Carg17188 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg17188
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Auxin-responsive protein
Location	Cucurbita_argyrosperma_scaffold_110 : 343459 .. 343911 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACGGCTGGACTTGGAAAATGCAGCAAAATCCGACACATTGTCAGGCTCCGACAAATGCTCCGACGGTGGCGCAACAAGGCACGAATATCCGCCAATCGTATCCCCTCGGACGTACCTGCCGGACACGTGGCCGTTTGCGTTGGAACGAGCTGTCGACGGTTCGTCGTCCGGGCAACTTACTTGAACCACCCGGTTTTCAAGAAGCTTTTAGTCGAAGCAGAAGAGGAATACGGGTTTAGCAATTCAGGTCCCTTGGCAATCCCTTGCGACGAATCGGTTTTCGAAGAAGTGATCCGGTTCATCTCTAGATCCGAGCCACCCAACTCGGGGCGGTTCGTGAAATTGGACGATTATCAGAGTTACTGCCATATCGGAATCAGAAACAGAGTCGATTTCTGGCCGGAATCTCGGCCTTTGCTTCATGGGTTGGCCGAGAAATCCATCTGGTAA

mRNA sequence

ATGACGGCTGGACTTGGAAAATGCAGCAAAATCCGACACATTGTCAGGCTCCGACAAATGCTCCGACGGTGGCGCAACAAGGCACGAATATCCGCCAATCGTATCCCCTCGGACGTACCTGCCGGACACGTGGCCGTTTGCGTTGGAACGAGCTGTCGACGGTTCGTCGTCCGGGCAACTTACTTGAACCACCCGGTTTTCAAGAAGCTTTTAGTCGAAGCAGAAGAGGAATACGGGTTTAGCAATTCAGGTCCCTTGGCAATCCCTTGCGACGAATCGGTTTTCGAAGAAGTGATCCGGTTCATCTCTAGATCCGAGCCACCCAACTCGGGGCGGTTCGTGAAATTGGACGATTATCAGAGTTACTGCCATATCGGAATCAGAAACAGAGTCGATTTCTGGCCGGAATCTCGGCCTTTGCTTCATGGGTTGGCCGAGAAATCCATCTGGTAA

Coding sequence (CDS)

ATGACGGCTGGACTTGGAAAATGCAGCAAAATCCGACACATTGTCAGGCTCCGACAAATGCTCCGACGGTGGCGCAACAAGGCACGAATATCCGCCAATCGTATCCCCTCGGACGTACCTGCCGGACACGTGGCCGTTTGCGTTGGAACGAGCTGTCGACGGTTCGTCGTCCGGGCAACTTACTTGAACCACCCGGTTTTCAAGAAGCTTTTAGTCGAAGCAGAAGAGGAATACGGGTTTAGCAATTCAGGTCCCTTGGCAATCCCTTGCGACGAATCGGTTTTCGAAGAAGTGATCCGGTTCATCTCTAGATCCGAGCCACCCAACTCGGGGCGGTTCGTGAAATTGGACGATTATCAGAGTTACTGCCATATCGGAATCAGAAACAGAGTCGATTTCTGGCCGGAATCTCGGCCTTTGCTTCATGGGTTGGCCGAGAAATCCATCTGGTAA

Protein sequence

MTAGLGKCSKIRHIVRLRQMLRRWRNKARISANRIPSDVPAGHVAVCVGTSCRRFVVRATYLNHPVFKKLLVEAEEEYGFSNSGPLAIPCDESVFEEVIRFISRSEPPNSGRFVKLDDYQSYCHIGIRNRVDFWPESRPLLHGLAEKSIW

Homology

[Close]

BLAST of Carg17188 vs. NCBI nr
Match: XP_022941181.1 (auxin-induced protein 6B-like [Cucurbita moschata])

HSP 1 Score: 317.4 bits (812), Expect = 2.6e-83
Identity = 150/150 (100.00%), Postives = 150/150 (100.00%), Query Frame = 0


Query: 1   MTAGLGKCSKIRHIVRLRQMLRRWRNKARISANRIPSDVPAGHVAVCVGTSCRRFVVRAT 60
           MTAGLGKCSKIRHIVRLRQMLRRWRNKARISANRIPSDVPAGHVAVCVGTSCRRFVVRAT
Sbjct: 1   MTAGLGKCSKIRHIVRLRQMLRRWRNKARISANRIPSDVPAGHVAVCVGTSCRRFVVRAT 60

Query: 61  YLNHPVFKKLLVEAEEEYGFSNSGPLAIPCDESVFEEVIRFISRSEPPNSGRFVKLDDYQ 120
           YLNHPVFKKLLVEAEEEYGFSNSGPLAIPCDESVFEEVIRFISRSEPPNSGRFVKLDDYQ
Sbjct: 61  YLNHPVFKKLLVEAEEEYGFSNSGPLAIPCDESVFEEVIRFISRSEPPNSGRFVKLDDYQ 120

