Carg16692 (gene) Silver-seed gourd

Overview
NameCarg16692
Typegene
OrganismCucurbita argyrosperma (Silver-seed gourd)
Description40S ribosomal protein S13
LocationCucurbita_argyrosperma_scaffold_064 : 628851 .. 631512 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TATAAAACGCTCTGCGAAGGCCTTCTAGGGTTTTGGTTATTCGGCCGTCGCGGAAGAGCAGCTCTTATCGAACTGAGAACTAGGGCCATCAGAGTTCCGCTGCCGTAGACGATAACCATGGGTCGTATGCACAGTCGTGGGTTTGTTTCTAATCCCCCATTTGTTTCTGATTCATTTCGATTTCATTTGTTGAATGTGGATGAAATTATTCACAACATTGACTCCATTTTTGCATTTACAGTAAGGGTATTTCTGCCTCTGCATTGCCCTACAAGAGGACGCCGCCAAGTTGGCTCAAGATCTCTTCTACTGATGTAAGTGTTTTCTTGACACTCTTATTATATGTTTGCCTGACAGTGAATGCTGCGGGAAAGTTCTGAGTCTTTTTTTTTTTTTTTTGATCTGTTGAAATTTGAATTTAGGTTGAAGATAATATCTGCAAATTTGCGAAGAAGGGCCTAACTCCTTCTCAGATTGGTGTGATTCTTCGTGATTCTCACGGTATCGCTCAAGTCAGAAGTGTTACTGGAAGTAAAATCTTGCGTATTCTTAAGGCCCATGGTATTCTTCTTTTCCATATCTTGCTTGACGTTTGCGTCTGGGATTTTTGTTTGTTTACGAGCATTCTTGTCTCTGTAGGGCTCGCACCCGAGATTCCCGAGGATCTCTATCACTTAATCAAGAAAGCTGTCTCCATCCGCAAGCATTTGGAGAGGAACAGGAAGGACAAGGACTCCAAGTTCAGATTGATTCTTGTGGAGAGCAGAATCCACAGACTTGCTCGCTACTACAAGAAAACCAAGAAGCTTCCACCAGTTTGGAAATAGTAAGTTTACTTCGTACGCTGTTTGGTTAGACTGAGAGTCATTCCACATTCCATATGATCAATCCAAAGAATGTAGTTCATGGTTATGGATTGTCTTTGATGTGGTGCTTTATTTTGAAACTATCAAATGATTAATTTAGATTCTTTTTTGTACTATAACTATTTTCGTTCTAATTTTAAACTGTCCTGCCCCGAAGCTTCTGGTATTAGGCCTGGTCTATAGTTTGGGTTCTTATTACTTTATCTAACTGATCAAGAATCATTAAACTTATATGACCAGATAAAATTTTATGTTGCAATGTGCTATGGCTCACAATCTATTACTCAAACATCTAACAAGAAGAAATAATTTGAAAGAAACAGAAAATAAGTATATTTTGTTTGTTATCCAATGGAAAGTAGTGTGGATTTGTTAGCATTTTTTTAAGAAGAATTTGGGGTTTGTTCGGCATGCCTCTCTCTGCTATGTTTAACAGAGTGAATATCAAATTTGGAAATGGATGGCCTCAAATTTTACTTGTGCAATAGGGAGTTCTGCTTATGCATGTACAAATCTTATTGACTAAATTAGGATTTAGACCTTTGTTTTCATGTGAGTTTAGTTTCTCTGAATCTGCCAACTATTTTTAATAACCAGTTGCTAATCAATCATTGCAAATGTTGTTGGCTTCAACTTTTGATGAATTTTCCCTTTAGGCCTGTGCTTTAAGTCACATGTTCACGTACCATATGAAATGAGTGGACTTCTACTCTCTCTGCTATGTTTTAAGTCACATGTTCACGTACCATTTGCAATATGTAGTTTTATTATCAAGGGCTGGATGCAATTTTCTTTTATTTGTGTTCAAGATTATAGTTAAAACGTCCAAAGCTTATTGACTAAATTAGGATTTAGACCTTTGTTTTCATCCAGCTTTAATTTTTCTGTAACTTCTTAACTTTTGGCTAGATTCAACTTTTGATGAAGATTTCCCCTCACGGGTCCATAACTGGTGTACTTTTCTTTCTTGGATTCTTTCCTTTTATGAATTGTTGGATATAGGCTTCTTAAGAAAAGTGTAGACATGGTATTTCATGATGCTTACATGTGTCCCTGATTGATTATCAACTGCTGCTTTATGACATTTGTTTTTCGTTGCAGTGAGTCAACAACTGCCAGCACCCTGGTTGCATAATTTTCAGTTAGAGTGATTGGTGGCTATATGAAACTCCATCTGTGATCGACTAAAGTCGTTGTAAGGTCAGGTGGATCAGTGAAAGTTGTGAGTTGGTTTTTATTTATGGCATCAGTTTTGACTTCTGTTTTTATTATGGAATCTGTAGCTTCGATCTGTGATCGACTTCAGTCATTTGTGAGGTCAGGTGATTTAGTGAGAGTTGTGACTTAATTTTTATTTATGACATCAATTTTGACTTCTGTTTTTATTTAGTATGGAATCTGTAGACTTATTTAGCCAGATTTTTAAAGAAAATCAGTAAACACGGTGTTGCTTAGATGGTGGATCTTTTAATAAATTTCTTGAGGCAAGTTTGAAAAAAGCTCATTGGATTTTTTCTTTTGATGTCCAATTCGATCGAAGTCATCACTCTAGCACAAGTATTCTTCTTATGGACATGCACTACTTAGATCTTTTGAGGAAACAACCGAACCCACCTATGTTAACTATCCTTTGTGAAAAATATTTTGATATTTTGTTTTTGGATTCAGAATTATATGGATTTTGTTGAAATATTCACAAAAGGGTTTTCCATGATTATAACGAAAATTATTAACGAGTTCTTGATACATAACCAATTCTGAAGTCTGCCCCATTTTGTTCTTGATGCATGACTACC

