
           S D  + +P  D +S+MQITQAVLEK+N   FQVKVIRQ+LW+DG+RYELR+IFGI SSS
Sbjct: 268 SEDGHVNDPMQDASSNMQITQAVLEKRNRESFQVKVIRQILWVDGVRYELRDIFGIASSS 327

Query: 320 SEGFDNNDSGKECVICMTEPKDTAVLPCRHMCMCSECAKELKLQSNKCPICRQPIEELIE 379
            EGF++NDSGKECVICMTEPKDT V+PCRHMCMCSECAKEL+LQSNKCPICRQPIEEL+ 
Sbjct: 328 VEGFNDNDSGKECVICMTEPKDTFVVPCRHMCMCSECAKELRLQSNKCPICRQPIEELVG 387

Query: 380 IKINNSNQ 382
           IKINN +Q
Sbjct: 388 IKINNDDQ 393

[Close]

BLAST of Carg17399 vs. TrEMBL
Match: tr|A0A061EMC2|A0A061EMC2_THECC (RING/U-box superfamily protein isoform 1 OS=Theobroma cacao OX=3641 GN=TCM_020513 PE=4 SV=1)

HSP 1 Score: 459.5 bits (1181), Expect = 7.2e-126
Identity = 226/306 (73.86%), Postives = 262/306 (85.62%), Query Frame = 0


Query: 80  YFSGGYNSCNYGNSSMGRF--NFHPHYANQSNGWSQFR-PVMVPPFLPPPSLPFVEHRQA 139
           Y S  YNSC Y N  MGRF  ++HP+YANQ+NGW   R P +V P LPPP  P+VEH+ A
Sbjct: 82  YCSQPYNSCGYSNPMMGRFPVHYHPYYANQTNGWPAIRAPAVVAPALPPP--PYVEHQNA 141

Query: 140 KKVRNDVNVHKDTLRIEVDEQNPDQHLVSFVFDALYDGSITILFFAKEEPNCRFVPIYPD 199
           KKVRNDVNVHKDTL+IEVD+QNPD HLVSFVFDAL+DGSITI +FAKEE NCRFVP++P+
Sbjct: 142 KKVRNDVNVHKDTLKIEVDDQNPDHHLVSFVFDALFDGSITIFYFAKEEMNCRFVPLFPE 201

Query: 200 ALKPVKIPFQKGPAQKFFQPVGTGFDLGFFELDDLSKPSPSEDVFPLVISAETCSPSQSN 259
           A +PV++PFQKG  Q+F QP GTG DLGF+ELDDLSKPSP EDVFPLVISAETC    S+
Sbjct: 202 AYEPVRVPFQKGLGQRFQQPSGTGIDLGFYELDDLSKPSPGEDVFPLVISAETCVLPHSS 261

Query: 260 DERIGE-PQPDNSHMQITQAVLEKKNGNPFQVKVIRQLLWIDGMRYELREIFGIGSSSS- 319
           +E I +  Q  ++HMQITQAVLEK NGN FQVKVIRQ+LW+DG+RYELREI+GIGSS++ 
Sbjct: 262 NEHIDDSAQNTSAHMQITQAVLEKNNGNTFQVKVIRQILWVDGVRYELREIYGIGSSAAE 321

Query: 320 EGFDNNDSGKECVICMTEPKDTAVLPCRHMCMCSECAKELKLQSNKCPICRQPIEELIEI 379
           EGFD++D GKECVICMTEPKDTAVLPCRHMCMCSECAK L+LQSNKCPICRQPIEELIEI
Sbjct: 322 EGFDDSDPGKECVICMTEPKDTAVLPCRHMCMCSECAKALRLQSNKCPICRQPIEELIEI 381

Query: 380 KINNSN 381
           KIN+++
Sbjct: 382 KINSNH 385

[Close]

BLAST of Carg17399 vs. TrEMBL
Match: tr|A0A061EKZ3|A0A061EKZ3_THECC (RING/U-box superfamily protein isoform 2 (Fragment) OS=Theobroma cacao OX=3641 GN=TCM_020513 PE=4 SV=1)

HSP 1 Score: 459.5 bits (1181), Expect = 7.2e-126
Identity = 226/306 (73.86%), Postives = 262/306 (85.62%), Query Frame = 0


Query: 80  YFSGGYNSCNYGNSSMGRF--NFHPHYANQSNGWSQFR-PVMVPPFLPPPSLPFVEHRQA 139
           Y S  YNSC Y N  MGRF  ++HP+YANQ+NGW   R P +V P LPPP  P+VEH+ A
Sbjct: 62  YCSQPYNSCGYSNPMMGRFPVHYHPYYANQTNGWPAIRAPAVVAPALPPP--PYVEHQNA 121

