Carg00334 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg00334
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Transmembrane protein
Location	Cucurbita_argyrosperma_scaffold_001 : 1814548 .. 1816069 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAACTAGCGTTTGACTGTGTTTGCCGCATTGATGAATTGAATCCTCCATGGACACCTCTTTCTGATAGTTAACTGTTCTGGAGATGCATGATCTTGAAATCTCATGAATTATTCTTTTCAAGTGTTCTAATCGTGAAGTTGAATTCTGCTGAATGTTTTAATGTGTTTGCCACATTGATGAATTGAACTCCTCCATGGCGCCTCTTTCTGATAGTTAACTGTTCTGGAGATGCACTATCTTGAAATCTCCTGAATTCTTCTTTTCAAGTGTTCTAATCGTGAAGTTGAATTCTGCTGAATGTTTTAATGTGTTTGCCACATTGATGAATTGAATTCCTCCAGGGACACCTCTTTCGGATAGTCAACTGTTCTGGATATGCATTATCTTGAAATCTCATGAATTATTCTTTTGAAGTGTTCTAATCGCGAAGTTGAATTCTGCTGAATGTTTTAATGTTGTTCGCTGACATCTCCTCTTTCTCTCTCTCAGCTAATAGTCAAGTTGAATTTCGCTGGTGTTTCTCATAAGTAATTGAGCTCATTCAATTGCGGGCGAGATATGGGAAGCCAAGAAACCGTTAAACATCTCGAGGAGTGTTCAGTGTCAAAGTAAGCTGTCACCTCCTACCTTTTCTTCTATATTGTTATCATCTCTGATGCGTTTTCTCCTTTTTCAATTGTTGAAAACCGGATTATCTGCTTCATGAAGGAAAAAAAAAAGAAAAAAAAAAAGGAACTTTAAAATGTTTATATGGCCATGATTTAAACTTCGGTAAAACAACCTAGTTGTTCTCGTTATCTATTTTAGCTATTACTAAGGTTATTTGGCTAAGATGACAGAAAGAATCTTATGAAGTTTTACAGTTTGAAATCTAAACTAGATTGTTTTGTCATTGTAATCTTGCATTCCGCTCATTCGAGCATAGTGTTTTGTTCATTTGACCAATGATTATAGGCGCCCTCGAGGCTTCGCCTCTTGAAGAGGCAAGAGGCAAGACGCAAGCCTTGAGGCACTATAAAGCGTAAGCCTCAACTTTAATCTAAAATGATATCTTTAACGTCGCTACTATTATCACTAATAGGATTGACTTAGTCTAGAAATTCTAGTCCTCAATGTTTTTATAGCTTAAGTAGTAAAAGTAGCTATATTTGAATTGTTACAACTCGACCCTTTATACTTTAGAGAAGGATGCAAATTAATATGATTTTACGAGGTATGGAGACTTTAAGCCTCTCATGGTCCAAAAAAGGGTGAGTTAGAGTCCCCAGCCTCAAATTATAAACCTCAATAGCCTTTTAAGCGTTGATTTTGGGTTGATTCTTACTTGTCATTGAACATTCACACAGTGCGTTGGGAACTTGGGTATTCTCAGTAGCAGGAGCGTTGCTAGCAATTCCAGTGGGAATAAAGAGGAAGTCTCTGGCACCCCTTGTGTTTTTTGGCACAACTGGTACAATGCTTGATATCATAATGGGAATTAGTGCCTGTGAGAGAGAACACATGCTGAGCGTCAAATGA

mRNA sequence

ATGGAACTAGCGTTTGACTGTGTTTGCCGCATTGATGAATTGAATCCTCCATGGACACCTCTTTCTGATAGAGCGTTGCTAGCAATTCCAGTGGGAATAAAGAGGAAGTCTCTGGCACCCCTTGTGTTTTTTGGCACAACTGGTACAATGCTTGATATCATAATGGGAATTAGTGCCTGTGAGAGAGAACACATGCTGAGCGTCAAATGA