Query: 121 SYCHIGIRNRVDFWPESRPLLHGLAEKSIW 151
           SYCHIGIRNRVDFWPESRPLLHGLAEKSIW
Sbjct: 121 SYCHIGIRNRVDFWPESRPLLHGLAEKSIW 150

[Close]

BLAST of Carg17188 vs. NCBI nr
Match: XP_022982465.1 (auxin-induced protein 6B-like [Cucurbita maxima])

HSP 1 Score: 310.5 bits (794), Expect = 3.2e-81
Identity = 146/150 (97.33%), Postives = 149/150 (99.33%), Query Frame = 0


Query: 1   MTAGLGKCSKIRHIVRLRQMLRRWRNKARISANRIPSDVPAGHVAVCVGTSCRRFVVRAT 60
           MTAGLGKCSKIRHIVRLRQMLRRWRNKAR+SANRIPSDVPAGHVAVCVGTSCRRFVVRAT
Sbjct: 1   MTAGLGKCSKIRHIVRLRQMLRRWRNKARMSANRIPSDVPAGHVAVCVGTSCRRFVVRAT 60

Query: 61  YLNHPVFKKLLVEAEEEYGFSNSGPLAIPCDESVFEEVIRFISRSEPPNSGRFVKLDDYQ 120
           YLNHPVFKKLLVEAEEE+GFSNSGPLAIPCDESVFEEVIRFISRSEPPNSGRFVKLDDYQ
Sbjct: 61  YLNHPVFKKLLVEAEEEFGFSNSGPLAIPCDESVFEEVIRFISRSEPPNSGRFVKLDDYQ 120

Query: 121 SYCHIGIRNRVDFWPESRPLLHGLAEKSIW 151
           SYCHIGIR+RVD WPESRPLLHGLAEKSIW
Sbjct: 121 SYCHIGIRSRVDMWPESRPLLHGLAEKSIW 150

[Close]

BLAST of Carg17188 vs. NCBI nr
Match: XP_023525874.1 (auxin-induced protein 6B-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 309.7 bits (792), Expect = 5.5e-81
Identity = 148/150 (98.67%), Postives = 148/150 (98.67%), Query Frame = 0


Query: 1   MTAGLGKCSKIRHIVRLRQMLRRWRNKARISANRIPSDVPAGHVAVCVGTSCRRFVVRAT 60
           MTAGLGKCSKIRHIVRLRQMLRRWRNKARISANRIPSDVPAGHVAVCVGTSCRRFVVRAT
Sbjct: 1   MTAGLGKCSKIRHIVRLRQMLRRWRNKARISANRIPSDVPAGHVAVCVGTSCRRFVVRAT 60

Query: 61  YLNHPVFKKLLVEAEEEYGFSNSGPLAIPCDESVFEEVIRFISRSEPPNSGRFVKLDDYQ 120
           YLNHPVFKKLLVEAEEEYGFSNSGPLAIPCDESVFEEVIRFISRSEPPNSGRFVKLDD Q
Sbjct: 61  YLNHPVFKKLLVEAEEEYGFSNSGPLAIPCDESVFEEVIRFISRSEPPNSGRFVKLDDCQ 120

Query: 121 SYCHIGIRNRVDFWPESRPLLHGLAEKSIW 151
           SY HIGIRNRVDFWPESRPLLHGLAEKSIW
Sbjct: 121 SYYHIGIRNRVDFWPESRPLLHGLAEKSIW 150

[Close]

BLAST of Carg17188 vs. NCBI nr
Match: XP_011652445.1 (PREDICTED: auxin-induced protein 6B-like [Cucumis sativus])

HSP 1 Score: 293.9 bits (751), Expect = 3.1e-76
Identity = 138/150 (92.00%), Postives = 144/150 (96.00%), Query Frame = 0


Query: 1   MTAGLGKCSKIRHIVRLRQMLRRWRNKARISANRIPSDVPAGHVAVCVGTSCRRFVVRAT 60
           M+AGLGKCSKIRHIVRLRQMLRRWRNKAR+SANRIPSDVPAGHVAVCVGTS RRFVVRAT
Sbjct: 1   MSAGLGKCSKIRHIVRLRQMLRRWRNKARMSANRIPSDVPAGHVAVCVGTSSRRFVVRAT 60

Query: 61  YLNHPVFKKLLVEAEEEYGFSNSGPLAIPCDESVFEEVIRFISRSEPPNSGRFVKLDDYQ 120
           YLNHPVFKKLLV+AEEEYGF+N GPLAIPCDESVFEEVIRFISRSE PNSGRFVKLDD+Q
Sbjct: 61  YLNHPVFKKLLVQAEEEYGFTNQGPLAIPCDESVFEEVIRFISRSESPNSGRFVKLDDFQ 120

Query: 121 SYCHIGIRNRVDFWPESRPLLHGLAEKSIW 151
           SYCHIGIR  +D WPESRPLLHGLAEKSIW
Sbjct: 121 SYCHIGIRTGLDLWPESRPLLHGLAEKSIW 150

[Close]

