Carg17043 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg17043
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Transmembrane protein
Location	Cucurbita_argyrosperma_scaffold_062 : 182087 .. 182903 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGAAGCCAAGAACAAGTGAAGCATCTTGAGGAGTGCTCAGTTTCAAAGTAAGTAAGCTCTCTCCTCCTACCTTTTCTCTTACACGGCTTTAGACTTGAAAATGAAGAATTTCTCTTGAATCTTATATTATTAGCATCATCTTGTTGTGCAAATAAATCCCAAATTGCTTATCATAAAATTTGAGCAGAATTTTCCTAAACCCAGGGAGAATCCCATTGTTTGTGTTTCTGGATCAAATGGAAGCAGAAACTTTGTTCGAAACGTTGTGTCAAACGTTTTAACTTTTTGGTAGTCACGGTTTAAATTCTGGTGAGTATGACCATTCGAGCACCGTGTGAGATCCCACATCGGTGGGAGAGGGGAACAAAACATACTCTATAAGGGTGTGGAAACATCTCCCTAGCAAACGCATTCTAAAACCGTAAGATTGATGGCGATACGTAATGGGCCAAAGCGGACAATATCTGCTAGCAGTGAACTTGGGCTATAATACACCATGTTTCGTTTTTTTTTTTTTTTTTTTTGTTCTTTCAACTGGATTTTCTCTTGAGATTTGATTGATTATTGTGCATTCCACAGTGCGCTGGGCACTTGGGTATTCTCAGTAGCAGGAGCGTTGCTAGCAATTCCAGTGGGAATAAAGAGGAAGTCACTGGCACCCCTTGTGTTTTTTGGCACAACTGGTACAATGCTTGATATCATAATGGGAATCAGTGCCTGTGAAAGAGAACATGCTGAGCGTCAAATGAAGCTATTAGAAGCCCAAAACTCTGCAGCCGAAGCTTCTGTTAACCAATCTGAGTCCCTTTCTTGA

mRNA sequence

ATGGGAAGCCAAGAACAAGTGAAGCATCTTGAGGAGTGCTCAGTTTCAAATGCGCTGGGCACTTGGGTATTCTCAGTAGCAGGAGCGTTGCTAGCAATTCCAGTGGGAATAAAGAGGAAGTCACTGGCACCCCTTGTGTTTTTTGGCACAACTGGTACAATGCTTGATATCATAATGGGAATCAGTGCCTGTGAAAGAGAACATGCTGAGCGTCAAATGAAGCTATTAGAAGCCCAAAACTCTGCAGCCGAAGCTTCTGTTAACCAATCTGAGTCCCTTTCTTGA

Coding sequence (CDS)

ATGGGAAGCCAAGAACAAGTGAAGCATCTTGAGGAGTGCTCAGTTTCAAATGCGCTGGGCACTTGGGTATTCTCAGTAGCAGGAGCGTTGCTAGCAATTCCAGTGGGAATAAAGAGGAAGTCACTGGCACCCCTTGTGTTTTTTGGCACAACTGGTACAATGCTTGATATCATAATGGGAATCAGTGCCTGTGAAAGAGAACATGCTGAGCGTCAAATGAAGCTATTAGAAGCCCAAAACTCTGCAGCCGAAGCTTCTGTTAACCAATCTGAGTCCCTTTCTTGA

Protein sequence

MGSQEQVKHLEECSVSNALGTWVFSVAGALLAIPVGIKRKSLAPLVFFGTTGTMLDIIMGISACEREHAERQMKLLEAQNSAAEASVNQSESLS

Homology

[Close]

BLAST of Carg17043 vs. NCBI nr
Match: XP_022937150.1 (uncharacterized protein LOC111443534 [Cucurbita moschata] >XP_023536610.1 uncharacterized protein LOC111797732 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 178.3 bits (451), Expect = 1.2e-41
Identity = 93/94 (98.94%), Postives = 94/94 (100.00%), Query Frame = 0


Query: 1  MGSQEQVKHLEECSVSNALGTWVFSVAGALLAIPVGIKRKSLAPLVFFGTTGTMLDIIMG 60
          MGSQEQVKHLEECSVSNALGTWVFSVAGALLAIPVGIKRKSLAPLVFFGTTGTMLDIIMG
Sbjct: 1  MGSQEQVKHLEECSVSNALGTWVFSVAGALLAIPVGIKRKSLAPLVFFGTTGTMLDIIMG 60