Query: 140 KKVRNDVNVHKDTLRIEVDEQNPDQHLVSFVFDALYDGSITILFFAKEEPNCRFVPIYPD 199
           KKVRNDVNVHKDTL+IEVD+QNPD HLVSFVFDAL+DGSITI +FAKEE NCRFVP++P+
Sbjct: 122 KKVRNDVNVHKDTLKIEVDDQNPDHHLVSFVFDALFDGSITIFYFAKEEMNCRFVPLFPE 181

Query: 200 ALKPVKIPFQKGPAQKFFQPVGTGFDLGFFELDDLSKPSPSEDVFPLVISAETCSPSQSN 259
           A +PV++PFQKG  Q+F QP GTG DLGF+ELDDLSKPSP EDVFPLVISAETC    S+
Sbjct: 182 AYEPVRVPFQKGLGQRFQQPSGTGIDLGFYELDDLSKPSPGEDVFPLVISAETCVLPHSS 241

Query: 260 DERIGE-PQPDNSHMQITQAVLEKKNGNPFQVKVIRQLLWIDGMRYELREIFGIGSSSS- 319
           +E I +  Q  ++HMQITQAVLEK NGN FQVKVIRQ+LW+DG+RYELREI+GIGSS++ 
Sbjct: 242 NEHIDDSAQNTSAHMQITQAVLEKNNGNTFQVKVIRQILWVDGVRYELREIYGIGSSAAE 301

Query: 320 EGFDNNDSGKECVICMTEPKDTAVLPCRHMCMCSECAKELKLQSNKCPICRQPIEELIEI 379
           EGFD++D GKECVICMTEPKDTAVLPCRHMCMCSECAK L+LQSNKCPICRQPIEELIEI
Sbjct: 302 EGFDDSDPGKECVICMTEPKDTAVLPCRHMCMCSECAKALRLQSNKCPICRQPIEELIEI 361

Query: 380 KINNSN 381
           KIN+++
Sbjct: 362 KINSNH 365

The following BLAST results are available for this feature:

BLAST of Carg17399 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022936869.1	2.5e-175	99.34	probable E3 ubiquitin-protein ligase LUL4 [Cucurbita moschata]	[more]
XP_023539072.1	8.2e-174	98.34	probable E3 ubiquitin-protein ligase LUL4 [Cucurbita pepo subsp. pepo]	[more]
XP_022973667.1	3.8e-171	97.02	probable E3 ubiquitin-protein ligase LUL4 [Cucurbita maxima]	[more]
XP_022975424.1	7.9e-169	95.75	probable E3 ubiquitin-protein ligase LUL4 [Cucurbita maxima]	[more]
XP_022138033.1	1.3e-163	91.72	probable E3 ubiquitin-protein ligase LUL4 [Momordica charantia]	[more]

BLAST of Carg17399 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G06140.1	5.1e-93	60.28	RING/U-box superfamily protein	[more]
AT5G19080.1	1.7e-72	51.69	RING/U-box superfamily protein	[more]
AT3G09770.1	3.9e-69	48.05	RING/U-box superfamily protein	[more]
AT3G53410.1	1.1e-63	45.85	RING/U-box superfamily protein	[more]
AT5G03200.1	8.2e-59	45.91	RING/U-box superfamily protein	[more]

BLAST of Carg17399 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q8LA32\|LUL4_ARATH	9.1e-92	60.28	Probable E3 ubiquitin-protein ligase LUL4 OS=Arabidopsis thaliana OX=3702 GN=LUL...	[more]
sp\|Q84ME1\|LUL3_ARATH	3.1e-71	51.69	Probable E3 ubiquitin-protein ligase LUL3 OS=Arabidopsis thaliana OX=3702 GN=LUL...	[more]
sp\|Q9S752\|LOFG2_ARATH	7.0e-68	48.05	Probable E3 ubiquitin-protein ligase LOG2 OS=Arabidopsis thaliana OX=3702 GN=LOG...	[more]
sp\|Q9LFH6\|LUL2_ARATH	2.0e-62	45.85	Probable E3 ubiquitin-protein ligase LUL2 OS=Arabidopsis thaliana OX=3702 GN=LUL...	[more]
sp\|Q9LYW5\|LUL1_ARATH	1.5e-57	45.91	Probable E3 ubiquitin-protein ligase LUL1 OS=Arabidopsis thaliana OX=3702 GN=LUL...	[more]

