Carg17341 (gene) Silver-seed gourd

Overview
NameCarg17341
Typegene
OrganismCucurbita argyrosperma (Silver-seed gourd)
DescriptionPentatricopeptide repeat-containing protein
LocationCucurbita_argyrosperma_scaffold_092 : 105673 .. 108372 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTGTATTTCAGGTGCAGGACAAATCTATTGTCTTGCTTTGAAGTTCAAAAACCCTTTTAGTTTTTCTGTTAAACTTTTGTCCTCGTGCATTGAGAATTCTTCTCGAACAAACGGAAATGGGGCCCCTGTTTCGGATGGTTGTAATCTGGTGTCGTCGGTGAAGAACGAGGACAAGAGACTAATTGTAGATAGTGTATGCCAAATTTTGGAGGCTGGTCCTTGGAGACCTTCTGTTGAGAATGCTTTAGCCGAGCTCGACGTTAAACCGAATCCAGAATTGGTAATTGGAGTCTTAAGAAGACTAAAGGATGTAAACGTTGCAGTAAATTACTTTCGATGGTCGGAGAGAGTAACAGACCAAGCATCTTGCCCCGAAGCATATAATTCGCTTCTAATGGTTATGGCTAGAACTCGAAAGTTCGATTGCTTGGAACAAACATTGGAAGAAATGAGTATAGCAGGCTTTGGCCCCTCGAACAACACATGTATTGAAATTGTACTGAGCCTTATTAAGTCACACAAGCTTAGAGAAGCTTATACGTTTATACAAACTATGAGAAAGTTCAAATTCCGTCCAGCCTTTTCGGCATACACGACATTGATCGGTGCACTATCTGCATCTAATGATTCCGATTCCATGCTCACCTTATTTCATCAAATGCAGGAGCTTGGCTATGAAGTTAATGTTCATTTATTCACGACTCTCATTCGTGTGTTTGCTCGTGAGGGTCGAGTCGACGCTGCACTTTCTATTTTGGATGAGATGAAAATGAACGCTTTTGAACCGGATGTCGTTCTTTACAACGTTTGTATAGACTGCTTCGGGAAGGCGGGGAAGGTGGATATGGCATGGAAATTCTTTCATGAAATGAAAGCTAATGGTTTGATCCTTGATGATGTAACTTATACTAGCATGATAGGAGTTCTTTGTAAAGCTGGTAGGCTGGATGAAGCTATTGAGCTATTTGAACATATGGATCAAAACAAGCAAGTGCCTTGTGCTTATGCATACAATACAATGATCATGGGTTATGGTATGGCTGGGAAGTTCGATGAAGCGTACAGTCTACTCGAGAGACAGAGGAGAAAGGGGTGCATTCCGAGTGTCGTCGCTTATAATTGCATTCTTACTTGTCTGGGGAGGAGGGGGCGGGTAGCCGAGGCGTTAAAAGTTTTCGAAGAGATGAAGAAAGATGCCATTCCGAATCTTTCGACGTATAATATTGTGATTGATATGCTCTGTAAGTCTGGAAAACTCGAGACAGCTTTGGTTGTTCGAGATGCCATGAAAGAAGCTGGGTTGTTCCCTAACGTTATGACCGTAAACATAATGGTTGACAGATTGTGTAAAGCCCAAAGACTCGATGATGCTTGTTCGATTTTCGAAGGATTGGATCATAAAGCTTGCACGCCTAATACGGTAACGTATTGTTCTCTTATAGATGGATTGGGTAAGCATGGGAGAGTTGATGAGGCCTACAAGCTGTATGAAAAGATGCTGGATTCCGACCAGATCCCGAATGCTGTTGTGTTTACATCTCTAATAAGGAACTTTTTCAGGTGTGGAAGGAAGGAGGACGGCCACAAGATATATAACGAAATGATACGTCTCGGATGTTCACCCGACCTGATGCTTCTTAATACCTACATGGACTGTGTTTTTAAAGCTGGAGAAACCGAGAAGGGTAGAGCTTTGTTTCAGGAGATTAAGGCTCAAGGATTCATTCCCGATGCGAGGAGCTATTCGGTCCTAATTCATGGCTTGGTGAAAGCTGGTTTCGCGCGTGAAACTTACGAGTTGTTCTACACGATGAAGGAACAAGGTTGCGTTCTGGATACTCGTGCATATAACACCGTTATCGACGGGTTCTGCAAGTCGGGCAAGGTAAACAAAGCTTACCAACTGCTGGAGGAAATGAAGACGAAGGGTCACGAACCTACCGTTGTTACGTACGGTTCGGTTATCGATGGGCTTGCAAAGATCGATCGGCTTGATGAAGCATATATGCTCTTTGAAGAAGCAAAGTCGAAAGGAGTCGAACTGAACGTTATCATATATAGCAGTCTAATCGATGGGTTCGGGAAAGTGGGTCGAATCGATGAAGCGTACCTGATCATGGAAGAGTTGATGCAGAAAGGTTTGACGCCTAATGTATACACATGGAATTGCTTGCTTGATGCATTGGTGAAAGCAGAGGAAATCAGTGAAGCTCTTGTTTGCTTTCAGTCTATGAAAGACTTGAAATGTACGCCTAATTATATAACTTACAGCATTCTAATTCATGGTCTATGTAAGATTAGAAAGTTCAACAAGGCATTTGTGTTCTGGCAAGAGATGCAGAAGCAAGGCTTAAAGCCGAACGTATTCACGTACACCACCATGATCTTGGGGCTTGCTAAGGCTGGAAACGTCGTAGAGGCGAACGCTCTTTTTGAGAAGTTTAAGGAAAAGGGTGGCGTGCCTGATTCTGCTACTTACAATGCTATAATTGTTGGGTTGAGCAATGCTAACAGGGTGTTGGATGCTTATCGACTTTTTGAGGAAACTCGATCGAAAGGTTGTAGTATTAACACGAAAACTTGTGTTGTTCTGTTAGATTCACTGCATAAGGCTGAATGCATTGAGCAGGCTGCTATTGTTGGCACTGTATTAAAAGAAACTGCGAAGGCTCAGCACGCTGCGAGATCGTGGACATAG

