Carg02486 (gene) Silver-seed gourd

Overview
NameCarg02486
Typegene
OrganismCucurbita argyrosperma (Silver-seed gourd)
Description40S ribosomal protein S13
LocationCucurbita_argyrosperma_scaffold_009 : 223947 .. 224724 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGTCGTATGCACAGTCGAGGGTTCGTTTCTAATCTCCGATTTGCTTCCGTTTCATTTCTACTTTAGCTGTTGGTTTCATTAGTTGAATCTGGTCCGTATTGTTCCCAACATTGACTGCATTTTCTCCATTTTGCAGTAAGGGTATTTCCGCCTCTGCATTGCCCTACAAGAGGACGCCGCCAAGTTGGCTCAAGATCTCTTCCACGGATGTAAGTATTTTATTGACTACCTCCACTGTTAAACTGATGGGGAATACTTCCTGGAAGTTCTGAGCTTGGAGGGCTGCTTTTCAGGATTTTGTTATTCCTTCAGCAATATTCTGTTTGTTATCGTTCTTATTGAATTTAAATTTAGGTGGAAGATAATATCTGCAAGTTTGCGAAGAAGGGTTTAACCCCTTCTCAGATTGGTGTCATTCTTCGTGATTCTCACGGCATAGCTCAAGTCAGAAGTGTTACTGGAAGCAAAATCTTGCGTATTCTTAAAGCCCATGGTATTCTTCTTATCCATCTCTTGCGCATTTCGATTTTTCTGTTAAGTTGTTTACGAGCATTTTTGACACTTGAGTTTGTGGTTGTACTATTTAGGGCTGGCACCCGAGATTCCTGAGGATCTTTATCACTTAATCAAGAAGGCAGTTTCCATCCGTAAGCATTTGGAGAGGAACAGGAAGGACAAGGATTCCAAGTTCAGATTGATTCTTGTTGAGAGCAGAATTCACAGGCTTGCTCGTTACTACAAGAAGACCAAGAAGCTTCCACCAGTTTGGAAATAG

mRNA sequence

ATGGGTCGTATGCACAGTCGAGGTAAGGGTATTTCCGCCTCTGCATTGCCCTACAAGAGGACGCCGCCAAGTTGGCTCAAGATCTCTTCCACGGATGTGGAAGATAATATCTGCAAGTTTGCGAAGAAGGGTTTAACCCCTTCTCAGATTGGTGTCATTCTTCGTGATTCTCACGGCATAGCTCAAGTCAGAAGTGTTACTGGAAGCAAAATCTTGCGTATTCTTAAAGCCCATGGGCTGGCACCCGAGATTCCTGAGGATCTTTATCACTTAATCAAGAAGGCAGTTTCCATCCGTAAGCATTTGGAGAGGAACAGGAAGGACAAGGATTCCAAGTTCAGATTGATTCTTGTTGAGAGCAGAATTCACAGGCTTGCTCGTTACTACAAGAAGACCAAGAAGCTTCCACCAGTTTGGAAATAG

Coding sequence (CDS)

ATGGGTCGTATGCACAGTCGAGGTAAGGGTATTTCCGCCTCTGCATTGCCCTACAAGAGGACGCCGCCAAGTTGGCTCAAGATCTCTTCCACGGATGTGGAAGATAATATCTGCAAGTTTGCGAAGAAGGGTTTAACCCCTTCTCAGATTGGTGTCATTCTTCGTGATTCTCACGGCATAGCTCAAGTCAGAAGTGTTACTGGAAGCAAAATCTTGCGTATTCTTAAAGCCCATGGGCTGGCACCCGAGATTCCTGAGGATCTTTATCACTTAATCAAGAAGGCAGTTTCCATCCGTAAGCATTTGGAGAGGAACAGGAAGGACAAGGATTCCAAGTTCAGATTGATTCTTGTTGAGAGCAGAATTCACAGGCTTGCTCGTTACTACAAGAAGACCAAGAAGCTTCCACCAGTTTGGAAATAG

Protein sequence

MGRMHSRGKGISASALPYKRTPPSWLKISSTDVEDNICKFAKKGLTPSQIGVILRDSHGIAQVRSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWK
Homology
[Close]
BLAST of Carg02486 vs. NCBI nr
Match: XP_022958210.1 (40S ribosomal protein S13-like [Cucurbita moschata] >XP_022922396.1 40S ribosomal protein S13-like [Cucurbita moschata] >XP_022996440.1 40S ribosomal protein S13-like [Cucurbita maxima] >XP_022970202.1 40S ribosomal protein S13-like [Cucurbita maxima] >XP_023534749.1 40S ribosomal protein S13-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 281.2 bits (718), Expect = 1.9e-72
Identity = 140/140 (100.00%), Postives = 140/140 (100.00%), Query Frame = 0 