mRNA sequence

TATAAAACGCTCTGCGAAGGCCTTCTAGGGTTTTGGTTATTCGGCCGTCGCGGAAGAGCAGCTCTTATCGAACTGAGAACTAGGGCCATCAGAGTTCCGCTGCCGTAGACGATAACCATGGGTCGTATGCACAGTCGTGGTAAGGGTATTTCTGCCTCTGCATTGCCCTACAAGAGGACGCCGCCAAGTTGGCTCAAGATCTCTTCTACTGATGTTGAAGATAATATCTGCAAATTTGCGAAGAAGGGCCTAACTCCTTCTCAGATTGGTGTGATTCTTCGTGATTCTCACGGTATCGCTCAAGTCAGAAGTGTTACTGGAAGTAAAATCTTGCGTATTCTTAAGGCCCATGGGCTCGCACCCGAGATTCCCGAGGATCTCTATCACTTAATCAAGAAAGCTGTCTCCATCCGCAAGCATTTGGAGAGGAACAGGAAGGACAAGGACTCCAAGTTCAGATTGATTCTTGTGGAGAGCAGAATCCACAGACTTGCTCGCTACTACAAGAAAACCAAGAAGCTTCCACCAGTTTGGAAATATGAGTCAACAACTGCCAGCACCCTGGTTGCATAATTTTCAGTTAGAGTGATTGGTGGCTATATGAAACTCCATCTGTGATCGACTAAAGTCGTTGTAAGGTCAGGTGGATCAGTGAAAGTTGTGAGTTGGTTTTTATTTATGGCATCAGTTTTGACTTCTGTTTTTATTATGGAATCTGTAGCTTCGATCTGTGATCGACTTCAGTCATTTGTGAGGTCAGGTGATTTAGTGAGAGTTGTGACTTAATTTTTATTTATGACATCAATTTTGACTTCTGTTTTTATTTAGTATGGAATCTGTAGACTTATTTAGCCAGATTTTTAAAGAAAATCAGTAAACACGGTGTTGCTTAGATGGTGGATCTTTTAATAAATTTCTTGAGGCAAGTTTGAAAAAAGCTCATTGGATTTTTTCTTTTGATGTCCAATTCGATCGAAGTCATCACTCTAGCACAAGTATTCTTCTTATGGACATGCACTACTTAGATCTTTTGAGGAAACAACCGAACCCACCTATGTTAACTATCCTTTGTGAAAAATATTTTGATATTTTGTTTTTGGATTCAGAATTATATGGATTTTGTTGAAATATTCACAAAAGGGTTTTCCATGATTATAACGAAAATTATTAACGAGTTCTTGATACATAACCAATTCTGAAGTCTGCCCCATTTTGTTCTTGATGCATGACTACC

Coding sequence (CDS)

ATGGGTCGTATGCACAGTCGTGGTAAGGGTATTTCTGCCTCTGCATTGCCCTACAAGAGGACGCCGCCAAGTTGGCTCAAGATCTCTTCTACTGATGTTGAAGATAATATCTGCAAATTTGCGAAGAAGGGCCTAACTCCTTCTCAGATTGGTGTGATTCTTCGTGATTCTCACGGTATCGCTCAAGTCAGAAGTGTTACTGGAAGTAAAATCTTGCGTATTCTTAAGGCCCATGGGCTCGCACCCGAGATTCCCGAGGATCTCTATCACTTAATCAAGAAAGCTGTCTCCATCCGCAAGCATTTGGAGAGGAACAGGAAGGACAAGGACTCCAAGTTCAGATTGATTCTTGTGGAGAGCAGAATCCACAGACTTGCTCGCTACTACAAGAAAACCAAGAAGCTTCCACCAGTTTGGAAATATGAGTCAACAACTGCCAGCACCCTGGTTGCATAA

Protein sequence

MGRMHSRGKGISASALPYKRTPPSWLKISSTDVEDNICKFAKKGLTPSQIGVILRDSHGIAQVRSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA
Homology
[Close]
BLAST of Carg16692 vs. NCBI nr
Match: XP_022958210.1 (40S ribosomal protein S13-like [Cucurbita moschata] >XP_022922396.1 40S ribosomal protein S13-like [Cucurbita moschata] >XP_022996440.1 40S ribosomal protein S13-like [Cucurbita maxima] >XP_022970202.1 40S ribosomal protein S13-like [Cucurbita maxima] >XP_023534749.1 40S ribosomal protein S13-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 300.8 bits (769), Expect = 2.6e-78
Identity = 151/151 (100.00%), Postives = 151/151 (100.00%), Query Frame = 0 