mRNA sequence

ATGTGTATTTCAGGTGCAGGACAAATCTATTGTCTTGCTTTGAAGTTCAAAAACCCTTTTAGTTTTTCTGTTAAACTTTTGTCCTCGTGCATTGAGAATTCTTCTCGAACAAACGGAAATGGGGCCCCTGTTTCGGATGGTTGTAATCTGGTGTCGTCGGTGAAGAACGAGGACAAGAGACTAATTGTAGATAGTGTATGCCAAATTTTGGAGGCTGGTCCTTGGAGACCTTCTGTTGAGAATGCTTTAGCCGAGCTCGACGTTAAACCGAATCCAGAATTGGTAATTGGAGTCTTAAGAAGACTAAAGGATGTAAACGTTGCAGTAAATTACTTTCGATGGTCGGAGAGAGTAACAGACCAAGCATCTTGCCCCGAAGCATATAATTCGCTTCTAATGGTTATGGCTAGAACTCGAAAGTTCGATTGCTTGGAACAAACATTGGAAGAAATGAGTATAGCAGGCTTTGGCCCCTCGAACAACACATGTATTGAAATTGTACTGAGCCTTATTAAGTCACACAAGCTTAGAGAAGCTTATACGTTTATACAAACTATGAGAAAGTTCAAATTCCGTCCAGCCTTTTCGGCATACACGACATTGATCGGTGCACTATCTGCATCTAATGATTCCGATTCCATGCTCACCTTATTTCATCAAATGCAGGAGCTTGGCTATGAAGTTAATGTTCATTTATTCACGACTCTCATTCGTGTGTTTGCTCGTGAGGGTCGAGTCGACGCTGCACTTTCTATTTTGGATGAGATGAAAATGAACGCTTTTGAACCGGATGTCGTTCTTTACAACGTTTGTATAGACTGCTTCGGGAAGGCGGGGAAGGTGGATATGGCATGGAAATTCTTTCATGAAATGAAAGCTAATGGTTTGATCCTTGATGATGTAACTTATACTAGCATGATAGGAGTTCTTTGTAAAGCTGGTAGGCTGGATGAAGCTATTGAGCTATTTGAACATATGGATCAAAACAAGCAAGTGCCTTGTGCTTATGCATACAATACAATGATCATGGGTTATGGTATGGCTGGGAAGTTCGATGAAGCGTACAGTCTACTCGAGAGACAGAGGAGAAAGGGGTGCATTCCGAGTGTCGTCGCTTATAATTGCATTCTTACTTGTCTGGGGAGGAGGGGGCGGGTAGCCGAGGCGTTAAAAGTTTTCGAAGAGATGAAGAAAGATGCCATTCCGAATCTTTCGACGTATAATATTGTGATTGATATGCTCTGTAAGTCTGGAAAACTCGAGACAGCTTTGGTTGTTCGAGATGCCATGAAAGAAGCTGGGTTGTTCCCTAACGTTATGACCGTAAACATAATGGTTGACAGATTGTGTAAAGCCCAAAGACTCGATGATGCTTGTTCGATTTTCGAAGGATTGGATCATAAAGCTTGCACGCCTAATACGGTAACGTATTGTTCTCTTATAGATGGATTGGGTAAGCATGGGAGAGTTGATGAGGCCTACAAGCTGTATGAAAAGATGCTGGATTCCGACCAGATCCCGAATGCTGTTGTGTTTACATCTCTAATAAGGAACTTTTTCAGGTGTGGAAGGAAGGAGGACGGCCACAAGATATATAACGAAATGATACGTCTCGGATGTTCACCCGACCTGATGCTTCTTAATACCTACATGGACTGTGTTTTTAAAGCTGGAGAAACCGAGAAGGGTAGAGCTTTGTTTCAGGAGATTAAGGCTCAAGGATTCATTCCCGATGCGAGGAGCTATTCGGTCCTAATTCATGGCTTGGTGAAAGCTGGTTTCGCGCGTGAAACTTACGAGTTGTTCTACACGATGAAGGAACAAGGTTGCGTTCTGGATACTCGTGCATATAACACCGTTATCGACGGGTTCTGCAAGTCGGGCAAGGTAAACAAAGCTTACCAACTGCTGGAGGAAATGAAGACGAAGGGTCACGAACCTACCGTTGTTACGTACGGTTCGGTTATCGATGGGCTTGCAAAGATCGATCGGCTTGATGAAGCATATATGCTCTTTGAAGAAGCAAAGTCGAAAGGAGTCGAACTGAACGTTATCATATATAGCAGTCTAATCGATGGGTTCGGGAAAGTGGGTCGAATCGATGAAGCGTACCTGATCATGGAAGAGTTGATGCAGAAAGGTTTGACGCCTAATGTATACACATGGAATTGCTTGCTTGATGCATTGGTGAAAGCAGAGGAAATCAGTGAAGCTCTTGTTTGCTTTCAGTCTATGAAAGACTTGAAATGTACGCCTAATTATATAACTTACAGCATTCTAATTCATGGTCTATGTAAGATTAGAAAGTTCAACAAGGCATTTGTGTTCTGGCAAGAGATGCAGAAGCAAGGCTTAAAGCCGAACGTATTCACGTACACCACCATGATCTTGGGGCTTGCTAAGGCTGGAAACGTCGTAGAGGCGAACGCTCTTTTTGAGAAGTTTAAGGAAAAGGGTGGCGTGCCTGATTCTGCTACTTACAATGCTATAATTGTTGGGTTGAGCAATGCTAACAGGGTGTTGGATGCTTATCGACTTTTTGAGGAAACTCGATCGAAAGGTTGTAGTATTAACACGAAAACTTGTGTTGTTCTGTTAGATTCACTGCATAAGGCTGAATGCATTGAGCAGGCTGCTATTGTTGGCACTGTATTAAAAGAAACTGCGAAGGCTCAGCACGCTGCGAGATCGTGGACATAG

Coding sequence (CDS)

ATGTGTATTTCAGGTGCAGGACAAATCTATTGTCTTGCTTTGAAGTTCAAAAACCCTTTTAGTTTTTCTGTTAAACTTTTGTCCTCGTGCATTGAGAATTCTTCTCGAACAAACGGAAATGGGGCCCCTGTTTCGGATGGTTGTAATCTGGTGTCGTCGGTGAAGAACGAGGACAAGAGACTAATTGTAGATAGTGTATGCCAAATTTTGGAGGCTGGTCCTTGGAGACCTTCTGTTGAGAATGCTTTAGCCGAGCTCGACGTTAAACCGAATCCAGAATTGGTAATTGGAGTCTTAAGAAGACTAAAGGATGTAAACGTTGCAGTAAATTACTTTCGATGGTCGGAGAGAGTAACAGACCAAGCATCTTGCCCCGAAGCATATAATTCGCTTCTAATGGTTATGGCTAGAACTCGAAAGTTCGATTGCTTGGAACAAACATTGGAAGAAATGAGTATAGCAGGCTTTGGCCCCTCGAACAACACATGTATTGAAATTGTACTGAGCCTTATTAAGTCACACAAGCTTAGAGAAGCTTATACGTTTATACAAACTATGAGAAAGTTCAAATTCCGTCCAGCCTTTTCGGCATACACGACATTGATCGGTGCACTATCTGCATCTAATGATTCCGATTCCATGCTCACCTTATTTCATCAAATGCAGGAGCTTGGCTATGAAGTTAATGTTCATTTATTCACGACTCTCATTCGTGTGTTTGCTCGTGAGGGTCGAGTCGACGCTGCACTTTCTATTTTGGATGAGATGAAAATGAACGCTTTTGAACCGGATGTCGTTCTTTACAACGTTTGTATAGACTGCTTCGGGAAGGCGGGGAAGGTGGATATGGCATGGAAATTCTTTCATGAAATGAAAGCTAATGGTTTGATCCTTGATGATGTAACTTATACTAGCATGATAGGAGTTCTTTGTAAAGCTGGTAGGCTGGATGAAGCTATTGAGCTATTTGAACATATGGATCAAAACAAGCAAGTGCCTTGTGCTTATGCATACAATACAATGATCATGGGTTATGGTATGGCTGGGAAGTTCGATGAAGCGTACAGTCTACTCGAGAGACAGAGGAGAAAGGGGTGCATTCCGAGTGTCGTCGCTTATAATTGCATTCTTACTTGTCTGGGGAGGAGGGGGCGGGTAGCCGAGGCGTTAAAAGTTTTCGAAGAGATGAAGAAAGATGCCATTCCGAATCTTTCGACGTATAATATTGTGATTGATATGCTCTGTAAGTCTGGAAAACTCGAGACAGCTTTGGTTGTTCGAGATGCCATGAAAGAAGCTGGGTTGTTCCCTAACGTTATGACCGTAAACATAATGGTTGACAGATTGTGTAAAGCCCAAAGACTCGATGATGCTTGTTCGATTTTCGAAGGATTGGATCATAAAGCTTGCACGCCTAATACGGTAACGTATTGTTCTCTTATAGATGGATTGGGTAAGCATGGGAGAGTTGATGAGGCCTACAAGCTGTATGAAAAGATGCTGGATTCCGACCAGATCCCGAATGCTGTTGTGTTTACATCTCTAATAAGGAACTTTTTCAGGTGTGGAAGGAAGGAGGACGGCCACAAGATATATAACGAAATGATACGTCTCGGATGTTCACCCGACCTGATGCTTCTTAATACCTACATGGACTGTGTTTTTAAAGCTGGAGAAACCGAGAAGGGTAGAGCTTTGTTTCAGGAGATTAAGGCTCAAGGATTCATTCCCGATGCGAGGAGCTATTCGGTCCTAATTCATGGCTTGGTGAAAGCTGGTTTCGCGCGTGAAACTTACGAGTTGTTCTACACGATGAAGGAACAAGGTTGCGTTCTGGATACTCGTGCATATAACACCGTTATCGACGGGTTCTGCAAGTCGGGCAAGGTAAACAAAGCTTACCAACTGCTGGAGGAAATGAAGACGAAGGGTCACGAACCTACCGTTGTTACGTACGGTTCGGTTATCGATGGGCTTGCAAAGATCGATCGGCTTGATGAAGCATATATGCTCTTTGAAGAAGCAAAGTCGAAAGGAGTCGAACTGAACGTTATCATATATAGCAGTCTAATCGATGGGTTCGGGAAAGTGGGTCGAATCGATGAAGCGTACCTGATCATGGAAGAGTTGATGCAGAAAGGTTTGACGCCTAATGTATACACATGGAATTGCTTGCTTGATGCATTGGTGAAAGCAGAGGAAATCAGTGAAGCTCTTGTTTGCTTTCAGTCTATGAAAGACTTGAAATGTACGCCTAATTATATAACTTACAGCATTCTAATTCATGGTCTATGTAAGATTAGAAAGTTCAACAAGGCATTTGTGTTCTGGCAAGAGATGCAGAAGCAAGGCTTAAAGCCGAACGTATTCACGTACACCACCATGATCTTGGGGCTTGCTAAGGCTGGAAACGTCGTAGAGGCGAACGCTCTTTTTGAGAAGTTTAAGGAAAAGGGTGGCGTGCCTGATTCTGCTACTTACAATGCTATAATTGTTGGGTTGAGCAATGCTAACAGGGTGTTGGATGCTTATCGACTTTTTGAGGAAACTCGATCGAAAGGTTGTAGTATTAACACGAAAACTTGTGTTGTTCTGTTAGATTCACTGCATAAGGCTGAATGCATTGAGCAGGCTGCTATTGTTGGCACTGTATTAAAAGAAACTGCGAAGGCTCAGCACGCTGCGAGATCGTGGACATAG