Query: 1   MGRMHSRGKGISASALPYKRTPPSWLKISSTDVEDNICKFAKKGLTPSQIGVILRDSHGI 60
           MGRMHSRGKGISASALPYKRTPPSWLKISSTDVEDNICKFAKKGLTPSQIGVILRDSHGI
Sbjct: 1   MGRMHSRGKGISASALPYKRTPPSWLKISSTDVEDNICKFAKKGLTPSQIGVILRDSHGI 60

Query: 61  AQVRSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVES 120
           AQVRSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVES
Sbjct: 61  AQVRSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVES 120

Query: 121 RIHRLARYYKKTKKLPPVWK 141
           RIHRLARYYKKTKKLPPVWK
Sbjct: 121 RIHRLARYYKKTKKLPPVWK 140

[Close]
BLAST of Carg02486 vs. NCBI nr
Match: XP_004147576.1 (PREDICTED: 40S ribosomal protein S13 [Cucumis sativus] >XP_008437146.1 PREDICTED: 40S ribosomal protein S13-like [Cucumis melo] >KGN50199.1 hypothetical protein Csa_5G158550 [Cucumis sativus])

HSP 1 Score: 278.9 bits (712), Expect = 9.7e-72
Identity = 138/140 (98.57%), Postives = 140/140 (100.00%), Query Frame = 0 

Query: 1   MGRMHSRGKGISASALPYKRTPPSWLKISSTDVEDNICKFAKKGLTPSQIGVILRDSHGI 60
           MGRMHSRGKGISASALPYKRTPPSWLKISSTDVEDNICKFAKKGLTPSQIGVILRDSHGI
Sbjct: 1   MGRMHSRGKGISASALPYKRTPPSWLKISSTDVEDNICKFAKKGLTPSQIGVILRDSHGI 60

Query: 61  AQVRSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVES 120
           AQV+SVTG+KILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVES
Sbjct: 61  AQVKSVTGNKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVES 120

Query: 121 RIHRLARYYKKTKKLPPVWK 141
           RIHRLARYYKKTKKLPPVWK
Sbjct: 121 RIHRLARYYKKTKKLPPVWK 140

[Close]
BLAST of Carg02486 vs. NCBI nr
Match: XP_022157239.1 (40S ribosomal protein S13-like [Momordica charantia])

HSP 1 Score: 278.9 bits (712), Expect = 9.7e-72
Identity = 138/140 (98.57%), Postives = 140/140 (100.00%), Query Frame = 0 

Query: 1   MGRMHSRGKGISASALPYKRTPPSWLKISSTDVEDNICKFAKKGLTPSQIGVILRDSHGI 60
           MGRMHSRGKGISASALPYKRTPPSWLKISSTDV+DNICKFAKKGLTPSQIGVILRDSHGI
Sbjct: 1   MGRMHSRGKGISASALPYKRTPPSWLKISSTDVDDNICKFAKKGLTPSQIGVILRDSHGI 60

Query: 61  AQVRSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVES 120
           AQV+SVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVES
Sbjct: 61  AQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVES 120

Query: 121 RIHRLARYYKKTKKLPPVWK 141
           RIHRLARYYKKTKKLPPVWK
Sbjct: 121 RIHRLARYYKKTKKLPPVWK 140

[Close]
BLAST of Carg02486 vs. NCBI nr
Match: XP_010053901.1 (PREDICTED: 40S ribosomal protein S13 [Eucalyptus grandis] >XP_022943482.1 40S ribosomal protein S13 [Cucurbita moschata] >XP_023005589.1 40S ribosomal protein S13 [Cucurbita maxima] >XP_023539007.1 40S ribosomal protein S13 [Cucurbita pepo subsp. pepo] >XP_023539008.1 40S ribosomal protein S13 [Cucurbita pepo subsp. pepo] >KCW78278.1 hypothetical protein EUGRSUZ_D02461 [Eucalyptus grandis])

HSP 1 Score: 277.3 bits (708), Expect = 2.8e-71
Identity = 138/140 (98.57%), Postives = 139/140 (99.29%), Query Frame = 0 