Coding sequence (CDS)

ATGGAACTAGCGTTTGACTGTGTTTGCCGCATTGATGAATTGAATCCTCCATGGACACCTCTTTCTGATAGAGCGTTGCTAGCAATTCCAGTGGGAATAAAGAGGAAGTCTCTGGCACCCCTTGTGTTTTTTGGCACAACTGGTACAATGCTTGATATCATAATGGGAATTAGTGCCTGTGAGAGAGAACACATGCTGAGCGTCAAATGA

Protein sequence

MELAFDCVCRIDELNPPWTPLSDRALLAIPVGIKRKSLAPLVFFGTTGTMLDIIMGISACEREHMLSVK

Homology

[Close]

BLAST of Carg00334 vs. NCBI nr
Match: XP_010091363.1 (uncharacterized protein LOC21403073 [Morus notabilis] >XP_024018133.1 uncharacterized protein LOC21403073 [Morus notabilis] >EXB44353.1 hypothetical protein L484_020165 [Morus notabilis])

HSP 1 Score: 86.7 bits (213), Expect = 3.5e-14
Identity = 43/56 (76.79%), Postives = 44/56 (78.57%), Query Frame = 0


Query: 9  CRIDELNPPWTPLSDRALLAIPVGIKRKSLAPLVFFGTTGTMLDIIMGISACEREH 65
          C + E    W      ALLAIPVGIKRKSLAPLVFFGTTGTMLDIIMGISACEREH
Sbjct: 13 CSVSEALGTWVFSVAGALLAIPVGIKRKSLAPLVFFGTTGTMLDIIMGISACEREH 68

[Close]

BLAST of Carg00334 vs. NCBI nr
Match: XP_004142617.1 (PREDICTED: uncharacterized protein LOC101216487 isoform X2 [Cucumis sativus] >XP_011653817.1 PREDICTED: uncharacterized protein LOC101216487 isoform X2 [Cucumis sativus] >KGN54582.1 hypothetical protein Csa_4G371820 [Cucumis sativus])

HSP 1 Score: 84.7 bits (208), Expect = 1.3e-13
Identity = 42/56 (75.00%), Postives = 43/56 (76.79%), Query Frame = 0


Query: 9  CRIDELNPPWTPLSDRALLAIPVGIKRKSLAPLVFFGTTGTMLDIIMGISACEREH 65
          C +      W      ALLAIPVGIKRKSLAPLVFFGTTGTMLDIIMGISACEREH
Sbjct: 13 CSVSNALGTWVFSVAGALLAIPVGIKRKSLAPLVFFGTTGTMLDIIMGISACEREH 68

[Close]

BLAST of Carg00334 vs. NCBI nr
Match: XP_004235164.1 (uncharacterized protein LOC101261003 [Solanum lycopersicum])

HSP 1 Score: 84.7 bits (208), Expect = 1.3e-13
Identity = 42/56 (75.00%), Postives = 43/56 (76.79%), Query Frame = 0


Query: 9  CRIDELNPPWTPLSDRALLAIPVGIKRKSLAPLVFFGTTGTMLDIIMGISACEREH 65
          C +      W      ALLAIPVGIKRKSLAPLVFFGTTGTMLDIIMGISACEREH
Sbjct: 13 CSVSNALGTWVFSVAGALLAIPVGIKRKSLAPLVFFGTTGTMLDIIMGISACEREH 68

[Close]

BLAST of Carg00334 vs. NCBI nr
Match: XP_007019000.1 (PREDICTED: uncharacterized protein LOC18592296 [Theobroma cacao] >EOY16225.1 Uncharacterized protein TCM_035067 [Theobroma cacao])

HSP 1 Score: 84.7 bits (208), Expect = 1.3e-13
Identity = 42/56 (75.00%), Postives = 43/56 (76.79%), Query Frame = 0