Protein sequence

MCISGAGQIYCLALKFKNPFSFSVKLLSSCIENSSRTNGNGAPVSDGCNLVSSVKNEDKRLIVDSVCQILEAGPWRPSVENALAELDVKPNPELVIGVLRRLKDVNVAVNYFRWSERVTDQASCPEAYNSLLMVMARTRKFDCLEQTLEEMSIAGFGPSNNTCIEIVLSLIKSHKLREAYTFIQTMRKFKFRPAFSAYTTLIGALSASNDSDSMLTLFHQMQELGYEVNVHLFTTLIRVFAREGRVDAALSILDEMKMNAFEPDVVLYNVCIDCFGKAGKVDMAWKFFHEMKANGLILDDVTYTSMIGVLCKAGRLDEAIELFEHMDQNKQVPCAYAYNTMIMGYGMAGKFDEAYSLLERQRRKGCIPSVVAYNCILTCLGRRGRVAEALKVFEEMKKDAIPNLSTYNIVIDMLCKSGKLETALVVRDAMKEAGLFPNVMTVNIMVDRLCKAQRLDDACSIFEGLDHKACTPNTVTYCSLIDGLGKHGRVDEAYKLYEKMLDSDQIPNAVVFTSLIRNFFRCGRKEDGHKIYNEMIRLGCSPDLMLLNTYMDCVFKAGETEKGRALFQEIKAQGFIPDARSYSVLIHGLVKAGFARETYELFYTMKEQGCVLDTRAYNTVIDGFCKSGKVNKAYQLLEEMKTKGHEPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSKGVELNVIIYSSLIDGFGKVGRIDEAYLIMEELMQKGLTPNVYTWNCLLDALVKAEEISEALVCFQSMKDLKCTPNYITYSILIHGLCKIRKFNKAFVFWQEMQKQGLKPNVFTYTTMILGLAKAGNVVEANALFEKFKEKGGVPDSATYNAIIVGLSNANRVLDAYRLFEETRSKGCSINTKTCVVLLDSLHKAECIEQAAIVGTVLKETAKAQHAARSWT
Homology
[Close]
BLAST of Carg17341 vs. NCBI nr
Match: XP_022937270.1 (pentatricopeptide repeat-containing protein At3g06920 [Cucurbita moschata])

HSP 1 Score: 374.4 bits (960), Expect = 1.1e-99
Identity = 186/186 (100.00%), Postives = 186/186 (100.00%), Query Frame = 0 

Query: 5   GAGQIYCLALKFKNPFSFSVKLLSSCIENSSRTNGNGAPVSDGCNLVSSVKNEDKRLIVD 64
           GAGQIYCLALKFKNPFSFSVKLLSSCIENSSRTNGNGAPVSDGCNLVSSVKNEDKRLIVD
Sbjct: 9   GAGQIYCLALKFKNPFSFSVKLLSSCIENSSRTNGNGAPVSDGCNLVSSVKNEDKRLIVD 68

Query: 65  SVCQILEAGPWRPSVENALAELDVKPNPELVIGVLRRLKDVNVAVNYFRWSERVTDQASC 124
           SVCQILEAGPWRPSVENALAELDVKPNPELVIGVLRRLKDVNVAVNYFRWSERVTDQASC
Sbjct: 69  SVCQILEAGPWRPSVENALAELDVKPNPELVIGVLRRLKDVNVAVNYFRWSERVTDQASC 128

Query: 125 PEAYNSLLMVMARTRKFDCLEQTLEEMSIAGFGPSNNTCIEIVLSLIKSHKLREAYTFIQ 184
           PEAYNSLLMVMARTRKFDCLEQTLEEMSIAGFGPSNNTCIEIVLSLIKSHKLREAYTFIQ
Sbjct: 129 PEAYNSLLMVMARTRKFDCLEQTLEEMSIAGFGPSNNTCIEIVLSLIKSHKLREAYTFIQ 188

Query: 185 TMRKFK 191
           TMRKFK
Sbjct: 189 TMRKFK 194

[Close]
BLAST of Carg17341 vs. NCBI nr
Match: XP_023540644.1 (pentatricopeptide repeat-containing protein At3g06920 [Cucurbita pepo subsp. pepo] >XP_023540645.1 pentatricopeptide repeat-containing protein At3g06920 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 352.1 bits (902), Expect = 5.8e-93
Identity = 174/181 (96.13%), Postives = 176/181 (97.24%), Query Frame = 0 

Query: 5   GAGQIYCLALKFKNPFSFSVKLLSSCIENSSRTNGNGAPVSDGCNLVSSVKNEDKRLIVD 64
           GAGQIYCLALKFK PFSFSVKLLSSCIENSSRTNGNGAPV DGCNLV S KNEDKRLIVD
Sbjct: 9   GAGQIYCLALKFKTPFSFSVKLLSSCIENSSRTNGNGAPVLDGCNLVPSAKNEDKRLIVD 68

Query: 65  SVCQILEAGPWRPSVENALAELDVKPNPELVIGVLRRLKDVNVAVNYFRWSERVTDQASC 124
           SVCQILEAGPWRPSVENALAELDVKPNPELVIGVLRRLKDVNVAVNYFRWSERVTDQASC
Sbjct: 69  SVCQILEAGPWRPSVENALAELDVKPNPELVIGVLRRLKDVNVAVNYFRWSERVTDQASC 128

Query: 125 PEAYNSLLMVMARTRKFDCLEQTLEEMSIAGFGPSNNTCIEIVLSLIKSHKLREAYTFIQ 184
           PEAYNSLLMV+ARTRKFDCLEQ LEEMSIAGFGPSNNTCIEIVLSLIKSHKLREAYTF+Q
Sbjct: 129 PEAYNSLLMVLARTRKFDCLEQILEEMSIAGFGPSNNTCIEIVLSLIKSHKLREAYTFMQ 188

Query: 185 T 186
           T
Sbjct: 189 T 189

[Close]
BLAST of Carg17341 vs. NCBI nr
Match: XP_022973661.1 (pentatricopeptide repeat-containing protein At3g06920-like [Cucurbita maxima] >XP_022975162.1 pentatricopeptide repeat-containing protein At3g06920-like isoform X1 [Cucurbita maxima] >XP_022975163.1 pentatricopeptide repeat-containing protein At3g06920-like isoform X2 [Cucurbita maxima])

