CSPI04G23130 (gene) Wild cucumber (PI 183967) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CSPI04G23130
Type	gene
Organism	Cucumis sativus (Wild cucumber (PI 183967))
Description	RNA exonuclease 4
Location	Chr4 : 21300694 .. 21304068 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GCCCTCCTTCCTTTGCCTTCGTTTCCGGTTTAGGGCCACCGGGAGAGAAGACGACCGAAGCGGCGTCTCGGCCATCAAAGTGGGAGTTTCAACATTATGAAATCTCAGCTCAAGAAGAACCCTAAACCCAAATTACTCAACCCCAATTGGGCACTACTCCAACAAGTACTTCTTCTTCTTCTTCTTCCCTTCGTTCCTTGTTTTCCCATCTCTTTCCATCACTGATTTCTATCTATTTTGATCCTGCAGAAGCTGAACCCCCATGGTTCAAATCATTCGAATACTGTCCTGAAATCCGAAGCTTCATCGAAGACCCTTTTAGGTAAGAGTTCTTCTTCTACCCCTCGGTTCAAAGTGGCTTCCCGTTTACAGAGCATTATGAACTTCCATGCTCTTGTTCGACGAAGTTTGTCGATCCTATTTTCTTTACTTCTATGTGATTGTATGAGCTTCACTAGTTCAAGCAAATAAATTGAGAAGTGGGTTTTGCTGCAATCGTCGCTTGAGATAGTGTGCTTTTGATTTTAGGAACTTGGGTTTTCTTATTATTTTATTTGGAAGTTCGTTGTTCATGAAATAGTTTGAATAACCAAACAAGTTCTTTTTTTGGTTACATTCTGACGAATCCACGTAGCTTTTGTTGTCATAATGTAGTGATTTAGTTAACTAGTGCGACGTGAGTTTACAGGGAAACGCAAGGAAAGATCTGATGTGGAGTCGAATCATTCCCAAAAGAATATTCTCATTCCGGTGAATGATGACTTTAGGTAATCTTTTAGAATTATTTTTTATTACTTGAAGAACGTTGTACATTGTTGTCCACTTACTTTAGATGCAAATTGAAAATATTTCTAATTGTATTACTTAATCACCGACGACTGGAGAGGTATTGATATATGCTTAATGATAATTCAATCCTCGATTATCATAAGTAGCAAGTTCATGTGACTAAATTATGCTATAAAATTATGATTGCACTTGGAATTAGACATATCAAGTTCTTTGTACGGCTTCTAATCCTGTAGTATTGGCAAATGGCAAATTGTGAAATACAATGTTGTACTACAACTTTAAGTTCTTCGCTTCTCCAAAAAAAAATAAAAACCAAGAAGAAGAGTGAGAGAAAGAGAAAAGCTCAAAGTTACTTGATTACTGCTTTTGTAATCTTTGGCAAAAATTGAATTTTATATGCAGTTTGAAGATAGTACTGACTTTATACTTTTGCCAGTCTTACAGATGAAGTAGCTATGGATTGTGAAATGGTTGGCGTGGGTCAAGGTAACAAAAGTGCCCTTGGACGAGTTACACTGGTATTAATTCCTTTTTTAATTTGACCACCTGTTATTTGTGTCCATGTACTTGGTTTTTTTGCATGCACATAGAGAGAGAGCCTTTTTGCACCTCCTTCAATCAATAAAGAGGATGGGTTATTATTGTTGTTAATTTTTTTTGGAGGGGTTGATAGTTCAACTTGCATTCTCATAAGTAGCGGCTTCTTAGAGCAACAAAGCATGAAGTTGAACTTTTCTATATTATTAGTTGCTAACAGAACTGCCAATTAATGGCAGGTAAACAAATGGGGGAATGTTATATACGATGAGTTTGTACGCCCGATAGAGCGTGTGGTTGACTTTCGGACCCAAATTAGTGGCATAAGACCCTGCGACTTGAAGAAAGGTCTCATTTGCTTTCCTTCTTTCTTTTAATATGTATATTTTGTTGTTTACTCTGCTGTTTCCTTAAAAAGTTTTAACAATGTTGAAGACTCTAATTTCTAGTTATGTGATTATACCATTGTATCTGTTAGAAAATTAATGCTTTGCACTAATATACAAGTGGAATTTTGAGTAGGTTGATTAATTATGGTCTGGGATTTGAATTTTAAAGGTTTCTTGCTCCCAATGAGTCTTTCATCCTCCGATTTCCAGTTAGGATTTATATTCGTTACGTTAATTTAGGTTTCATAAATGTCATTAACTTATTGATTTAATTTTTTAAATTTCAGCTAAGGATTTTCCAACTGTCCAGAAGAGAGTTGCAGAGTTGATTAAAGGAAAGCTTCTTGTTGGCCATGCCTTGCGTAATGATCTCAAGGTATTTAGATTAAAATGGTTTGAAGTATAAACCTGAAAAGTTATATTAAAGTTCTCTATTGATTTGACAGGCATTACTCTTGAGTCATCCCAAGAATGATGTGAGAGACACCTCCGAGTACCAATTCTTTCAGAAGTAATAATTTGCTCCCCATTGTAATTTATAACTTCTACCTTTTAATTTCTACTTCGAAATTCATATATTCTCAAATGTTTGATGAAACAGGGAAGGATGTAAAAGAGCTCTCCGCCATCTTGCAGCCGAGTTTCTTAGTGTTGAGATCCAAAATGGGGAGCACTGTCCTGTAAGTTCTCTGATCTTTTCGTCTTTTATATTTCTAGTCTCTTTTGTTAAACTGGAGAGAAATCGGGGTATTGATCATATAACCACTTGGGTTGACCTAATGGTCAATAAGGGTCATGAAAATAATAAAGGGACCTAAATATAGTGGGTTCAAGCCACTTCTAATTTTATATTCTATGTGAATAACCTAATATTATAGAGTTGAGAGTTCAACACTTATCTCTCGAGAGACTGACATAAACTTGAAAATGTAAGGATTAAACTTGTAATTTAACCAAAAAAATTATGCTACCCCTGATATTTTATGGTAGTTACAACTTACAAGGGTCCCACTTAACCTCCATGTTACAACTTCCAAGAGTCCTACTTTACTTTACAACCATGTTACTTGGATTCATCCTAAGATCCATGATCTCCCATCTTAGTGGAAATTAAGTACCATATCTGGACCTCAATTTGCAAATTCTGGAATCCATATATTATATCATTCTGGCTTCCTCTATCACTATCTATGCCAACAGCTTGCAATGAATTTATCCATCTGGTTTCTAATATTATTGATATGTTTTCATGGGACATTTTGTTTTGATAAATTTGTGAAATTTGGATGTAACTTTCTTTTGTAGGTAGAAGATGCTCGTTCTGCAATGCTGCTCTATCAGAAGAAAAGAAAAGAGTGGGAAAAGAGTGTTAAAGCTGAACAAAAGCTTAAATTGAAGCAGAAAAAACGCAAGCCAAGGAAGAAATCCAAGGATGGAGGATGTTTTGAATGATCAATCAGACTCCTAATATCTTAATCCGACTTGGATCTTACAAAAATGTGTAACATGTTGATATAGAACTTAGAATGAGTATTTATTACAGGCATTTGAAGGCATGAGTTCCATTCTTTATTATGAGTGAAGCTATTGGTCTGTGTTCTTGGCCAAAATTTTGATCTTCAGGCTCGAAAAGAATTACTGGTTATTGATGTTGAAG