Query: 61 ISACEREHAERQMKLLEAQNSAAEASVNQSESLS 95
          ISACEREHAERQMKLLEAQNSAAEASVN+SESLS
Sbjct: 61 ISACEREHAERQMKLLEAQNSAAEASVNESESLS 94

[Close]

BLAST of Carg17043 vs. NCBI nr
Match: XP_022976612.1 (uncharacterized protein LOC111476955 [Cucurbita maxima])

HSP 1 Score: 177.9 bits (450), Expect = 1.6e-41
Identity = 92/94 (97.87%), Postives = 94/94 (100.00%), Query Frame = 0


Query: 1  MGSQEQVKHLEECSVSNALGTWVFSVAGALLAIPVGIKRKSLAPLVFFGTTGTMLDIIMG 60
          MGSQEQVKHLEECSVSNALGTWVFSVAGALLAIPVGIKRKSLAPLVFFGTTGTMLDIIMG
Sbjct: 1  MGSQEQVKHLEECSVSNALGTWVFSVAGALLAIPVGIKRKSLAPLVFFGTTGTMLDIIMG 60

Query: 61 ISACEREHAERQMKLLEAQNSAAEASVNQSESLS 95
          +SACEREHAERQMKLLEAQNSAAEASVN+SESLS
Sbjct: 61 VSACEREHAERQMKLLEAQNSAAEASVNESESLS 94

[Close]

BLAST of Carg17043 vs. NCBI nr
Match: XP_022138625.1 (uncharacterized protein LOC111009737 [Momordica charantia])

HSP 1 Score: 166.8 bits (421), Expect = 3.6e-38
Identity = 88/94 (93.62%), Postives = 89/94 (94.68%), Query Frame = 0


Query: 1  MGSQEQVKHLEECSVSNALGTWVFSVAGALLAIPVGIKRKSLAPLVFFGTTGTMLDIIMG 60
          MGS E VKHLEECSVSNALGTWVFSVAGALLAIPVGIKRKSLAPLVFFGTTGTMLDIIMG
Sbjct: 1  MGSHENVKHLEECSVSNALGTWVFSVAGALLAIPVGIKRKSLAPLVFFGTTGTMLDIIMG 60

Query: 61 ISACEREHAERQMKLLEAQNSAAEASVNQSESLS 95
          ISACEREHAERQMKLLEAQNSAA+ASV  SES S
Sbjct: 61 ISACEREHAERQMKLLEAQNSAADASVADSESHS 94

[Close]

BLAST of Carg17043 vs. NCBI nr
Match: NP_001237897.2 (uncharacterized protein LOC100527306 [Glycine max] >KHN07238.1 hypothetical protein glysoja_045027 [Glycine soja] >KRH16567.1 hypothetical protein GLYMA_14G162800 [Glycine max])

HSP 1 Score: 161.0 bits (406), Expect = 2.0e-36
Identity = 81/91 (89.01%), Postives = 87/91 (95.60%), Query Frame = 0


Query: 1  MGSQEQVKHLEECSVSNALGTWVFSVAGALLAIPVGIKRKSLAPLVFFGTTGTMLDIIMG 60
          MG +E VKHLE+CSVSNALGTWVFSVAGALLAIPVGIKRKSLAPLVFFGTTGTMLDIIMG
Sbjct: 1  MGGEENVKHLEDCSVSNALGTWVFSVAGALLAIPVGIKRKSLAPLVFFGTTGTMLDIIMG 60

Query: 61 ISACEREHAERQMKLLEAQNSAAEASVNQSE 92
          ISACEREHAERQMKLLEAQN+AAE S+ ++E
Sbjct: 61 ISACEREHAERQMKLLEAQNAAAETSLGETE 91

[Close]

BLAST of Carg17043 vs. NCBI nr
Match: XP_023525801.1 (uncharacterized protein LOC111789310 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 161.0 bits (406), Expect = 2.0e-36
Identity = 87/95 (91.58%), Postives = 89/95 (93.68%), Query Frame = 0