Query: 1   MGRMHSRGKGISASALPYKRTPPSWLKISSTDVEDNICKFAKKGLTPSQIGVILRDSHGI 60
           MGRMHSRGKGISASALPYKRTPPSWLKISS DVE+NICKFAKKGLTPSQIGVILRDSHGI
Sbjct: 1   MGRMHSRGKGISASALPYKRTPPSWLKISSQDVEENICKFAKKGLTPSQIGVILRDSHGI 60

Query: 61  AQVRSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVES 120
           AQVRSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVES
Sbjct: 61  AQVRSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVES 120

Query: 121 RIHRLARYYKKTKKLPPVWK 141
           RIHRLARYYKKTKKLPPVWK
Sbjct: 121 RIHRLARYYKKTKKLPPVWK 140

[Close]
BLAST of Carg02486 vs. NCBI nr
Match: XP_006421743.1 (40S ribosomal protein S13 [Citrus clementina] >XP_006445274.1 40S ribosomal protein S13 [Citrus clementina] >XP_006490240.1 40S ribosomal protein S13 [Citrus sinensis] >XP_006490912.1 40S ribosomal protein S13 [Citrus sinensis] >XP_012489762.1 PREDICTED: 40S ribosomal protein S13 isoform X1 [Gossypium raimondii] >XP_017616110.1 PREDICTED: 40S ribosomal protein S13-like [Gossypium arboreum] >XP_021668549.1 40S ribosomal protein S13 [Hevea brasiliensis] >XP_022765760.1 40S ribosomal protein S13-like [Durio zibethinus] >ESR34983.1 hypothetical protein CICLE_v10006145mg [Citrus clementina] >ESR58514.1 hypothetical protein CICLE_v10022677mg [Citrus clementina] >KDO65399.1 hypothetical protein CISIN_1g031857mg [Citrus sinensis] >KJB41102.1 hypothetical protein B456_007G090600 [Gossypium raimondii] >PIN07142.1 40S ribosomal protein S13 [Handroanthus impetiginosus] >GAY41352.1 hypothetical protein CUMW_058810 [Citrus unshiu])

HSP 1 Score: 276.6 bits (706), Expect = 4.8e-71
Identity = 137/140 (97.86%), Postives = 139/140 (99.29%), Query Frame = 0 

Query: 1   MGRMHSRGKGISASALPYKRTPPSWLKISSTDVEDNICKFAKKGLTPSQIGVILRDSHGI 60
           MGRMHSRGKGISASALPYKRTPPSWLKISS DVEDNICKFAKKGLTPSQIGVILRDSHGI
Sbjct: 1   MGRMHSRGKGISASALPYKRTPPSWLKISSQDVEDNICKFAKKGLTPSQIGVILRDSHGI 60

Query: 61  AQVRSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVES 120
           AQV+SVTGSKILRILKAHGLAPEIPEDLYHLIKKAV+IRKHLERNRKDKDSKFRLILVES
Sbjct: 61  AQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVES 120

Query: 121 RIHRLARYYKKTKKLPPVWK 141
           RIHRLARYYKKTKKLPPVWK
Sbjct: 121 RIHRLARYYKKTKKLPPVWK 140

[Close]
BLAST of Carg02486 vs. TAIR10
Match: AT4G00100.1 (ribosomal protein S13A)

HSP 1 Score: 262.3 bits (669), Expect = 1.7e-70
Identity = 129/140 (92.14%), Postives = 136/140 (97.14%), Query Frame = 0 

Query: 1   MGRMHSRGKGISASALPYKRTPPSWLKISSTDVEDNICKFAKKGLTPSQIGVILRDSHGI 60
           MGRMHSRGKGISASALPYKR+ PSWLK +S DV+++ICKFAKKGLTPSQIGVILRDSHGI
Sbjct: 1   MGRMHSRGKGISASALPYKRSSPSWLKTTSQDVDESICKFAKKGLTPSQIGVILRDSHGI 60

Query: 61  AQVRSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVES 120
            QV+SVTGSKILRILKAHGLAPEIPEDLYHLIKKAV+IRKHLERNRKDKDSKFRLILVES
Sbjct: 61  PQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVES 120

Query: 121 RIHRLARYYKKTKKLPPVWK 141
           RIHRLARYYKKTKKLPPVWK
Sbjct: 121 RIHRLARYYKKTKKLPPVWK 140

[Close]
BLAST of Carg02486 vs. TAIR10
Match: AT3G60770.1 (Ribosomal protein S13/S15)