mRNA sequence

ATGAAATCTCAGCTCAAGAAGAACCCTAAACCCAAATTACTCAACCCCAATTGGGCACTACTCCAACAAAAGCTGAACCCCCATGGTTCAAATCATTCGAATACTGTCCTGAAATCCGAAGCTTCATCGAAGACCCTTTTAGGGAAACGCAAGGAAAGATCTGATGTGGAGTCGAATCATTCCCAAAAGAATATTCTCATTCCGGTGAATGATGACTTTAGTCTTACAGATGAAGTAGCTATGGATTGTGAAATGGTTGGCGTGGGTCAAGGTAACAAAAGTGCCCTTGGACGAGTTACACTGGTAAACAAATGGGGGAATGTTATATACGATGAGTTTGTACGCCCGATAGAGCGTGTGGTTGACTTTCGGACCCAAATTAGTGGCATAAGACCCTGCGACTTGAAGAAAGCTAAGGATTTTCCAACTGTCCAGAAGAGAGTTGCAGAGTTGATTAAAGGAAAGCTTCTTGTTGGCCATGCCTTGCGTAATGATCTCAAGGCATTACTCTTGAGTCATCCCAAGAATGATGTGAGAGACACCTCCGAGTACCAATTCTTTCAGAAGGAAGGATGTAAAAGAGCTCTCCGCCATCTTGCAGCCGAGTTTCTTAGTGTTGAGATCCAAAATGGGGAGCACTGTCCTGTAGAAGATGCTCGTTCTGCAATGCTGCTCTATCAGAAGAAAAGAAAAGAGTGGGAAAAGAGTGTTAAAGCTGAACAAAAGCTTAAATTGAAGCAGAAAAAACGCAAGCCAAGGAAGAAATCCAAGGATGGAGGATGTTTTGAATGA

Coding sequence (CDS)

ATGAAATCTCAGCTCAAGAAGAACCCTAAACCCAAATTACTCAACCCCAATTGGGCACTACTCCAACAAAAGCTGAACCCCCATGGTTCAAATCATTCGAATACTGTCCTGAAATCCGAAGCTTCATCGAAGACCCTTTTAGGGAAACGCAAGGAAAGATCTGATGTGGAGTCGAATCATTCCCAAAAGAATATTCTCATTCCGGTGAATGATGACTTTAGTCTTACAGATGAAGTAGCTATGGATTGTGAAATGGTTGGCGTGGGTCAAGGTAACAAAAGTGCCCTTGGACGAGTTACACTGGTAAACAAATGGGGGAATGTTATATACGATGAGTTTGTACGCCCGATAGAGCGTGTGGTTGACTTTCGGACCCAAATTAGTGGCATAAGACCCTGCGACTTGAAGAAAGCTAAGGATTTTCCAACTGTCCAGAAGAGAGTTGCAGAGTTGATTAAAGGAAAGCTTCTTGTTGGCCATGCCTTGCGTAATGATCTCAAGGCATTACTCTTGAGTCATCCCAAGAATGATGTGAGAGACACCTCCGAGTACCAATTCTTTCAGAAGGAAGGATGTAAAAGAGCTCTCCGCCATCTTGCAGCCGAGTTTCTTAGTGTTGAGATCCAAAATGGGGAGCACTGTCCTGTAGAAGATGCTCGTTCTGCAATGCTGCTCTATCAGAAGAAAAGAAAAGAGTGGGAAAAGAGTGTTAAAGCTGAACAAAAGCTTAAATTGAAGCAGAAAAAACGCAAGCCAAGGAAGAAATCCAAGGATGGAGGATGTTTTGAATGA

Homology

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BLAST of CSPI04G23130 vs. Swiss-Prot
Match: REXO4_XENLA (RNA exonuclease 4 OS=Xenopus laevis GN=rexo4 PE=2 SV=2)

HSP 1 Score: 174.5 bits (441), Expect = 1.6e-42
Identity = 89/185 (48.11%), Postives = 133/185 (71.89%), Query Frame = 1


Query: 75  LTDEVAMDCEMVGVGQ-GNKSALGRVTLVNKWGNVIYDEFVRPIERVVDFRTQISGIRPC 134
           LT  VAMDCEMVGVG  G +S L RV++VN +G  +YD++V+P ERV D+RT +SGIRP 
Sbjct: 231 LTRTVAMDCEMVGVGMDGEESILARVSIVNLFGKCVYDKYVKPTERVTDYRTAVSGIRPE 290

Query: 135 DLKKAKDFPTVQKRVAELIKGKLLVGHALRNDLKALLLSHPKNDVRDTSEYQFFQK--EG 194
           D+KK + F  VQK V+E+++G+ LVGHA+ NDLK L L HPK  +RDT +Y+ F++  + 
Sbjct: 291 DVKKGEPFKVVQKEVSEILRGRTLVGHAVHNDLKILFLDHPKKAIRDTQKYKPFKQKVKS 350

Query: 195 CKRALRHLAAEFLSVEIQNGEHCPVEDARSAMLLYQKKRKEWEKSVKAEQK--LKLKQKK 254
            + +L+ L  + L+V++Q GEHC V+DA++AM LY  ++K WE ++KA+    + + +K 
Sbjct: 351 GRPSLKLLCEKILNVKVQTGEHCSVQDAQAAMRLYTMEKKSWEVAIKAKYTGVMPVDRKS 410

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BLAST of CSPI04G23130 vs. Swiss-Prot
Match: REXO4_XENTR (RNA exonuclease 4 OS=Xenopus tropicalis GN=rexo4 PE=2 SV=1)

HSP 1 Score: 171.8 bits (434), Expect = 1.0e-41
Identity = 89/183 (48.63%), Postives = 128/183 (69.95%), Query Frame = 1


Query: 75  LTDEVAMDCEMVGVG-QGNKSALGRVTLVNKWGNVIYDEFVRPIERVVDFRTQISGIRPC 134
           LT  VAMDCEMVGVG  G +S L RV++VN +G  +YD++VRP ERV D+RT +SGIRP 
Sbjct: 225 LTRTVAMDCEMVGVGLDGEESMLARVSIVNLFGKCVYDKYVRPTERVTDYRTAVSGIRPD 284

Query: 135 DLKKAKDFPTVQKRVAELIKGKLLVGHALRNDLKALLLSHPKNDVRDTSEYQFFQK--EG 194
           D+K  + F  VQ  VAE+++G+ LVGHA+ NDLK L L HPK  +RDT +Y+ F++  + 
Sbjct: 285 DIKNGEAFKDVQAEVAEILRGRTLVGHAVHNDLKILFLDHPKKAIRDTQKYKPFKEKVKS 344

Query: 195 CKRALRHLAAEFLSVEIQNGEHCPVEDARSAMLLYQKKRKEWEKSVKAEQKLKLKQKKRK 254
            + +L+ L  + L+V++Q GEHC V+DA++AM LY  ++K WE ++KA+       K + 
Sbjct: 345 GRPSLKLLCEKILNVKVQTGEHCSVQDAQAAMRLYTMEKKCWEAAIKAKYAGVTAAKAKG 404

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BLAST of CSPI04G23130 vs. Swiss-Prot
Match: REXO4_HUMAN (RNA exonuclease 4 OS=Homo sapiens GN=REXO4 PE=1 SV=2)

HSP 1 Score: 169.9 bits (429), Expect = 3.8e-41
Identity = 82/172 (47.67%), Postives = 122/172 (70.93%), Query Frame = 1