Query: 9  CRIDELNPPWTPLSDRALLAIPVGIKRKSLAPLVFFGTTGTMLDIIMGISACEREH 65
          C +      W      ALLAIPVGIKRKSLAPLVFFGTTGTMLDIIMGISACEREH
Sbjct: 12 CSVSNALGTWVFSVAGALLAIPVGIKRKSLAPLVFFGTTGTMLDIIMGISACEREH 67

[Close]

BLAST of Carg00334 vs. NCBI nr
Match: XP_006358250.1 (PREDICTED: uncharacterized protein LOC102595801 [Solanum tuberosum])

HSP 1 Score: 84.7 bits (208), Expect = 1.3e-13
Identity = 42/56 (75.00%), Postives = 43/56 (76.79%), Query Frame = 0


Query: 9  CRIDELNPPWTPLSDRALLAIPVGIKRKSLAPLVFFGTTGTMLDIIMGISACEREH 65
          C +      W      ALLAIPVGIKRKSLAPLVFFGTTGTMLDIIMGISACEREH
Sbjct: 13 CSVSNALGTWVFSVAGALLAIPVGIKRKSLAPLVFFGTTGTMLDIIMGISACEREH 68

[Close]

BLAST of Carg00334 vs. TAIR10
Match: AT1G21930.1 (unknown protein)

HSP 1 Score: 77.4 bits (189), Expect = 3.8e-15
Identity = 37/56 (66.07%), Postives = 41/56 (73.21%), Query Frame = 0


Query: 9  CRIDELNPPWTPLSDRALLAIPVGIKRKSLAPLVFFGTTGTMLDIIMGISACEREH 65
          C +      W      AL+AIPVGIKRKSL PLVFFGTTGTMLDII+G+S CEREH
Sbjct: 13 CTVSNALGTWVFSVLGALVAIPVGIKRKSLGPLVFFGTTGTMLDIIIGVSQCEREH 68

[Close]

BLAST of Carg00334 vs. TAIR10
Match: AT3G42150.2 (unknown protein)

HSP 1 Score: 77.4 bits (189), Expect = 3.8e-15
Identity = 37/56 (66.07%), Postives = 41/56 (73.21%), Query Frame = 0


Query: 9  CRIDELNPPWTPLSDRALLAIPVGIKRKSLAPLVFFGTTGTMLDIIMGISACEREH 65
          C +      W      AL+AIPVGIKRKSL PLVFFGTTGTMLDII+G+S CEREH
Sbjct: 13 CTVSNALGTWVFSVLGALVAIPVGIKRKSLGPLVFFGTTGTMLDIIIGVSQCEREH 68

[Close]

BLAST of Carg00334 vs. TrEMBL
Match: tr|W9QN44|W9QN44_9ROSA (Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_020165 PE=4 SV=1)

HSP 1 Score: 86.7 bits (213), Expect = 2.3e-14
Identity = 43/56 (76.79%), Postives = 44/56 (78.57%), Query Frame = 0


Query: 9  CRIDELNPPWTPLSDRALLAIPVGIKRKSLAPLVFFGTTGTMLDIIMGISACEREH 65
          C + E    W      ALLAIPVGIKRKSLAPLVFFGTTGTMLDIIMGISACEREH
Sbjct: 13 CSVSEALGTWVFSVAGALLAIPVGIKRKSLAPLVFFGTTGTMLDIIMGISACEREH 68

[Close]

BLAST of Carg00334 vs. TrEMBL
Match: tr|I1MAK6|I1MAK6_SOYBN (Uncharacterized protein OS=Glycine max OX=3847 GN=GLYMA_14G162800 PE=4 SV=1)

HSP 1 Score: 84.7 bits (208), Expect = 8.7e-14
Identity = 42/56 (75.00%), Postives = 43/56 (76.79%), Query Frame = 0


Query: 9  CRIDELNPPWTPLSDRALLAIPVGIKRKSLAPLVFFGTTGTMLDIIMGISACEREH 65
          C +      W      ALLAIPVGIKRKSLAPLVFFGTTGTMLDIIMGISACEREH
Sbjct: 13 CSVSNALGTWVFSVAGALLAIPVGIKRKSLAPLVFFGTTGTMLDIIMGISACEREH 68