BLAST of Carg17399 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3AXS8\|A0A1S3AXS8_CUCME	6.2e-162	90.73	probable E3 ubiquitin-protein ligase LUL4 OS=Cucumis melo OX=3656 GN=LOC10348374...	[more]
tr\|A0A0A0LAF7\|A0A0A0LAF7_CUCSA	6.2e-162	90.73	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G150050 PE=4 SV=1	[more]
tr\|A0A2P5FWW5\|A0A2P5FWW5_9ROSA	4.2e-126	73.05	43kDa postsynaptic protein OS=Trema orientalis OX=63057 GN=TorRG33x02_020620 PE=...	[more]
tr\|A0A061EMC2\|A0A061EMC2_THECC	7.2e-126	73.86	RING/U-box superfamily protein isoform 1 OS=Theobroma cacao OX=3641 GN=TCM_02051...	[more]
tr\|A0A061EKZ3\|A0A061EKZ3_THECC	7.2e-126	73.86	RING/U-box superfamily protein isoform 2 (Fragment) OS=Theobroma cacao OX=3641 G...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR013083	Znf_RING/FYVE/PHD
IPR001841	Znf_RING

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg17399-RA	Carg17399-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001841	Zinc finger, RING-type	SMART	SM00184	ring_2	coord: 326..364 e-value: 2.9E-4 score: 30.2
IPR001841	Zinc finger, RING-type	PROSITE	PS50089	ZF_RING_2	coord: 326..365 score: 11.648
None	No IPR available	PFAM	PF13920	zf-C3HC4_3	coord: 324..370 e-value: 2.2E-17 score: 62.5
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..69
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..31
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 32..69
None	No IPR available	PANTHER	PTHR22996	MAHOGUNIN	coord: 1..381
None	No IPR available	PANTHER	PTHR22996:SF4	E3 UBIQUITIN-PROTEIN LIGASE LUL3-RELATED	coord: 1..381
None	No IPR available	CDD	cd16789	mRING-HC-C3HC5_MGRN1_like---blasttree	coord: 325..365 e-value: 1.31077E-26 score: 99.3402
None	No IPR available	SUPERFAMILY	SSF57850	RING/U-box	coord: 325..371
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	G3DSA:3.30.40.10		coord: 311..381 e-value: 3.9E-18 score: 66.5

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg17399	Cla021663	Watermelon (97103) v1	carwmB0603
Carg17399	Csa3G150050	Cucumber (Chinese Long) v2	carcuB0633
Carg17399	MELO3C006565	Melon (DHL92) v3.5.1	carmeB0610
Carg17399	ClCG05G005430	Watermelon (Charleston Gray)	carwcgB0588
Carg17399	CSPI03G13500	Wild cucumber (PI 183967)	carcpiB0639
Carg17399	Cucsa.253990	Cucumber (Gy14) v1	carcgyB0681
Carg17399	CmaCh06G014340	Cucurbita maxima (Rimu)	carcmaB0849
Carg17399	CmaCh14G016760	Cucurbita maxima (Rimu)	carcmaB0847
Carg17399	CmoCh06G014370	Cucurbita moschata (Rifu)	carcmoB0825
Carg17399	CmoCh14G017210	Cucurbita moschata (Rifu)	carcmoB0823
Carg17399	Lsi05G014560	Bottle gourd (USVL1VR-Ls)	carlsiB552
Carg17399	Cp4.1LG03g11050	Cucurbita pepo (Zucchini)	carcpeB0860
Carg17399	Cp4.1LG08g04470	Cucurbita pepo (Zucchini)	carcpeB0861
Carg17399	CsGy3G013620	Cucumber (Gy14) v2	carcgybB0605
Carg17399	MELO3C006565.2	Melon (DHL92) v3.6.1	carmedB0616
Carg17399	CsaV3_3G013720	Cucumber (Chinese Long) v3	carcucB0640
Carg17399	Cla97C05G086770	Watermelon (97103) v2	carwmbB0631
Carg17399	Bhi01G000632	Wax gourd	carwgoB0722

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Carg17399	Carg23823	Silver-seed gourd	carcarB258

The following block(s) are covering this gene:


Gene	Organism	Block
Carg17399	Silver-seed gourd	carcarB083
Carg17399	Silver-seed gourd	carcarB347
Carg17399	Cucurbita maxima (Rimu)	carcmaB0848
Carg17399	Cucurbita maxima (Rimu)	carcmaB0850
Carg17399	Cucurbita moschata (Rifu)	carcmoB0824
Carg17399	Cucurbita moschata (Rifu)	carcmoB0826
Carg17399	Cucurbita pepo (Zucchini)	carcpeB0857
Carg17399	Cucurbita pepo (Zucchini)	carcpeB0858
Carg17399	Bottle gourd (USVL1VR-Ls)	carlsiB550
Carg17399	Melon (DHL92) v3.5.1	carmeB0609
Carg17399	Melon (DHL92) v3.6.1	carmedB0615
Carg17399	Watermelon (Charleston Gray)	carwcgB0589
Carg17399	Watermelon (97103) v1	carwmB0604
Carg17399	Watermelon (97103) v2	carwmbB0632
Carg17399	Wax gourd	carwgoB0719