Carg17072 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg17072
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	RNA exonuclease 4
Location	Cucurbita_argyrosperma_scaffold_062 : 350466 .. 354641 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CCTTCCTCTCTTATCCCGTTGAGGGCCGCCGGGCGAGAAGACGGCCGAAGTCGACAGGTATTAGTAGTATGTGAATTGCGGGAGTTGGCCTTCGAAGTGGAGCTTCAAGATTATGGAGTCTCAGCTCAAGAAGAGAGCTAAACCCAAATTGCTGAACCCTAATTGGGCGCTACTCCAACAAGTCATTCTTCTTTCCTCCATCCCTCCTTTTTCCGTCTCTCTTTCCATCACTGATTTTTATCTTCTGATCCTGCAGAAACTGAACCCTCATGGTTCAAGGCGATCCTCCAGTGTACCGAAATCCGAAGCCTCATCAAAGACCCTTTTAGGTAACAGTTCTTCTACCCTGGGTTCATATTGCTTTCTTAGTTTCCCATTGATATTTATCTTGTTCGATGAACTCTGTGTATTATGAAATTTATCTGGTTTTGTTAACTGAGCCATGCTCTTGTTTGATGAATTCTGTGTTACTTAATATCTTTATTTCTGTGTGATTGGGGAAGTATGAGCTTCACTGATTCAAACACAGTAAGTGAAAACTGGGTTTTGCTTCAATCATCACTTTAGATGGTGTATGTTTGCGTTAAGATTTTGATTTTTCTAATTATTTTATCGTGAAGTTCTTAGTAAACGAAATGTTTAGGCTTGTTTTTTGTTTCATTCTAATGAATCCACCTAGTTTTTGTTGTCATAATCAGTGTATTAAATTTCGATGGGTGACATTTTCATTGATATTTCCACATGTCCATGGATATTAACATAATGGGTGGATGAACATTTCCATTATATTGTGAAAAAATAGATGAAACATCAGATAAAAGTAACAAAATGTCACTAATGAGATCTCGACATTTTAAACTTTGGTCATAATGTCATGATTTTGTTAACTTGTGCGACCTGGGTTTACAGGAAAACGCAAGGATAGATCTGATGAGGAGTCAGATCACTCCAACAAGAAACTTCTCATTCCAGTGAACGATGACTTTAGGTAATCTCTTAGAATTATTTTAGATTACTTGAAGGACATAGTAGTTGTTGTCTACTTACTGTAGATGCAAAGTGAAAAAAAAAACTACTTGTATAATCACCAACTTCTGGCTAAAAAAGAAATTTAATTATAATTCAGTCCTCGACTATCATAAGTAGCAAGCAAGTTCATGTGACTAAATTATGAATTACCTTGGAATTAAACAAATCAAGTTCTGTGTGGCTTCTAGCCCCTTAGTATTGGCAAAATAATAATAAATCAAAGCTCGAATTTACTTGATTCCGTGCTTTTGTTTTCTTTGCCAAGAAAGAATCGAATTTAATACTCCAAATAACAACCCCCCCCCCCCTCCCAAAAAAAAAAAAAAAAAAAAAATCTTATTTGAACTCGTCGGGGTTAAAATCAGAAGAAACATCTAGAATAAATAGCTGGGTTCCTTTGGAAGTCTAGCTCAAAGAATTGACGACTAACTCACTTCAAACTTTTGCCAGTCTTACAGATGTAGTAGCTATGGATTGTGAAATGGTTGGCGTGGGCCAAGGTAACAAAAGCGCCCTTGGACGAGTTACAGTGGTATTCAGTCTTTCATCCAATCCTTTTTGAATTTGAGCACCTGTTATTCGTATCCATGTATTTGGTTTTTTAGCATACACGTGCAGAGGCAGACTCTTTATACCTCCTTCAATCAGGAGAGTGGATGGATTATTATTATTATTATTGTCTTTTTGGAGGGGTTGATAGTTAAAACTTTCATTGTCATATGTAGCTGCCTCTTGGGGCACCAAAGAGTGACGTTTAACTTTTATATGTTATTAGTTGCTAACAGTACTGCCAATTAATGACAGGTAAACAAATGGGGGAATGTTATATACGATGAGTTTGTACGTCCTATAGAGCGTGTGGTTGACTTTCGGACTGAAATTAGTGGCATAAGACCCTGCGACCTGAGGAAAGGTGACCTTAGTTTTCCTTATTTCTTTTAATATGTATATTTGGTTGTTTGCATGTCTTAATACAATAGTACTCAGCTACCTAACATCTTTACCTAACAAAAAGCATTCTAGGGAAGAGATTGGAATCATCTGTTTCCTTGGAGTGTTTACAAGGATGCCTGATTTCTAGCTATGTACAATTATCTCTGAGGAAAGTAATGCTAGGTACTAAGAGGGAAGTGAAAGTGTGAAATCCCACATCGGTTGGAAAGGAGAACGAAATATTCTTTATAAGGGTGTGGAAATCTCTCCCTAGCAGACGCGTTTTAAAATCTTGAGGGAAAGCCCCGTAGAGGAAGCCCAAAGAGGACAATATCTGCTAGCGGTGGGCTTGAGCTGTTTCAGAAAGTTTGAGTAGGTAGATTATGAAAAGTAAATTTAGGGTATTGTACTTTGCCCCTTGCTTTCAACAAGATGGCCTGAGATTTGGATTTTTTAAGTTTCTTGCGCTCAATCAGTCTTTCATCCTCTGATTTCCAATTGGGATTTACATTTTTTACGTTTACTTTAGGTTTCGTAATATCATTGACATAATCAATTTAATTTTTCAATTTCAGCAAAGGATTTTCCAACTGTCCAGAAGAGAGTGGCAGAATTGATTAAAGGAAGGATTCTTGTTGGCCATGCCTTGCGTAATGATCTTAAGGTATCTGGATTAATGTAGTTTATGGTTTAAAGTATAAATCTGAACAGTTAAAGTAAAGTTCTTTTGACAGGCATTGCTCTTGAGTCATCCCAAGAAGGATGTGAGAGATACCTCCGAGTATCAGTTCTTCCAGAGGTAATAATTTTGCTTCCCATTGAACTTTATAACTTCAACCTGTTCGATTCTACTTTGAAAAATATCCGTTCTCAAATGTTTGGTGACACAGGGGAGGATGTAGAAGAGCCCTCCGCCATCTTGCAGCTGAGGTTCTTGGCGTTGAGATTCAAAATGGGGAGCACTGTCCTGTTAGTTTTCTGATCTTTTCACCCTTTATATTTTTAGCTCCTTTTGTTAAAACGCCAAAGAAATCTCTGGGTATTGATTAACGAACATGAGTTGACGTAGTGGTCAATTACGGTCATAAAAATGAAAAGGCTTAGAAAGAATGGATTCAAGCCATGATGACAACCTACTTAGGATTTTATACCTGACTAGTTTTCTTGACAACCAAATATAATAGGGTTTAGCTGTTATCGTGAAACTAGTCGAAGTTTTTGCAAGCTATGTTACTTGTTTTCATCTTAAGATTCATGACCACCAAAAGCGAGGACTCCCATGTCTGACCTGATTTTGCAAATTCTGGGAATCTGTATATCGTTCGAGCTTCCTCTATTACTTTAACGTCCTAAGCCCACCCCTAGCAGATATTGTCTTCTTTTGGCTTTCCCTTTCGGGCTTCCCCTCGAGGCTTTAAAACGCGTCTTTCAGAGTTCGGAACCTCTGCTCATCTAGATACTGTCCTCTTTGGGCTTTCCCTTTCGGGCTTCCCCTCAAGGTTTTTGGGCCTTCCCTTATGGGTTTCCCCATTACGTGTTTGATAGGGAAAGGTATCCACATCCTTATAAAGGGTGCTTCGTTCTCCTCTCCAATCAACGTGGGATATCACAATTACTATCGATGCCAACAGCTTGCAAGAAATTTTATTCAGACCGACCTTCCAAATGTTTTACCATTCTGTCATGGGACATTTTGTTTTGAAAGATCTGTGAAAATTTGGCTGAATTTTGTTCTGTAGGTAGAAGATGCTCGCTCTGCAATGCTGCTCTATCAAAAGAAAAGTAAGGAGTGGGAAAAGAGTGTCAAAGCTGAAGTAAAGCTTAAATTGAAGCAGAAGAAACGCAAGCCAAGGAAGAAATCCAAGGATGGAGGTGGTGTTGAATAAACGATCAAACTCCTGATATCTTAATCTGATGCAGATCTTACAAAAATGTGGAACTTGCTGCCGTAGAATTGAGTAGAGATTATAGTCATTCTTTATTTTGAGTGAGACCATTGGCCTGTGTTCTTGGCCAAATTTTGATCTTCAAGCTCAAGAACTACAGGTTACTAATATTGTACCGATACGTCAACTTAATATCGTAAAGCAACTTTTAATCTCAAACACAATCACGTGTCTCGTATTGATCTAATTTTGGTCTAGTTAGATACACAAGTAAAGCTACTATAGCGTTAAAGTGCACTAAATACCTTCTCACTTGATCTTATATCGC