Query: 75  LTDEVAMDCEMVGVG-QGNKSALGRVTLVNKWGNVIYDEFVRPIERVVDFRTQISGIRPC 134
           LT  +A+DCEMVGVG +G +S   RV++VN++G  +YD++V+P E V D+RT +SGIRP 
Sbjct: 240 LTRALALDCEMVGVGPKGEESMAARVSIVNQYGKCVYDKYVKPTEPVTDYRTAVSGIRPE 299

Query: 135 DLKKAKDFPTVQKRVAELIKGKLLVGHALRNDLKALLLSHPKNDVRDTSEYQFF--QKEG 194
           +LK+ ++   VQK VAE++KG++LVGHAL NDLK L L HPK  +RDT +Y+ F  Q + 
Sbjct: 300 NLKQGEELEVVQKEVAEMLKGRILVGHALHNDLKVLFLDHPKKKIRDTQKYKPFKSQVKS 359

Query: 195 CKRALRHLAAEFLSVEIQNGEHCPVEDARSAMLLYQKKRKEWEKSVKAEQKL 244
            + +LR L+ + L +++Q  EHC ++DA++AM LY   +KEWE   +  + L
Sbjct: 360 GRPSLRLLSEKILGLQVQQAEHCSIQDAQAAMRLYVMVKKEWESMARDRRPL 411

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BLAST of CSPI04G23130 vs. Swiss-Prot
Match: REXO4_MOUSE (RNA exonuclease 4 OS=Mus musculus GN=Rexo4 PE=2 SV=2)

HSP 1 Score: 169.1 bits (427), Expect = 6.5e-41
Identity = 78/165 (47.27%), Postives = 120/165 (72.73%), Query Frame = 1


Query: 75  LTDEVAMDCEMVGVG-QGNKSALGRVTLVNKWGNVIYDEFVRPIERVVDFRTQISGIRPC 134
           LT  +A+DCEMVGVG +G +S   RV++VN++G  +YD++V+P E V D+RT +SGIRP 
Sbjct: 250 LTKALALDCEMVGVGPKGEESIAARVSIVNQYGKCVYDKYVKPTEPVTDYRTAVSGIRPE 309

Query: 135 DLKKAKDFPTVQKRVAELIKGKLLVGHALRNDLKALLLSHPKNDVRDTSEYQFFQK--EG 194
           +LK+ ++F  V+K VAE++KG++LVGHAL NDLK L L HPK  +RDT +++ F+   + 
Sbjct: 310 NLKQGEEFEVVKKEVAEMLKGRILVGHALHNDLKVLFLDHPKKKIRDTQKFKPFRSRVKS 369

Query: 195 CKRALRHLAAEFLSVEIQNGEHCPVEDARSAMLLYQKKRKEWEKS 237
            + +L+ L+ + L + +Q  EHC ++DA++AM LY   ++EWE S
Sbjct: 370 GRPSLKRLSEKILGIRVQQAEHCSIQDAQAAMRLYVMVKREWESS 414

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BLAST of CSPI04G23130 vs. Swiss-Prot
Match: REXO4_YEAST (RNA exonuclease 4 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=REX4 PE=1 SV=1)

HSP 1 Score: 162.5 bits (410), Expect = 6.1e-39
Identity = 97/239 (40.59%), Postives = 152/239 (63.60%), Query Frame = 1


Query: 1   MKSQLKKNPKPKLLNPNWALLQQKLNPHGSNHSNTVLKSEASSKTLLGKRKERSDVESNH 60
           M  ++ K+ K KL    +     + NP+ +N S T+ +      +      E + + SN 
Sbjct: 66  MNKEISKHEKDKLEGKVF-----EFNPNKANTSTTIKEPVKVGIS------EDTRINSNK 125

Query: 61  SQKNILIPVNDDFSLTDEVAMDCEMVGVG-QGNKSALGRVTLVNKWGNVIYDEFVRPIER 120
           S++           +   +AMDCE VGVG +G +SAL R+++VN +G+V+ DEFV+P E+
Sbjct: 126 SKE-----------IGKYIAMDCEFVGVGPEGKESALARISIVNYFGHVVLDEFVKPREK 185

Query: 121 VVDFRTQISGIRPCDLKKAKDFPTVQKRVAELIKGKLLVGHALRNDLKALLLSHPKNDVR 180
           VV++RT +SGI+P  +K A  F   QK+ A++++G++LVGHAL++DL+AL+LSHPK+ +R
Sbjct: 186 VVEWRTWVSGIKPEHMKNAITFKEAQKKTADILEGRILVGHALKHDLEALMLSHPKSLLR 245

Query: 181 DTSEYQFFQK---EGCKRALRHLAAEFLSVEIQNGEHCPVEDARSAMLLYQKKRKEWEK 236
           DTS +  F+K   +G   +L+ L  E L + IQ GEH  VEDAR+ MLLY+K++ E+EK
Sbjct: 246 DTSRHLPFRKLYAKGKTPSLKKLTREVLKISIQEGEHSSVEDARATMLLYKKEKTEFEK 282

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BLAST of CSPI04G23130 vs. TrEMBL
Match: A0A0A0KZK3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G628920 PE=4 SV=1)

HSP 1 Score: 511.9 bits (1317), Expect = 4.6e-142
Identity = 262/263 (99.62%), Postives = 262/263 (99.62%), Query Frame = 1


Query: 1   MKSQLKKNPKPKLLNPNWALLQQKLNPHGSNHSNTVLKSEASSKTLLGKRKERSDVESNH 60
           MKSQLKKNPKPKLLNPNWALLQQKLNPHGSNHSNTVLKSEASSKTLLGKRKERSDVESNH
Sbjct: 1   MKSQLKKNPKPKLLNPNWALLQQKLNPHGSNHSNTVLKSEASSKTLLGKRKERSDVESNH 60

Query: 61  SQKNILIPVNDDFSLTDEVAMDCEMVGVGQGNKSALGRVTLVNKWGNVIYDEFVRPIERV 120
           SQKNILIPVNDDFSLTDEVAMDCEMVGVGQGNKSALGRVTLVNKWGNVIYDEFVRPIERV
Sbjct: 61  SQKNILIPVNDDFSLTDEVAMDCEMVGVGQGNKSALGRVTLVNKWGNVIYDEFVRPIERV 120

Query: 121 VDFRTQISGIRPCDLKKAKDFPTVQKRVAELIKGKLLVGHALRNDLKALLLSHPKNDVRD 180
           VDFRTQISGIRPCDLKKAKDFPTVQKRVAELIKGKLLVGHALRNDLKALLLSHPKNDVRD
Sbjct: 121 VDFRTQISGIRPCDLKKAKDFPTVQKRVAELIKGKLLVGHALRNDLKALLLSHPKNDVRD 180

Query: 181 TSEYQFFQKEGCKRALRHLAAEFLSVEIQNGEHCPVEDARSAMLLYQKKRKEWEKSVKAE 240
           TSEYQFFQKEGCKRALRHLAAEFLSVEIQNGEHCPVEDARSAMLLYQKKRKEWEKSVKAE
Sbjct: 181 TSEYQFFQKEGCKRALRHLAAEFLSVEIQNGEHCPVEDARSAMLLYQKKRKEWEKSVKAE 240

Query: 241 QKLKLKQKKRKPRKKSKDGGCFE 264
           QKLKLKQKKRKPRKKSKDGG FE
Sbjct: 241 QKLKLKQKKRKPRKKSKDGGGFE 263

[Close]