BLAST of Carg17188 vs. NCBI nr
Match: XP_022936801.1 (auxin-induced protein 6B [Cucurbita moschata])

HSP 1 Score: 293.9 bits (751), Expect = 3.1e-76
Identity = 136/150 (90.67%), Postives = 145/150 (96.67%), Query Frame = 0


Query: 1   MTAGLGKCSKIRHIVRLRQMLRRWRNKARISANRIPSDVPAGHVAVCVGTSCRRFVVRAT 60
           M+AGLGKCSKIRHIVRLRQMLRRWRNKAR+SANRIPSDVPAGHVAVCVGTSCRRFVVRAT
Sbjct: 1   MSAGLGKCSKIRHIVRLRQMLRRWRNKARMSANRIPSDVPAGHVAVCVGTSCRRFVVRAT 60

Query: 61  YLNHPVFKKLLVEAEEEYGFSNSGPLAIPCDESVFEEVIRFISRSEPPNSGRFVKLDDYQ 120
           YLNHPVFKKLLV+AEEEYGF+N GPLAIPCDESVFEEVIRFISRS+ PNSGRFVKLD++Q
Sbjct: 61  YLNHPVFKKLLVQAEEEYGFTNQGPLAIPCDESVFEEVIRFISRSDSPNSGRFVKLDEFQ 120

Query: 121 SYCHIGIRNRVDFWPESRPLLHGLAEKSIW 151
           +YCHIGIR  +D WPESRPLLHGLAEKSIW
Sbjct: 121 TYCHIGIRTGLDLWPESRPLLHGLAEKSIW 150

[Close]

BLAST of Carg17188 vs. TAIR10
Match: AT1G75590.1 (SAUR-like auxin-responsive protein family )

HSP 1 Score: 226.9 bits (577), Expect = 8.5e-60
Identity = 107/154 (69.48%), Postives = 128/154 (83.12%), Query Frame = 0


Query: 1   MTAGLGKCSKIRHIVRLRQMLRRWRNKARISAN---RIPSDVPAGHVAVCVGTSCRRFVV 60
           M  GLGKCSKIRHIVRLRQMLRRWR++AR+S++    +PSDVP+GHVAV VG+SCRRFVV
Sbjct: 1   MAGGLGKCSKIRHIVRLRQMLRRWRDQARMSSSFSRCVPSDVPSGHVAVYVGSSCRRFVV 60

Query: 61  RATYLNHPVFKKLLVEAEEEYGFSNSGPLAIPCDESVFEEVIRFISRSEPPNSGRFVKLD 120
           RATYLNHPV + LLV+AEEE+GF N GPL IPC+ESVFEE IRFISRS+   S RF   D
Sbjct: 61  RATYLNHPVLRNLLVQAEEEFGFVNQGPLVIPCEESVFEESIRFISRSDSTRSRRFTCPD 120

Query: 121 DYQSYCH-IGIRNRVDFWPESRPLLHGLAEKSIW 151
           D+Q  CH +GIR+++D W ESRPLLHG+ EK++W
Sbjct: 121 DFQKNCHVVGIRSKLDLWIESRPLLHGVTEKAVW 154

[Close]

BLAST of Carg17188 vs. TAIR10
Match: AT1G19840.1 (SAUR-like auxin-responsive protein family )

HSP 1 Score: 212.6 bits (540), Expect = 1.7e-55
Identity = 104/154 (67.53%), Postives = 123/154 (79.87%), Query Frame = 0


Query: 1   MTAGLGKCSKIRHIVRLRQMLRRWRNKARIS--ANRIPSDVPAGHVAVCVGTSCRRFVVR 60
           M   L KCSKIRHIVRLRQMLRRWRNKAR+S  +  +PSDVP+GHVAVCVG+ CRRFVVR
Sbjct: 1   MAGSLVKCSKIRHIVRLRQMLRRWRNKARLSSVSRCVPSDVPSGHVAVCVGSGCRRFVVR 60

Query: 61  ATYLNHPVFKKLLVEAEEEYGFSNSGPLAIPCDESVFEEVIRFISRSEPPNSGRFVKLDD 120
           A+YLNHP+   LLV+AEEE+GF+N GPL IPC+ESVFEE IRFISRS+   S RF   DD
Sbjct: 61  ASYLNHPIISNLLVQAEEEFGFANQGPLVIPCEESVFEEAIRFISRSDSSRSSRFTCPDD 120

Query: 121 YQSYCH--IGIRNRVDFWPESRPLLHGLAEKSIW 151
            Q  C+  I I++++D   ESRPLLHG+AEK+IW
Sbjct: 121 LQK-CNGGIKIKSKLDLMIESRPLLHGVAEKAIW 153

[Close]

BLAST of Carg17188 vs. TAIR10
Match: AT5G10990.1 (SAUR-like auxin-responsive protein family )

HSP 1 Score: 203.0 bits (515), Expect = 1.3e-52
Identity = 100/151 (66.23%), Postives = 120/151 (79.47%), Query Frame = 0