Query: 1   MGRMHSRGKGISASALPYKRTPPSWLKISSTDVEDNICKFAKKGLTPSQIGVILRDSHGI 60
           MGRMHSRGKGISASALPYKRTPPSWLKISSTDVEDNICKFAKKGLTPSQIGVILRDSHGI
Sbjct: 1   MGRMHSRGKGISASALPYKRTPPSWLKISSTDVEDNICKFAKKGLTPSQIGVILRDSHGI 60

Query: 61  AQVRSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVES 120
           AQVRSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVES
Sbjct: 61  AQVRSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVES 120

Query: 121 RIHRLARYYKKTKKLPPVWKYESTTASTLVA 152
           RIHRLARYYKKTKKLPPVWKYESTTASTLVA
Sbjct: 121 RIHRLARYYKKTKKLPPVWKYESTTASTLVA 151

[Close]
BLAST of Carg16692 vs. NCBI nr
Match: XP_004147576.1 (PREDICTED: 40S ribosomal protein S13 [Cucumis sativus] >XP_008437146.1 PREDICTED: 40S ribosomal protein S13-like [Cucumis melo] >KGN50199.1 hypothetical protein Csa_5G158550 [Cucumis sativus])

HSP 1 Score: 298.5 bits (763), Expect = 1.3e-77
Identity = 149/151 (98.68%), Postives = 151/151 (100.00%), Query Frame = 0 

Query: 1   MGRMHSRGKGISASALPYKRTPPSWLKISSTDVEDNICKFAKKGLTPSQIGVILRDSHGI 60
           MGRMHSRGKGISASALPYKRTPPSWLKISSTDVEDNICKFAKKGLTPSQIGVILRDSHGI
Sbjct: 1   MGRMHSRGKGISASALPYKRTPPSWLKISSTDVEDNICKFAKKGLTPSQIGVILRDSHGI 60

Query: 61  AQVRSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVES 120
           AQV+SVTG+KILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVES
Sbjct: 61  AQVKSVTGNKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVES 120

Query: 121 RIHRLARYYKKTKKLPPVWKYESTTASTLVA 152
           RIHRLARYYKKTKKLPPVWKYESTTASTLVA
Sbjct: 121 RIHRLARYYKKTKKLPPVWKYESTTASTLVA 151

[Close]
BLAST of Carg16692 vs. NCBI nr
Match: XP_022157239.1 (40S ribosomal protein S13-like [Momordica charantia])

HSP 1 Score: 298.5 bits (763), Expect = 1.3e-77
Identity = 149/151 (98.68%), Postives = 151/151 (100.00%), Query Frame = 0 

Query: 1   MGRMHSRGKGISASALPYKRTPPSWLKISSTDVEDNICKFAKKGLTPSQIGVILRDSHGI 60
           MGRMHSRGKGISASALPYKRTPPSWLKISSTDV+DNICKFAKKGLTPSQIGVILRDSHGI
Sbjct: 1   MGRMHSRGKGISASALPYKRTPPSWLKISSTDVDDNICKFAKKGLTPSQIGVILRDSHGI 60

Query: 61  AQVRSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVES 120
           AQV+SVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVES
Sbjct: 61  AQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVES 120

Query: 121 RIHRLARYYKKTKKLPPVWKYESTTASTLVA 152
           RIHRLARYYKKTKKLPPVWKYESTTASTLVA
Sbjct: 121 RIHRLARYYKKTKKLPPVWKYESTTASTLVA 151

[Close]
BLAST of Carg16692 vs. NCBI nr
Match: XP_010053901.1 (PREDICTED: 40S ribosomal protein S13 [Eucalyptus grandis] >XP_022943482.1 40S ribosomal protein S13 [Cucurbita moschata] >XP_023005589.1 40S ribosomal protein S13 [Cucurbita maxima] >XP_023539007.1 40S ribosomal protein S13 [Cucurbita pepo subsp. pepo] >XP_023539008.1 40S ribosomal protein S13 [Cucurbita pepo subsp. pepo] >KCW78278.1 hypothetical protein EUGRSUZ_D02461 [Eucalyptus grandis])

HSP 1 Score: 297.0 bits (759), Expect = 3.7e-77
Identity = 149/151 (98.68%), Postives = 150/151 (99.34%), Query Frame = 0 

Query: 1   MGRMHSRGKGISASALPYKRTPPSWLKISSTDVEDNICKFAKKGLTPSQIGVILRDSHGI 60
           MGRMHSRGKGISASALPYKRTPPSWLKISS DVE+NICKFAKKGLTPSQIGVILRDSHGI
Sbjct: 1   MGRMHSRGKGISASALPYKRTPPSWLKISSQDVEENICKFAKKGLTPSQIGVILRDSHGI 60

Query: 61  AQVRSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVES 120
           AQVRSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVES
Sbjct: 61  AQVRSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVES 120

Query: 121 RIHRLARYYKKTKKLPPVWKYESTTASTLVA 152
           RIHRLARYYKKTKKLPPVWKYESTTASTLVA
Sbjct: 121 RIHRLARYYKKTKKLPPVWKYESTTASTLVA 151