BLAST of CSPI04G23130 vs. TrEMBL
Match: E5GBF8_CUCME (RNA exonuclease OS=Cucumis melo subsp. melo PE=4 SV=1)

HSP 1 Score: 493.4 bits (1269), Expect = 1.7e-136
Identity = 254/265 (95.85%), Postives = 258/265 (97.36%), Query Frame = 1


Query: 1   MKSQLKKNPKPKLLNPNWALLQQKLNPHGSNHS--NTVLKSEASSKTLLGKRKERSDVES 60
           M SQLKKNPKPKLLNPNWA+LQQKL PHGSNHS  +TV KSEASSKTLLGKRKERSDVES
Sbjct: 1   MTSQLKKNPKPKLLNPNWAILQQKLKPHGSNHSKASTVPKSEASSKTLLGKRKERSDVES 60

Query: 61  NHSQKNILIPVNDDFSLTDEVAMDCEMVGVGQGNKSALGRVTLVNKWGNVIYDEFVRPIE 120
           NHSQKNILIPVNDDFSLTDEVAMDCEMVGVGQGNKSALGRVTLVNKWGNVIYDEFVRPIE
Sbjct: 61  NHSQKNILIPVNDDFSLTDEVAMDCEMVGVGQGNKSALGRVTLVNKWGNVIYDEFVRPIE 120

Query: 121 RVVDFRTQISGIRPCDLKKAKDFPTVQKRVAELIKGKLLVGHALRNDLKALLLSHPKNDV 180
           RVVDFRTQISGIRPCDLKKAKDFPTVQKRVAELIKGK+LVGHALRNDLKALLLSHPKNDV
Sbjct: 121 RVVDFRTQISGIRPCDLKKAKDFPTVQKRVAELIKGKILVGHALRNDLKALLLSHPKNDV 180

Query: 181 RDTSEYQFFQKEGCKRALRHLAAEFLSVEIQNGEHCPVEDARSAMLLYQKKRKEWEKSVK 240
           RDTSEYQFFQKEGCKRALRHLAAEFL V+IQNGEHCPVEDARSAMLLYQKKRKEWEKSVK
Sbjct: 181 RDTSEYQFFQKEGCKRALRHLAAEFLGVQIQNGEHCPVEDARSAMLLYQKKRKEWEKSVK 240

Query: 241 AEQKLKLKQKKRKPRKKSKDGGCFE 264
           AEQKLKLKQKKRKPRKKSKDGG FE
Sbjct: 241 AEQKLKLKQKKRKPRKKSKDGGGFE 265

[Close]

BLAST of CSPI04G23130 vs. TrEMBL
Match: A0A061F8X0_THECC (Polynucleotidyl transferase, ribonuclease H-like superfamily protein isoform 1 OS=Theobroma cacao GN=TCM_031662 PE=4 SV=1)

HSP 1 Score: 351.3 bits (900), Expect = 1.0e-93
Identity = 188/257 (73.15%), Postives = 214/257 (83.27%), Query Frame = 1


Query: 1   MKSQLKKNPKPKLLNPNWALLQQKLNPHGSNHSNTVLKSEASSKTLLGKRKERSDVESNH 60
           M S +KKNPK   LNPNWA LQQKL    ++    + +SE  + ++LGKRKER   ES+ 
Sbjct: 1   MGSDVKKNPKQFQLNPNWAQLQQKLKSAETSRHPKIPQSETPN-SILGKRKERPTPESDD 60

Query: 61  SQKNILIPVNDDFSLTDEVAMDCEMVGVGQGNKSALGRVTLVNKWGNVIYDEFVRPIERV 120
           ++ N LIP NDD SLTD +AMDCEMVGVGQGNKSALGRV+LVNKWGNVIYDEFVRPIERV
Sbjct: 61  AKPNPLIPTNDDSSLTDVLAMDCEMVGVGQGNKSALGRVSLVNKWGNVIYDEFVRPIERV 120

Query: 121 VDFRTQISGIRPCDLKKAKDFPTVQKRVAELIKGKLLVGHALRNDLKALLLSHPKNDVRD 180
           VDFRTQISGIRP DLKKAKDF  VQK+VAELIKG++LVGHAL NDLKALLL+HPK D+RD
Sbjct: 121 VDFRTQISGIRPRDLKKAKDFRAVQKKVAELIKGRILVGHALHNDLKALLLTHPKKDLRD 180

Query: 181 TSEYQFFQKEGCKRALRHLAAEFLSVEIQNGEHCPVEDARSAMLLYQKKRKEWEKSVKAE 240
           TSEYQ F KEG ++ALRHLAAE L VEIQNGEHCP++DAR+AMLLY+K RKEWEKSVK +
Sbjct: 181 TSEYQPFLKEGRRKALRHLAAEVLGVEIQNGEHCPIDDARAAMLLYKKNRKEWEKSVKDQ 240

Query: 241 QKLKLKQKKRKPRKKSK 258
            +LK KQKKRK RKK K
Sbjct: 241 IRLKEKQKKRKHRKKPK 256

[Close]

BLAST of CSPI04G23130 vs. TrEMBL
Match: A0A067KWR7_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_09824 PE=4 SV=1)

HSP 1 Score: 347.8 bits (891), Expect = 1.1e-92
Identity = 186/265 (70.19%), Postives = 217/265 (81.89%), Query Frame = 1


Query: 6   KKNPKPKL---LNPNWALLQQKLNPHGSNHSNTVLKSEASSKT---LLGKRKERSDVESN 65
           KKNPK +    LNPNWA LQQKLN  GS HS     +++SS+T   +LGKRKER    S+
Sbjct: 8   KKNPKQQKQLPLNPNWAQLQQKLNSSGSRHSRP--SNDSSSETQISVLGKRKERPSSVSD 67

Query: 66  HSQKNILIPVNDDFSLTDEVAMDCEMVGVGQGNKSALGRVTLVNKWGNVIYDEFVRPIER 125
            S  N L P NDD SLTD +AMDCEMVG+GQGNKSALGRVTLVN+WGNVIYDEFVRPIER
Sbjct: 68  ESLPNPLAPTNDDSSLTDVIAMDCEMVGIGQGNKSALGRVTLVNQWGNVIYDEFVRPIER 127

Query: 126 VVDFRTQISGIRPCDLKKAKDFPTVQKRVAELIKGKLLVGHALRNDLKALLLSHPKNDVR 185
           VVDFRT+ISGIRP  L+KAKDFPTVQK+VAELIKG++LVGHAL NDLKALLL+HPK D+R
Sbjct: 128 VVDFRTRISGIRPQHLRKAKDFPTVQKKVAELIKGRVLVGHALSNDLKALLLTHPKKDLR 187

Query: 186 DTSEYQ-FFQKEGCKRALRHLAAEFLSVEIQNGEHCPVEDARSAMLLYQKKRKEWEKSVK 245
           DTSEYQ F  +E  ++ALRHLAAEFL  +IQNGEHC +EDAR+AMLLYQK RKEWEK++K
Sbjct: 188 DTSEYQPFLNRERRRKALRHLAAEFLGAKIQNGEHCSIEDARAAMLLYQKNRKEWEKNMK 247

Query: 246 AEQKLKLKQKKRKPRKKSKDGGCFE 264
            +++LKLKQKKRK +KK K+G   +
Sbjct: 248 DQRRLKLKQKKRKKKKKQKEGDALQ 270

[Close]

BLAST of CSPI04G23130 vs. TrEMBL
Match: A0A059BUT1_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_F03289 PE=4 SV=1)