Query: 1   MTAGLGKCSKIRHIVRLRQMLRRWRNKARISANR--IPSDVPAGHVAVCVGTSCRRFVVR 60
           M  G+GKCSKIRHIV+LRQMLR+WRNKAR+S+ R  +PSDVP+GHVAV VG SCRRFVV 
Sbjct: 1   MAGGIGKCSKIRHIVKLRQMLRQWRNKARMSSVRRSVPSDVPSGHVAVYVGRSCRRFVVL 60

Query: 61  ATYLNHPVFKKLLVEAEEEYGFSNSGPLAIPCDESVFEEVIRFISRSEPPNSGRFVKLDD 120
           ATYLNHP+   LLV+AEEE+GF+N GPL IPC+ESVFEE IRFI+R     S RF   DD
Sbjct: 61  ATYLNHPILMNLLVKAEEEFGFANQGPLVIPCEESVFEESIRFITR-----SSRFTCTDD 120

Query: 121 YQSYCHIGIRNRVDFWPESRPLLHGLAEKSI 150
            +   H GIR+++D   ESRPLLHG++EK+I
Sbjct: 121 LKKNRHGGIRSKLDLLMESRPLLHGVSEKAI 146

[Close]

BLAST of Carg17188 vs. TAIR10
Match: AT4G34750.1 (SAUR-like auxin-responsive protein family )

HSP 1 Score: 157.9 bits (398), Expect = 4.8e-39
Identity = 85/153 (55.56%), Postives = 113/153 (73.86%), Query Frame = 0


Query: 5   LGKCSKIRHIVRLRQMLRRWRNKARI-SANRIP-SDVPAGHVAVCVGTSCRRFVVRATYL 64
           +GK +KI  +VR+RQML++W+ KA I S+N  P SDVP GHVAV VG + RR+VVRA +L
Sbjct: 1   MGKNNKIGSVVRIRQMLKQWQKKAHIGSSNNDPVSDVPPGHVAVSVGENRRRYVVRAKHL 60

Query: 65  NHPVFKKLLVEAEEEYGFSNSGPLAIPCDESVFEEVIRFISRSE-PPNSGR----FVKLD 124
           NHP+F++LL EAEEEYGF+N GPLAIPCDES+FE++I  ++R E   +SGR       L+
Sbjct: 61  NHPIFRRLLAEAEEEYGFANVGPLAIPCDESLFEDIIAIVTRCESSSSSGRGNPPAATLE 120

Query: 125 DYQSYCHIGI-RNRVDFWPESRPLLHGLAEKSI 150
           D +   H+G+ +N V    ESRPLL G+AEKS+
Sbjct: 121 DLRRCSHVGLAKNNV----ESRPLLPGIAEKSV 149

[Close]

BLAST of Carg17188 vs. TAIR10
Match: AT2G24400.1 (SAUR-like auxin-responsive protein family )

HSP 1 Score: 76.6 bits (187), Expect = 1.4e-14
Identity = 47/136 (34.56%), Postives = 69/136 (50.74%), Query Frame = 0


Query: 7   KCSKIRHIVRLRQMLRRWRN----------------------------KARISANRIPSD 66
           K +KIR IV+L+Q+L++WR                             K  +S   + + 
Sbjct: 5   KSNKIREIVKLQQLLKKWRXXXXXXXXXXXXXXXXXXXXXXXXSIKFLKRTLSFTDVTA- 64

Query: 67  VPAGHVAVCVGTSCRRFVVRATYLNHPVFKKLLVEAEEEYGFSNSGPLAIPCDESVFEEV 115
           VP G++AV VG   +R+ +   YL+H  F  LL EAEEE+GF  +G L IPC+ SVFE +
Sbjct: 65  VPKGYLAVSVGLEKKRYTIPTEYLSHQAFYVLLREAEEEFGFQQAGVLRIPCEVSVFESI 124

[Close]

BLAST of Carg17188 vs. Swiss-Prot
Match: sp|O65695|SAU50_ARATH (Auxin-responsive protein SAUR50 OS=Arabidopsis thaliana OX=3702 GN=SAUR50 PE=1 SV=1)

HSP 1 Score: 75.5 bits (184), Expect = 5.7e-13
Identity = 40/101 (39.60%), Postives = 57/101 (56.44%), Query Frame = 0


Query: 7   KCSKIRHIVRLRQMLRRW-----RNKARISANRIPSDVPAGHVAVCVGTSCRRFVVRATY 66
           K SK+     L+Q+L+R      +N      + +P DVP GH  V VG +  R++V  ++
Sbjct: 6   KTSKLTQTAMLKQILKRCSSLGKKNGGGYDEDCLPLDVPKGHFPVYVGENRSRYIVPISF 65

Query: 67  LNHPVFKKLLVEAEEEYGFSNSGPLAIPCDESVFEEVIRFI 103
           L HP F+ LL  AEEE+GF +   L IPCDE VF+ +   I
Sbjct: 66  LTHPEFQSLLQRAEEEFGFDHDMGLTIPCDELVFQTLTSMI 106