HSP 1 Score: 260.4 bits (664), Expect = 6.4e-70
Identity = 128/140 (91.43%), Postives = 135/140 (96.43%), Query Frame = 0 

Query: 1   MGRMHSRGKGISASALPYKRTPPSWLKISSTDVEDNICKFAKKGLTPSQIGVILRDSHGI 60
           MGRMHSRGKGISASALPYKR+ PSWLK +  DV+++ICKFAKKGLTPSQIGVILRDSHGI
Sbjct: 1   MGRMHSRGKGISASALPYKRSSPSWLKTTPQDVDESICKFAKKGLTPSQIGVILRDSHGI 60

Query: 61  AQVRSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVES 120
            QV+SVTGSKILRILKAHGLAPEIPEDLYHLIKKAV+IRKHLERNRKDKDSKFRLILVES
Sbjct: 61  PQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVES 120

Query: 121 RIHRLARYYKKTKKLPPVWK 141
           RIHRLARYYKKTKKLPPVWK
Sbjct: 121 RIHRLARYYKKTKKLPPVWK 140

[Close]
BLAST of Carg02486 vs. Swiss-Prot
Match: sp|P62302|RS13_SOYBN (40S ribosomal protein S13 OS=Glycine max OX=3847 GN=RPS13 PE=2 SV=1)

HSP 1 Score: 274.2 bits (700), Expect = 7.8e-73
Identity = 136/140 (97.14%), Postives = 138/140 (98.57%), Query Frame = 0 

Query: 1   MGRMHSRGKGISASALPYKRTPPSWLKISSTDVEDNICKFAKKGLTPSQIGVILRDSHGI 60
           MGRMHSRGKGIS+SALPYKRTPPSWLKISS DVE+NICKFAKKGLTPSQIGVILRDSHGI
Sbjct: 1   MGRMHSRGKGISSSALPYKRTPPSWLKISSQDVEENICKFAKKGLTPSQIGVILRDSHGI 60

Query: 61  AQVRSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVES 120
           AQV SVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVES
Sbjct: 61  AQVNSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVES 120

Query: 121 RIHRLARYYKKTKKLPPVWK 141
           RIHRLARYYKKTKKLPPVWK
Sbjct: 121 RIHRLARYYKKTKKLPPVWK 140

[Close]
BLAST of Carg02486 vs. Swiss-Prot
Match: sp|P59224|RS132_ARATH (40S ribosomal protein S13-2 OS=Arabidopsis thaliana OX=3702 GN=RPS13B PE=2 SV=1)

HSP 1 Score: 262.3 bits (669), Expect = 3.1e-69
Identity = 129/140 (92.14%), Postives = 136/140 (97.14%), Query Frame = 0 

Query: 1   MGRMHSRGKGISASALPYKRTPPSWLKISSTDVEDNICKFAKKGLTPSQIGVILRDSHGI 60
           MGRMHSRGKGISASALPYKR+ PSWLK +S DV+++ICKFAKKGLTPSQIGVILRDSHGI
Sbjct: 1   MGRMHSRGKGISASALPYKRSSPSWLKTTSQDVDESICKFAKKGLTPSQIGVILRDSHGI 60

Query: 61  AQVRSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVES 120
            QV+SVTGSKILRILKAHGLAPEIPEDLYHLIKKAV+IRKHLERNRKDKDSKFRLILVES
Sbjct: 61  PQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVES 120

Query: 121 RIHRLARYYKKTKKLPPVWK 141
           RIHRLARYYKKTKKLPPVWK
Sbjct: 121 RIHRLARYYKKTKKLPPVWK 140

[Close]
BLAST of Carg02486 vs. Swiss-Prot
Match: sp|P46298|RS13_PEA (40S ribosomal protein S13 OS=Pisum sativum OX=3888 GN=RPS13 PE=2 SV=1)

HSP 1 Score: 261.5 bits (667), Expect = 5.2e-69
Identity = 129/140 (92.14%), Postives = 136/140 (97.14%), Query Frame = 0 

Query: 1   MGRMHSRGKGISASALPYKRTPPSWLKISSTDVEDNICKFAKKGLTPSQIGVILRDSHGI 60
           MGR+HS+GKGIS+SALPY+RT PSWLKISS DV++ ICKFAKKGLTPSQIGVILRDSHGI
Sbjct: 1   MGRLHSKGKGISSSALPYRRTAPSWLKISSQDVDETICKFAKKGLTPSQIGVILRDSHGI 60