HSP 1 Score: 347.1 bits (889), Expect = 2.0e-92
Identity = 176/260 (67.69%), Postives = 210/260 (80.77%), Query Frame = 1


Query: 5   LKKNPKPKLLNPNWALLQQKLNPHGSNH-SNTVLKSEASSKTLLGKRKERSDVESNHSQK 64
           +K++   + LNPNWA LQQKL  HGS    ++ L     SK++LGKRKER+D E +    
Sbjct: 50  MKQHKNSQQLNPNWAQLQQKLKSHGSRPPKSSELSDSGPSKSVLGKRKERADAEPDDRCP 109

Query: 65  NILIPVNDDFSLTDEVAMDCEMVGVGQGNKSALGRVTLVNKWGNVIYDEFVRPIERVVDF 124
           + L+P N DF LTD +AMDCEMVGV QGNKSALGRVTLVNKWGNV+YDEFVRPI+RVVD+
Sbjct: 110 DPLMPANSDFGLTDAIAMDCEMVGVAQGNKSALGRVTLVNKWGNVLYDEFVRPIDRVVDY 169

Query: 125 RTQISGIRPCDLKKAKDFPTVQKRVAELIKGKLLVGHALRNDLKALLLSHPKNDVRDTSE 184
           RTQ+SGIRP D++KAKDF TVQK+VAELIKG++LVGHAL NDLKALLL+HPK D+RDTSE
Sbjct: 170 RTQVSGIRPSDMRKAKDFCTVQKKVAELIKGRVLVGHALHNDLKALLLTHPKKDIRDTSE 229

Query: 185 YQFFQKEGCKRALRHLAAEFLSVEIQNGEHCPVEDARSAMLLYQKKRKEWEKSVKAEQKL 244
           Y  FQKEGC++ALRHLAAE L   IQNGEHCPVEDAR+AMLLY + +K+WEKSVK + + 
Sbjct: 230 YLPFQKEGCRKALRHLAAELLGASIQNGEHCPVEDARAAMLLYIRNKKKWEKSVKDQIRF 289

Query: 245 KLKQKKRKPRKKSKDGGCFE 264
           K KQKKRKP+KK  D G  +
Sbjct: 290 KQKQKKRKPKKKPVDNGALK 309

[Close]

BLAST of CSPI04G23130 vs. TAIR10
Match: AT3G15080.1 (AT3G15080.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein)

HSP 1 Score: 331.6 bits (849), Expect = 4.3e-91
Identity = 176/266 (66.17%), Postives = 208/266 (78.20%), Query Frame = 1


Query: 1   MKSQLKKNPKPKL------LNPNWALLQQKLNPHGSNHSNTVLKSEASS-KTLLGKRKER 60
           M S LK+ PK K+      LNPNW+LLQQKL     +H NT   S   +  ++LGKRKER
Sbjct: 1   MSSDLKRKPKKKITPKPVQLNPNWSLLQQKLK--SDSHGNTRKSSNPENPSSILGKRKER 60

Query: 61  SDVESNHSQKNILIPVNDDFSLTDEVAMDCEMVGVGQGNKSALGRVTLVNKWGNVIYDEF 120
            D E +  + N L PVNDD SLTDEVAMDCEMVGV QG KSALGRVTLVNKWGNV+YDEF
Sbjct: 61  PDSEVDVPKINPLAPVNDDSSLTDEVAMDCEMVGVSQGTKSALGRVTLVNKWGNVLYDEF 120

Query: 121 VRPIERVVDFRTQISGIRPCDLKKAKDFPTVQKRVAELIKGKLLVGHALRNDLKALLLSH 180
           VRP+E VVDFRT ISGIRP DL+KAKDF   Q +VAELIKGK+LVGHAL NDLKALLL+H
Sbjct: 121 VRPVEHVVDFRTSISGIRPRDLRKAKDFRVAQTKVAELIKGKILVGHALHNDLKALLLTH 180

Query: 181 PKNDVRDTSEYQFFQKEGCKRALRHLAAEFLSVEIQNGEHCPVEDARSAMLLYQKKRKEW 240
           PK D+RDT EYQ F K   +++L+HLA+E L  +IQNGEHCP++DAR+AM+LYQK RKEW
Sbjct: 181 PKKDIRDTGEYQPFLKGKTRKSLKHLASEILGADIQNGEHCPIDDARAAMMLYQKNRKEW 240

Query: 241 EKSVKAEQKLKLKQKKRKPRKKSKDG 260
           EK+VK + ++ LKQKKRKP+KK+K G
Sbjct: 241 EKTVKDQTRMWLKQKKRKPKKKAKYG 264

[Close]

BLAST of CSPI04G23130 vs. TAIR10
Match: AT2G48100.1 (AT2G48100.1 Exonuclease family protein)

HSP 1 Score: 93.2 bits (230), Expect = 2.6e-19
Identity = 65/173 (37.57%), Postives = 95/173 (54.91%), Query Frame = 1


Query: 79  VAMDCEMVGVG-QGNKSALGRVTLVNKWGNVIYDEFVRPIERVVDFRTQISGIRPCDLKK 138
           +A+DCEMVG G  G       V LV+   NVI+   V+P+  V D+R +I+G+   DLK 
Sbjct: 133 MALDCEMVGGGADGTIDQCASVCLVDDDENVIFSTHVQPLLPVTDYRHEITGLTKEDLKD 192

Query: 139 AKDFPTVQKRVAELIKGK--------LLVGHALRNDLKALLLSHPKNDVRDTSEYQFFQK 198
                 V++RV   + G         LLVGH LR+D+  L L +P + +RDT++Y    K
Sbjct: 193 GMPLEHVRERVFSFLCGGQNDGAGRLLLVGHDLRHDMSCLKLEYPSHLLRDTAKYVPLMK 252

Query: 199 EGC-KRALRHLAAEFLSVEIQNGEHCPVEDARSAMLLYQKKR-KEWEKSVKAE 241
                ++L++L   +L  +IQ G+H   ED  SAM LY++ R +E   S KAE
Sbjct: 253 TNLVSQSLKYLTKSYLGYKIQCGKHEVYEDCVSAMRLYKRMRDQEHVCSGKAE 305

[Close]

BLAST of CSPI04G23130 vs. TAIR10
Match: AT5G40310.1 (AT5G40310.1 Exonuclease family protein)

HSP 1 Score: 87.8 bits (216), Expect = 1.1e-17
Identity = 53/168 (31.55%), Postives = 87/168 (51.79%), Query Frame = 1


Query: 79  VAMDCEMVGVGQ-GNKSALGRVTLVNKWGNVIYDEFVRPIERVVDFRTQISGIRPCDLKK 138
           VA+ C+MVG G  G+     RV + ++  NV++  +V+P   V ++R +++GIRP +L+ 
Sbjct: 127 VALSCKMVGGGSDGSLDLCARVCITDESENVVFHTYVKPTIPVTNYRYEMTGIRPENLRD 186

Query: 139 AKDFPTVQKRVAELI--------------KGKLLVGHALRNDLKALLLSHPKNDVRDTSE 198
           A      Q++V E +              K ++LVGH L N L +L L +  + +RDT+E
Sbjct: 187 AMRLKHAQRKVQEFLCNGEPMWKIRPRNGKARILVGHGLDNHLDSLQLEYSSSMIRDTAE 246

Query: 199 YQFFQKEG-CKRALRHLAAEFLSVEIQNGEHCPVEDARSAMLLYQKKR 231
           Y    K      +L++L   +L  +I  G   P ED  + M LY + R
Sbjct: 247 YPPLMKSSKLSNSLKYLTQAYLGYDIHVGIQDPYEDCVATMRLYTRMR 294