HSP 1 Score: 350.5 bits (898), Expect = 1.7e-92
Identity = 172/179 (96.09%), Postives = 177/179 (98.88%), Query Frame = 0 

Query: 5   GAGQIYCLALKFKNPFSFSVKLLSSCIENSSRTNGNGAPVSDGCNLVSSVKNEDKRLIVD 64
           GAGQIYCLALKFKNPFSFSVKLLSSCIENSSRTNGNGAPVSDGCNLVSS KNEDKRLIVD
Sbjct: 9   GAGQIYCLALKFKNPFSFSVKLLSSCIENSSRTNGNGAPVSDGCNLVSSAKNEDKRLIVD 68

Query: 65  SVCQILEAGPWRPSVENALAELDVKPNPELVIGVLRRLKDVNVAVNYFRWSERVTDQASC 124
           SVCQILEAGPWRPSVENALAELDVKPNPELVIGVLRRLKDVNVAVNYFRW+ERVTDQASC
Sbjct: 69  SVCQILEAGPWRPSVENALAELDVKPNPELVIGVLRRLKDVNVAVNYFRWAERVTDQASC 128

Query: 125 PEAYNSLLMVMARTRKFDCLEQTLEEMSIAGFGPSNNTCIEIVLSLIKSHKLREAYTFI 184
           PEAYNSLLMVMARTRKF+CLEQ LEEMSIAGFGPSNNTCIEI+LSLIKSHKLREA+TF+
Sbjct: 129 PEAYNSLLMVMARTRKFNCLEQILEEMSIAGFGPSNNTCIEIILSLIKSHKLREAFTFM 187

[Close]
BLAST of Carg17341 vs. NCBI nr
Match: XP_022137955.1 (LOW QUALITY PROTEIN: pentatricopeptide repeat-containing protein At3g06920 [Momordica charantia])

HSP 1 Score: 265.8 bits (678), Expect = 5.4e-67
Identity = 135/184 (73.37%), Postives = 149/184 (80.98%), Query Frame = 0 

Query: 5   GAGQIYCLALKFKNPFSFSVKLLSSCIENSSRTNGNGAPVSDGCNLVSSVKNEDKRLIVD 64
           GA QIYCL LK    +S+ +K          +TNGNG PV D  N+VS  KNEDKR +VD
Sbjct: 9   GARQIYCLDLK----YSYHLKFF--------QTNGNGGPVLDSGNMVSPAKNEDKRQLVD 68

Query: 65  SVCQILEAGPWRPSVENALAELDVKPNPELVIGVLRRLKDVNVAVNYFRWSERVTDQASC 124
            VCQILE GPW  S+ENALA LD+KPNPELVIGVLRRLKDVNVAVNYFRW+ERVTDQA C
Sbjct: 69  GVCQILETGPWGSSLENALAXLDIKPNPELVIGVLRRLKDVNVAVNYFRWTERVTDQAHC 128

Query: 125 PEAYNSLLMVMARTRKFDCLEQTLEEMSIAGFGPSNNTCIEIVLSLIKSHKLREAYTFIQ 184
           PEAYNSLLMVMAR R F+CLEQ +EEMS AGFGPSNNTCIEIVL+L+KS KLREA+TFIQ
Sbjct: 129 PEAYNSLLMVMARXRXFNCLEQIVEEMSXAGFGPSNNTCIEIVLTLVKSQKLREAFTFIQ 180

Query: 185 TMRK 189
           TMRK
Sbjct: 189 TMRK 180

[Close]
BLAST of Carg17341 vs. NCBI nr
Match: XP_004134213.1 (PREDICTED: pentatricopeptide repeat-containing protein At3g06920 [Cucumis sativus] >KGN57112.1 hypothetical protein Csa_3G154350 [Cucumis sativus])

HSP 1 Score: 253.1 bits (645), Expect = 3.6e-63
Identity = 129/170 (75.88%), Postives = 142/170 (83.53%), Query Frame = 0 

Query: 5   GAGQIYCLALKFKNPFSFSVKLLSSCIENSSR-TNGNGAPVSDGCNLVSSVKNEDKRLIV 64
           GAGQI CL LK  NP  FSV+  SS I +SS+ TNGNG PV  G +L+ S KNE+KR ++
Sbjct: 9   GAGQINCLDLKCGNPIKFSVRFFSSWIGDSSQTTNGNGGPVPGGGDLLPSAKNENKRQVI 68

Query: 65  DSVCQILEAGPWRPSVENALAELDVKPNPELVIGVLRRLKDVNVAVNYFRWSERVTDQAS 124
           DSVCQILE GPW  SVEN LAELD+ PNPELVIGVLRRLKDVN AVNYFRW+ER+TD+A 
Sbjct: 69  DSVCQILETGPWGSSVENRLAELDLNPNPELVIGVLRRLKDVNNAVNYFRWAERLTDRAH 128

Query: 125 CPEAYNSLLMVMARTRKFDCLEQTLEEMSIAGFGPSNNTCIEIVLSLIKS 174
           C EAYNSLLMVMARTRKF+CLEQ LEEMSIAGFGPSNNTCIEIVLS IKS
Sbjct: 129 CREAYNSLLMVMARTRKFNCLEQILEEMSIAGFGPSNNTCIEIVLSFIKS 178

[Close]
BLAST of Carg17341 vs. TAIR10
Match: AT3G06920.1 (Tetratricopeptide repeat (TPR)-like superfamily protein)

HSP 1 Score: 181.4 bits (459), Expect = 2.4e-45
Identity = 85/134 (63.43%), Postives = 100/134 (74.63%), Query Frame = 0 

Query: 57  EDKRLIVDSVCQILEAGPWRPSVENALAELDVKPNPELVIGVLRRLKDVNVAVNYFRWSE 116
           E  R  V+ +C +LE GPW PS EN L+ L  KP PE VIGVLRRLKDVN A+ YFRW E
Sbjct: 30  EGNRQTVNDICNVLETGPWGPSAENTLSALSFKPQPEFVIGVLRRLKDVNRAIEYFRWYE 89

Query: 117 RVTDQASCPEAYNSLLMVMARTRKFDCLEQTLEEMSIAGFGPSNNTCIEIVLSLIKSHKL 176
           R T+   CPE+YNSLL+VMAR R FD L+Q L EMS+AGFGPS NTCIE+VL  +K++KL
Sbjct: 90  RRTELPHCPESYNSLLLVMARCRNFDALDQILGEMSVAGFGPSVNTCIEMVLGCVKANKL 149

Query: 177 REAYTFIQTMRKFK 191
           RE Y  +Q MRKFK
Sbjct: 150 REGYDVVQMMRKFK 163

[Close]
BLAST of Carg17341 vs. TAIR10
Match: AT5G15010.1 (Tetratricopeptide repeat (TPR)-like superfamily protein)

HSP 1 Score: 59.3 bits (142), Expect = 1.4e-08
Identity = 46/177 (25.99%), Postives = 83/177 (46.89%), Query Frame = 0 

Query: 22  FSVKLLSSCIENSSRTNGNGAPVSD---GCNLVSSVKNEDKRLIVDSVCQIL-EAGPWRP 81
           FS  +  S     +R+N      SD   GC++   + +ED    V  + +++ + G  R 
Sbjct: 57  FSTSIADSEQVGFTRSNIEKDDESDIDLGCSISDELVSED----VGKISKLVKDCGSDRK 116

Query: 82  SVENALAELDVKPNPELVIGVLRRLK-DVNVAVNYFRWSERVTDQASCPEAYNSLLMVMA 141
            + N L E DVKP+ ELV+ +L R++ D   A  +F W+ +          Y+S++ ++ 
Sbjct: 117 ELRNKLEECDVKPSNELVVEILSRVRNDWETAFTFFVWAGKQQGYVRSVREYHSMISILG 176

Query: 142 RTRKFDCLEQTLEEMSIAGFGPS---NNTCIEIVLSLIKSHKLREAYTFIQTMRKFK 191
           + RKFD     ++EM    F PS   + T + ++      H + +A       ++FK
Sbjct: 177 KMRKFDTAWTLIDEM--RKFSPSLVNSQTLLIMIRKYCAVHDVGKAINTFHAYKRFK 227