[Close]
BLAST of Carg16692 vs. NCBI nr
Match: XP_006421743.1 (40S ribosomal protein S13 [Citrus clementina] >XP_006445274.1 40S ribosomal protein S13 [Citrus clementina] >XP_006490240.1 40S ribosomal protein S13 [Citrus sinensis] >XP_006490912.1 40S ribosomal protein S13 [Citrus sinensis] >XP_012489762.1 PREDICTED: 40S ribosomal protein S13 isoform X1 [Gossypium raimondii] >XP_017616110.1 PREDICTED: 40S ribosomal protein S13-like [Gossypium arboreum] >XP_021668549.1 40S ribosomal protein S13 [Hevea brasiliensis] >XP_022765760.1 40S ribosomal protein S13-like [Durio zibethinus] >ESR34983.1 hypothetical protein CICLE_v10006145mg [Citrus clementina] >ESR58514.1 hypothetical protein CICLE_v10022677mg [Citrus clementina] >KDO65399.1 hypothetical protein CISIN_1g031857mg [Citrus sinensis] >KJB41102.1 hypothetical protein B456_007G090600 [Gossypium raimondii] >PIN07142.1 40S ribosomal protein S13 [Handroanthus impetiginosus] >GAY41352.1 hypothetical protein CUMW_058810 [Citrus unshiu])

HSP 1 Score: 296.2 bits (757), Expect = 6.3e-77
Identity = 148/151 (98.01%), Postives = 150/151 (99.34%), Query Frame = 0 

Query: 1   MGRMHSRGKGISASALPYKRTPPSWLKISSTDVEDNICKFAKKGLTPSQIGVILRDSHGI 60
           MGRMHSRGKGISASALPYKRTPPSWLKISS DVEDNICKFAKKGLTPSQIGVILRDSHGI
Sbjct: 1   MGRMHSRGKGISASALPYKRTPPSWLKISSQDVEDNICKFAKKGLTPSQIGVILRDSHGI 60

Query: 61  AQVRSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVES 120
           AQV+SVTGSKILRILKAHGLAPEIPEDLYHLIKKAV+IRKHLERNRKDKDSKFRLILVES
Sbjct: 61  AQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVES 120

Query: 121 RIHRLARYYKKTKKLPPVWKYESTTASTLVA 152
           RIHRLARYYKKTKKLPPVWKYESTTASTLVA
Sbjct: 121 RIHRLARYYKKTKKLPPVWKYESTTASTLVA 151

[Close]
BLAST of Carg16692 vs. TAIR10
Match: AT4G00100.1 (ribosomal protein S13A)

HSP 1 Score: 282.0 bits (720), Expect = 2.2e-76
Identity = 140/151 (92.72%), Postives = 147/151 (97.35%), Query Frame = 0 

Query: 1   MGRMHSRGKGISASALPYKRTPPSWLKISSTDVEDNICKFAKKGLTPSQIGVILRDSHGI 60
           MGRMHSRGKGISASALPYKR+ PSWLK +S DV+++ICKFAKKGLTPSQIGVILRDSHGI
Sbjct: 1   MGRMHSRGKGISASALPYKRSSPSWLKTTSQDVDESICKFAKKGLTPSQIGVILRDSHGI 60

Query: 61  AQVRSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVES 120
            QV+SVTGSKILRILKAHGLAPEIPEDLYHLIKKAV+IRKHLERNRKDKDSKFRLILVES
Sbjct: 61  PQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVES 120

Query: 121 RIHRLARYYKKTKKLPPVWKYESTTASTLVA 152
           RIHRLARYYKKTKKLPPVWKYESTTASTLVA
Sbjct: 121 RIHRLARYYKKTKKLPPVWKYESTTASTLVA 151

[Close]
BLAST of Carg16692 vs. TAIR10
Match: AT3G60770.1 (Ribosomal protein S13/S15)

HSP 1 Score: 280.0 bits (715), Expect = 8.5e-76
Identity = 139/151 (92.05%), Postives = 146/151 (96.69%), Query Frame = 0 

Query: 1   MGRMHSRGKGISASALPYKRTPPSWLKISSTDVEDNICKFAKKGLTPSQIGVILRDSHGI 60
           MGRMHSRGKGISASALPYKR+ PSWLK +  DV+++ICKFAKKGLTPSQIGVILRDSHGI
Sbjct: 1   MGRMHSRGKGISASALPYKRSSPSWLKTTPQDVDESICKFAKKGLTPSQIGVILRDSHGI 60

Query: 61  AQVRSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVES 120
            QV+SVTGSKILRILKAHGLAPEIPEDLYHLIKKAV+IRKHLERNRKDKDSKFRLILVES
Sbjct: 61  PQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVES 120

Query: 121 RIHRLARYYKKTKKLPPVWKYESTTASTLVA 152
           RIHRLARYYKKTKKLPPVWKYESTTASTLVA
Sbjct: 121 RIHRLARYYKKTKKLPPVWKYESTTASTLVA 151

[Close]
BLAST of Carg16692 vs. Swiss-Prot
Match: sp|P62302|RS13_SOYBN (40S ribosomal protein S13 OS=Glycine max OX=3847 GN=RPS13 PE=2 SV=1)

HSP 1 Score: 293.9 bits (751), Expect = 1.0e-78
Identity = 147/151 (97.35%), Postives = 149/151 (98.68%), Query Frame = 0 