[Close]

BLAST of CSPI04G23130 vs. TAIR10
Match: AT3G27970.1 (AT3G27970.1 Exonuclease family protein)

HSP 1 Score: 86.7 bits (213), Expect = 2.4e-17
Identity = 65/230 (28.26%), Postives = 114/230 (49.57%), Query Frame = 1


Query: 29  GSNHSNTVLKSEASSKTLLGKRKERSDVESNHSQKNILIPVND----DFSLTDE---VAM 88
           G     T+L+S  +S+ +  +R + S V S  + +   + + D    D++ +     VA+
Sbjct: 80  GCRFCMTILESP-NSRRIHQERCQFSSVNSGLTTRMAALGLRDKAMIDYTSSRSPRVVAL 139

Query: 89  DCEMVGVGQ-GNKSALGRVTLVNKWGNVIYDEFVRPIERVVDFRTQISGIRPCDLKKAKD 148
            C+MVG G  G+     RV + ++  NVI+  +V+P   V  +R + +GIRP +L+ A  
Sbjct: 140 SCKMVGGGSDGSLDLCARVCITDESDNVIFHTYVKPSMAVTSYRYETTGIRPENLRDAMP 199

Query: 149 FPTVQKRVAELI--------------KGKLLVGHALRNDLKALLLSHPKNDVRDTSEYQF 208
              VQ+++ E +              K ++LVGH L +DL  L L +P + +RDT++Y  
Sbjct: 200 LKQVQRKIQEFLCNGEPMWKIRPRGGKARILVGHGLDHDLDRLQLEYPSSMIRDTAKYPP 259

Query: 209 FQKEG-CKRALRHLAAEFLSVEIQNGEHCPVEDARSAMLLYQKKRKEWEK 236
             K      +L++L   +L  ++  G   P ED  + M LY + R +  K
Sbjct: 260 LMKTSKLSNSLKYLTQAYLGYDVHFGIQDPYEDCVATMRLYTRMRYQKHK 308

[Close]

BLAST of CSPI04G23130 vs. TAIR10
Match: AT5G25800.1 (AT5G25800.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein)

HSP 1 Score: 78.6 bits (192), Expect = 6.6e-15
Identity = 67/192 (34.90%), Postives = 97/192 (50.52%), Query Frame = 1


Query: 45  TLLGKRKERSDVESNHSQKNILIPVNDDFSLTDEVAMDCEMVGVGQGNKSALGRVTLVNK 104
           TL  K  E++       +    +P        + VA+DCEM    +G +  L RVTLV+ 
Sbjct: 182 TLSQKEMEQNGYTFEKLELTPTLPAPSGSCPPEIVALDCEMCITKEGLE--LTRVTLVDI 241

Query: 105 WGNVIYDEFVRPIERVVDFRTQISGIRPCDLK-KAKDFPTVQKRVAELI-KGKLLVGHAL 164
            G V+ D+ V P   + D+ T+ SGI    ++        +Q+   +L+ K  +LVGH+L
Sbjct: 242 QGQVLLDKLVMPTNPITDYNTRYSGITAVMMEGVTTTLKDIQEEFLKLVFKETILVGHSL 301

Query: 165 RNDLKALLLSHPKNDVRDTSE-YQFFQKEGCKRALRHLAAEFLSVEIQNGE--HCPVEDA 224
            NDL +L +SH  N V DT+  Y+       K  LR LA +FL+ EIQ  E  H   EDA
Sbjct: 302 ENDLLSLKISH--NLVIDTAVLYKHPHGRSYKTKLRILAKKFLAREIQESESGHDSAEDA 361

Query: 225 RSAMLLYQKKRK 232
           ++AM L   K K
Sbjct: 362 KAAMDLALLKIK 369

[Close]

BLAST of CSPI04G23130 vs. NCBI nr
Match: gi|449456607|ref|XP_004146040.1| (PREDICTED: RNA exonuclease 4 [Cucumis sativus])

HSP 1 Score: 511.9 bits (1317), Expect = 6.6e-142
Identity = 262/263 (99.62%), Postives = 262/263 (99.62%), Query Frame = 1


Query: 1   MKSQLKKNPKPKLLNPNWALLQQKLNPHGSNHSNTVLKSEASSKTLLGKRKERSDVESNH 60
           MKSQLKKNPKPKLLNPNWALLQQKLNPHGSNHSNTVLKSEASSKTLLGKRKERSDVESNH
Sbjct: 1   MKSQLKKNPKPKLLNPNWALLQQKLNPHGSNHSNTVLKSEASSKTLLGKRKERSDVESNH 60

Query: 61  SQKNILIPVNDDFSLTDEVAMDCEMVGVGQGNKSALGRVTLVNKWGNVIYDEFVRPIERV 120
           SQKNILIPVNDDFSLTDEVAMDCEMVGVGQGNKSALGRVTLVNKWGNVIYDEFVRPIERV
Sbjct: 61  SQKNILIPVNDDFSLTDEVAMDCEMVGVGQGNKSALGRVTLVNKWGNVIYDEFVRPIERV 120

Query: 121 VDFRTQISGIRPCDLKKAKDFPTVQKRVAELIKGKLLVGHALRNDLKALLLSHPKNDVRD 180
           VDFRTQISGIRPCDLKKAKDFPTVQKRVAELIKGKLLVGHALRNDLKALLLSHPKNDVRD
Sbjct: 121 VDFRTQISGIRPCDLKKAKDFPTVQKRVAELIKGKLLVGHALRNDLKALLLSHPKNDVRD 180

Query: 181 TSEYQFFQKEGCKRALRHLAAEFLSVEIQNGEHCPVEDARSAMLLYQKKRKEWEKSVKAE 240
           TSEYQFFQKEGCKRALRHLAAEFLSVEIQNGEHCPVEDARSAMLLYQKKRKEWEKSVKAE
Sbjct: 181 TSEYQFFQKEGCKRALRHLAAEFLSVEIQNGEHCPVEDARSAMLLYQKKRKEWEKSVKAE 240

Query: 241 QKLKLKQKKRKPRKKSKDGGCFE 264
           QKLKLKQKKRKPRKKSKDGG FE
Sbjct: 241 QKLKLKQKKRKPRKKSKDGGGFE 263

[Close]

BLAST of CSPI04G23130 vs. NCBI nr
Match: gi|659127452|ref|XP_008463709.1| (PREDICTED: RNA exonuclease 4 [Cucumis melo])

HSP 1 Score: 493.4 bits (1269), Expect = 2.4e-136
Identity = 254/265 (95.85%), Postives = 258/265 (97.36%), Query Frame = 1


Query: 1   MKSQLKKNPKPKLLNPNWALLQQKLNPHGSNHS--NTVLKSEASSKTLLGKRKERSDVES 60
           M SQLKKNPKPKLLNPNWA+LQQKL PHGSNHS  +TV KSEASSKTLLGKRKERSDVES
Sbjct: 1   MTSQLKKNPKPKLLNPNWAILQQKLKPHGSNHSKASTVPKSEASSKTLLGKRKERSDVES 60

Query: 61  NHSQKNILIPVNDDFSLTDEVAMDCEMVGVGQGNKSALGRVTLVNKWGNVIYDEFVRPIE 120
           NHSQKNILIPVNDDFSLTDEVAMDCEMVGVGQGNKSALGRVTLVNKWGNVIYDEFVRPIE
Sbjct: 61  NHSQKNILIPVNDDFSLTDEVAMDCEMVGVGQGNKSALGRVTLVNKWGNVIYDEFVRPIE 120