[Close]

BLAST of Carg17188 vs. Swiss-Prot
Match: sp|P33083|AX6B_SOYBN (Auxin-induced protein 6B OS=Glycine max OX=3847 PE=2 SV=1)

HSP 1 Score: 73.6 bits (179), Expect = 2.2e-12
Identity = 38/81 (46.91%), Postives = 53/81 (65.43%), Query Frame = 0


Query: 27  KARISANRIPS---DVPAGHVAVCVGTSCRRFVVRATYLNHPVFKKLLVEAEEEYGFSN- 86
           KA  SAN+  S   DV  G++AV VG   RRFV+  +YLN P F+ LL +AEEE+G+ + 
Sbjct: 10  KASFSANQASSKAVDVEKGYLAVYVGEKMRRFVIPVSYLNKPSFQDLLSQAEEEFGYHHP 69

Query: 87  SGPLAIPCDESVFEEVIRFIS 104
           +G L IPC E VF+ +  F++
Sbjct: 70  NGGLTIPCSEDVFQHITSFLN 90

[Close]

BLAST of Carg17188 vs. Swiss-Prot
Match: sp|O64538|SAU40_ARATH (Auxin-responsive protein SAUR40 OS=Arabidopsis thaliana OX=3702 GN=SAUR40 PE=2 SV=1)

HSP 1 Score: 71.6 bits (174), Expect = 8.2e-12
Identity = 34/65 (52.31%), Postives = 43/65 (66.15%), Query Frame = 0


Query: 35  IPSDVPAGHVAVCVGTSCRRFVVRATYLNHPVFKKLLVEAEEEYGFSNSGPLAIPCDESV 94
           + S VP+GHV V VG    RFVV A  LNHPVF  LL  + +EYG++  G L IPC+  V
Sbjct: 44  VASSVPSGHVPVNVGEDKERFVVSAELLNHPVFVGLLNRSAQEYGYTQKGVLHIPCNVFV 103

Query: 95  FEEVI 100
           FE+V+
Sbjct: 104 FEQVV 108

[Close]

BLAST of Carg17188 vs. Swiss-Prot
Match: sp|Q9SGU2|SAU71_ARATH (Auxin-responsive protein SAUR71 OS=Arabidopsis thaliana OX=3702 GN=SAUR71 PE=2 SV=1)

HSP 1 Score: 71.2 bits (173), Expect = 1.1e-11
Identity = 36/80 (45.00%), Postives = 45/80 (56.25%), Query Frame = 0


Query: 20  MLRRWRNKARISANRIPSDVPAGHVAVCVGTSCRRFVVRATYLNHPVFKKLLVEAEEEYG 79
           +LR    + R    +  S VP GHV V VG    RFVV A  LNHPVF  LL ++ +EYG
Sbjct: 19  LLRSESQRGRTKKEKHKSWVPEGHVPVYVGHEMERFVVNAELLNHPVFVALLKQSAQEYG 78

Query: 80  FSNSGPLAIPCDESVFEEVI 100
           +   G L IPC   VFE ++
Sbjct: 79  YEQQGVLRIPCHVLVFERIL 98

[Close]

BLAST of Carg17188 vs. Swiss-Prot
Match: sp|Q9LTV3|SAU72_ARATH (Auxin-responsive protein SAUR72 OS=Arabidopsis thaliana OX=3702 GN=SAUR72 PE=2 SV=1)

HSP 1 Score: 68.9 bits (167), Expect = 5.3e-11
Identity = 34/71 (47.89%), Postives = 40/71 (56.34%), Query Frame = 0


Query: 37  SDVPAGHVAVCVGTSCRRFVVRATYLNHPVFKKLLVEAEEEYGFSNSGPLAIPCDESVFE 96
           S VP GHV V VG    RFVV A  LNHPVF  LL  + +EYG+   G L IPC   VFE
Sbjct: 48  SSVPEGHVPVYVGDEMERFVVSAELLNHPVFIGLLNRSAQEYGYEQKGVLQIPCHVLVFE 107

Query: 97  EVIRFISRSEP 108
            ++  +    P
Sbjct: 108 RIMESLRLGLP 118

[Close]

BLAST of Carg17188 vs. TrEMBL
Match: tr|A0A1S3CRK3|A0A1S3CRK3_CUCME (auxin-induced protein 6B OS=Cucumis melo OX=3656 GN=LOC103503890 PE=4 SV=1)

HSP 1 Score: 293.5 bits (750), Expect = 2.7e-76
Identity = 137/150 (91.33%), Postives = 144/150 (96.00%), Query Frame = 0


Query: 1   MTAGLGKCSKIRHIVRLRQMLRRWRNKARISANRIPSDVPAGHVAVCVGTSCRRFVVRAT 60
           M+AGLGKCSKIRHIVRLRQMLRRWRNKAR+SANRIPSDVPAGHVAVCVGTS RRFVVRAT
Sbjct: 1   MSAGLGKCSKIRHIVRLRQMLRRWRNKARMSANRIPSDVPAGHVAVCVGTSSRRFVVRAT 60