Query: 1   MGRMHSRGKGISASALPYKRTPPSWLKISSTDVEDNICKFAKKGLTPSQIGVILRDSHGI 60
           MGRMHSRGKGIS+SALPYKRTPPSWLKISS DVE+NICKFAKKGLTPSQIGVILRDSHGI
Sbjct: 1   MGRMHSRGKGISSSALPYKRTPPSWLKISSQDVEENICKFAKKGLTPSQIGVILRDSHGI 60

Query: 61  AQVRSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVES 120
           AQV SVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVES
Sbjct: 61  AQVNSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVES 120

Query: 121 RIHRLARYYKKTKKLPPVWKYESTTASTLVA 152
           RIHRLARYYKKTKKLPPVWKYESTTASTLVA
Sbjct: 121 RIHRLARYYKKTKKLPPVWKYESTTASTLVA 151

[Close]
BLAST of Carg16692 vs. Swiss-Prot
Match: sp|P59224|RS132_ARATH (40S ribosomal protein S13-2 OS=Arabidopsis thaliana OX=3702 GN=RPS13B PE=2 SV=1)

HSP 1 Score: 282.0 bits (720), Expect = 4.0e-75
Identity = 140/151 (92.72%), Postives = 147/151 (97.35%), Query Frame = 0 

Query: 1   MGRMHSRGKGISASALPYKRTPPSWLKISSTDVEDNICKFAKKGLTPSQIGVILRDSHGI 60
           MGRMHSRGKGISASALPYKR+ PSWLK +S DV+++ICKFAKKGLTPSQIGVILRDSHGI
Sbjct: 1   MGRMHSRGKGISASALPYKRSSPSWLKTTSQDVDESICKFAKKGLTPSQIGVILRDSHGI 60

Query: 61  AQVRSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVES 120
            QV+SVTGSKILRILKAHGLAPEIPEDLYHLIKKAV+IRKHLERNRKDKDSKFRLILVES
Sbjct: 61  PQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVES 120

Query: 121 RIHRLARYYKKTKKLPPVWKYESTTASTLVA 152
           RIHRLARYYKKTKKLPPVWKYESTTASTLVA
Sbjct: 121 RIHRLARYYKKTKKLPPVWKYESTTASTLVA 151

[Close]
BLAST of Carg16692 vs. Swiss-Prot
Match: sp|P46298|RS13_PEA (40S ribosomal protein S13 OS=Pisum sativum OX=3888 GN=RPS13 PE=2 SV=1)

HSP 1 Score: 281.2 bits (718), Expect = 6.9e-75
Identity = 140/151 (92.72%), Postives = 147/151 (97.35%), Query Frame = 0 

Query: 1   MGRMHSRGKGISASALPYKRTPPSWLKISSTDVEDNICKFAKKGLTPSQIGVILRDSHGI 60
           MGR+HS+GKGIS+SALPY+RT PSWLKISS DV++ ICKFAKKGLTPSQIGVILRDSHGI
Sbjct: 1   MGRLHSKGKGISSSALPYRRTAPSWLKISSQDVDETICKFAKKGLTPSQIGVILRDSHGI 60

Query: 61  AQVRSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVES 120
           AQV+SVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLER RKDKDSKFRLILVES
Sbjct: 61  AQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERFRKDKDSKFRLILVES 120

Query: 121 RIHRLARYYKKTKKLPPVWKYESTTASTLVA 152
           RIHRLARYYKKTKKLPPVWKYESTTASTLVA
Sbjct: 121 RIHRLARYYKKTKKLPPVWKYESTTASTLVA 151

[Close]
BLAST of Carg16692 vs. Swiss-Prot
Match: sp|P59223|RS131_ARATH (40S ribosomal protein S13-1 OS=Arabidopsis thaliana OX=3702 GN=RPS13A PE=2 SV=1)

HSP 1 Score: 280.0 bits (715), Expect = 1.5e-74
Identity = 139/151 (92.05%), Postives = 146/151 (96.69%), Query Frame = 0 

Query: 1   MGRMHSRGKGISASALPYKRTPPSWLKISSTDVEDNICKFAKKGLTPSQIGVILRDSHGI 60
           MGRMHSRGKGISASALPYKR+ PSWLK +  DV+++ICKFAKKGLTPSQIGVILRDSHGI
Sbjct: 1   MGRMHSRGKGISASALPYKRSSPSWLKTTPQDVDESICKFAKKGLTPSQIGVILRDSHGI 60

Query: 61  AQVRSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVES 120
            QV+SVTGSKILRILKAHGLAPEIPEDLYHLIKKAV+IRKHLERNRKDKDSKFRLILVES
Sbjct: 61  PQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVES 120

Query: 121 RIHRLARYYKKTKKLPPVWKYESTTASTLVA 152
           RIHRLARYYKKTKKLPPVWKYESTTASTLVA
Sbjct: 121 RIHRLARYYKKTKKLPPVWKYESTTASTLVA 151

[Close]
BLAST of Carg16692 vs. Swiss-Prot
Match: sp|Q69UI1|RS132_ORYSJ (40S ribosomal protein S13-2 OS=Oryza sativa subsp. japonica OX=39947 GN=Os08g0117300 PE=1 SV=1)

HSP 1 Score: 262.7 bits (670), Expect = 2.5e-69
Identity = 131/151 (86.75%), Postives = 140/151 (92.72%), Query Frame = 0 