Query: 121 RVVDFRTQISGIRPCDLKKAKDFPTVQKRVAELIKGKLLVGHALRNDLKALLLSHPKNDV 180
           RVVDFRTQISGIRPCDLKKAKDFPTVQKRVAELIKGK+LVGHALRNDLKALLLSHPKNDV
Sbjct: 121 RVVDFRTQISGIRPCDLKKAKDFPTVQKRVAELIKGKILVGHALRNDLKALLLSHPKNDV 180

Query: 181 RDTSEYQFFQKEGCKRALRHLAAEFLSVEIQNGEHCPVEDARSAMLLYQKKRKEWEKSVK 240
           RDTSEYQFFQKEGCKRALRHLAAEFL V+IQNGEHCPVEDARSAMLLYQKKRKEWEKSVK
Sbjct: 181 RDTSEYQFFQKEGCKRALRHLAAEFLGVQIQNGEHCPVEDARSAMLLYQKKRKEWEKSVK 240

Query: 241 AEQKLKLKQKKRKPRKKSKDGGCFE 264
           AEQKLKLKQKKRKPRKKSKDGG FE
Sbjct: 241 AEQKLKLKQKKRKPRKKSKDGGGFE 265

[Close]

BLAST of CSPI04G23130 vs. NCBI nr
Match: gi|1009161923|ref|XP_015899157.1| (PREDICTED: RNA exonuclease 4 [Ziziphus jujuba])

HSP 1 Score: 363.2 bits (931), Expect = 3.8e-97
Identity = 196/260 (75.38%), Postives = 214/260 (82.31%), Query Frame = 1


Query: 1   MKSQLKKNPKPKLLNPNWALLQQKLNPHGSNHSNTVLKSEASSKT-LLGKRKERSDVESN 60
           M +Q KKNP    LNPNWA LQQ+L  H S  S     SE+ S T +LGKRKER + E N
Sbjct: 1   MGTQQKKNPNQLQLNPNWANLQQRLKSHSSKPSRRSKDSESESPTSILGKRKERPNAELN 60

Query: 61  HSQK--NILIPVNDDFSLTDEVAMDCEMVGVGQGNKSALGRVTLVNKWGNVIYDEFVRPI 120
            S    N L PVNDD S+TD VAMDCEMVGV QGNKSALGRVTLVNKWGNVIYDEFVRP+
Sbjct: 61  DSGTLINPLTPVNDDISVTDAVAMDCEMVGVSQGNKSALGRVTLVNKWGNVIYDEFVRPV 120

Query: 121 ERVVDFRTQISGIRPCDLKKAKDFPTVQKRVAELIKGKLLVGHALRNDLKALLLSHPKND 180
           ERVVDFRTQISGIRP DLKKAKDF  VQKRVAELIKG++LVGHALRNDLKALLLSHPKND
Sbjct: 121 ERVVDFRTQISGIRPRDLKKAKDFRVVQKRVAELIKGRILVGHALRNDLKALLLSHPKND 180

Query: 181 VRDTSEYQFFQKEGCKRALRHLAAEFLSVEIQNGEHCPVEDARSAMLLYQKKRKEWEKSV 240
           +RDTSEYQ F KEG +RALRHLAAEFL VEIQNGEHCP+EDAR+AM+LYQK RKEWEK +
Sbjct: 181 IRDTSEYQPFLKEGYRRALRHLAAEFLKVEIQNGEHCPIEDARAAMMLYQKNRKEWEKKL 240

Query: 241 KAEQKLKLKQKKRKPRKKSK 258
           K + +LK KQKKRK +KKSK
Sbjct: 241 KDQIRLKQKQKKRKHKKKSK 260

[Close]

BLAST of CSPI04G23130 vs. NCBI nr
Match: gi|657954317|ref|XP_008367142.1| (PREDICTED: RNA exonuclease 4 [Malus domestica])

HSP 1 Score: 352.4 bits (903), Expect = 6.7e-94
Identity = 191/266 (71.80%), Postives = 215/266 (80.83%), Query Frame = 1


Query: 5   LKKNPKPKL---LNPNWALLQQKLNPHGSNHSNTVLKSEASSKTLLGKRKERSDVESNH- 64
           +KKNPK +    LNPNWA LQQKL  HGS           ++ T+LGKRKER DVE N  
Sbjct: 1   MKKNPKQQQQLQLNPNWAQLQQKLKSHGS-----------TTTTILGKRKERLDVELNDD 60

Query: 65  --SQKNILIPVNDDFSLTDEVAMDCEMVGVGQGNKSALGRVTLVNKWGNVIYDEFVRPIE 124
             S+ N L PVNDD SLTDEVAMDCEMVGVGQGNKSALGR+TLVNKWGNV+YDEFVRP+E
Sbjct: 61  SPSRINPLDPVNDDSSLTDEVAMDCEMVGVGQGNKSALGRITLVNKWGNVVYDEFVRPVE 120

Query: 125 RVVDFRTQISGIRPCDLKKAKDFPTVQKRVAELIKGKLLVGHALRNDLKALLLSHPKNDV 184
           RVVDFRTQISGIRP DL+KAKDF  VQK+VAELIKG++LVGHALRNDLKALLLSHPK D+
Sbjct: 121 RVVDFRTQISGIRPRDLRKAKDFRIVQKKVAELIKGRILVGHALRNDLKALLLSHPKGDI 180

Query: 185 RDTSEYQ-FFQKEGCKRALRHLAAEFLSVEIQNGEHCPVEDARSAMLLYQKKRKEWEKSV 244
           RDT EY+ F + EG +RALRHLAAEFL V+IQNGEHCP+EDAR+AM+LYQK RK WEK V
Sbjct: 181 RDTLEYEPFMRGEGSRRALRHLAAEFLDVKIQNGEHCPIEDARAAMVLYQKNRKAWEKMV 240

Query: 245 KAEQKLKLKQKKRKPRKKSKDGGCFE 264
           K + KLK KQKKRKP+KK  +G   E
Sbjct: 241 KDQIKLKQKQKKRKPKKKRTEGDDLE 255

[Close]

BLAST of CSPI04G23130 vs. NCBI nr
Match: gi|802610906|ref|XP_012074203.1| (PREDICTED: RNA exonuclease 4 [Jatropha curcas])

HSP 1 Score: 351.3 bits (900), Expect = 1.5e-93
Identity = 187/264 (70.83%), Postives = 217/264 (82.20%), Query Frame = 1


Query: 6   KKNPKPKL---LNPNWALLQQKLNPHGSNHSNTVLKSEASSKT---LLGKRKERSDVESN 65
           KKNPK +    LNPNWA LQQKLN  GS HS     +++SS+T   +LGKRKER    S+
Sbjct: 8   KKNPKQQKQLPLNPNWAQLQQKLNSSGSRHSRP--SNDSSSETQISVLGKRKERPSSVSD 67

Query: 66  HSQKNILIPVNDDFSLTDEVAMDCEMVGVGQGNKSALGRVTLVNKWGNVIYDEFVRPIER 125
            S  N L P NDD SLTD +AMDCEMVG+GQGNKSALGRVTLVN+WGNVIYDEFVRPIER
Sbjct: 68  ESLPNPLAPTNDDSSLTDVIAMDCEMVGIGQGNKSALGRVTLVNQWGNVIYDEFVRPIER 127