mRNA sequence

CCTTCCTCTCTTATCCCGTTGAGGGCCGCCGGGCGAGAAGACGGCCGAAGTCGACAGGTATTAGTAGTATGTGAATTGCGGGAGTTGGCCTTCGAAGTGGAGCTTCAAGATTATGGAGTCTCAGCTCAAGAAGAGAGCTAAACCCAAATTGCTGAACCCTAATTGGGCGCTACTCCAACAAAAACTGAACCCTCATGGTTCAAGGCGATCCTCCAGTGTACCGAAATCCGAAGCCTCATCAAAGACCCTTTTAGGAAAACGCAAGGATAGATCTGATGAGGAGTCAGATCACTCCAACAAGAAACTTCTCATTCCAGTGAACGATGACTTTAGTCTTACAGATGTAGTAGCTATGGATTGTGAAATGGTTGGCGTGGGCCAAGGTAACAAAAGCGCCCTTGGACGAGTTACAGTGGTAAACAAATGGGGGAATGTTATATACGATGAGTTTGTACGTCCTATAGAGCGTGTGGTTGACTTTCGGACTGAAATTAGTGGCATAAGACCCTGCGACCTGAGGAAAGCAAAGGATTTTCCAACTGTCCAGAAGAGAGTGGCAGAATTGATTAAAGGAAGGATTCTTGTTGGCCATGCCTTGCGTAATGATCTTAAGGCATTGCTCTTGAGTCATCCCAAGAAGGATGTGAGAGATACCTCCGAGTATCAGTTCTTCCAGAGGGGAGGATGTAGAAGAGCCCTCCGCCATCTTGCAGCTGAGGTTCTTGGCGTTGAGATTCAAAATGGGGAGCACTGTCCTGTAGAAGATGCTCGCTCTGCAATGCTGCTCTATCAAAAGAAAAGTAAGGAGTGGGAAAAGAGTGTCAAAGCTGAAGTAAAGCTTAAATTGAAGCAGAAGAAACGCAAGCCAAGGAAGAAATCCAAGGATGGAGGTGGTGTTGAATAAACGATCAAACTCCTGATATCTTAATCTGATGCAGATCTTACAAAAATGTGGAACTTGCTGCCGTAGAATTGAGTAGAGATTATAGTCATTCTTTATTTTGAGTGAGACCATTGGCCTGTGTTCTTGGCCAAATTTTGATCTTCAAGCTCAAGAACTACAGGTTACTAATATTGTACCGATACGTCAACTTAATATCGTAAAGCAACTTTTAATCTCAAACACAATCACGTGTCTCGTATTGATCTAATTTTGGTCTAGTTAGATACACAAGTAAAGCTACTATAGCGTTAAAGTGCACTAAATACCTTCTCACTTGATCTTATATCGC

Coding sequence (CDS)

ATGGAGTCTCAGCTCAAGAAGAGAGCTAAACCCAAATTGCTGAACCCTAATTGGGCGCTACTCCAACAAAAACTGAACCCTCATGGTTCAAGGCGATCCTCCAGTGTACCGAAATCCGAAGCCTCATCAAAGACCCTTTTAGGAAAACGCAAGGATAGATCTGATGAGGAGTCAGATCACTCCAACAAGAAACTTCTCATTCCAGTGAACGATGACTTTAGTCTTACAGATGTAGTAGCTATGGATTGTGAAATGGTTGGCGTGGGCCAAGGTAACAAAAGCGCCCTTGGACGAGTTACAGTGGTAAACAAATGGGGGAATGTTATATACGATGAGTTTGTACGTCCTATAGAGCGTGTGGTTGACTTTCGGACTGAAATTAGTGGCATAAGACCCTGCGACCTGAGGAAAGCAAAGGATTTTCCAACTGTCCAGAAGAGAGTGGCAGAATTGATTAAAGGAAGGATTCTTGTTGGCCATGCCTTGCGTAATGATCTTAAGGCATTGCTCTTGAGTCATCCCAAGAAGGATGTGAGAGATACCTCCGAGTATCAGTTCTTCCAGAGGGGAGGATGTAGAAGAGCCCTCCGCCATCTTGCAGCTGAGGTTCTTGGCGTTGAGATTCAAAATGGGGAGCACTGTCCTGTAGAAGATGCTCGCTCTGCAATGCTGCTCTATCAAAAGAAAAGTAAGGAGTGGGAAAAGAGTGTCAAAGCTGAAGTAAAGCTTAAATTGAAGCAGAAGAAACGCAAGCCAAGGAAGAAATCCAAGGATGGAGGTGGTGTTGAATAA

Protein sequence

MESQLKKRAKPKLLNPNWALLQQKLNPHGSRRSSSVPKSEASSKTLLGKRKDRSDEESDHSNKKLLIPVNDDFSLTDVVAMDCEMVGVGQGNKSALGRVTVVNKWGNVIYDEFVRPIERVVDFRTEISGIRPCDLRKAKDFPTVQKRVAELIKGRILVGHALRNDLKALLLSHPKKDVRDTSEYQFFQRGGCRRALRHLAAEVLGVEIQNGEHCPVEDARSAMLLYQKKSKEWEKSVKAEVKLKLKQKKRKPRKKSKDGGGVE

Homology

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BLAST of Carg17072 vs. NCBI nr
Match: XP_022935723.1 (RNA exonuclease 4 [Cucurbita moschata])

HSP 1 Score: 465.3 bits (1196), Expect = 1.4e-127
Identity = 261/263 (99.24%), Postives = 262/263 (99.62%), Query Frame = 0


Query: 1   MESQLKKRAKPKLLNPNWALLQQKLNPHGSRRSSSVPKSEASSKTLLGKRKDRSDEESDH 60
           MESQLKK AKPKLLNPNWALLQQKLNPHGS+RSSSVPKSEASSKTLLGKRKDRSDEESDH
Sbjct: 1   MESQLKKSAKPKLLNPNWALLQQKLNPHGSKRSSSVPKSEASSKTLLGKRKDRSDEESDH 60