[Close]
BLAST of Carg17341 vs. TAIR10
Match: AT5G14820.1 (Pentatricopeptide repeat (PPR) superfamily protein)

HSP 1 Score: 54.7 bits (130), Expect = 3.4e-07
Identity = 46/187 (24.60%), Postives = 89/187 (47.59%), Query Frame = 0 

Query: 19  PFSFSVKLLSSCIENSSRTNGNGAPVSDGCNL-------------VSSVKNEDKRLIVDS 78
           P   SV+LL + +     ++G+ + VSDGC+              VS V++      V+ 
Sbjct: 74  PLPHSVQLLDASLGCRGFSSGS-SNVSDGCDEEVESECDNDEETGVSCVESSTNPEEVER 133

Query: 79  VCQIL-EAGPWRPSVENALAELDVKPNPELVIGVLRRLKDV-NVAVNYFRWSERVTDQAS 138
           VC+++ E      ++E  L E+ +  + +L++ VL R +     A  +F W+      A 
Sbjct: 134 VCKVIDELFALDRNMEAVLDEMKLDLSHDLIVEVLERFRHARKPAFRFFCWAAERQGFAH 193

Query: 139 CPEAYNSLLMVMARTRKFDCLEQTLEEMSIAGFGPSNNTCIEIVLSLIKSHKLREAYTFI 191
               YNS++ ++A+TR+F+ +   LEEM   G   +  T    + +   + + ++A    
Sbjct: 194 DSRTYNSMMSILAKTRQFETMVSVLEEMGTKGL-LTMETFTIAMKAFAAAKERKKAVGIF 253

[Close]
BLAST of Carg17341 vs. TAIR10
Match: AT3G62540.1 (Pentatricopeptide repeat (PPR) superfamily protein)

HSP 1 Score: 53.9 bits (128), Expect = 5.9e-07
Identity = 45/183 (24.59%), Postives = 88/183 (48.09%), Query Frame = 0 

Query: 23  SVKLLSSCIENSSRTNGNGAPVSDGCNL-------------VSSVKNEDKRLIVDSVCQI 82
           SV+LL + +     ++G+ + VSDGC+              VS V++      V+ VC++
Sbjct: 79  SVQLLDASLGCRGFSSGS-SNVSDGCDEEVESECDNDEETGVSCVESSTNPEEVERVCKV 138

Query: 83  L-EAGPWRPSVENALAELDVKPNPELVIGVLRRLKDV-NVAVNYFRWSERVTDQASCPEA 142
           + E      ++E  L E+ +  + +L++ VL R +     A  +F W+      A     
Sbjct: 139 IDELFALDRNMEAVLDEMKLDLSHDLIVEVLERFRHARKPAFRFFCWAAERQGFAHASRT 198

Query: 143 YNSLLMVMARTRKFDCLEQTLEEMSIAGFGPSNNTCIEIVLSLIKSHKLREAYTFIQTMR 191
           YNS++ ++A+TR+F+ +   LEEM   G   +  T    + +   + + ++A    + M+
Sbjct: 199 YNSMMSILAKTRQFETMVSVLEEMGTKGL-LTMETFTIAMKAFAAAKERKKAVGIFELMK 258

[Close]
BLAST of Carg17341 vs. TAIR10
Match: AT3G62470.1 (Pentatricopeptide repeat (PPR) superfamily protein)

HSP 1 Score: 52.8 bits (125), Expect = 1.3e-06
Identity = 45/183 (24.59%), Postives = 88/183 (48.09%), Query Frame = 0 

Query: 23  SVKLLSSCIENSSRTNGNGAPVSDGCNL-------------VSSVKNEDKRLIVDSVCQI 82
           SV+LL + +     ++G+ + VSDGC+              VS V++      V+ VC++
Sbjct: 79  SVQLLDASLGCRGFSSGS-SNVSDGCDEEVESECDNDEETGVSCVESSTNPEEVERVCKV 138

Query: 83  L-EAGPWRPSVENALAELDVKPNPELVIGVLRRLKDV-NVAVNYFRWSERVTDQASCPEA 142
           + E      ++E  L E+ +  + +L++ VL R +     A  +F W+      A     
Sbjct: 139 IDELFALDRNMEAVLDEMKLDLSHDLIVEVLERFRHARKPAFRFFCWAAERQGFAHDSRT 198

Query: 143 YNSLLMVMARTRKFDCLEQTLEEMSIAGFGPSNNTCIEIVLSLIKSHKLREAYTFIQTMR 191
           YNS++ ++A+TR+F+ +   LEEM   G   +  T    + +   + + ++A    + M+
Sbjct: 199 YNSMMSILAKTRQFETMVSVLEEMGTKGL-LTMETFTIAMKAFAAAKERKKAVGIFELMK 258

[Close]
BLAST of Carg17341 vs. Swiss-Prot
Match: sp|Q9M907|PP217_ARATH (Pentatricopeptide repeat-containing protein At3g06920 OS=Arabidopsis thaliana OX=3702 GN=At3g06920 PE=2 SV=1)

HSP 1 Score: 181.4 bits (459), Expect = 4.4e-44
Identity = 85/134 (63.43%), Postives = 100/134 (74.63%), Query Frame = 0 

Query: 57  EDKRLIVDSVCQILEAGPWRPSVENALAELDVKPNPELVIGVLRRLKDVNVAVNYFRWSE 116
           E  R  V+ +C +LE GPW PS EN L+ L  KP PE VIGVLRRLKDVN A+ YFRW E
Sbjct: 30  EGNRQTVNDICNVLETGPWGPSAENTLSALSFKPQPEFVIGVLRRLKDVNRAIEYFRWYE 89

Query: 117 RVTDQASCPEAYNSLLMVMARTRKFDCLEQTLEEMSIAGFGPSNNTCIEIVLSLIKSHKL 176
           R T+   CPE+YNSLL+VMAR R FD L+Q L EMS+AGFGPS NTCIE+VL  +K++KL
Sbjct: 90  RRTELPHCPESYNSLLLVMARCRNFDALDQILGEMSVAGFGPSVNTCIEMVLGCVKANKL 149

Query: 177 REAYTFIQTMRKFK 191
           RE Y  +Q MRKFK
Sbjct: 150 REGYDVVQMMRKFK 163

[Close]
BLAST of Carg17341 vs. Swiss-Prot
Match: sp|Q9LFQ4|PP383_ARATH (Pentatricopeptide repeat-containing protein At5g15010, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=At5g15010 PE=2 SV=2)

HSP 1 Score: 59.3 bits (142), Expect = 2.5e-07
Identity = 46/177 (25.99%), Postives = 83/177 (46.89%), Query Frame = 0 

Query: 22  FSVKLLSSCIENSSRTNGNGAPVSD---GCNLVSSVKNEDKRLIVDSVCQIL-EAGPWRP 81
           FS  +  S     +R+N      SD   GC++   + +ED    V  + +++ + G  R 
Sbjct: 57  FSTSIADSEQVGFTRSNIEKDDESDIDLGCSISDELVSED----VGKISKLVKDCGSDRK 116

Query: 82  SVENALAELDVKPNPELVIGVLRRLK-DVNVAVNYFRWSERVTDQASCPEAYNSLLMVMA 141
            + N L E DVKP+ ELV+ +L R++ D   A  +F W+ +          Y+S++ ++ 
Sbjct: 117 ELRNKLEECDVKPSNELVVEILSRVRNDWETAFTFFVWAGKQQGYVRSVREYHSMISILG 176

Query: 142 RTRKFDCLEQTLEEMSIAGFGPS---NNTCIEIVLSLIKSHKLREAYTFIQTMRKFK 191
           + RKFD     ++EM    F PS   + T + ++      H + +A       ++FK
Sbjct: 177 KMRKFDTAWTLIDEM--RKFSPSLVNSQTLLIMIRKYCAVHDVGKAINTFHAYKRFK 227