Query: 126 VVDFRTQISGIRPCDLKKAKDFPTVQKRVAELIKGKLLVGHALRNDLKALLLSHPKNDVR 185
           VVDFRT+ISGIRP  L+KAKDFPTVQK+VAELIKG++LVGHAL NDLKALLL+HPK D+R
Sbjct: 128 VVDFRTRISGIRPQHLRKAKDFPTVQKKVAELIKGRVLVGHALSNDLKALLLTHPKKDLR 187

Query: 186 DTSEYQFFQKEGCKRALRHLAAEFLSVEIQNGEHCPVEDARSAMLLYQKKRKEWEKSVKA 245
           DTSEYQ F KE  ++ALRHLAAEFL  +IQNGEHC +EDAR+AMLLYQK RKEWEK++K 
Sbjct: 188 DTSEYQPFLKERRRKALRHLAAEFLGAKIQNGEHCSIEDARAAMLLYQKNRKEWEKNMKD 247

Query: 246 EQKLKLKQKKRKPRKKSKDGGCFE 264
           +++LKLKQKKRK +KK K+G   +
Sbjct: 248 QRRLKLKQKKRKKKKKQKEGDALQ 269

The following BLAST results are available for this feature:

BLAST of CSPI04G23130 vs. Swiss-Prot


Match Name	E-value	Identity	Description
REXO4_XENLA	1.6e-42	48.11	RNA exonuclease 4 OS=Xenopus laevis GN=rexo4 PE=2 SV=2	[more]
REXO4_XENTR	1.0e-41	48.63	RNA exonuclease 4 OS=Xenopus tropicalis GN=rexo4 PE=2 SV=1	[more]
REXO4_HUMAN	3.8e-41	47.67	RNA exonuclease 4 OS=Homo sapiens GN=REXO4 PE=1 SV=2	[more]
REXO4_MOUSE	6.5e-41	47.27	RNA exonuclease 4 OS=Mus musculus GN=Rexo4 PE=2 SV=2	[more]
REXO4_YEAST	6.1e-39	40.59	RNA exonuclease 4 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RE...	[more]

BLAST of CSPI04G23130 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KZK3_CUCSA	4.6e-142	99.62	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G628920 PE=4 SV=1	[more]
E5GBF8_CUCME	1.7e-136	95.85	RNA exonuclease OS=Cucumis melo subsp. melo PE=4 SV=1	[more]
A0A061F8X0_THECC	1.0e-93	73.15	Polynucleotidyl transferase, ribonuclease H-like superfamily protein isoform 1 O...	[more]
A0A067KWR7_JATCU	1.1e-92	70.19	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_09824 PE=4 SV=1	[more]
A0A059BUT1_EUCGR	2.0e-92	67.69	Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_F03289 PE=4 SV=1	[more]

BLAST of CSPI04G23130 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G15080.1	4.3e-91	66.17	Polynucleotidyl transferase, ribonuclease H-like superfamily protein	[more]
AT2G48100.1	2.6e-19	37.57	Exonuclease family protein	[more]
AT5G40310.1	1.1e-17	31.55	Exonuclease family protein	[more]
AT3G27970.1	2.4e-17	28.26	Exonuclease family protein	[more]
AT5G25800.1	6.6e-15	34.90	Polynucleotidyl transferase, ribonuclease H-like superfamily protein	[more]

BLAST of CSPI04G23130 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449456607\|ref\|XP_004146040.1\|	6.6e-142	99.62	PREDICTED: RNA exonuclease 4 [Cucumis sativus]	[more]
gi\|659127452\|ref\|XP_008463709.1\|	2.4e-136	95.85	PREDICTED: RNA exonuclease 4 [Cucumis melo]	[more]
gi\|1009161923\|ref\|XP_015899157.1\|	3.8e-97	75.38	PREDICTED: RNA exonuclease 4 [Ziziphus jujuba]	[more]
gi\|657954317\|ref\|XP_008367142.1\|	6.7e-94	71.80	PREDICTED: RNA exonuclease 4 [Malus domestica]	[more]
gi\|802610906\|ref\|XP_012074203.1\|	1.5e-93	70.83	PREDICTED: RNA exonuclease 4 [Jatropha curcas]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR012337	RNaseH-like_sf
IPR013520	Exonuclease_RNaseT/DNA_pol3

Vocabulary: **Molecular Function**
Term	Definition
GO:0003676	nucleic acid binding

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0090305	nucleic acid phosphodiester bond hydrolysis
biological_process	GO:0009165	nucleotide biosynthetic process
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0004527	exonuclease activity
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0016740	transferase activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI04G23130.1	CSPI04G23130.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (PI183967)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR012337	Ribonuclease H-like domain	GENE3D	G3DSA:3.30.420.10		coord: 78..249 score: 8.6
IPR012337	Ribonuclease H-like domain	unknown	SSF53098	Ribonuclease H-like	coord: 68..230 score: 1.58
IPR013520	Exonuclease, RNase T/DNA polymerase III	PFAM	PF00929	RNase_T	coord: 79..226 score: 5.0
IPR013520	Exonuclease, RNase T/DNA polymerase III	SMART	SM00479	exoiiiendus	coord: 77..235 score: 1.3
None	No IPR available	PANTHER	PTHR12801	EXONUCLEASE	coord: 53..250 score: 2.1

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CSPI04G23130	Cla023351	Watermelon (97103) v1	cpiwmB356
CSPI04G23130	Csa4G628920	Cucumber (Chinese Long) v2	cpicuB181
CSPI04G23130	MELO3C025620	Melon (DHL92) v3.5.1	cpimeB293
CSPI04G23130	ClCG11G017730	Watermelon (Charleston Gray)	cpiwcgB289
CSPI04G23130	Lsi04G020390	Bottle gourd (USVL1VR-Ls)	cpilsiB283
CSPI04G23130	MELO3C025620.2	Melon (DHL92) v3.6.1	cpimedB287
CSPI04G23130	Cla97C11G223760	Watermelon (97103) v2	cpiwmbB286
CSPI04G23130	Bhi09G002842	Wax gourd	cpiwgoB421
CSPI04G23130	Cucsa.122820	Cucumber (Gy14) v1	cgycpiB164
CSPI04G23130	CmaCh09G008350	Cucurbita maxima (Rimu)	cmacpiB021
CSPI04G23130	CmoCh09G008300	Cucurbita moschata (Rifu)	cmocpiB012
CSPI04G23130	Cp4.1LG06g06650	Cucurbita pepo (Zucchini)	cpecpiB785
CSPI04G23130	Carg17072	Silver-seed gourd	carcpiB0194

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CSPI04G23130	Cucurbita moschata (Rifu)	cmocpiB466
CSPI04G23130	Cucumber (Chinese Long) v2	cpicuB171
CSPI04G23130	Cucurbita pepo (Zucchini)	cpecpiB567
CSPI04G23130	Cucurbita pepo (Zucchini)	cpecpiB791
CSPI04G23130	Cucumber (Gy14) v2	cgybcpiB169
CSPI04G23130	Silver-seed gourd	carcpiB0196
CSPI04G23130	Silver-seed gourd	carcpiB0345
CSPI04G23130	Silver-seed gourd	carcpiB0688
CSPI04G23130	Cucumber (Chinese Long) v3	cpicucB212
CSPI04G23130	Wild cucumber (PI 183967)	cpicpiB026
CSPI04G23130	Cucurbita maxima (Rimu)	cmacpiB027
CSPI04G23130	Cucurbita maxima (Rimu)	cmacpiB345
CSPI04G23130	Cucurbita maxima (Rimu)	cmacpiB477