Query: 61  SNKKLLIPVNDDFSLTDVVAMDCEMVGVGQGNKSALGRVTVVNKWGNVIYDEFVRPIERV 120
           SNKKLLIPVNDDFSLTDVVAMDCEMVGVGQGNKSALGRVTVVNKWGNVIYDEFVRPIERV
Sbjct: 61  SNKKLLIPVNDDFSLTDVVAMDCEMVGVGQGNKSALGRVTVVNKWGNVIYDEFVRPIERV 120

Query: 121 VDFRTEISGIRPCDLRKAKDFPTVQKRVAELIKGRILVGHALRNDLKALLLSHPKKDVRD 180
           VDFRTEISGIRPCDLRKAKDFPTVQKRVAELIKGRILVGHALRNDLKALLLSHPKKDVRD
Sbjct: 121 VDFRTEISGIRPCDLRKAKDFPTVQKRVAELIKGRILVGHALRNDLKALLLSHPKKDVRD 180

Query: 181 TSEYQFFQRGGCRRALRHLAAEVLGVEIQNGEHCPVEDARSAMLLYQKKSKEWEKXXXXX 240
           TSEYQFFQRGGCRRALRHLAAEVLGVEIQNGEHCPVEDARSAMLLYQKKSKEWEKXXXXX
Sbjct: 181 TSEYQFFQRGGCRRALRHLAAEVLGVEIQNGEHCPVEDARSAMLLYQKKSKEWEKXXXXX 240

Query: 241 XXXXXXXXXXXXXXXXXXGGGVE 264
           XXXXXXXXXXXXXXXXXXGGGVE
Sbjct: 241 XXXXXXXXXXXXXXXXXXGGGVE 263

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BLAST of Carg17072 vs. NCBI nr
Match: XP_023535411.1 (RNA exonuclease 4 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 463.4 bits (1191), Expect = 5.2e-127
Identity = 260/263 (98.86%), Postives = 261/263 (99.24%), Query Frame = 0


Query: 1   MESQLKKRAKPKLLNPNWALLQQKLNPHGSRRSSSVPKSEASSKTLLGKRKDRSDEESDH 60
           MESQLKK AKPKLLNPNWALLQQKLNPHGS+RSSSVPKSEASS TLLGKRKDRSDEESDH
Sbjct: 1   MESQLKKSAKPKLLNPNWALLQQKLNPHGSKRSSSVPKSEASSNTLLGKRKDRSDEESDH 60

Query: 61  SNKKLLIPVNDDFSLTDVVAMDCEMVGVGQGNKSALGRVTVVNKWGNVIYDEFVRPIERV 120
           SNKKLLIPVNDDFSLTDVVAMDCEMVGVGQGNKSALGRVTVVNKWGNVIYDEFVRPIERV
Sbjct: 61  SNKKLLIPVNDDFSLTDVVAMDCEMVGVGQGNKSALGRVTVVNKWGNVIYDEFVRPIERV 120

Query: 121 VDFRTEISGIRPCDLRKAKDFPTVQKRVAELIKGRILVGHALRNDLKALLLSHPKKDVRD 180
           VDFRTEISGIRPCDLRKAKDFPTVQKRVAELIKGRILVGHALRNDLKALLLSHPKKDVRD
Sbjct: 121 VDFRTEISGIRPCDLRKAKDFPTVQKRVAELIKGRILVGHALRNDLKALLLSHPKKDVRD 180

Query: 181 TSEYQFFQRGGCRRALRHLAAEVLGVEIQNGEHCPVEDARSAMLLYQKKSKEWEKXXXXX 240
           TSEYQFFQRGGCRRALRHLAAEVLGVEIQNGEHCPVEDARSAMLLYQKKSKEWEKXXXXX
Sbjct: 181 TSEYQFFQRGGCRRALRHLAAEVLGVEIQNGEHCPVEDARSAMLLYQKKSKEWEKXXXXX 240

Query: 241 XXXXXXXXXXXXXXXXXXGGGVE 264
           XXXXXXXXXXXXXXXXXXGGGVE
Sbjct: 241 XXXXXXXXXXXXXXXXXXGGGVE 263

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BLAST of Carg17072 vs. NCBI nr
Match: XP_022976561.1 (RNA exonuclease 4 [Cucurbita maxima])

HSP 1 Score: 458.0 bits (1177), Expect = 2.2e-125
Identity = 257/263 (97.72%), Postives = 261/263 (99.24%), Query Frame = 0


Query: 1   MESQLKKRAKPKLLNPNWALLQQKLNPHGSRRSSSVPKSEASSKTLLGKRKDRSDEESDH 60
           MESQLKK AK KLLNPNWALLQQKLNPHGS+RSS+VPKSEASSKTLLGKRKDRSDEESDH
Sbjct: 1   MESQLKKSAKSKLLNPNWALLQQKLNPHGSKRSSTVPKSEASSKTLLGKRKDRSDEESDH 60

Query: 61  SNKKLLIPVNDDFSLTDVVAMDCEMVGVGQGNKSALGRVTVVNKWGNVIYDEFVRPIERV 120
           SNKKLLIPVNDDFSLTDVVAMDCEMVGVGQGNKSALGRVTVVNKWGNVIY+EFVRPIERV
Sbjct: 61  SNKKLLIPVNDDFSLTDVVAMDCEMVGVGQGNKSALGRVTVVNKWGNVIYNEFVRPIERV 120

Query: 121 VDFRTEISGIRPCDLRKAKDFPTVQKRVAELIKGRILVGHALRNDLKALLLSHPKKDVRD 180
           VDFRTEISGIRPCDLRKAKDFPTVQKRVAELIKGRILVGHALRNDLKALLLSHPKKDVRD
Sbjct: 121 VDFRTEISGIRPCDLRKAKDFPTVQKRVAELIKGRILVGHALRNDLKALLLSHPKKDVRD 180

Query: 181 TSEYQFFQRGGCRRALRHLAAEVLGVEIQNGEHCPVEDARSAMLLYQKKSKEWEKXXXXX 240
           TSEYQFFQRGGCRR+LRHLAAEVLGVEIQNGEHCPVEDARSAMLLYQKKSKEWEKXXXXX
Sbjct: 181 TSEYQFFQRGGCRRSLRHLAAEVLGVEIQNGEHCPVEDARSAMLLYQKKSKEWEKXXXXX 240

Query: 241 XXXXXXXXXXXXXXXXXXGGGVE 264
           XXXXXXXXXXXXXXXXXXGGGVE
Sbjct: 241 XXXXXXXXXXXXXXXXXXGGGVE 263

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BLAST of Carg17072 vs. NCBI nr
Match: XP_004146040.1 (PREDICTED: RNA exonuclease 4 [Cucumis sativus] >KGN55095.1 hypothetical protein Csa_4G628920 [Cucumis sativus])

HSP 1 Score: 420.2 bits (1079), Expect = 5.0e-114
Identity = 208/235 (88.51%), Postives = 221/235 (94.04%), Query Frame = 0


Query: 1   MESQLKKRAKPKLLNPNWALLQQKLNPHGSRRSSSVPKSEASSKTLLGKRKDRSDEESDH 60
           M+SQLKK  KPKLLNPNWALLQQKLNPHGS  S++V KSEASSKTLLGKRK+RSD ES+H
Sbjct: 1   MKSQLKKNPKPKLLNPNWALLQQKLNPHGSNHSNTVLKSEASSKTLLGKRKERSDVESNH 60

Query: 61  SNKKLLIPVNDDFSLTDVVAMDCEMVGVGQGNKSALGRVTVVNKWGNVIYDEFVRPIERV 120
           S K +LIPVNDDFSLTD VAMDCEMVGVGQGNKSALGRVT+VNKWGNVIYDEFVRPIERV
Sbjct: 61  SQKNILIPVNDDFSLTDEVAMDCEMVGVGQGNKSALGRVTLVNKWGNVIYDEFVRPIERV 120