Query: 1   MGRMHSRGKGISASALPYKRTPPSWLKISSTDVEDNICKFAKKGLTPSQIGVILRDSHGI 60
           MGRMHSRGKGIS+SALPYKRTPPSWLK +++DVE+ I K AKKG  PSQIGV+LRD HGI
Sbjct: 1   MGRMHSRGKGISSSALPYKRTPPSWLKTAASDVEEMIMKAAKKGQMPSQIGVVLRDQHGI 60

Query: 61  AQVRSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVES 120
             V+SVTGSKILRILKAHGLAPEIPEDLY LIKKAV+IRKHLERNRKDKDSKFRLILVES
Sbjct: 61  PLVKSVTGSKILRILKAHGLAPEIPEDLYFLIKKAVAIRKHLERNRKDKDSKFRLILVES 120

Query: 121 RIHRLARYYKKTKKLPPVWKYESTTASTLVA 152
           RIHRLARYYK+TKKLPP WKYESTTASTLVA
Sbjct: 121 RIHRLARYYKRTKKLPPTWKYESTTASTLVA 151

[Close]
BLAST of Carg16692 vs. TrEMBL
Match: tr|A0A1S3ATA6|A0A1S3ATA6_CUCME (40S ribosomal protein S13-like OS=Cucumis melo OX=3656 GN=LOC103482656 PE=3 SV=1)

HSP 1 Score: 298.5 bits (763), Expect = 8.4e-78
Identity = 149/151 (98.68%), Postives = 151/151 (100.00%), Query Frame = 0 

Query: 1   MGRMHSRGKGISASALPYKRTPPSWLKISSTDVEDNICKFAKKGLTPSQIGVILRDSHGI 60
           MGRMHSRGKGISASALPYKRTPPSWLKISSTDVEDNICKFAKKGLTPSQIGVILRDSHGI
Sbjct: 1   MGRMHSRGKGISASALPYKRTPPSWLKISSTDVEDNICKFAKKGLTPSQIGVILRDSHGI 60

Query: 61  AQVRSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVES 120
           AQV+SVTG+KILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVES
Sbjct: 61  AQVKSVTGNKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVES 120

Query: 121 RIHRLARYYKKTKKLPPVWKYESTTASTLVA 152
           RIHRLARYYKKTKKLPPVWKYESTTASTLVA
Sbjct: 121 RIHRLARYYKKTKKLPPVWKYESTTASTLVA 151

[Close]
BLAST of Carg16692 vs. TrEMBL
Match: tr|A0A0A0KMS8|A0A0A0KMS8_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G158550 PE=3 SV=1)

HSP 1 Score: 298.5 bits (763), Expect = 8.4e-78
Identity = 149/151 (98.68%), Postives = 151/151 (100.00%), Query Frame = 0 

Query: 1   MGRMHSRGKGISASALPYKRTPPSWLKISSTDVEDNICKFAKKGLTPSQIGVILRDSHGI 60
           MGRMHSRGKGISASALPYKRTPPSWLKISSTDVEDNICKFAKKGLTPSQIGVILRDSHGI
Sbjct: 1   MGRMHSRGKGISASALPYKRTPPSWLKISSTDVEDNICKFAKKGLTPSQIGVILRDSHGI 60

Query: 61  AQVRSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVES 120
           AQV+SVTG+KILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVES
Sbjct: 61  AQVKSVTGNKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVES 120

Query: 121 RIHRLARYYKKTKKLPPVWKYESTTASTLVA 152
           RIHRLARYYKKTKKLPPVWKYESTTASTLVA
Sbjct: 121 RIHRLARYYKKTKKLPPVWKYESTTASTLVA 151

[Close]
BLAST of Carg16692 vs. TrEMBL
Match: tr|A0A059CIJ2|A0A059CIJ2_EUCGR (Uncharacterized protein OS=Eucalyptus grandis OX=71139 GN=EUGRSUZ_D02461 PE=3 SV=1)

HSP 1 Score: 297.0 bits (759), Expect = 2.4e-77
Identity = 149/151 (98.68%), Postives = 150/151 (99.34%), Query Frame = 0 

Query: 1   MGRMHSRGKGISASALPYKRTPPSWLKISSTDVEDNICKFAKKGLTPSQIGVILRDSHGI 60
           MGRMHSRGKGISASALPYKRTPPSWLKISS DVE+NICKFAKKGLTPSQIGVILRDSHGI
Sbjct: 1   MGRMHSRGKGISASALPYKRTPPSWLKISSQDVEENICKFAKKGLTPSQIGVILRDSHGI 60

Query: 61  AQVRSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVES 120
           AQVRSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVES
Sbjct: 61  AQVRSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVES 120

Query: 121 RIHRLARYYKKTKKLPPVWKYESTTASTLVA 152
           RIHRLARYYKKTKKLPPVWKYESTTASTLVA
Sbjct: 121 RIHRLARYYKKTKKLPPVWKYESTTASTLVA 151

[Close]
BLAST of Carg16692 vs. TrEMBL
Match: tr|V4RLB2|V4RLB2_9ROSI (Uncharacterized protein OS=Citrus clementina OX=85681 GN=CICLE_v10006145mg PE=3 SV=1)

HSP 1 Score: 296.2 bits (757), Expect = 4.2e-77
Identity = 148/151 (98.01%), Postives = 150/151 (99.34%), Query Frame = 0 