[Close]
BLAST of Carg17341 vs. Swiss-Prot
Match: sp|Q9LEQ7|PP382_ARATH (Pentatricopeptide repeat-containing protein At5g14820, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=At5g14820 PE=2 SV=1)

HSP 1 Score: 54.7 bits (130), Expect = 6.2e-06
Identity = 46/187 (24.60%), Postives = 89/187 (47.59%), Query Frame = 0 

Query: 19  PFSFSVKLLSSCIENSSRTNGNGAPVSDGCNL-------------VSSVKNEDKRLIVDS 78
           P   SV+LL + +     ++G+ + VSDGC+              VS V++      V+ 
Sbjct: 74  PLPHSVQLLDASLGCRGFSSGS-SNVSDGCDEEVESECDNDEETGVSCVESSTNPEEVER 133

Query: 79  VCQIL-EAGPWRPSVENALAELDVKPNPELVIGVLRRLKDV-NVAVNYFRWSERVTDQAS 138
           VC+++ E      ++E  L E+ +  + +L++ VL R +     A  +F W+      A 
Sbjct: 134 VCKVIDELFALDRNMEAVLDEMKLDLSHDLIVEVLERFRHARKPAFRFFCWAAERQGFAH 193

Query: 139 CPEAYNSLLMVMARTRKFDCLEQTLEEMSIAGFGPSNNTCIEIVLSLIKSHKLREAYTFI 191
               YNS++ ++A+TR+F+ +   LEEM   G   +  T    + +   + + ++A    
Sbjct: 194 DSRTYNSMMSILAKTRQFETMVSVLEEMGTKGL-LTMETFTIAMKAFAAAKERKKAVGIF 253

[Close]
BLAST of Carg17341 vs. Swiss-Prot
Match: sp|Q3EAF8|PP294_ARATH (Pentatricopeptide repeat-containing protein At3g62540, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=At3g62540 PE=2 SV=1)

HSP 1 Score: 53.9 bits (128), Expect = 1.1e-05
Identity = 45/183 (24.59%), Postives = 88/183 (48.09%), Query Frame = 0 

Query: 23  SVKLLSSCIENSSRTNGNGAPVSDGCNL-------------VSSVKNEDKRLIVDSVCQI 82
           SV+LL + +     ++G+ + VSDGC+              VS V++      V+ VC++
Sbjct: 79  SVQLLDASLGCRGFSSGS-SNVSDGCDEEVESECDNDEETGVSCVESSTNPEEVERVCKV 138

Query: 83  L-EAGPWRPSVENALAELDVKPNPELVIGVLRRLKDV-NVAVNYFRWSERVTDQASCPEA 142
           + E      ++E  L E+ +  + +L++ VL R +     A  +F W+      A     
Sbjct: 139 IDELFALDRNMEAVLDEMKLDLSHDLIVEVLERFRHARKPAFRFFCWAAERQGFAHASRT 198

Query: 143 YNSLLMVMARTRKFDCLEQTLEEMSIAGFGPSNNTCIEIVLSLIKSHKLREAYTFIQTMR 191
           YNS++ ++A+TR+F+ +   LEEM   G   +  T    + +   + + ++A    + M+
Sbjct: 199 YNSMMSILAKTRQFETMVSVLEEMGTKGL-LTMETFTIAMKAFAAAKERKKAVGIFELMK 258

[Close]
BLAST of Carg17341 vs. Swiss-Prot
Match: sp|Q9LZP3|PP293_ARATH (Pentatricopeptide repeat-containing protein At3g62470, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=At3g62470 PE=2 SV=1)

HSP 1 Score: 52.8 bits (125), Expect = 2.4e-05
Identity = 45/183 (24.59%), Postives = 88/183 (48.09%), Query Frame = 0 

Query: 23  SVKLLSSCIENSSRTNGNGAPVSDGCNL-------------VSSVKNEDKRLIVDSVCQI 82
           SV+LL + +     ++G+ + VSDGC+              VS V++      V+ VC++
Sbjct: 79  SVQLLDASLGCRGFSSGS-SNVSDGCDEEVESECDNDEETGVSCVESSTNPEEVERVCKV 138

Query: 83  L-EAGPWRPSVENALAELDVKPNPELVIGVLRRLKDV-NVAVNYFRWSERVTDQASCPEA 142
           + E      ++E  L E+ +  + +L++ VL R +     A  +F W+      A     
Sbjct: 139 IDELFALDRNMEAVLDEMKLDLSHDLIVEVLERFRHARKPAFRFFCWAAERQGFAHDSRT 198

Query: 143 YNSLLMVMARTRKFDCLEQTLEEMSIAGFGPSNNTCIEIVLSLIKSHKLREAYTFIQTMR 191
           YNS++ ++A+TR+F+ +   LEEM   G   +  T    + +   + + ++A    + M+
Sbjct: 199 YNSMMSILAKTRQFETMVSVLEEMGTKGL-LTMETFTIAMKAFAAAKERKKAVGIFELMK 258

[Close]
BLAST of Carg17341 vs. TrEMBL
Match: tr|A0A0A0L914|A0A0A0L914_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G154350 PE=4 SV=1)

HSP 1 Score: 253.1 bits (645), Expect = 2.4e-63
Identity = 129/170 (75.88%), Postives = 142/170 (83.53%), Query Frame = 0 

Query: 5   GAGQIYCLALKFKNPFSFSVKLLSSCIENSSR-TNGNGAPVSDGCNLVSSVKNEDKRLIV 64
           GAGQI CL LK  NP  FSV+  SS I +SS+ TNGNG PV  G +L+ S KNE+KR ++
Sbjct: 9   GAGQINCLDLKCGNPIKFSVRFFSSWIGDSSQTTNGNGGPVPGGGDLLPSAKNENKRQVI 68

Query: 65  DSVCQILEAGPWRPSVENALAELDVKPNPELVIGVLRRLKDVNVAVNYFRWSERVTDQAS 124
           DSVCQILE GPW  SVEN LAELD+ PNPELVIGVLRRLKDVN AVNYFRW+ER+TD+A 
Sbjct: 69  DSVCQILETGPWGSSVENRLAELDLNPNPELVIGVLRRLKDVNNAVNYFRWAERLTDRAH 128

Query: 125 CPEAYNSLLMVMARTRKFDCLEQTLEEMSIAGFGPSNNTCIEIVLSLIKS 174
           C EAYNSLLMVMARTRKF+CLEQ LEEMSIAGFGPSNNTCIEIVLS IKS
Sbjct: 129 CREAYNSLLMVMARTRKFNCLEQILEEMSIAGFGPSNNTCIEIVLSFIKS 178

[Close]
BLAST of Carg17341 vs. TrEMBL
Match: tr|A0A1S4DSK3|A0A1S4DSK3_CUCME (pentatricopeptide repeat-containing protein At3g06920 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103483846 PE=4 SV=1)

HSP 1 Score: 252.3 bits (643), Expect = 4.1e-63
Identity = 130/170 (76.47%), Postives = 141/170 (82.94%), Query Frame = 0 

Query: 3   ISGAGQIYCLALKFKNPFSFSVKLLSSCIENSSR-TNGNGAPVSDGCNLVSSVKNEDKRL 62
           ISGAGQI CL LK+ NP  FSV+  SS I +SS+ TNGNG PVS G +L+ S KNE+KR 
Sbjct: 12  ISGAGQINCLDLKYGNPIKFSVRFFSSWIGDSSQTTNGNGGPVSGGGDLLPSAKNENKRQ 71

Query: 63  IVDSVCQILEAGPWRPSVENALAELDVKPNPELVIGVLRRLKDVNVAVNYFRWSERVTDQ 122
           +VD VCQILE GPW  SVEN LAEL + PNPELVIGVLRRLKDVN AVNYFRW+ERVTDQ
Sbjct: 72  VVDGVCQILETGPWGSSVENRLAELHINPNPELVIGVLRRLKDVNNAVNYFRWAERVTDQ 131