Query: 61  YLNHPVFKKLLVEAEEEYGFSNSGPLAIPCDESVFEEVIRFISRSEPPNSGRFVKLDDYQ 120
           YLNHPVFKKLL++AEEEYGF+N GPLAIPCDESVFEEVIRFISRSE PNSGRFVKLDD+Q
Sbjct: 61  YLNHPVFKKLLIQAEEEYGFTNQGPLAIPCDESVFEEVIRFISRSESPNSGRFVKLDDFQ 120

Query: 121 SYCHIGIRNRVDFWPESRPLLHGLAEKSIW 151
           SYCHIGIR  +D WPESRPLLHGLAEKSIW
Sbjct: 121 SYCHIGIRTGLDLWPESRPLLHGLAEKSIW 150

[Close]

BLAST of Carg17188 vs. TrEMBL
Match: tr|A0A0A0LDJ7|A0A0A0LDJ7_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G866530 PE=4 SV=1)

HSP 1 Score: 289.7 bits (740), Expect = 3.9e-75
Identity = 137/149 (91.95%), Postives = 143/149 (95.97%), Query Frame = 0


Query: 1   MTAGLGKCSKIRHIVRLRQMLRRWRNKARISANRIPSDVPAGHVAVCVGTSCRRFVVRAT 60
           M+AGLGKCSKIRHIVRLRQMLRRWRNKAR+SANRIPSDVPAGHVAVCVGTS RRFVVRAT
Sbjct: 1   MSAGLGKCSKIRHIVRLRQMLRRWRNKARMSANRIPSDVPAGHVAVCVGTSSRRFVVRAT 60

Query: 61  YLNHPVFKKLLVEAEEEYGFSNSGPLAIPCDESVFEEVIRFISRSEPPNSGRFVKLDDYQ 120
           YLNHPVFKKLLV+AEEEYGF+N GPLAIPCDESVFEEVIRFISRSE PNSGRFVKLDD+Q
Sbjct: 61  YLNHPVFKKLLVQAEEEYGFTNQGPLAIPCDESVFEEVIRFISRSESPNSGRFVKLDDFQ 120

Query: 121 SYCHIGIRNRVDFWPESRPLLHGLAEKSI 150
           SYCHIGIR  +D WPESRPLLHGLAEKSI
Sbjct: 121 SYCHIGIRTGLDLWPESRPLLHGLAEKSI 149

[Close]

BLAST of Carg17188 vs. TrEMBL
Match: tr|A0A2P4H1D0|A0A2P4H1D0_QUESU (Auxin-responsive protein saur50 OS=Quercus suber OX=58331 GN=CFP56_51478 PE=4 SV=1)

HSP 1 Score: 276.2 bits (705), Expect = 4.4e-71
Identity = 126/154 (81.82%), Postives = 143/154 (92.86%), Query Frame = 0


Query: 1   MTAGLGKCSKIRHIVRLRQMLRRWRNKARISANRIPSDVPAGHVAVCVGTSCRRFVVRAT 60
           M+AGLGKCSKIRHIVRLRQMLRRWRNKAR+SANRIPSDVPAGHVAVCVG+SCRRFVVRAT
Sbjct: 1   MSAGLGKCSKIRHIVRLRQMLRRWRNKARLSANRIPSDVPAGHVAVCVGSSCRRFVVRAT 60

Query: 61  YLNHPVFKKLLVEAEEEYGFSNSGPLAIPCDESVFEEVIRFISRSEPPNSG----RFVKL 120
           +LNHP+FKKLLV+AEEEYGF+N GPLAIPCDES+FEEV+RFISRSE   +G    RFV L
Sbjct: 61  HLNHPIFKKLLVQAEEEYGFNNQGPLAIPCDESLFEEVLRFISRSESGKNGNNPTRFVNL 120

Query: 121 DDYQSYCHIGIRNRVDFWPESRPLLHGLAEKSIW 151
           +D+Q YCH+GIRN +DFWPESRPLLHG+A+K+IW
Sbjct: 121 EDFQRYCHVGIRNNLDFWPESRPLLHGIADKTIW 154

[Close]

BLAST of Carg17188 vs. TrEMBL
Match: tr|A0A2I4DIP5|A0A2I4DIP5_9ROSI (auxin-induced protein 6B-like OS=Juglans regia OX=51240 GN=LOC108980534 PE=4 SV=1)

HSP 1 Score: 275.8 bits (704), Expect = 5.8e-71
Identity = 126/150 (84.00%), Postives = 140/150 (93.33%), Query Frame = 0


Query: 1   MTAGLGKCSKIRHIVRLRQMLRRWRNKARISANRIPSDVPAGHVAVCVGTSCRRFVVRAT 60
           M+AGLGKCSKIRHIVRLRQMLRRWR+KAR+SANRIPSDVPAGHVAVCVGTSCRRFVVRAT
Sbjct: 1   MSAGLGKCSKIRHIVRLRQMLRRWRSKARMSANRIPSDVPAGHVAVCVGTSCRRFVVRAT 60