Query: 61  AQVRSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVES 120
           AQV+SVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLER RKDKDSKFRLILVES
Sbjct: 61  AQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERFRKDKDSKFRLILVES 120

Query: 121 RIHRLARYYKKTKKLPPVWK 141
           RIHRLARYYKKTKKLPPVWK
Sbjct: 121 RIHRLARYYKKTKKLPPVWK 140

[Close]
BLAST of Carg02486 vs. Swiss-Prot
Match: sp|P59223|RS131_ARATH (40S ribosomal protein S13-1 OS=Arabidopsis thaliana OX=3702 GN=RPS13A PE=2 SV=1)

HSP 1 Score: 260.4 bits (664), Expect = 1.2e-68
Identity = 128/140 (91.43%), Postives = 135/140 (96.43%), Query Frame = 0 

Query: 1   MGRMHSRGKGISASALPYKRTPPSWLKISSTDVEDNICKFAKKGLTPSQIGVILRDSHGI 60
           MGRMHSRGKGISASALPYKR+ PSWLK +  DV+++ICKFAKKGLTPSQIGVILRDSHGI
Sbjct: 1   MGRMHSRGKGISASALPYKRSSPSWLKTTPQDVDESICKFAKKGLTPSQIGVILRDSHGI 60

Query: 61  AQVRSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVES 120
            QV+SVTGSKILRILKAHGLAPEIPEDLYHLIKKAV+IRKHLERNRKDKDSKFRLILVES
Sbjct: 61  PQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVES 120

Query: 121 RIHRLARYYKKTKKLPPVWK 141
           RIHRLARYYKKTKKLPPVWK
Sbjct: 121 RIHRLARYYKKTKKLPPVWK 140

[Close]
BLAST of Carg02486 vs. Swiss-Prot
Match: sp|Q69UI1|RS132_ORYSJ (40S ribosomal protein S13-2 OS=Oryza sativa subsp. japonica OX=39947 GN=Os08g0117300 PE=1 SV=1)

HSP 1 Score: 243.0 bits (619), Expect = 1.9e-63
Identity = 120/140 (85.71%), Postives = 129/140 (92.14%), Query Frame = 0 

Query: 1   MGRMHSRGKGISASALPYKRTPPSWLKISSTDVEDNICKFAKKGLTPSQIGVILRDSHGI 60
           MGRMHSRGKGIS+SALPYKRTPPSWLK +++DVE+ I K AKKG  PSQIGV+LRD HGI
Sbjct: 1   MGRMHSRGKGISSSALPYKRTPPSWLKTAASDVEEMIMKAAKKGQMPSQIGVVLRDQHGI 60

Query: 61  AQVRSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVES 120
             V+SVTGSKILRILKAHGLAPEIPEDLY LIKKAV+IRKHLERNRKDKDSKFRLILVES
Sbjct: 61  PLVKSVTGSKILRILKAHGLAPEIPEDLYFLIKKAVAIRKHLERNRKDKDSKFRLILVES 120

Query: 121 RIHRLARYYKKTKKLPPVWK 141
           RIHRLARYYK+TKKLPP WK
Sbjct: 121 RIHRLARYYKRTKKLPPTWK 140

[Close]
BLAST of Carg02486 vs. TrEMBL
Match: tr|A0A1S3ATA6|A0A1S3ATA6_CUCME (40S ribosomal protein S13-like OS=Cucumis melo OX=3656 GN=LOC103482656 PE=3 SV=1)

HSP 1 Score: 278.9 bits (712), Expect = 6.4e-72
Identity = 138/140 (98.57%), Postives = 140/140 (100.00%), Query Frame = 0 

Query: 1   MGRMHSRGKGISASALPYKRTPPSWLKISSTDVEDNICKFAKKGLTPSQIGVILRDSHGI 60
           MGRMHSRGKGISASALPYKRTPPSWLKISSTDVEDNICKFAKKGLTPSQIGVILRDSHGI
Sbjct: 1   MGRMHSRGKGISASALPYKRTPPSWLKISSTDVEDNICKFAKKGLTPSQIGVILRDSHGI 60

Query: 61  AQVRSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVES 120
           AQV+SVTG+KILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVES
Sbjct: 61  AQVKSVTGNKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVES 120