Query: 1  MGSQEQVKHLEECSVSNALGTWVFSVAGALLAIPVGIKRKSLAPLVFFGTTGTMLDIIMG 60
          MGSQE VKHLEECSVSNALGTWVFSVAGALLAIPVGIKRKSLAPLVFFGTTGTMLDIIMG
Sbjct: 1  MGSQENVKHLEECSVSNALGTWVFSVAGALLAIPVGIKRKSLAPLVFFGTTGTMLDIIMG 60

Query: 61 ISACEREHAERQMKLL-EAQNSAAEASVNQSESLS 95
          ISACEREHAERQMKLL EAQNSA E SV +S+S S
Sbjct: 61 ISACEREHAERQMKLLEEAQNSAPEPSVAESQSHS 95

[Close]

BLAST of Carg17043 vs. TAIR10
Match: AT1G21930.1 (unknown protein)

HSP 1 Score: 139.0 bits (349), Expect = 1.5e-33
Identity = 67/77 (87.01%), Postives = 72/77 (93.51%), Query Frame = 0


Query: 1  MGSQEQVKHLEECSVSNALGTWVFSVAGALLAIPVGIKRKSLAPLVFFGTTGTMLDIIMG 60
          MGSQE VKHLEEC+VSNALGTWVFSV GAL+AIPVGIKRKSL PLVFFGTTGTMLDII+G
Sbjct: 1  MGSQENVKHLEECTVSNALGTWVFSVLGALVAIPVGIKRKSLGPLVFFGTTGTMLDIIIG 60

Query: 61 ISACEREHAERQMKLLE 78
          +S CEREHAE QMKLL+
Sbjct: 61 VSQCEREHAEHQMKLLQ 77

[Close]

BLAST of Carg17043 vs. TAIR10
Match: AT3G42150.2 (unknown protein)

HSP 1 Score: 135.2 bits (339), Expect = 2.1e-32
Identity = 65/77 (84.42%), Postives = 71/77 (92.21%), Query Frame = 0


Query: 1  MGSQEQVKHLEECSVSNALGTWVFSVAGALLAIPVGIKRKSLAPLVFFGTTGTMLDIIMG 60
          MGSQ+ VKHLEEC+VSNALGTWVFSV GAL+AIPVGIKRKSL PLVFFGTTGTMLDII+G
Sbjct: 1  MGSQKNVKHLEECTVSNALGTWVFSVLGALVAIPVGIKRKSLGPLVFFGTTGTMLDIIIG 60

Query: 61 ISACEREHAERQMKLLE 78
          +S CEREHAE Q KLL+
Sbjct: 61 VSQCEREHAEHQTKLLQ 77

[Close]

BLAST of Carg17043 vs. TrEMBL
Match: tr|I1MAK6|I1MAK6_SOYBN (Uncharacterized protein OS=Glycine max OX=3847 GN=GLYMA_14G162800 PE=4 SV=1)

HSP 1 Score: 161.0 bits (406), Expect = 1.3e-36
Identity = 81/91 (89.01%), Postives = 87/91 (95.60%), Query Frame = 0


Query: 1  MGSQEQVKHLEECSVSNALGTWVFSVAGALLAIPVGIKRKSLAPLVFFGTTGTMLDIIMG 60
          MG +E VKHLE+CSVSNALGTWVFSVAGALLAIPVGIKRKSLAPLVFFGTTGTMLDIIMG
Sbjct: 1  MGGEENVKHLEDCSVSNALGTWVFSVAGALLAIPVGIKRKSLAPLVFFGTTGTMLDIIMG 60

Query: 61 ISACEREHAERQMKLLEAQNSAAEASVNQSE 92
          ISACEREHAERQMKLLEAQN+AAE S+ ++E
Sbjct: 61 ISACEREHAERQMKLLEAQNAAAETSLGETE 91

[Close]

BLAST of Carg17043 vs. TrEMBL
Match: tr|A0A0B2PI48|A0A0B2PI48_GLYSO (Uncharacterized protein OS=Glycine soja OX=3848 GN=glysoja_045027 PE=4 SV=1)

HSP 1 Score: 161.0 bits (406), Expect = 1.3e-36
Identity = 81/91 (89.01%), Postives = 87/91 (95.60%), Query Frame = 0


Query: 1  MGSQEQVKHLEECSVSNALGTWVFSVAGALLAIPVGIKRKSLAPLVFFGTTGTMLDIIMG 60
          MG +E VKHLE+CSVSNALGTWVFSVAGALLAIPVGIKRKSLAPLVFFGTTGTMLDIIMG
Sbjct: 1  MGGEENVKHLEDCSVSNALGTWVFSVAGALLAIPVGIKRKSLAPLVFFGTTGTMLDIIMG 60