Query: 61  YLNHPVFKKLLVEAEEEYGFSNSGPLAIPCDESVFEEVIRFISRSEPPNSGRFVKLDDYQ 120
           YLNHPVFKKLLV AEEEYGF+N GPLAIPC+ES+FEEV+R+ISR E  NS RF+ L+D Q
Sbjct: 61  YLNHPVFKKLLVRAEEEYGFNNQGPLAIPCEESLFEEVLRYISRPESGNSARFLNLEDLQ 120

Query: 121 SYCHIGIRNRVDFWPESRPLLHGLAEKSIW 151
           SYCH+GIR+++DFW ESRPLLHGL EKSIW
Sbjct: 121 SYCHVGIRSKLDFWAESRPLLHGLTEKSIW 150

[Close]

BLAST of Carg17188 vs. TrEMBL
Match: tr|A0A2I4EGB2|A0A2I4EGB2_9ROSI (auxin-induced protein 6B-like OS=Juglans regia OX=51240 GN=LOC108989331 PE=4 SV=1)

HSP 1 Score: 275.4 bits (703), Expect = 7.6e-71
Identity = 126/150 (84.00%), Postives = 140/150 (93.33%), Query Frame = 0


Query: 1   MTAGLGKCSKIRHIVRLRQMLRRWRNKARISANRIPSDVPAGHVAVCVGTSCRRFVVRAT 60
           M+AGLGKCSKIRHIVRLRQMLRRWR+KAR+SANRIPSDVPAGHVAVCVGTSCRRFVVRAT
Sbjct: 1   MSAGLGKCSKIRHIVRLRQMLRRWRSKARMSANRIPSDVPAGHVAVCVGTSCRRFVVRAT 60

Query: 61  YLNHPVFKKLLVEAEEEYGFSNSGPLAIPCDESVFEEVIRFISRSEPPNSGRFVKLDDYQ 120
           YLNHPVFKKLLV AEEEYGF+N GPLAIPC+ES+FEEV+R+ISR E  NS RF+ L+D Q
Sbjct: 61  YLNHPVFKKLLVRAEEEYGFNNQGPLAIPCEESLFEEVLRYISRLESGNSARFLNLEDLQ 120

Query: 121 SYCHIGIRNRVDFWPESRPLLHGLAEKSIW 151
           SYCH+GIR+++DFW ESRPLLHGL EKSIW
Sbjct: 121 SYCHVGIRSKLDFWAESRPLLHGLTEKSIW 150

The following BLAST results are available for this feature:

BLAST of Carg17188 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022941181.1	2.6e-83	100.00	auxin-induced protein 6B-like [Cucurbita moschata]	[more]
XP_022982465.1	3.2e-81	97.33	auxin-induced protein 6B-like [Cucurbita maxima]	[more]
XP_023525874.1	5.5e-81	98.67	auxin-induced protein 6B-like [Cucurbita pepo subsp. pepo]	[more]
XP_011652445.1	3.1e-76	92.00	PREDICTED: auxin-induced protein 6B-like [Cucumis sativus]	[more]
XP_022936801.1	3.1e-76	90.67	auxin-induced protein 6B [Cucurbita moschata]	[more]

BLAST of Carg17188 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G75590.1	8.5e-60	69.48	SAUR-like auxin-responsive protein family	[more]
AT1G19840.1	1.7e-55	67.53	SAUR-like auxin-responsive protein family	[more]
AT5G10990.1	1.3e-52	66.23	SAUR-like auxin-responsive protein family	[more]
AT4G34750.1	4.8e-39	55.56	SAUR-like auxin-responsive protein family	[more]
AT2G24400.1	1.4e-14	34.56	SAUR-like auxin-responsive protein family	[more]

BLAST of Carg17188 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|O65695\|SAU50_ARATH	5.7e-13	39.60	Auxin-responsive protein SAUR50 OS=Arabidopsis thaliana OX=3702 GN=SAUR50 PE=1 S...	[more]
sp\|P33083\|AX6B_SOYBN	2.2e-12	46.91	Auxin-induced protein 6B OS=Glycine max OX=3847 PE=2 SV=1	[more]
sp\|O64538\|SAU40_ARATH	8.2e-12	52.31	Auxin-responsive protein SAUR40 OS=Arabidopsis thaliana OX=3702 GN=SAUR40 PE=2 S...	[more]
sp\|Q9SGU2\|SAU71_ARATH	1.1e-11	45.00	Auxin-responsive protein SAUR71 OS=Arabidopsis thaliana OX=3702 GN=SAUR71 PE=2 S...	[more]
sp\|Q9LTV3\|SAU72_ARATH	5.3e-11	47.89	Auxin-responsive protein SAUR72 OS=Arabidopsis thaliana OX=3702 GN=SAUR72 PE=2 S...	[more]