Query: 121 VDFRTEISGIRPCDLRKAKDFPTVQKRVAELIKGRILVGHALRNDLKALLLSHPKKDVRD 180
           VDFRT+ISGIRPCDL+KAKDFPTVQKRVAELIKG++LVGHALRNDLKALLLSHPK DVRD
Sbjct: 121 VDFRTQISGIRPCDLKKAKDFPTVQKRVAELIKGKLLVGHALRNDLKALLLSHPKNDVRD 180

Query: 181 TSEYQFFQRGGCRRALRHLAAEVLGVEIQNGEHCPVEDARSAMLLYQKKSKEWEK 236
           TSEYQFFQ+ GC+RALRHLAAE L VEIQNGEHCPVEDARSAMLLYQKK KEWEK
Sbjct: 181 TSEYQFFQKEGCKRALRHLAAEFLSVEIQNGEHCPVEDARSAMLLYQKKRKEWEK 235

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BLAST of Carg17072 vs. NCBI nr
Match: XP_008463709.1 (PREDICTED: RNA exonuclease 4 [Cucumis melo] >ADN33800.1 RNA exonuclease [Cucumis melo subsp. melo])

HSP 1 Score: 418.3 bits (1074), Expect = 1.9e-113
Identity = 209/237 (88.19%), Postives = 221/237 (93.25%), Query Frame = 0


Query: 1   MESQLKKRAKPKLLNPNWALLQQKLNPHGSRRS--SSVPKSEASSKTLLGKRKDRSDEES 60
           M SQLKK  KPKLLNPNWA+LQQKL PHGS  S  S+VPKSEASSKTLLGKRK+RSD ES
Sbjct: 1   MTSQLKKNPKPKLLNPNWAILQQKLKPHGSNHSKASTVPKSEASSKTLLGKRKERSDVES 60

Query: 61  DHSNKKLLIPVNDDFSLTDVVAMDCEMVGVGQGNKSALGRVTVVNKWGNVIYDEFVRPIE 120
           +HS K +LIPVNDDFSLTD VAMDCEMVGVGQGNKSALGRVT+VNKWGNVIYDEFVRPIE
Sbjct: 61  NHSQKNILIPVNDDFSLTDEVAMDCEMVGVGQGNKSALGRVTLVNKWGNVIYDEFVRPIE 120

Query: 121 RVVDFRTEISGIRPCDLRKAKDFPTVQKRVAELIKGRILVGHALRNDLKALLLSHPKKDV 180
           RVVDFRT+ISGIRPCDL+KAKDFPTVQKRVAELIKG+ILVGHALRNDLKALLLSHPK DV
Sbjct: 121 RVVDFRTQISGIRPCDLKKAKDFPTVQKRVAELIKGKILVGHALRNDLKALLLSHPKNDV 180

Query: 181 RDTSEYQFFQRGGCRRALRHLAAEVLGVEIQNGEHCPVEDARSAMLLYQKKSKEWEK 236
           RDTSEYQFFQ+ GC+RALRHLAAE LGV+IQNGEHCPVEDARSAMLLYQKK KEWEK
Sbjct: 181 RDTSEYQFFQKEGCKRALRHLAAEFLGVQIQNGEHCPVEDARSAMLLYQKKRKEWEK 237

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BLAST of Carg17072 vs. TAIR10
Match: AT3G15080.1 (Polynucleotidyl transferase, ribonuclease H-like superfamily protein)

HSP 1 Score: 320.9 bits (821), Expect = 7.5e-88
Identity = 164/243 (67.49%), Postives = 193/243 (79.42%), Query Frame = 0


Query: 1   MESQLKKRAKPKL------LNPNWALLQQKL--NPHGSRRSSSVPKSEASSKTLLGKRKD 60
           M S LK++ K K+      LNPNW+LLQQKL  + HG+ R SS P++ +S   +LGKRK+
Sbjct: 1   MSSDLKRKPKKKITPKPVQLNPNWSLLQQKLKSDSHGNTRKSSNPENPSS---ILGKRKE 60

Query: 61  RSDEESDHSNKKLLIPVNDDFSLTDVVAMDCEMVGVGQGNKSALGRVTVVNKWGNVIYDE 120
           R D E D      L PVNDD SLTD VAMDCEMVGV QG KSALGRVT+VNKWGNV+YDE
Sbjct: 61  RPDSEVDVPKINPLAPVNDDSSLTDEVAMDCEMVGVSQGTKSALGRVTLVNKWGNVLYDE 120

Query: 121 FVRPIERVVDFRTEISGIRPCDLRKAKDFPTVQKRVAELIKGRILVGHALRNDLKALLLS 180
           FVRP+E VVDFRT ISGIRP DLRKAKDF   Q +VAELIKG+ILVGHAL NDLKALLL+
Sbjct: 121 FVRPVEHVVDFRTSISGIRPRDLRKAKDFRVAQTKVAELIKGKILVGHALHNDLKALLLT 180

Query: 181 HPKKDVRDTSEYQFFQRGGCRRALRHLAAEVLGVEIQNGEHCPVEDARSAMLLYQKKSKE 236
           HPKKD+RDT EYQ F +G  R++L+HLA+E+LG +IQNGEHCP++DAR+AM+LYQK  KE
Sbjct: 181 HPKKDIRDTGEYQPFLKGKTRKSLKHLASEILGADIQNGEHCPIDDARAAMMLYQKNRKE 240

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BLAST of Carg17072 vs. TAIR10
Match: AT3G27970.1 (Exonuclease family protein)

HSP 1 Score: 96.7 bits (239), Expect = 2.3e-20
Identity = 57/167 (34.13%), Postives = 86/167 (51.50%), Query Frame = 0


Query: 78  VVAMDCEMVGVG-QGNKSALGRVTVVNKWGNVIYDEFVRPIERVVDFRTEISGIRPCDLR 137
           VVA+ C+MVG G  G+     RV + ++  NVI+  +V+P   V  +R E +GIRP +LR
Sbjct: 135 VVALSCKMVGGGSDGSLDLCARVCITDESDNVIFHTYVKPSMAVTSYRYETTGIRPENLR 194

Query: 138 KAKDFPTVQKRVAELI--------------KGRILVGHALRNDLKALLLSHPKKDVRDTS 197
            A     VQ+++ E +              K RILVGH L +DL  L L +P   +RDT+
Sbjct: 195 DAMPLKQVQRKIQEFLCNGEPMWKIRPRGGKARILVGHGLDHDLDRLQLEYPSSMIRDTA 254

Query: 198 EY-QFFQRGGCRRALRHLAAEVLGVEIQNGEHCPVEDARSAMLLYQK 229
           +Y    +      +L++L    LG ++  G   P ED  + M LY +
Sbjct: 255 KYPPLMKTSKLSNSLKYLTQAYLGYDVHFGIQDPYEDCVATMRLYTR 301

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BLAST of Carg17072 vs. TAIR10
Match: AT5G40310.1 (Exonuclease family protein)

HSP 1 Score: 93.6 bits (231), Expect = 2.0e-19
Identity = 57/167 (34.13%), Postives = 86/167 (51.50%), Query Frame = 0


Query: 78  VVAMDCEMVGVG-QGNKSALGRVTVVNKWGNVIYDEFVRPIERVVDFRTEISGIRPCDLR 137
           VVA+ C+MVG G  G+     RV + ++  NV++  +V+P   V ++R E++GIRP +LR
Sbjct: 126 VVALSCKMVGGGSDGSLDLCARVCITDESENVVFHTYVKPTIPVTNYRYEMTGIRPENLR 185