[Close]

BLAST of Carg00334 vs. TrEMBL
Match: tr|I1LW52|I1LW52_SOYBN (Uncharacterized protein OS=Glycine max OX=3847 GN=100815781 PE=4 SV=1)

HSP 1 Score: 84.7 bits (208), Expect = 8.7e-14
Identity = 42/56 (75.00%), Postives = 43/56 (76.79%), Query Frame = 0


Query: 9  CRIDELNPPWTPLSDRALLAIPVGIKRKSLAPLVFFGTTGTMLDIIMGISACEREH 65
          C +      W      ALLAIPVGIKRKSLAPLVFFGTTGTMLDIIMGISACEREH
Sbjct: 13 CSVSNALGTWVFSVAGALLAIPVGIKRKSLAPLVFFGTTGTMLDIIMGISACEREH 68

[Close]

BLAST of Carg00334 vs. TrEMBL
Match: tr|A0A1U8N2H7|A0A1U8N2H7_GOSHI (uncharacterized protein LOC107901400 OS=Gossypium hirsutum OX=3635 GN=LOC107942786 PE=4 SV=1)

HSP 1 Score: 84.7 bits (208), Expect = 8.7e-14
Identity = 42/56 (75.00%), Postives = 43/56 (76.79%), Query Frame = 0


Query: 9  CRIDELNPPWTPLSDRALLAIPVGIKRKSLAPLVFFGTTGTMLDIIMGISACEREH 65
          C +      W      ALLAIPVGIKRKSLAPLVFFGTTGTMLDIIMGISACEREH
Sbjct: 12 CSVSNALGTWVFSVAGALLAIPVGIKRKSLAPLVFFGTTGTMLDIIMGISACEREH 67

[Close]

BLAST of Carg00334 vs. TrEMBL
Match: tr|A0A1S3B9M1|A0A1S3B9M1_CUCME (uncharacterized protein LOC103487570 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103487570 PE=4 SV=1)

HSP 1 Score: 84.7 bits (208), Expect = 8.7e-14
Identity = 42/56 (75.00%), Postives = 43/56 (76.79%), Query Frame = 0


Query: 9  CRIDELNPPWTPLSDRALLAIPVGIKRKSLAPLVFFGTTGTMLDIIMGISACEREH 65
          C +      W      ALLAIPVGIKRKSLAPLVFFGTTGTMLDIIMGISACEREH
Sbjct: 13 CSVSNALGTWVFSVAGALLAIPVGIKRKSLAPLVFFGTTGTMLDIIMGISACEREH 68

The following BLAST results are available for this feature:

BLAST of Carg00334 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_010091363.1	3.5e-14	76.79	uncharacterized protein LOC21403073 [Morus notabilis] >XP_024018133.1 uncharacte...	[more]
XP_004142617.1	1.3e-13	75.00	PREDICTED: uncharacterized protein LOC101216487 isoform X2 [Cucumis sativus] >XP...	[more]
XP_004235164.1	1.3e-13	75.00	uncharacterized protein LOC101261003 [Solanum lycopersicum]	[more]
XP_007019000.1	1.3e-13	75.00	PREDICTED: uncharacterized protein LOC18592296 [Theobroma cacao] >EOY16225.1 Unc...	[more]
XP_006358250.1	1.3e-13	75.00	PREDICTED: uncharacterized protein LOC102595801 [Solanum tuberosum]	[more]

BLAST of Carg00334 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G21930.1	3.8e-15	66.07	unknown protein	[more]
AT3G42150.2	3.8e-15	66.07	unknown protein	[more]