Query: 1   MGRMHSRGKGISASALPYKRTPPSWLKISSTDVEDNICKFAKKGLTPSQIGVILRDSHGI 60
           MGRMHSRGKGISASALPYKRTPPSWLKISS DVEDNICKFAKKGLTPSQIGVILRDSHGI
Sbjct: 1   MGRMHSRGKGISASALPYKRTPPSWLKISSQDVEDNICKFAKKGLTPSQIGVILRDSHGI 60

Query: 61  AQVRSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVES 120
           AQV+SVTGSKILRILKAHGLAPEIPEDLYHLIKKAV+IRKHLERNRKDKDSKFRLILVES
Sbjct: 61  AQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVES 120

Query: 121 RIHRLARYYKKTKKLPPVWKYESTTASTLVA 152
           RIHRLARYYKKTKKLPPVWKYESTTASTLVA
Sbjct: 121 RIHRLARYYKKTKKLPPVWKYESTTASTLVA 151

[Close]
BLAST of Carg16692 vs. TrEMBL
Match: tr|A0A2H5NMM4|A0A2H5NMM4_CITUN (Uncharacterized protein OS=Citrus unshiu OX=55188 GN=CUMW_058810 PE=3 SV=1)

HSP 1 Score: 296.2 bits (757), Expect = 4.2e-77
Identity = 148/151 (98.01%), Postives = 150/151 (99.34%), Query Frame = 0 

Query: 1   MGRMHSRGKGISASALPYKRTPPSWLKISSTDVEDNICKFAKKGLTPSQIGVILRDSHGI 60
           MGRMHSRGKGISASALPYKRTPPSWLKISS DVEDNICKFAKKGLTPSQIGVILRDSHGI
Sbjct: 1   MGRMHSRGKGISASALPYKRTPPSWLKISSQDVEDNICKFAKKGLTPSQIGVILRDSHGI 60

Query: 61  AQVRSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVES 120
           AQV+SVTGSKILRILKAHGLAPEIPEDLYHLIKKAV+IRKHLERNRKDKDSKFRLILVES
Sbjct: 61  AQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVES 120

Query: 121 RIHRLARYYKKTKKLPPVWKYESTTASTLVA 152
           RIHRLARYYKKTKKLPPVWKYESTTASTLVA
Sbjct: 121 RIHRLARYYKKTKKLPPVWKYESTTASTLVA 151

The following BLAST results are available for this feature:
BLAST of Carg16692 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022958210.12.6e-78100.0040S ribosomal protein S13-like [Cucurbita moschata] >XP_022922396.1 40S ribosoma... [more]
XP_004147576.11.3e-7798.68PREDICTED: 40S ribosomal protein S13 [Cucumis sativus] >XP_008437146.1 PREDICTED... [more]
XP_022157239.11.3e-7798.6840S ribosomal protein S13-like [Momordica charantia][more]
XP_010053901.13.7e-7798.68PREDICTED: 40S ribosomal protein S13 [Eucalyptus grandis] >XP_022943482.1 40S ri... [more]
XP_006421743.16.3e-7798.0140S ribosomal protein S13 [Citrus clementina] >XP_006445274.1 40S ribosomal prot... [more]
BLAST of Carg16692 vs. TAIR10
Match NameE-valueIdentityDescription
AT4G00100.12.2e-7692.72ribosomal protein S13A[more]
AT3G60770.18.5e-7692.05Ribosomal protein S13/S15[more]
BLAST of Carg16692 vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|P62302|RS13_SOYBN1.0e-7897.3540S ribosomal protein S13 OS=Glycine max OX=3847 GN=RPS13 PE=2 SV=1[more]
sp|P59224|RS132_ARATH4.0e-7592.7240S ribosomal protein S13-2 OS=Arabidopsis thaliana OX=3702 GN=RPS13B PE=2 SV=1[more]
sp|P46298|RS13_PEA6.9e-7592.7240S ribosomal protein S13 OS=Pisum sativum OX=3888 GN=RPS13 PE=2 SV=1[more]
sp|P59223|RS131_ARATH1.5e-7492.0540S ribosomal protein S13-1 OS=Arabidopsis thaliana OX=3702 GN=RPS13A PE=2 SV=1[more]
sp|Q69UI1|RS132_ORYSJ2.5e-6986.7540S ribosomal protein S13-2 OS=Oryza sativa subsp. japonica OX=39947 GN=Os08g011... [more]
BLAST of Carg16692 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A1S3ATA6|A0A1S3ATA6_CUCME8.4e-7898.6840S ribosomal protein S13-like OS=Cucumis melo OX=3656 GN=LOC103482656 PE=3 SV=1[more]
tr|A0A0A0KMS8|A0A0A0KMS8_CUCSA8.4e-7898.68Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G158550 PE=3 SV=1[more]
tr|A0A059CIJ2|A0A059CIJ2_EUCGR2.4e-7798.68Uncharacterized protein OS=Eucalyptus grandis OX=71139 GN=EUGRSUZ_D02461 PE=3 SV... [more]
tr|V4RLB2|V4RLB2_9ROSI4.2e-7798.01Uncharacterized protein OS=Citrus clementina OX=85681 GN=CICLE_v10006145mg PE=3 ... [more]
tr|A0A2H5NMM4|A0A2H5NMM4_CITUN4.2e-7798.01Uncharacterized protein OS=Citrus unshiu OX=55188 GN=CUMW_058810 PE=3 SV=1[more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0003735structural constituent of ribosome
Vocabulary: Cellular Component
TermDefinition
GO:0005622intracellular
GO:0005840ribosome
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
Vocabulary: INTERPRO
TermDefinition
IPR009068S15_NS1_RNA-bd
IPR023029Ribosomal_S15P
IPR012606Ribosomal_S13/S15_N
IPR000589Ribosomal_S15
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0042254 ribosome biogenesis
biological_process GO:0006412 translation
cellular_component GO:0005840 ribosome
cellular_component GO:0005622 intracellular
molecular_function GO:0003735 structural constituent of ribosome
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg16692-RACarg16692-RAmRNA