Query: 121 RIHRLARYYKKTKKLPPVWK 141
           RIHRLARYYKKTKKLPPVWK
Sbjct: 121 RIHRLARYYKKTKKLPPVWK 140

[Close]
BLAST of Carg02486 vs. TrEMBL
Match: tr|A0A0A0KMS8|A0A0A0KMS8_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G158550 PE=3 SV=1)

HSP 1 Score: 278.9 bits (712), Expect = 6.4e-72
Identity = 138/140 (98.57%), Postives = 140/140 (100.00%), Query Frame = 0 

Query: 1   MGRMHSRGKGISASALPYKRTPPSWLKISSTDVEDNICKFAKKGLTPSQIGVILRDSHGI 60
           MGRMHSRGKGISASALPYKRTPPSWLKISSTDVEDNICKFAKKGLTPSQIGVILRDSHGI
Sbjct: 1   MGRMHSRGKGISASALPYKRTPPSWLKISSTDVEDNICKFAKKGLTPSQIGVILRDSHGI 60

Query: 61  AQVRSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVES 120
           AQV+SVTG+KILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVES
Sbjct: 61  AQVKSVTGNKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVES 120

Query: 121 RIHRLARYYKKTKKLPPVWK 141
           RIHRLARYYKKTKKLPPVWK
Sbjct: 121 RIHRLARYYKKTKKLPPVWK 140

[Close]
BLAST of Carg02486 vs. TrEMBL
Match: tr|A0A059CIJ2|A0A059CIJ2_EUCGR (Uncharacterized protein OS=Eucalyptus grandis OX=71139 GN=EUGRSUZ_D02461 PE=3 SV=1)

HSP 1 Score: 277.3 bits (708), Expect = 1.9e-71
Identity = 138/140 (98.57%), Postives = 139/140 (99.29%), Query Frame = 0 

Query: 1   MGRMHSRGKGISASALPYKRTPPSWLKISSTDVEDNICKFAKKGLTPSQIGVILRDSHGI 60
           MGRMHSRGKGISASALPYKRTPPSWLKISS DVE+NICKFAKKGLTPSQIGVILRDSHGI
Sbjct: 1   MGRMHSRGKGISASALPYKRTPPSWLKISSQDVEENICKFAKKGLTPSQIGVILRDSHGI 60

Query: 61  AQVRSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVES 120
           AQVRSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVES
Sbjct: 61  AQVRSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVES 120

Query: 121 RIHRLARYYKKTKKLPPVWK 141
           RIHRLARYYKKTKKLPPVWK
Sbjct: 121 RIHRLARYYKKTKKLPPVWK 140

[Close]
BLAST of Carg02486 vs. TrEMBL
Match: tr|V4RLB2|V4RLB2_9ROSI (Uncharacterized protein OS=Citrus clementina OX=85681 GN=CICLE_v10006145mg PE=3 SV=1)

HSP 1 Score: 276.6 bits (706), Expect = 3.2e-71
Identity = 137/140 (97.86%), Postives = 139/140 (99.29%), Query Frame = 0 

Query: 1   MGRMHSRGKGISASALPYKRTPPSWLKISSTDVEDNICKFAKKGLTPSQIGVILRDSHGI 60
           MGRMHSRGKGISASALPYKRTPPSWLKISS DVEDNICKFAKKGLTPSQIGVILRDSHGI
Sbjct: 1   MGRMHSRGKGISASALPYKRTPPSWLKISSQDVEDNICKFAKKGLTPSQIGVILRDSHGI 60

Query: 61  AQVRSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVES 120
           AQV+SVTGSKILRILKAHGLAPEIPEDLYHLIKKAV+IRKHLERNRKDKDSKFRLILVES
Sbjct: 61  AQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVES 120

Query: 121 RIHRLARYYKKTKKLPPVWK 141
           RIHRLARYYKKTKKLPPVWK
Sbjct: 121 RIHRLARYYKKTKKLPPVWK 140

[Close]
BLAST of Carg02486 vs. TrEMBL
Match: tr|A0A0D2S9Y5|A0A0D2S9Y5_GOSRA (Uncharacterized protein OS=Gossypium raimondii OX=29730 GN=B456_007G090600 PE=3 SV=1)

HSP 1 Score: 276.6 bits (706), Expect = 3.2e-71
Identity = 137/140 (97.86%), Postives = 139/140 (99.29%), Query Frame = 0 