BLAST of Carg00334 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Carg00334 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|W9QN44\|W9QN44_9ROSA	2.3e-14	76.79	Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_020165 PE=4 SV=1	[more]
tr\|I1MAK6\|I1MAK6_SOYBN	8.7e-14	75.00	Uncharacterized protein OS=Glycine max OX=3847 GN=GLYMA_14G162800 PE=4 SV=1	[more]
tr\|I1LW52\|I1LW52_SOYBN	8.7e-14	75.00	Uncharacterized protein OS=Glycine max OX=3847 GN=100815781 PE=4 SV=1	[more]
tr\|A0A1U8N2H7\|A0A1U8N2H7_GOSHI	8.7e-14	75.00	uncharacterized protein LOC107901400 OS=Gossypium hirsutum OX=3635 GN=LOC1079427...	[more]
tr\|A0A1S3B9M1\|A0A1S3B9M1_CUCME	8.7e-14	75.00	uncharacterized protein LOC103487570 isoform X2 OS=Cucumis melo OX=3656 GN=LOC10...	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg00334-RA	Carg00334-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR35691	FAMILY NOT NAMED	coord: 24..65

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg00334	Cla023153	Watermelon (97103) v1	carwmB0671
Carg00334	MELO3C010460	Melon (DHL92) v3.5.1	carmeB0674
Carg00334	ClCG11G015600	Watermelon (Charleston Gray)	carwcgB0643
Carg00334	CSPI04G18000	Wild cucumber (PI 183967)	carcpiB0703
Carg00334	CmaCh01G013860	Cucurbita maxima (Rimu)	carcmaB0947
Carg00334	CmaCh09G008070	Cucurbita maxima (Rimu)	carcmaB0936
Carg00334	CmoCh09G008000	Cucurbita moschata (Rifu)	carcmoB0910
Carg00334	CmoCh01G014370	Cucurbita moschata (Rifu)	carcmoB0922
Carg00334	Lsi04G023770	Bottle gourd (USVL1VR-Ls)	carlsiB607
Carg00334	Cp4.1LG06g06270	Cucurbita pepo (Zucchini)	carcpeB0951
Carg00334	MELO3C010460.2	Melon (DHL92) v3.6.1	carmedB0686
Carg00334	Cla97C11G221640	Watermelon (97103) v2	carwmbB0688
Carg00334	Bhi09G002228	Wax gourd	carwgoB0787

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Carg00334	Carg17043	Silver-seed gourd	carcarB205

The following block(s) are covering this gene:


Gene	Organism	Block
Carg00334	Silver-seed gourd	carcarB568
Carg00334	Cucumber (Gy14) v2	carcgybB0663
Carg00334	Cucumber (Gy14) v1	carcgyB0742
Carg00334	Cucurbita maxima (Rimu)	carcmaB0932
Carg00334	Cucurbita maxima (Rimu)	carcmaB0941
Carg00334	Cucurbita maxima (Rimu)	carcmaB0951
Carg00334	Cucurbita moschata (Rifu)	carcmoB0915
Carg00334	Cucurbita moschata (Rifu)	carcmoB0906
Carg00334	Cucurbita moschata (Rifu)	carcmoB0926
Carg00334	Cucurbita pepo (Zucchini)	carcpeB0936
Carg00334	Cucurbita pepo (Zucchini)	carcpeB0941
Carg00334	Cucurbita pepo (Zucchini)	carcpeB0943
Carg00334	Cucurbita pepo (Zucchini)	carcpeB0947
Carg00334	Wild cucumber (PI 183967)	carcpiB0699
Carg00334	Cucumber (Chinese Long) v2	carcuB0688
Carg00334	Cucumber (Chinese Long) v3	carcucB0701
Carg00334	Bottle gourd (USVL1VR-Ls)	carlsiB609
Carg00334	Melon (DHL92) v3.5.1	carmeB0673
Carg00334	Melon (DHL92) v3.6.1	carmedB0685
Carg00334	Watermelon (Charleston Gray)	carwcgB0647
Carg00334	Watermelon (97103) v1	carwmB0672
Carg00334	Watermelon (97103) v2	carwmbB0692
Carg00334	Wax gourd	carwgoB0789