Query: 123 ASCPEAYNSLLMVMARTRKFDCLEQTLEEMSIAGFGPSNNTCIEIVLSLI 172
           A   EAYNSLLMVMARTRKF+CLEQ LEEMSIAGFGPSNNTCIEIVLS I
Sbjct: 132 AHSHEAYNSLLMVMARTRKFNCLEQILEEMSIAGFGPSNNTCIEIVLSFI 181

[Close]
BLAST of Carg17341 vs. TrEMBL
Match: tr|A0A1S4DTD7|A0A1S4DTD7_CUCME (pentatricopeptide repeat-containing protein At3g06920 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103483846 PE=4 SV=1)

HSP 1 Score: 249.2 bits (635), Expect = 3.5e-62
Identity = 128/168 (76.19%), Postives = 139/168 (82.74%), Query Frame = 0 

Query: 5   GAGQIYCLALKFKNPFSFSVKLLSSCIENSSR-TNGNGAPVSDGCNLVSSVKNEDKRLIV 64
           GAGQI CL LK+ NP  FSV+  SS I +SS+ TNGNG PVS G +L+ S KNE+KR +V
Sbjct: 9   GAGQINCLDLKYGNPIKFSVRFFSSWIGDSSQTTNGNGGPVSGGGDLLPSAKNENKRQVV 68

Query: 65  DSVCQILEAGPWRPSVENALAELDVKPNPELVIGVLRRLKDVNVAVNYFRWSERVTDQAS 124
           D VCQILE GPW  SVEN LAEL + PNPELVIGVLRRLKDVN AVNYFRW+ERVTDQA 
Sbjct: 69  DGVCQILETGPWGSSVENRLAELHINPNPELVIGVLRRLKDVNNAVNYFRWAERVTDQAH 128

Query: 125 CPEAYNSLLMVMARTRKFDCLEQTLEEMSIAGFGPSNNTCIEIVLSLI 172
             EAYNSLLMVMARTRKF+CLEQ LEEMSIAGFGPSNNTCIEIVLS I
Sbjct: 129 SHEAYNSLLMVMARTRKFNCLEQILEEMSIAGFGPSNNTCIEIVLSFI 176

[Close]
BLAST of Carg17341 vs. TrEMBL
Match: tr|A0A2P4JLQ1|A0A2P4JLQ1_QUESU (Pentatricopeptide repeat-containing protein OS=Quercus suber OX=58331 GN=CFP56_28135 PE=4 SV=1)

HSP 1 Score: 223.4 bits (568), Expect = 2.0e-54
Identity = 118/190 (62.11%), Postives = 138/190 (72.63%), Query Frame = 0 

Query: 1   MCISGAGQIYCLALKFKNPFSFSVKLLSSCIENSSRTNGNGAPVSDGCNLVSSVKNEDKR 60
           M +   G IY + LK  + ++ S K  SS     S  +G   P  D  N  SS K E  R
Sbjct: 1   MLLRNQGLIYQIDLKCSHIYT-SFKKFSSLYNGPSEVDGKVVPFLDEANRESSRKVEGVR 60

Query: 61  LIVDSVCQILEAGPWRPSVENALAELDVKPNPELVIGVLRRLKDVNVAVNYFRWSERVTD 120
             +D+VC ILE+GPW P++E+AL+ LD KP PELVIGVLRRLKDVNVAVNYFRW+ER TD
Sbjct: 61  QALDNVCHILESGPWGPALEDALSLLDEKPKPELVIGVLRRLKDVNVAVNYFRWAERKTD 120

Query: 121 QASCPEAYNSLLMVMARTRKFDCLEQTLEEMSIAGFGPSNNTCIEIVLSLIKSHKLREAY 180
           QA  PEAYNSLLMVMAR RKF+CLE+ LEEMSIAGFGPSNN CIE+V+S +KS  LREA+
Sbjct: 121 QAHSPEAYNSLLMVMARGRKFNCLEEILEEMSIAGFGPSNNVCIELVVSCVKSQNLREAF 180

Query: 181 TFIQTMRKFK 191
             IQTMRKFK
Sbjct: 181 DLIQTMRKFK 189

[Close]
BLAST of Carg17341 vs. TrEMBL
Match: tr|A0A2N9I9V6|A0A2N9I9V6_FAGSY (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS49334 PE=4 SV=1)

HSP 1 Score: 221.9 bits (564), Expect = 6.0e-54
Identity = 115/190 (60.53%), Postives = 138/190 (72.63%), Query Frame = 0 

Query: 1   MCISGAGQIYCLALKFKNPFSFSVKLLSSCIENSSRTNGNGAPVSDGCNLVSSVKNEDKR 60
           M +   G IY + LK  + ++ S K  SS     S  +G   P  DG N  SS K +  R
Sbjct: 3   MPLKNRGLIYQIDLKCCHIYT-SPKKFSSLFNGPSEVDGKVVPFLDGANRESSRKVDGVR 62

Query: 61  LIVDSVCQILEAGPWRPSVENALAELDVKPNPELVIGVLRRLKDVNVAVNYFRWSERVTD 120
            +VD+VC ILE+GPW P++ENAL+ LD KP PELVIGVLRRLK+VN AVNYFRW+ER TD
Sbjct: 63  QVVDNVCHILESGPWGPTLENALSLLDEKPQPELVIGVLRRLKNVNAAVNYFRWAERKTD 122

Query: 121 QASCPEAYNSLLMVMARTRKFDCLEQTLEEMSIAGFGPSNNTCIEIVLSLIKSHKLREAY 180
           QA  PE YNSLLMVMAR+RKFDCLE+ +EEMSIAGFGPSN  C+E+V+S +KS  LREA+
Sbjct: 123 QAHSPEEYNSLLMVMARSRKFDCLEEIMEEMSIAGFGPSNYVCVELVVSCVKSQNLREAF 182

Query: 181 TFIQTMRKFK 191
             IQTMRKFK
Sbjct: 183 DLIQTMRKFK 191

The following BLAST results are available for this feature:
BLAST of Carg17341 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022937270.11.1e-99100.00pentatricopeptide repeat-containing protein At3g06920 [Cucurbita moschata][more]
XP_023540644.15.8e-9396.13pentatricopeptide repeat-containing protein At3g06920 [Cucurbita pepo subsp. pep... [more]
XP_022973661.11.7e-9296.09pentatricopeptide repeat-containing protein At3g06920-like [Cucurbita maxima] >X... [more]
XP_022137955.15.4e-6773.37LOW QUALITY PROTEIN: pentatricopeptide repeat-containing protein At3g06920 [Momo... [more]
XP_004134213.13.6e-6375.88PREDICTED: pentatricopeptide repeat-containing protein At3g06920 [Cucumis sativu... [more]
BLAST of Carg17341 vs. TAIR10
Match NameE-valueIdentityDescription
AT3G06920.12.4e-4563.43Tetratricopeptide repeat (TPR)-like superfamily protein[more]
AT5G15010.11.4e-0825.99Tetratricopeptide repeat (TPR)-like superfamily protein[more]
AT5G14820.13.4e-0724.60Pentatricopeptide repeat (PPR) superfamily protein[more]
AT3G62540.15.9e-0724.59Pentatricopeptide repeat (PPR) superfamily protein[more]
AT3G62470.11.3e-0624.59Pentatricopeptide repeat (PPR) superfamily protein[more]
BLAST of Carg17341 vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|Q9M907|PP217_ARATH4.4e-4463.43Pentatricopeptide repeat-containing protein At3g06920 OS=Arabidopsis thaliana OX... [more]
sp|Q9LFQ4|PP383_ARATH2.5e-0725.99Pentatricopeptide repeat-containing protein At5g15010, mitochondrial OS=Arabidop... [more]
sp|Q9LEQ7|PP382_ARATH6.2e-0624.60Pentatricopeptide repeat-containing protein At5g14820, mitochondrial OS=Arabidop... [more]
sp|Q3EAF8|PP294_ARATH1.1e-0524.59Pentatricopeptide repeat-containing protein At3g62540, mitochondrial OS=Arabidop... [more]
sp|Q9LZP3|PP293_ARATH2.4e-0524.59Pentatricopeptide repeat-containing protein At3g62470, mitochondrial OS=Arabidop... [more]
BLAST of Carg17341 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0L914|A0A0A0L914_CUCSA2.4e-6375.88Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G154350 PE=4 SV=1[more]
tr|A0A1S4DSK3|A0A1S4DSK3_CUCME4.1e-6376.47pentatricopeptide repeat-containing protein At3g06920 isoform X1 OS=Cucumis melo... [more]
tr|A0A1S4DTD7|A0A1S4DTD7_CUCME3.5e-6276.19pentatricopeptide repeat-containing protein At3g06920 isoform X2 OS=Cucumis melo... [more]
tr|A0A2P4JLQ1|A0A2P4JLQ1_QUESU2.0e-5462.11Pentatricopeptide repeat-containing protein OS=Quercus suber OX=58331 GN=CFP56_2... [more]
tr|A0A2N9I9V6|A0A2N9I9V6_FAGSY6.0e-5460.53Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS49334 PE=4 SV=1[more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
Vocabulary: INTERPRO
TermDefinition
IPR011990TPR-like_helical_dom_sf
IPR002885Pentatricopeptide_repeat
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0005515 protein binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg17341-RACarg17341-RAmRNA