Query: 1   MGRMHSRGKGISASALPYKRTPPSWLKISSTDVEDNICKFAKKGLTPSQIGVILRDSHGI 60
           MGRMHSRGKGISASALPYKRTPPSWLKISS DVEDNICKFAKKGLTPSQIGVILRDSHGI
Sbjct: 1   MGRMHSRGKGISASALPYKRTPPSWLKISSQDVEDNICKFAKKGLTPSQIGVILRDSHGI 60

Query: 61  AQVRSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVES 120
           AQV+SVTGSKILRILKAHGLAPEIPEDLYHLIKKAV+IRKHLERNRKDKDSKFRLILVES
Sbjct: 61  AQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVES 120

Query: 121 RIHRLARYYKKTKKLPPVWK 141
           RIHRLARYYKKTKKLPPVWK
Sbjct: 121 RIHRLARYYKKTKKLPPVWK 140

The following BLAST results are available for this feature:
BLAST of Carg02486 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022958210.11.9e-72100.0040S ribosomal protein S13-like [Cucurbita moschata] >XP_022922396.1 40S ribosoma... [more]
XP_004147576.19.7e-7298.57PREDICTED: 40S ribosomal protein S13 [Cucumis sativus] >XP_008437146.1 PREDICTED... [more]
XP_022157239.19.7e-7298.5740S ribosomal protein S13-like [Momordica charantia][more]
XP_010053901.12.8e-7198.57PREDICTED: 40S ribosomal protein S13 [Eucalyptus grandis] >XP_022943482.1 40S ri... [more]
XP_006421743.14.8e-7197.8640S ribosomal protein S13 [Citrus clementina] >XP_006445274.1 40S ribosomal prot... [more]
BLAST of Carg02486 vs. TAIR10
Match NameE-valueIdentityDescription
AT4G00100.11.7e-7092.14ribosomal protein S13A[more]
AT3G60770.16.4e-7091.43Ribosomal protein S13/S15[more]
BLAST of Carg02486 vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|P62302|RS13_SOYBN7.8e-7397.1440S ribosomal protein S13 OS=Glycine max OX=3847 GN=RPS13 PE=2 SV=1[more]
sp|P59224|RS132_ARATH3.1e-6992.1440S ribosomal protein S13-2 OS=Arabidopsis thaliana OX=3702 GN=RPS13B PE=2 SV=1[more]
sp|P46298|RS13_PEA5.2e-6992.1440S ribosomal protein S13 OS=Pisum sativum OX=3888 GN=RPS13 PE=2 SV=1[more]
sp|P59223|RS131_ARATH1.2e-6891.4340S ribosomal protein S13-1 OS=Arabidopsis thaliana OX=3702 GN=RPS13A PE=2 SV=1[more]
sp|Q69UI1|RS132_ORYSJ1.9e-6385.7140S ribosomal protein S13-2 OS=Oryza sativa subsp. japonica OX=39947 GN=Os08g011... [more]
BLAST of Carg02486 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A1S3ATA6|A0A1S3ATA6_CUCME6.4e-7298.5740S ribosomal protein S13-like OS=Cucumis melo OX=3656 GN=LOC103482656 PE=3 SV=1[more]
tr|A0A0A0KMS8|A0A0A0KMS8_CUCSA6.4e-7298.57Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G158550 PE=3 SV=1[more]
tr|A0A059CIJ2|A0A059CIJ2_EUCGR1.9e-7198.57Uncharacterized protein OS=Eucalyptus grandis OX=71139 GN=EUGRSUZ_D02461 PE=3 SV... [more]
tr|V4RLB2|V4RLB2_9ROSI3.2e-7197.86Uncharacterized protein OS=Citrus clementina OX=85681 GN=CICLE_v10006145mg PE=3 ... [more]
tr|A0A0D2S9Y5|A0A0D2S9Y5_GOSRA3.2e-7197.86Uncharacterized protein OS=Gossypium raimondii OX=29730 GN=B456_007G090600 PE=3 ... [more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0003735structural constituent of ribosome
Vocabulary: Cellular Component
TermDefinition
GO:0005622intracellular
GO:0005840ribosome
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
Vocabulary: INTERPRO
TermDefinition
IPR009068S15_NS1_RNA-bd
IPR023029Ribosomal_S15P
IPR012606Ribosomal_S13/S15_N
IPR000589Ribosomal_S15
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0042254 ribosome biogenesis
biological_process GO:0006412 translation
cellular_component GO:0005840 ribosome
cellular_component GO:0005622 intracellular
molecular_function GO:0003735 structural constituent of ribosome
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg02486-RACarg02486-RAmRNA