Query: 138 KAKDFPTVQKRVAELI--------------KGRILVGHALRNDLKALLLSHPKKDVRDTS 197
            A      Q++V E +              K RILVGH L N L +L L +    +RDT+
Sbjct: 186 DAMRLKHAQRKVQEFLCNGEPMWKIRPRNGKARILVGHGLDNHLDSLQLEYSSSMIRDTA 245

Query: 198 EY-QFFQRGGCRRALRHLAAEVLGVEIQNGEHCPVEDARSAMLLYQK 229
           EY    +      +L++L    LG +I  G   P ED  + M LY +
Sbjct: 246 EYPPLMKSSKLSNSLKYLTQAYLGYDIHVGIQDPYEDCVATMRLYTR 292

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BLAST of Carg17072 vs. TAIR10
Match: AT2G48100.1 (Exonuclease family protein)

HSP 1 Score: 92.0 bits (227), Expect = 5.7e-19
Identity = 57/160 (35.62%), Postives = 87/160 (54.37%), Query Frame = 0


Query: 79  VAMDCEMVGVG-QGNKSALGRVTVVNKWGNVIYDEFVRPIERVVDFRTEISGIRPCDLRK 138
           +A+DCEMVG G  G       V +V+   NVI+   V+P+  V D+R EI+G+   DL+ 
Sbjct: 133 MALDCEMVGGGADGTIDQCASVCLVDDDENVIFSTHVQPLLPVTDYRHEITGLTKEDLKD 192

Query: 139 AKDFPTVQKRVAELIKG--------RILVGHALRNDLKALLLSHPKKDVRDTSEY-QFFQ 198
                 V++RV   + G         +LVGH LR+D+  L L +P   +RDT++Y    +
Sbjct: 193 GMPLEHVRERVFSFLCGGQNDGAGRLLLVGHDLRHDMSCLKLEYPSHLLRDTAKYVPLMK 252

Query: 199 RGGCRRALRHLAAEVLGVEIQNGEHCPVEDARSAMLLYQK 229
                ++L++L    LG +IQ G+H   ED  SAM LY++
Sbjct: 253 TNLVSQSLKYLTKSYLGYKIQCGKHEVYEDCVSAMRLYKR 292

[Close]

BLAST of Carg17072 vs. TAIR10
Match: AT3G50100.1 (small RNA degrading nuclease 1)

HSP 1 Score: 86.3 bits (212), Expect = 3.1e-17
Identity = 62/156 (39.74%), Postives = 91/156 (58.33%), Query Frame = 0


Query: 76  TDVVAMDCEMVGVGQGNKSALGRVTVVNKWGNVIYDEFVRPIERVVDFRTEISGIRPCDL 135
           T++VA+DCEMV    G +  L RV VV++   VI DEFV+P + VVD+RT+I+GI   D+
Sbjct: 138 TNMVAVDCEMVLCEDGTE-GLVRVGVVDRDLKVILDEFVKPNKPVVDYRTDITGITAEDI 197

Query: 136 RKAK-DFPTVQKRVAELIK-GRILVGHALRNDLKALLLSHPKKDVRDTS-EYQFFQRGGC 195
             A      +Q+ +   +  G ILVGH+L  DL+ L + HPK  V DT+  +++      
Sbjct: 198 ENASLSVVDIQETLQPFLSTGTILVGHSLNRDLEVLKIDHPK--VIDTALVFKYPNTRKL 257

Query: 196 RR-ALRHLAAEVLGVEIQNG--EHCPVEDARSAMLL 226
           RR +L +L   +LG E++     H  V DA +AM L
Sbjct: 258 RRPSLNNLCKSILGYEVRKTGVPHDCVHDASAAMKL 290

[Close]

BLAST of Carg17072 vs. Swiss-Prot
Match: sp|Q91560|REXO4_XENLA (RNA exonuclease 4 OS=Xenopus laevis OX=8355 GN=rexo4 PE=2 SV=2)

HSP 1 Score: 181.8 bits (460), Expect = 9.9e-45
Identity = 88/174 (50.57%), Postives = 123/174 (70.69%), Query Frame = 0


Query: 64  KLLIPVNDDFSLTDVVAMDCEMVGVG-QGNKSALGRVTVVNKWGNVIYDEFVRPIERVVD 123
           K+L+       LT  VAMDCEMVGVG  G +S L RV++VN +G  +YD++V+P ERV D
Sbjct: 220 KILVKERAFEGLTRTVAMDCEMVGVGMDGEESILARVSIVNLFGKCVYDKYVKPTERVTD 279

Query: 124 FRTEISGIRPCDLRKAKDFPTVQKRVAELIKGRILVGHALRNDLKALLLSHPKKDVRDTS 183
           +RT +SGIRP D++K + F  VQK V+E+++GR LVGHA+ NDLK L L HPKK +RDT 
Sbjct: 280 YRTAVSGIRPEDVKKGEPFKVVQKEVSEILRGRTLVGHAVHNDLKILFLDHPKKAIRDTQ 339

Query: 184 EYQFFQR--GGCRRALRHLAAEVLGVEIQNGEHCPVEDARSAMLLYQKKSKEWE 235
           +Y+ F++     R +L+ L  ++L V++Q GEHC V+DA++AM LY  + K WE
Sbjct: 340 KYKPFKQKVKSGRPSLKLLCEKILNVKVQTGEHCSVQDAQAAMRLYTMEKKSWE 393

[Close]

BLAST of Carg17072 vs. Swiss-Prot
Match: sp|Q9GZR2|REXO4_HUMAN (RNA exonuclease 4 OS=Homo sapiens OX=9606 GN=REXO4 PE=1 SV=2)

HSP 1 Score: 179.5 bits (454), Expect = 4.9e-44
Identity = 85/163 (52.15%), Postives = 120/163 (73.62%), Query Frame = 0


Query: 75  LTDVVAMDCEMVGVG-QGNKSALGRVTVVNKWGNVIYDEFVRPIERVVDFRTEISGIRPC 134
           LT  +A+DCEMVGVG +G +S   RV++VN++G  +YD++V+P E V D+RT +SGIRP 
Sbjct: 240 LTRALALDCEMVGVGPKGEESMAARVSIVNQYGKCVYDKYVKPTEPVTDYRTAVSGIRPE 299

Query: 135 DLRKAKDFPTVQKRVAELIKGRILVGHALRNDLKALLLSHPKKDVRDTSEYQFF--QRGG 194
           +L++ ++   VQK VAE++KGRILVGHAL NDLK L L HPKK +RDT +Y+ F  Q   
Sbjct: 300 NLKQGEELEVVQKEVAEMLKGRILVGHALHNDLKVLFLDHPKKKIRDTQKYKPFKSQVKS 359

Query: 195 CRRALRHLAAEVLGVEIQNGEHCPVEDARSAMLLYQKKSKEWE 235
            R +LR L+ ++LG+++Q  EHC ++DA++AM LY    KEWE
Sbjct: 360 GRPSLRLLSEKILGLQVQQAEHCSIQDAQAAMRLYVMVKKEWE 402

[Close]

BLAST of Carg17072 vs. Swiss-Prot
Match: sp|Q6PAQ4|REXO4_MOUSE (RNA exonuclease 4 OS=Mus musculus OX=10090 GN=Rexo4 PE=2 SV=2)

HSP 1 Score: 177.6 bits (449), Expect = 1.9e-43
Identity = 82/164 (50.00%), Postives = 122/164 (74.39%), Query Frame = 0