InterPro
Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002885Pentatricopeptide repeatTIGRFAMTIGR00756TIGR00756coord: 336..369
e-value: 9.8E-8
score: 29.7
coord: 826..859
e-value: 9.8E-6
score: 23.4
coord: 266..299
e-value: 4.8E-9
score: 33.8
coord: 755..789
e-value: 2.3E-10
score: 38.0
coord: 548..579
e-value: 7.3E-5
score: 20.7
coord: 475..508
e-value: 4.7E-9
score: 33.9
coord: 441..473
e-value: 2.9E-4
score: 18.8
coord: 301..332
e-value: 2.9E-8
score: 31.4
coord: 616..649
e-value: 1.0E-10
score: 39.1
coord: 232..265
e-value: 4.0E-7
score: 27.8
coord: 197..230
e-value: 3.8E-5
score: 21.6
coord: 720..753
e-value: 6.3E-8
score: 30.3
coord: 581..614
e-value: 2.4E-6
score: 25.3
coord: 406..439
e-value: 8.1E-8
score: 30.0
coord: 510..543
e-value: 4.0E-7
score: 27.8
coord: 650..684
e-value: 3.0E-6
score: 25.0
coord: 371..398
e-value: 1.9E-7
score: 28.8
coord: 790..823
e-value: 9.0E-7
score: 26.7
coord: 686..719
e-value: 6.3E-7
score: 27.2
IPR002885Pentatricopeptide repeatPFAMPF13041PPR_2coord: 368..416
e-value: 6.6E-16
score: 58.1
coord: 263..312
e-value: 1.6E-16
score: 60.1
coord: 542..591
e-value: 6.4E-8
score: 32.6
coord: 717..766
e-value: 1.6E-16
score: 60.1
coord: 613..661
e-value: 2.3E-17
score: 62.8
IPR002885Pentatricopeptide repeatPFAMPF13812PPR_3coord: 778..831
e-value: 1.1E-10
score: 41.4
IPR002885Pentatricopeptide repeatPFAMPF01535PPRcoord: 337..366
e-value: 4.4E-6
score: 26.5
coord: 510..540
e-value: 4.5E-4
score: 20.2
IPR002885Pentatricopeptide repeatPFAMPF12854PPR_1coord: 434..463
e-value: 8.7E-7
score: 28.4
coord: 470..500
e-value: 7.9E-12
score: 44.6
coord: 678..709
e-value: 6.0E-8
score: 32.2
coord: 225..257
e-value: 1.3E-6
score: 27.9
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 648..682
score: 11.06
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 124..158
score: 8.254
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 403..437
score: 12.189
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 299..333
score: 13.022
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 683..717
score: 12.255
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 508..542
score: 11.619
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 159..193
score: 7.191
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 543..577
score: 9.295
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 194..228
score: 8.539
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 613..647
score: 14.261
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 718..752
score: 11.093
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 473..507
score: 12.836
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 788..822
score: 11.564
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 753..787
score: 12.573
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 578..612
score: 10.841
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 264..298
score: 11.838
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 369..399
score: 10.764
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 334..368
score: 11.783
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 229..263
score: 11.575
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 823..857
score: 10.698
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 438..472
score: 9.832
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3DG3DSA:1.25.40.10coord: 362..431
e-value: 1.7E-19
score: 72.1
coord: 432..505
e-value: 1.9E-21
score: 78.4
coord: 643..712
e-value: 1.0E-18
score: 69.5
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3DG3DSA:1.25.40.10coord: 713..898
e-value: 5.3E-45
score: 156.1
coord: 507..642
e-value: 7.3E-36
score: 126.1
coord: 211..361
e-value: 2.8E-45
score: 157.0
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3DG3DSA:1.25.40.10coord: 85..210
e-value: 2.9E-13
score: 51.5
IPR011990Tetratricopeptide-like helical domain superfamilySUPERFAMILYSSF48452TPR-likecoord: 309..424
IPR011990Tetratricopeptide-like helical domain superfamilySUPERFAMILYSSF48452TPR-likecoord: 436..549
coord: 691..780
coord: 362..400
NoneNo IPR availablePANTHERPTHR24015:SF555SUBFAMILY NOT NAMEDcoord: 798..858
NoneNo IPR availablePANTHERPTHR24015FAMILY NOT NAMEDcoord: 49..798
coord: 798..858
NoneNo IPR availablePANTHERPTHR24015:SF555SUBFAMILY NOT NAMEDcoord: 49..798

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Carg17341Cla021744Watermelon (97103) v1carwmB0603
Carg17341Csa3G154350Cucumber (Chinese Long) v2carcuB0633
Carg17341MELO3C006667Melon (DHL92) v3.5.1carmeB0610
Carg17341ClCG05G006130Watermelon (Charleston Gray)carwcgB0588
Carg17341CSPI03G14460Wild cucumber (PI 183967)carcpiB0639
Carg17341Cucsa.253050Cucumber (Gy14) v1carcgyB0681
Carg17341CmaCh06G015010Cucurbita maxima (Rimu)carcmaB0849
Carg17341CmaCh00G004040Cucurbita maxima (Rimu)carcmaB0846
Carg17341CmoCh06G014980Cucurbita moschata (Rifu)carcmoB0825
Carg17341Lsi05G015430Bottle gourd (USVL1VR-Ls)carlsiB552
Carg17341Cp4.1LG08g05010Cucurbita pepo (Zucchini)carcpeB0861
Carg17341CsGy3G014600Cucumber (Gy14) v2carcgybB0605
Carg17341CsaV3_3G014680Cucumber (Chinese Long) v3carcucB0640
Carg17341Cla97C05G087650Watermelon (97103) v2carwmbB0631
Carg17341Bhi01G000722Wax gourdcarwgoB0722
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Carg17341Silver-seed gourdcarcarB083
Carg17341Silver-seed gourdcarcarB543
Carg17341Silver-seed gourdcarcarB544
Carg17341Cucurbita maxima (Rimu)carcmaB0847
Carg17341Cucurbita maxima (Rimu)carcmaB0848
Carg17341Cucurbita maxima (Rimu)carcmaB0850
Carg17341Cucurbita moschata (Rifu)carcmoB0823
Carg17341Cucurbita moschata (Rifu)carcmoB0824
Carg17341Cucurbita moschata (Rifu)carcmoB0826
Carg17341Cucurbita pepo (Zucchini)carcpeB0857
Carg17341Cucurbita pepo (Zucchini)carcpeB0859
Carg17341Cucurbita pepo (Zucchini)carcpeB0860
Carg17341Bottle gourd (USVL1VR-Ls)carlsiB550
Carg17341Melon (DHL92) v3.5.1carmeB0609
Carg17341Melon (DHL92) v3.6.1carmedB0615
Carg17341Melon (DHL92) v3.6.1carmedB0616
Carg17341Watermelon (Charleston Gray)carwcgB0589
Carg17341Watermelon (97103) v1carwmB0604
Carg17341Watermelon (97103) v2carwmbB0632
Carg17341Wax gourdcarwgoB0720