Query: 61 ISACEREHAERQMKLLEAQNSAAEASVNQSE 92
          ISACEREHAERQMKLLEAQN+AAE S+ ++E
Sbjct: 61 ISACEREHAERQMKLLEAQNAAAETSLGETE 91

[Close]

BLAST of Carg17043 vs. TrEMBL
Match: tr|A0A0S3RN86|A0A0S3RN86_PHAAN (Uncharacterized protein OS=Vigna angularis var. angularis OX=157739 GN=Vigan.03G201800 PE=4 SV=1)

HSP 1 Score: 160.2 bits (404), Expect = 2.2e-36
Identity = 80/91 (87.91%), Postives = 88/91 (96.70%), Query Frame = 0


Query: 1  MGSQEQVKHLEECSVSNALGTWVFSVAGALLAIPVGIKRKSLAPLVFFGTTGTMLDIIMG 60
          MGS++ VKHLE+CSVSNALGTWVFSVAGALLAIPVGIKRKSLAPLVFFGTTGTMLDIIMG
Sbjct: 1  MGSEDNVKHLEDCSVSNALGTWVFSVAGALLAIPVGIKRKSLAPLVFFGTTGTMLDIIMG 60

Query: 61 ISACEREHAERQMKLLEAQNSAAEASVNQSE 92
          I+ACEREHAERQMKLLEAQN+AAE S+ ++E
Sbjct: 61 ITACEREHAERQMKLLEAQNAAAETSLGETE 91

[Close]

BLAST of Carg17043 vs. TrEMBL
Match: tr|C6T3X8|C6T3X8_SOYBN (Uncharacterized protein OS=Glycine max OX=3847 PE=2 SV=1)

HSP 1 Score: 159.8 bits (403), Expect = 2.9e-36
Identity = 80/91 (87.91%), Postives = 87/91 (95.60%), Query Frame = 0


Query: 1  MGSQEQVKHLEECSVSNALGTWVFSVAGALLAIPVGIKRKSLAPLVFFGTTGTMLDIIMG 60
          MG +E VKHLE+CSVSNALGTWVFSVAGALLAIPVGIKR+SLAPLVFFGTTGTMLDIIMG
Sbjct: 1  MGGEENVKHLEDCSVSNALGTWVFSVAGALLAIPVGIKRRSLAPLVFFGTTGTMLDIIMG 60

Query: 61 ISACEREHAERQMKLLEAQNSAAEASVNQSE 92
          ISACEREHAERQMKLLEAQN+AAE S+ ++E
Sbjct: 61 ISACEREHAERQMKLLEAQNAAAETSLGETE 91

[Close]

BLAST of Carg17043 vs. TrEMBL
Match: tr|A0A0A0L1X1|A0A0A0L1X1_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G371820 PE=4 SV=1)

HSP 1 Score: 159.5 bits (402), Expect = 3.8e-36
Identity = 84/93 (90.32%), Postives = 87/93 (93.55%), Query Frame = 0


Query: 1  MGSQEQVKHLEECSVSNALGTWVFSVAGALLAIPVGIKRKSLAPLVFFGTTGTMLDIIMG 60
          MGSQE VKH+E+CSVSNALGTWVFSVAGALLAIPVGIKRKSLAPLVFFGTTGTMLDIIMG
Sbjct: 1  MGSQENVKHIEDCSVSNALGTWVFSVAGALLAIPVGIKRKSLAPLVFFGTTGTMLDIIMG 60

Query: 61 ISACEREHAERQMKLL-EAQNSAAEASVNQSES 93
          ISACEREHAERQMKLL EAQNSA EA +N S S
Sbjct: 61 ISACEREHAERQMKLLEEAQNSATEAFLNDSNS 93

The following BLAST results are available for this feature:

BLAST of Carg17043 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022937150.1	1.2e-41	98.94	uncharacterized protein LOC111443534 [Cucurbita moschata] >XP_023536610.1 unchar...	[more]
XP_022976612.1	1.6e-41	97.87	uncharacterized protein LOC111476955 [Cucurbita maxima]	[more]
XP_022138625.1	3.6e-38	93.62	uncharacterized protein LOC111009737 [Momordica charantia]	[more]
NP_001237897.2	2.0e-36	89.01	uncharacterized protein LOC100527306 [Glycine max] >KHN07238.1 hypothetical prot...	[more]
XP_023525801.1	2.0e-36	91.58	uncharacterized protein LOC111789310 [Cucurbita pepo subsp. pepo]	[more]

BLAST of Carg17043 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G21930.1	1.5e-33	87.01	unknown protein	[more]
AT3G42150.2	2.1e-32	84.42	unknown protein	[more]

BLAST of Carg17043 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Carg17043 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|I1MAK6\|I1MAK6_SOYBN	1.3e-36	89.01	Uncharacterized protein OS=Glycine max OX=3847 GN=GLYMA_14G162800 PE=4 SV=1	[more]
tr\|A0A0B2PI48\|A0A0B2PI48_GLYSO	1.3e-36	89.01	Uncharacterized protein OS=Glycine soja OX=3848 GN=glysoja_045027 PE=4 SV=1	[more]
tr\|A0A0S3RN86\|A0A0S3RN86_PHAAN	2.2e-36	87.91	Uncharacterized protein OS=Vigna angularis var. angularis OX=157739 GN=Vigan.03G...	[more]
tr\|C6T3X8\|C6T3X8_SOYBN	2.9e-36	87.91	Uncharacterized protein OS=Glycine max OX=3847 PE=2 SV=1	[more]
tr\|A0A0A0L1X1\|A0A0A0L1X1_CUCSA	3.8e-36	90.32	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G371820 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg17043-RA	Carg17043-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 66..93
None	No IPR available	PANTHER	PTHR35691	FAMILY NOT NAMED	coord: 1..92

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg17043	Cla023153	Watermelon (97103) v1	carwmB0161
Carg17043	MELO3C010460	Melon (DHL92) v3.5.1	carmeB0174
Carg17043	ClCG11G015600	Watermelon (Charleston Gray)	carwcgB0162
Carg17043	CSPI04G18000	Wild cucumber (PI 183967)	carcpiB0195
Carg17043	CmaCh01G013860	Cucurbita maxima (Rimu)	carcmaB0228
Carg17043	CmaCh09G008070	Cucurbita maxima (Rimu)	carcmaB0224
Carg17043	CmoCh09G008000	Cucurbita moschata (Rifu)	carcmoB0235
Carg17043	CmoCh01G014370	Cucurbita moschata (Rifu)	carcmoB0238
Carg17043	Lsi04G023770	Bottle gourd (USVL1VR-Ls)	carlsiB152
Carg17043	Cp4.1LG06g06270	Cucurbita pepo (Zucchini)	carcpeB0245
Carg17043	MELO3C010460.2	Melon (DHL92) v3.6.1	carmedB0177
Carg17043	CsaV3_4G028420	Cucumber (Chinese Long) v3	carcucB0195
Carg17043	Cla97C11G221640	Watermelon (97103) v2	carwmbB0176
Carg17043	Bhi09G002228	Wax gourd	carwgoB0220

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Carg17043	Carg00334	Silver-seed gourd	carcarB205

The following block(s) are covering this gene:


Gene	Organism	Block
Carg17043	Silver-seed gourd	carcarB203
Carg17043	Cucumber (Gy14) v2	carcgybB0183
Carg17043	Cucurbita maxima (Rimu)	carcmaB0226
Carg17043	Cucurbita moschata (Rifu)	carcmoB0236
Carg17043	Cucurbita pepo (Zucchini)	carcpeB0244
Carg17043	Wild cucumber (PI 183967)	carcpiB0196
Carg17043	Cucumber (Chinese Long) v2	carcuB0188
Carg17043	Cucumber (Chinese Long) v2	carcuB0189
Carg17043	Cucumber (Chinese Long) v3	carcucB0196
Carg17043	Bottle gourd (USVL1VR-Ls)	carlsiB153
Carg17043	Melon (DHL92) v3.5.1	carmeB0176
Carg17043	Melon (DHL92) v3.6.1	carmedB0179
Carg17043	Watermelon (Charleston Gray)	carwcgB0163
Carg17043	Watermelon (97103) v1	carwmB0162
Carg17043	Watermelon (97103) v2	carwmbB0177