Query: 75  LTDVVAMDCEMVGVG-QGNKSALGRVTVVNKWGNVIYDEFVRPIERVVDFRTEISGIRPC 134
           LT  +A+DCEMVGVG +G +S   RV++VN++G  +YD++V+P E V D+RT +SGIRP 
Sbjct: 250 LTKALALDCEMVGVGPKGEESIAARVSIVNQYGKCVYDKYVKPTEPVTDYRTAVSGIRPE 309

Query: 135 DLRKAKDFPTVQKRVAELIKGRILVGHALRNDLKALLLSHPKKDVRDTSEYQFFQ---RG 194
           +L++ ++F  V+K VAE++KGRILVGHAL NDLK L L HPKK +RDT +++ F+   + 
Sbjct: 310 NLKQGEEFEVVKKEVAEMLKGRILVGHALHNDLKVLFLDHPKKKIRDTQKFKPFRSRVKS 369

Query: 195 GCRRALRHLAAEVLGVEIQNGEHCPVEDARSAMLLYQKKSKEWE 235
           G R +L+ L+ ++LG+ +Q  EHC ++DA++AM LY    +EWE
Sbjct: 370 G-RPSLKRLSEKILGIRVQQAEHCSIQDAQAAMRLYVMVKREWE 412

[Close]

BLAST of Carg17072 vs. Swiss-Prot
Match: sp|Q6DEW6|REXO4_XENTR (RNA exonuclease 4 OS=Xenopus tropicalis OX=8364 GN=rexo4 PE=2 SV=1)

HSP 1 Score: 177.2 bits (448), Expect = 2.4e-43
Identity = 89/182 (48.90%), Postives = 124/182 (68.13%), Query Frame = 0


Query: 56  EESDHSNKKLLIPVNDDFSLTDVVAMDCEMVGVG-QGNKSALGRVTVVNKWGNVIYDEFV 115
           E +  + +K+L+       LT  VAMDCEMVGVG  G +S L RV++VN +G  +YD++V
Sbjct: 206 ETAPPTAEKVLVKEKAFEGLTRTVAMDCEMVGVGLDGEESMLARVSIVNLFGKCVYDKYV 265

Query: 116 RPIERVVDFRTEISGIRPCDLRKAKDFPTVQKRVAELIKGRILVGHALRNDLKALLLSHP 175
           RP ERV D+RT +SGIRP D++  + F  VQ  VAE+++GR LVGHA+ NDLK L L HP
Sbjct: 266 RPTERVTDYRTAVSGIRPDDIKNGEAFKDVQAEVAEILRGRTLVGHAVHNDLKILFLDHP 325

Query: 176 KKDVRDTSEYQFFQR--GGCRRALRHLAAEVLGVEIQNGEHCPVEDARSAMLLYQKKSKE 235
           KK +RDT +Y+ F+      R +L+ L  ++L V++Q GEHC V+DA++AM LY  + K 
Sbjct: 326 KKAIRDTQKYKPFKEKVKSGRPSLKLLCEKILNVKVQTGEHCSVQDAQAAMRLYTMEKKC 385

[Close]

BLAST of Carg17072 vs. Swiss-Prot
Match: sp|Q08237|REXO4_YEAST (RNA exonuclease 4 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=REX4 PE=1 SV=1)

HSP 1 Score: 169.1 bits (427), Expect = 6.6e-41
Identity = 84/161 (52.17%), Postives = 121/161 (75.16%), Query Frame = 0


Query: 79  VAMDCEMVGVG-QGNKSALGRVTVVNKWGNVIYDEFVRPIERVVDFRTEISGIRPCDLRK 138
           +AMDCE VGVG +G +SAL R+++VN +G+V+ DEFV+P E+VV++RT +SGI+P  ++ 
Sbjct: 122 IAMDCEFVGVGPEGKESALARISIVNYFGHVVLDEFVKPREKVVEWRTWVSGIKPEHMKN 181

Query: 139 AKDFPTVQKRVAELIKGRILVGHALRNDLKALLLSHPKKDVRDTSEYQFFQR---GGCRR 198
           A  F   QK+ A++++GRILVGHAL++DL+AL+LSHPK  +RDTS +  F++    G   
Sbjct: 182 AITFKEAQKKTADILEGRILVGHALKHDLEALMLSHPKSLLRDTSRHLPFRKLYAKGKTP 241

Query: 199 ALRHLAAEVLGVEIQNGEHCPVEDARSAMLLYQKKSKEWEK 236
           +L+ L  EVL + IQ GEH  VEDAR+ MLLY+K+  E+EK
Sbjct: 242 SLKKLTREVLKISIQEGEHSSVEDARATMLLYKKEKTEFEK 282

[Close]

BLAST of Carg17072 vs. TrEMBL
Match: tr|A0A0A0KZK3|A0A0A0KZK3_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G628920 PE=4 SV=1)

HSP 1 Score: 420.2 bits (1079), Expect = 3.3e-114
Identity = 208/235 (88.51%), Postives = 221/235 (94.04%), Query Frame = 0


Query: 1   MESQLKKRAKPKLLNPNWALLQQKLNPHGSRRSSSVPKSEASSKTLLGKRKDRSDEESDH 60
           M+SQLKK  KPKLLNPNWALLQQKLNPHGS  S++V KSEASSKTLLGKRK+RSD ES+H
Sbjct: 1   MKSQLKKNPKPKLLNPNWALLQQKLNPHGSNHSNTVLKSEASSKTLLGKRKERSDVESNH 60

Query: 61  SNKKLLIPVNDDFSLTDVVAMDCEMVGVGQGNKSALGRVTVVNKWGNVIYDEFVRPIERV 120
           S K +LIPVNDDFSLTD VAMDCEMVGVGQGNKSALGRVT+VNKWGNVIYDEFVRPIERV
Sbjct: 61  SQKNILIPVNDDFSLTDEVAMDCEMVGVGQGNKSALGRVTLVNKWGNVIYDEFVRPIERV 120

Query: 121 VDFRTEISGIRPCDLRKAKDFPTVQKRVAELIKGRILVGHALRNDLKALLLSHPKKDVRD 180
           VDFRT+ISGIRPCDL+KAKDFPTVQKRVAELIKG++LVGHALRNDLKALLLSHPK DVRD
Sbjct: 121 VDFRTQISGIRPCDLKKAKDFPTVQKRVAELIKGKLLVGHALRNDLKALLLSHPKNDVRD 180

Query: 181 TSEYQFFQRGGCRRALRHLAAEVLGVEIQNGEHCPVEDARSAMLLYQKKSKEWEK 236
           TSEYQFFQ+ GC+RALRHLAAE L VEIQNGEHCPVEDARSAMLLYQKK KEWEK
Sbjct: 181 TSEYQFFQKEGCKRALRHLAAEFLSVEIQNGEHCPVEDARSAMLLYQKKRKEWEK 235

[Close]

BLAST of Carg17072 vs. TrEMBL
Match: tr|A0A1S3CJW0|A0A1S3CJW0_CUCME (RNA exonuclease 4 OS=Cucumis melo OX=3656 GN=LOC103501792 PE=4 SV=1)

HSP 1 Score: 418.3 bits (1074), Expect = 1.3e-113
Identity = 209/237 (88.19%), Postives = 221/237 (93.25%), Query Frame = 0


Query: 1   MESQLKKRAKPKLLNPNWALLQQKLNPHGSRRS--SSVPKSEASSKTLLGKRKDRSDEES 60
           M SQLKK  KPKLLNPNWA+LQQKL PHGS  S  S+VPKSEASSKTLLGKRK+RSD ES
Sbjct: 1   MTSQLKKNPKPKLLNPNWAILQQKLKPHGSNHSKASTVPKSEASSKTLLGKRKERSDVES 60