BLAST of Carg17188 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3CRK3\|A0A1S3CRK3_CUCME	2.7e-76	91.33	auxin-induced protein 6B OS=Cucumis melo OX=3656 GN=LOC103503890 PE=4 SV=1	[more]
tr\|A0A0A0LDJ7\|A0A0A0LDJ7_CUCSA	3.9e-75	91.95	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G866530 PE=4 SV=1	[more]
tr\|A0A2P4H1D0\|A0A2P4H1D0_QUESU	4.4e-71	81.82	Auxin-responsive protein saur50 OS=Quercus suber OX=58331 GN=CFP56_51478 PE=4 SV...	[more]
tr\|A0A2I4DIP5\|A0A2I4DIP5_9ROSI	5.8e-71	84.00	auxin-induced protein 6B-like OS=Juglans regia OX=51240 GN=LOC108980534 PE=4 SV=...	[more]
tr\|A0A2I4EGB2\|A0A2I4EGB2_9ROSI	7.6e-71	84.00	auxin-induced protein 6B-like OS=Juglans regia OX=51240 GN=LOC108989331 PE=4 SV=...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Biological Process**
Term	Definition
GO:0009733	response to auxin

Vocabulary: **INTERPRO**
Term	Definition
IPR003676	SAUR_fam

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009733	response to auxin
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg17188-RA	Carg17188-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003676	Small auxin-up RNA	PFAM	PF02519	Auxin_inducible	coord: 16..101 e-value: 4.8E-30 score: 103.5
None	No IPR available	PANTHER	PTHR31374:SF3	SUBFAMILY NOT NAMED	coord: 6..146
None	No IPR available	PANTHER	PTHR31374	FAMILY NOT NAMED	coord: 6..146

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg17188	Cla020819	Watermelon (97103) v1	carwmB0945
Carg17188	Csa3G866530	Cucumber (Chinese Long) v2	carcuB0961
Carg17188	MELO3C003765	Melon (DHL92) v3.5.1	carmeB0928
Carg17188	ClCG05G018470	Watermelon (Charleston Gray)	carwcgB0920
Carg17188	CSPI03G43260	Wild cucumber (PI 183967)	carcpiB0984
Carg17188	Cucsa.342890	Cucumber (Gy14) v1	carcgyB1066
Carg17188	CmaCh01G019620	Cucurbita maxima (Rimu)	carcmaB1293
Carg17188	CmaCh09G001140	Cucurbita maxima (Rimu)	carcmaB1291
Carg17188	CmoCh01G020200	Cucurbita moschata (Rifu)	carcmoB1263
Carg17188	CmoCh09G001120	Cucurbita moschata (Rifu)	carcmoB1261
Carg17188	Lsi04G017280	Bottle gourd (USVL1VR-Ls)	carlsiB863
Carg17188	Cp4.1LG02g07940	Cucurbita pepo (Zucchini)	carcpeB1309
Carg17188	Cp4.1LG06g00730	Cucurbita pepo (Zucchini)	carcpeB1310
Carg17188	CsGy3G040830	Cucumber (Gy14) v2	carcgybB0934
Carg17188	MELO3C003765.2	Melon (DHL92) v3.6.1	carmedB0934
Carg17188	CsaV3_3G045710	Cucumber (Chinese Long) v3	carcucB0989
Carg17188	Cla97C11G210540	Watermelon (97103) v2	carwmbB0993
Carg17188	Cla97C05G099810	Watermelon (97103) v2	carwmbB0994
Carg17188	Bhi09G001804	Wax gourd	carwgoB1097

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Carg17188	Carg08687	Silver-seed gourd	carcarB125
Carg17188	Carg09414	Silver-seed gourd	carcarB167

The following block(s) are covering this gene:


Gene	Organism	Block
Carg17188	Cucurbita maxima (Rimu)	carcmaB1292
Carg17188	Cucurbita maxima (Rimu)	carcmaB1294
Carg17188	Cucurbita moschata (Rifu)	carcmoB1262
Carg17188	Cucurbita moschata (Rifu)	carcmoB1265
Carg17188	Cucurbita pepo (Zucchini)	carcpeB1307
Carg17188	Cucurbita pepo (Zucchini)	carcpeB1311
Carg17188	Wild cucumber (PI 183967)	carcpiB0983
Carg17188	Cucumber (Chinese Long) v2	carcuB0960
Carg17188	Cucumber (Chinese Long) v3	carcucB0988
Carg17188	Bottle gourd (USVL1VR-Ls)	carlsiB864
Carg17188	Melon (DHL92) v3.5.1	carmeB0927
Carg17188	Melon (DHL92) v3.6.1	carmedB0933
Carg17188	Watermelon (Charleston Gray)	carwcgB0922
Carg17188	Watermelon (97103) v1	carwmB0944
Carg17188	Watermelon (97103) v2	carwmbB0992
Carg17188	Watermelon (97103) v2	carwmbB0996
Carg17188	Silver-seed gourd	carcarB647
Carg17188	Cucumber (Gy14) v2	carcgybB0933
Carg17188	Cucumber (Gy14) v1	carcgyB1064