InterPro
Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000589Ribosomal protein S15SMARTSM01387Ribosomal_S15_2coord: 70..140
e-value: 9.2E-9
score: 45.1
IPR000589Ribosomal protein S15PFAMPF00312Ribosomal_S15coord: 74..134
e-value: 7.6E-15
score: 54.8
IPR000589Ribosomal protein S15PROSITEPS00362RIBOSOMAL_S15coord: 98..128
IPR000589Ribosomal protein S15CDDcd00353Ribosomal_S15p_S13ecoord: 70..140
e-value: 7.56487E-24
score: 88.329
IPR012606Ribosomal protein S13/S15, N-terminalSMARTSM01386Ribosomal_S13_N_2coord: 1..60
e-value: 9.1E-40
score: 148.1
IPR012606Ribosomal protein S13/S15, N-terminalPFAMPF08069Ribosomal_S13_Ncoord: 1..60
e-value: 3.0E-32
score: 110.4
NoneNo IPR availableGENE3DG3DSA:1.10.8.1030coord: 35..82
e-value: 2.1E-29
score: 103.0
NoneNo IPR availableGENE3DG3DSA:1.10.287.10coord: 83..140
e-value: 2.6E-32
score: 112.6
NoneNo IPR availablePANTHERPTHR11885:SF13SUBFAMILY NOT NAMEDcoord: 1..140
IPR023029Ribosomal protein S15PPANTHERPTHR11885RIBOSOMAL PROTEIN S15P/S13Ecoord: 1..140
IPR023029Ribosomal protein S15PHAMAPMF_01343_ARibosomal_S15_Acoord: 3..140
score: 28.42
IPR009068S15/NS1, RNA-bindingSUPERFAMILYSSF47060S15/NS1 RNA-binding domaincoord: 66..139

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Carg02486Cla011539Watermelon (97103) v1carwmB0926
Carg02486MELO3C005580Melon (DHL92) v3.5.1carmeB0903
Carg02486MELO3C005580.2Melon (DHL92) v3.6.1carmedB0910
Carg02486Bhi12G000352Wax gourdcarwgoB1064
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
Carg02486Carg25273Silver-seed gourdcarcarB633
Carg02486Carg21606Silver-seed gourdcarcarB635
Carg02486Carg16692Silver-seed gourdcarcarB643
The following block(s) are covering this gene:
GeneOrganismBlock
Carg02486Watermelon (97103) v2carwmbB0963
Carg02486Watermelon (97103) v2carwmbB0969
Carg02486Wax gourdcarwgoB1063
Carg02486Cucumber (Gy14) v2carcgybB0906
Carg02486Cucumber (Gy14) v2carcgybB0913
Carg02486Cucumber (Gy14) v1carcgyB1042
Carg02486Cucumber (Gy14) v1carcgyB1043
Carg02486Cucurbita maxima (Rimu)carcmaB1261
Carg02486Cucurbita maxima (Rimu)carcmaB1264
Carg02486Cucurbita maxima (Rimu)carcmaB1268
Carg02486Cucurbita moschata (Rifu)carcmoB1230
Carg02486Cucurbita moschata (Rifu)carcmoB1234
Carg02486Cucurbita moschata (Rifu)carcmoB1237
Carg02486Cucurbita pepo (Zucchini)carcpeB1267
Carg02486Cucurbita pepo (Zucchini)carcpeB1271
Carg02486Cucurbita pepo (Zucchini)carcpeB1272
Carg02486Cucurbita pepo (Zucchini)carcpeB1282
Carg02486Wild cucumber (PI 183967)carcpiB0955
Carg02486Wild cucumber (PI 183967)carcpiB0962
Carg02486Cucumber (Chinese Long) v2carcuB0933
Carg02486Cucumber (Chinese Long) v2carcuB0940
Carg02486Cucumber (Chinese Long) v3carcucB0956
Carg02486Cucumber (Chinese Long) v3carcucB0964
Carg02486Bottle gourd (USVL1VR-Ls)carlsiB841
Carg02486Bottle gourd (USVL1VR-Ls)carlsiB837
Carg02486Melon (DHL92) v3.5.1carmeB0911
Carg02486Melon (DHL92) v3.6.1carmedB0918
Carg02486Watermelon (Charleston Gray)carwcgB0899
Carg02486Watermelon (Charleston Gray)carwcgB0903
Carg02486Watermelon (97103) v1carwmB0920