Query: 61  DHSNKKLLIPVNDDFSLTDVVAMDCEMVGVGQGNKSALGRVTVVNKWGNVIYDEFVRPIE 120
           +HS K +LIPVNDDFSLTD VAMDCEMVGVGQGNKSALGRVT+VNKWGNVIYDEFVRPIE
Sbjct: 61  NHSQKNILIPVNDDFSLTDEVAMDCEMVGVGQGNKSALGRVTLVNKWGNVIYDEFVRPIE 120

Query: 121 RVVDFRTEISGIRPCDLRKAKDFPTVQKRVAELIKGRILVGHALRNDLKALLLSHPKKDV 180
           RVVDFRT+ISGIRPCDL+KAKDFPTVQKRVAELIKG+ILVGHALRNDLKALLLSHPK DV
Sbjct: 121 RVVDFRTQISGIRPCDLKKAKDFPTVQKRVAELIKGKILVGHALRNDLKALLLSHPKNDV 180

Query: 181 RDTSEYQFFQRGGCRRALRHLAAEVLGVEIQNGEHCPVEDARSAMLLYQKKSKEWEK 236
           RDTSEYQFFQ+ GC+RALRHLAAE LGV+IQNGEHCPVEDARSAMLLYQKK KEWEK
Sbjct: 181 RDTSEYQFFQKEGCKRALRHLAAEFLGVQIQNGEHCPVEDARSAMLLYQKKRKEWEK 237

[Close]

BLAST of Carg17072 vs. TrEMBL
Match: tr|E5GBF8|E5GBF8_CUCME (RNA exonuclease OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1)

HSP 1 Score: 418.3 bits (1074), Expect = 1.3e-113
Identity = 209/237 (88.19%), Postives = 221/237 (93.25%), Query Frame = 0


Query: 1   MESQLKKRAKPKLLNPNWALLQQKLNPHGSRRS--SSVPKSEASSKTLLGKRKDRSDEES 60
           M SQLKK  KPKLLNPNWA+LQQKL PHGS  S  S+VPKSEASSKTLLGKRK+RSD ES
Sbjct: 1   MTSQLKKNPKPKLLNPNWAILQQKLKPHGSNHSKASTVPKSEASSKTLLGKRKERSDVES 60

Query: 61  DHSNKKLLIPVNDDFSLTDVVAMDCEMVGVGQGNKSALGRVTVVNKWGNVIYDEFVRPIE 120
           +HS K +LIPVNDDFSLTD VAMDCEMVGVGQGNKSALGRVT+VNKWGNVIYDEFVRPIE
Sbjct: 61  NHSQKNILIPVNDDFSLTDEVAMDCEMVGVGQGNKSALGRVTLVNKWGNVIYDEFVRPIE 120

Query: 121 RVVDFRTEISGIRPCDLRKAKDFPTVQKRVAELIKGRILVGHALRNDLKALLLSHPKKDV 180
           RVVDFRT+ISGIRPCDL+KAKDFPTVQKRVAELIKG+ILVGHALRNDLKALLLSHPK DV
Sbjct: 121 RVVDFRTQISGIRPCDLKKAKDFPTVQKRVAELIKGKILVGHALRNDLKALLLSHPKNDV 180

Query: 181 RDTSEYQFFQRGGCRRALRHLAAEVLGVEIQNGEHCPVEDARSAMLLYQKKSKEWEK 236
           RDTSEYQFFQ+ GC+RALRHLAAE LGV+IQNGEHCPVEDARSAMLLYQKK KEWEK
Sbjct: 181 RDTSEYQFFQKEGCKRALRHLAAEFLGVQIQNGEHCPVEDARSAMLLYQKKRKEWEK 237

[Close]

BLAST of Carg17072 vs. TrEMBL
Match: tr|A0A061F8X0|A0A061F8X0_THECC (Polynucleotidyl transferase, ribonuclease H-like superfamily protein isoform 1 OS=Theobroma cacao OX=3641 GN=TCM_031662 PE=4 SV=1)

HSP 1 Score: 337.8 bits (865), Expect = 2.2e-89
Identity = 173/235 (73.62%), Postives = 196/235 (83.40%), Query Frame = 0


Query: 1   MESQLKKRAKPKLLNPNWALLQQKLNPHGSRRSSSVPKSEASSKTLLGKRKDRSDEESDH 60
           M S +KK  K   LNPNWA LQQKL    + R   +P+SE +  ++LGKRK+R   ESD 
Sbjct: 1   MGSDVKKNPKQFQLNPNWAQLQQKLKSAETSRHPKIPQSE-TPNSILGKRKERPTPESDD 60

Query: 61  SNKKLLIPVNDDFSLTDVVAMDCEMVGVGQGNKSALGRVTVVNKWGNVIYDEFVRPIERV 120
           +    LIP NDD SLTDV+AMDCEMVGVGQGNKSALGRV++VNKWGNVIYDEFVRPIERV
Sbjct: 61  AKPNPLIPTNDDSSLTDVLAMDCEMVGVGQGNKSALGRVSLVNKWGNVIYDEFVRPIERV 120

Query: 121 VDFRTEISGIRPCDLRKAKDFPTVQKRVAELIKGRILVGHALRNDLKALLLSHPKKDVRD 180
           VDFRT+ISGIRP DL+KAKDF  VQK+VAELIKGRILVGHAL NDLKALLL+HPKKD+RD
Sbjct: 121 VDFRTQISGIRPRDLKKAKDFRAVQKKVAELIKGRILVGHALHNDLKALLLTHPKKDLRD 180

Query: 181 TSEYQFFQRGGCRRALRHLAAEVLGVEIQNGEHCPVEDARSAMLLYQKKSKEWEK 236
           TSEYQ F + G R+ALRHLAAEVLGVEIQNGEHCP++DAR+AMLLY+K  KEWEK
Sbjct: 181 TSEYQPFLKEGRRKALRHLAAEVLGVEIQNGEHCPIDDARAAMLLYKKNRKEWEK 234

[Close]

BLAST of Carg17072 vs. TrEMBL
Match: tr|A0A1J7GWB5|A0A1J7GWB5_LUPAN (Uncharacterized protein OS=Lupinus angustifolius OX=3871 GN=TanjilG_25164 PE=4 SV=1)

HSP 1 Score: 333.6 bits (854), Expect = 4.1e-88
Identity = 167/234 (71.37%), Postives = 193/234 (82.48%), Query Frame = 0


Query: 5   LKKRAKPKLLNPNWALLQQKLN---PHGSRRSSSVPKSEASSKTLLGKRKDRSDEESDHS 64
           +KK+ KP  +NPNW  LQQKL    P    R+    + + +SK++LGKRKDRSD+ESD S
Sbjct: 6   IKKKPKPTQMNPNWVQLQQKLKLNAPKPYSRNFKKSEEDDTSKSILGKRKDRSDDESDDS 65

Query: 65  NKKLLIPVNDDFSLTDVVAMDCEMVGVGQGNKSALGRVTVVNKWGNVIYDEFVRPIERVV 124
               L P NDD SLTD VAMDCEMVGVG+GNKSALGRVT++NKWGNVIYDEFVRP+ERVV
Sbjct: 66  EINPLAPTNDDSSLTDAVAMDCEMVGVGEGNKSALGRVTLINKWGNVIYDEFVRPLERVV 125

Query: 125 DFRTEISGIRPCDLRKAKDFPTVQKRVAELIKGRILVGHALRNDLKALLLSHPKKDVRDT 184
           DFRT +SGIRP DLRKAKD  + QK+VAELIKGRILVGHAL NDLKALLLSHPKKD+RDT
Sbjct: 126 DFRTFVSGIRPRDLRKAKDLWSAQKKVAELIKGRILVGHALHNDLKALLLSHPKKDIRDT 185