InterPro
Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000589Ribosomal protein S15SMARTSM01387Ribosomal_S15_2coord: 70..149
e-value: 2.9E-15
score: 66.7
IPR000589Ribosomal protein S15PFAMPF00312Ribosomal_S15coord: 74..146
e-value: 9.9E-16
score: 57.6
IPR000589Ribosomal protein S15PROSITEPS00362RIBOSOMAL_S15coord: 98..128
IPR000589Ribosomal protein S15CDDcd00353Ribosomal_S15p_S13ecoord: 70..143
e-value: 5.5712E-26
score: 94.4922
IPR012606Ribosomal protein S13/S15, N-terminalSMARTSM01386Ribosomal_S13_N_2coord: 1..60
e-value: 9.1E-40
score: 148.1
IPR012606Ribosomal protein S13/S15, N-terminalPFAMPF08069Ribosomal_S13_Ncoord: 1..60
e-value: 3.5E-32
score: 110.1
NoneNo IPR availableGENE3DG3DSA:1.10.287.10coord: 83..151
e-value: 4.3E-38
score: 131.1
NoneNo IPR availableGENE3DG3DSA:1.10.8.1030coord: 35..82
e-value: 2.4E-29
score: 102.8
NoneNo IPR availablePANTHERPTHR11885:SF7SUBFAMILY NOT NAMEDcoord: 1..151
IPR023029Ribosomal protein S15PPANTHERPTHR11885RIBOSOMAL PROTEIN S15P/S13Ecoord: 1..151
IPR023029Ribosomal protein S15PHAMAPMF_01343_ARibosomal_S15_Acoord: 3..149
score: 31.938
IPR009068S15/NS1, RNA-bindingSUPERFAMILYSSF47060S15/NS1 RNA-binding domaincoord: 66..142

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Carg16692Cla011539Watermelon (97103) v1carwmB0938
Carg16692Csa5G158550Cucumber (Chinese Long) v2carcuB0954
Carg16692Csa3G035890Cucumber (Chinese Long) v2carcuB0953
Carg16692MELO3C005580Melon (DHL92) v3.5.1carmeB0920
Carg16692MELO3C013981Melon (DHL92) v3.5.1carmeB0921
Carg16692ClCG01G003650Watermelon (Charleston Gray)carwcgB0912
Carg16692CSPI05G06350Wild cucumber (PI 183967)carcpiB0977
Carg16692CSPI03G03120Wild cucumber (PI 183967)carcpiB0975
Carg16692Cucsa.320490Cucumber (Gy14) v1carcgyB1055
Carg16692Cucsa.302270Cucumber (Gy14) v1carcgyB1054
Carg16692CmaCh06G007570Cucurbita maxima (Rimu)carcmaB1285
Carg16692CmaCh02G014990Cucurbita maxima (Rimu)carcmaB1283
Carg16692CmaCh15G011630Cucurbita maxima (Rimu)carcmaB1281
Carg16692CmoCh02G015400Cucurbita moschata (Rifu)carcmoB1254
Carg16692CmoCh15G012250Cucurbita moschata (Rifu)carcmoB1252
Carg16692CmoCh06G007790Cucurbita moschata (Rifu)carcmoB1256
Carg16692Lsi09G003770Bottle gourd (USVL1VR-Ls)carlsiB851
Carg16692Cp4.1LG08g07550Cucurbita pepo (Zucchini)carcpeB1299
Carg16692Cp4.1LG05g03700Cucurbita pepo (Zucchini)carcpeB1298
Carg16692Cp4.1LG13g02100Cucurbita pepo (Zucchini)carcpeB1295
Carg16692CsGy3G003050Cucumber (Gy14) v2carcgybB0925
Carg16692CsGy5G003660Cucumber (Gy14) v2carcgybB0927
Carg16692MELO3C005580.2Melon (DHL92) v3.6.1carmedB0927
Carg16692CsaV3_5G003770Cucumber (Chinese Long) v3carcucB0979
Carg16692CsaV3_3G003150Cucumber (Chinese Long) v3carcucB0977
Carg16692Cla97C01G003740Watermelon (97103) v2carwmbB0980
Carg16692Cla97C10G187650Watermelon (97103) v2carwmbB0981
Carg16692Cla97C06G109710Watermelon (97103) v2carwmbB0985
Carg16692Bhi12G000352Wax gourdcarwgoB1080
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
Carg16692Carg25273Silver-seed gourdcarcarB634
Carg16692Carg21606Silver-seed gourdcarcarB636
Carg16692Carg02486Silver-seed gourdcarcarB643
The following block(s) are covering this gene:
GeneOrganismBlock
Carg16692Silver-seed gourdcarcarB642
Carg16692Cucurbita pepo (Zucchini)carcpeB1297