Query: 185 SEYQFFQRGGCRRALRHLAAEVLGVEIQNGEHCPVEDARSAMLLYQKKSKEWEK 236
           SEYQ FQ+ G RRAL+HLA EVLG +IQ+GEHCP+EDAR+AM+LYQ+  KEWEK
Sbjct: 186 SEYQPFQKTGSRRALKHLAEEVLGAKIQSGEHCPIEDARAAMMLYQRNRKEWEK 239

The following BLAST results are available for this feature:

BLAST of Carg17072 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022935723.1	1.4e-127	99.24	RNA exonuclease 4 [Cucurbita moschata]	[more]
XP_023535411.1	5.2e-127	98.86	RNA exonuclease 4 [Cucurbita pepo subsp. pepo]	[more]
XP_022976561.1	2.2e-125	97.72	RNA exonuclease 4 [Cucurbita maxima]	[more]
XP_004146040.1	5.0e-114	88.51	PREDICTED: RNA exonuclease 4 [Cucumis sativus] >KGN55095.1 hypothetical protein ...	[more]
XP_008463709.1	1.9e-113	88.19	PREDICTED: RNA exonuclease 4 [Cucumis melo] >ADN33800.1 RNA exonuclease [Cucumis...	[more]

BLAST of Carg17072 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G15080.1	7.5e-88	67.49	Polynucleotidyl transferase, ribonuclease H-like superfamily protein	[more]
AT3G27970.1	2.3e-20	34.13	Exonuclease family protein	[more]
AT5G40310.1	2.0e-19	34.13	Exonuclease family protein	[more]
AT2G48100.1	5.7e-19	35.63	Exonuclease family protein	[more]
AT3G50100.1	3.1e-17	39.74	small RNA degrading nuclease 1	[more]

BLAST of Carg17072 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q91560\|REXO4_XENLA	9.9e-45	50.57	RNA exonuclease 4 OS=Xenopus laevis OX=8355 GN=rexo4 PE=2 SV=2	[more]
sp\|Q9GZR2\|REXO4_HUMAN	4.9e-44	52.15	RNA exonuclease 4 OS=Homo sapiens OX=9606 GN=REXO4 PE=1 SV=2	[more]
sp\|Q6PAQ4\|REXO4_MOUSE	1.9e-43	50.00	RNA exonuclease 4 OS=Mus musculus OX=10090 GN=Rexo4 PE=2 SV=2	[more]
sp\|Q6DEW6\|REXO4_XENTR	2.4e-43	48.90	RNA exonuclease 4 OS=Xenopus tropicalis OX=8364 GN=rexo4 PE=2 SV=1	[more]
sp\|Q08237\|REXO4_YEAST	6.6e-41	52.17	RNA exonuclease 4 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=55...	[more]

BLAST of Carg17072 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0KZK3\|A0A0A0KZK3_CUCSA	3.3e-114	88.51	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G628920 PE=4 SV=1	[more]
tr\|A0A1S3CJW0\|A0A1S3CJW0_CUCME	1.3e-113	88.19	RNA exonuclease 4 OS=Cucumis melo OX=3656 GN=LOC103501792 PE=4 SV=1	[more]
tr\|E5GBF8\|E5GBF8_CUCME	1.3e-113	88.19	RNA exonuclease OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1	[more]
tr\|A0A061F8X0\|A0A061F8X0_THECC	2.2e-89	73.62	Polynucleotidyl transferase, ribonuclease H-like superfamily protein isoform 1 O...	[more]
tr\|A0A1J7GWB5\|A0A1J7GWB5_LUPAN	4.1e-88	71.37	Uncharacterized protein OS=Lupinus angustifolius OX=3871 GN=TanjilG_25164 PE=4 S...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Biological Process**
Term	Definition
GO:0006364	rRNA processing

Vocabulary: **Molecular Function**
Term	Definition
GO:0008408	3'-5' exonuclease activity
GO:0003676	nucleic acid binding

Vocabulary: **INTERPRO**
Term	Definition
IPR012337	RNaseH-like_sf
IPR037431	REX4_DEDDh_dom
IPR034920	Rex3/4
IPR036397	RNaseH_sf
IPR013520	Exonuclease_RNaseT/DNA_pol3

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
biological_process	GO:0006364	rRNA processing
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008408	3'-5' exonuclease activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg17072-RA	Carg17072-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR013520	Exonuclease, RNase T/DNA polymerase III	SMART	SM00479	exoiiiendus	coord: 77..235 e-value: 1.5E-38 score: 144.1
IPR013520	Exonuclease, RNase T/DNA polymerase III	PFAM	PF00929	RNase_T	coord: 79..226 e-value: 1.4E-13 score: 51.6
IPR036397	Ribonuclease H superfamily	GENE3D	G3DSA:3.30.420.10		coord: 74..253 e-value: 4.6E-58 score: 197.7
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 244..263
None	No IPR available	PANTHER	PTHR12801	EXONUCLEASE	coord: 68..249
IPR034920	RNA exonuclease 3/4	PANTHER	PTHR12801:SF45	IP20073P	coord: 68..249
IPR037431	RNA exonuclease 4, DEDDh 3'-5' exonuclease domain	CDD	cd06144	REX4_like	coord: 79..227 e-value: 4.21111E-90 score: 265.533
IPR012337	Ribonuclease H-like superfamily	SUPERFAMILY	SSF53098	Ribonuclease H-like	coord: 78..232

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg17072	Cla023351	Watermelon (97103) v1	carwmB0160
Carg17072	Csa4G628920	Cucumber (Chinese Long) v2	carcuB0187
Carg17072	MELO3C025620	Melon (DHL92) v3.5.1	carmeB0173
Carg17072	ClCG11G017730	Watermelon (Charleston Gray)	carwcgB0161
Carg17072	CSPI04G23130	Wild cucumber (PI 183967)	carcpiB0194
Carg17072	Cucsa.122820	Cucumber (Gy14) v1	carcgyB0208
Carg17072	CmaCh09G008350	Cucurbita maxima (Rimu)	carcmaB0224
Carg17072	CmoCh09G008300	Cucurbita moschata (Rifu)	carcmoB0235
Carg17072	Lsi04G020390	Bottle gourd (USVL1VR-Ls)	carlsiB151
Carg17072	Cp4.1LG06g06650	Cucurbita pepo (Zucchini)	carcpeB0245
Carg17072	MELO3C025620.2	Melon (DHL92) v3.6.1	carmedB0176
Carg17072	Cla97C11G223760	Watermelon (97103) v2	carwmbB0175
Carg17072	Bhi09G002842	Wax gourd	carwgoB0219

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Carg17072	Melon (DHL92) v3.5.1	carmeB0172
Carg17072	Melon (DHL92) v3.6.1	carmedB0175
Carg17072	Watermelon (Charleston Gray)	carwcgB0162
Carg17072	Watermelon (97103) v1	carwmB0161
Carg17072	Watermelon (97103) v2	carwmbB0176
Carg17072	Wax gourd	carwgoB0220
Carg17072	Silver-seed gourd	carcarB204
Carg17072	Cucumber (Gy14) v2	carcgybB0182
Carg17072	Cucurbita maxima (Rimu)	carcmaB0227
Carg17072	Cucurbita moschata (Rifu)	carcmoB0237
Carg17072	Cucurbita pepo (Zucchini)	carcpeB0242
Carg17072	Cucumber (Chinese Long) v3	carcucB0194
Carg17072	Bottle gourd (USVL1VR-Ls)	carlsiB150
Carg17072	Bottle gourd (USVL1VR-Ls)	carlsiB152