Carg16626 (gene) Silver-seed gourd

Overview
NameCarg16626
Typegene
OrganismCucurbita argyrosperma (Silver-seed gourd)
DescriptionE3 ubiquitin-protein ligase At3g02290-like
LocationCucurbita_argyrosperma_scaffold_064 : 129127 .. 131515 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTGCCAGAAAATGGCTTTTTTCTGCAGGTTCTTGCTTATTTGACTTGTTTTGCCCTTTCCTTCAATTGTGGTCTGATGAAATTCCTGCTCCTCTCCGCAAAACAAATAAATTATGTATGAAGGGAAAATAGCATATGTGTTTGCCCTATGTGTAGGTTCGAACTCTTGGCGAGATTTTCAACTCCAATCTTGAGTATAACCTAGGCTACAGTGTACTCTGGTTACTGCTTTCTCCTATGATAATTTATGATTATTTCATCACTACTAGCTTTGTTAATCTATGATTCACTCATCGTATTATCAATCATCTTTTGTGACAAATACTGCAGTGCATTTTTCATATCTCCTAATGGAGTTTTTGATTTTACATAAACTAGACATGTCTTTCCTGAATATTGTGCAGAGGGAACTATACAGTTAAATTAATTTAGGATGTTTTCTGTAACAGGGTTGGCAGTCCATAAAATTTTGAGGACGTATTGCTACTAGTGCGATGATTTGTTGGTGTGTGTTGTAGATAAGTAAGCTGAAATGGGAGGTTGCTGCTGCTGCTGTTCTTCGAAAGAAACAGAATCAAATATCGCACCAGGCTACTATTATGTCAGTATTGAATTTTTCATTGGATGTTTATTGTCATCTTCTTATCAATCAAATTCATTATCGTAAGCAAGGACAATGCAGCCATCATCTGGTATTCATTCGTTTCTTTATTATCATTGGCAGCATGTCTAGATGCATGTAGCTGTAGGTATTCCGTTATAACCTGTAAGTTAACGTAACTTGCATTATTTGAGGCACAAAACTGAACTGATTGTAGTGCGAGAGTGAATTCTTGAATGAAGCTTCTTTTTATAAGTAATTCTTTGCATTTAATGGTATAATTCAGCATCTTTGTGTTTTCCATATAAGTCTTCTTCCTTAGCATGAATCAAGTTAGATTGGCTGTGATTTAGAAGATGCTTGTGTATTACACTTGAATAAATAATGCAAGTTGCCGATTTAAATTTAAGTTATAAACGTGACATAGGCTACAATTTCTATTATTTGATCTCGTAAGTGGTTGAGATTTATCGTTAACTGCTAACTAACATGATGGGCTAGGGAATTTTCTTTCCATTGTCAATTTCCTTGCTCAAAATCTCAATTTACTTGAATCTAAGTTTTGAACTTTTGATGCAGTACCCAAGAGCATCGGAGGAGCATGTTCCCCTGTCATCTCCACTTAGTGCTCCCCCAGCATTTCCAATGGGGCTTTTAGTCGATACAAATCTGGATACATCAATCCCAGACACGTATAGATCGCCTCCCTTGCCTATGCCATATGATGTTGTTTTAACACATCCACATACTCCACCTGTGGCTCAAGAAATCTGCAGCAATAAGAATGATGCTGCAGCTCAGACTACCAATTCCGATACAATTCAAGAAACAACATGCATAAACACTCGGGAAACTTCAGCCAAATGTGAAGGCATCGACGATGAGTCAGACTGCAAGAAGCATACAGATTTTGAAGTGGACACATTAAAGGAATCTGAAATCGAACTTTCAAAGGGTGTGAAATCTGTGGTCTTACCAATTGAAGAGGAGGATGTTTGTCCCATCTGTTTGGAAGGTGAAGTTTTGCCAAAACTTTGTTTAGCTACCTATACCAACCCACCAAACCATGGAATTTTTCTAACCTTATATGTCTATTGCCAACGTTCGACATTTTATTTGCTTGAACTAACAAGTCACAACATCGTTGCTTTCTCGATAACCGCACAGTACCATTTCATTTTAATTACTTAGGACTAACAAGTCACCTAGTCATCATCTTCTATTGTCTTATGCAGAATATGACGGAGAGAATCCAAAACTTACAACAAAATGCGAGCATCATTTTCATCTTGCATGCATTTTGGAATGGGTGGAAAGAAGTGATATATGTCCTGTGTGCGATCAGGTCTGTTTCAGCAGTTTATGCTTTTTATCATCTGTCACCCCACTCATTTGCGTGTAACCCACCAAGATTACCTTTCTTTATGTCCTAATCATCTGCCTCTTACATACAGGAAATGGTTTTCAGCCCTCCAATTGATTAGTGACAAGACATTGAAAGTAAAGTTGAAAGTATAGGTTTATAAAGTTCCCGTGATTTTGCATCCAGCTGCAAGCTTCAGGTTTGTTTCTTTTAGTTCGTTCTCTTTTCTTCTTTTTCCATAATGAGTGATTTCTTCATTCCTGTTGCACTCTTTTCTTTGTGAATTTGCGTCTGAACATAGAAATGGGGGGAAAATTGGGAGAATGATTCTTCTTTCTTTCTTTTGTTTTGTTGGTGGGGGGGATGTAAATACAGTTTGTGCAATATATAGTATATCTGAGCTTGGTTTTTCATTTTAGTTCC

mRNA sequence

ATGTTGCCAGAAAATGGCTTTTTTCTGCAGGTTCGAACTCTTGGCGAGATTTTCAACTCCAATCTTGAGTATAACCTAGGCTACAGTATAAGTAAGCTGAAATGGGAGGTTGCTGCTGCTGCTGTTCTTCGAAAGAAACAGAATCAAATATCGCACCAGGCTACTATTATGTCATACCCAAGAGCATCGGAGGAGCATGTTCCCCTGTCATCTCCACTTAGTGCTCCCCCAGCATTTCCAATGGGGCTTTTAGTCGATACAAATCTGGATACATCAATCCCAGACACGTATAGATCGCCTCCCTTGCCTATGCCATATGATGTTGTTTTAACACATCCACATACTCCACCTGTGGCTCAAGAAATCTGCAGCAATAAGAATGATGCTGCAGCTCAGACTACCAATTCCGATACAATTCAAGAAACAACATGCATAAACACTCGGGAAACTTCAGCCAAATGTGAAGGCATCGACGATGAGTCAGACTGCAAGAAGCATACAGATTTTGAAGTGGACACATTAAAGGAATCTGAAATCGAACTTTCAAAGGGTGTGAAATCTGTGGTCTTACCAATTGAAGAGGAGGATGTTTGTCCCATCTGTTTGGAAGAATATGACGGAGAGAATCCAAAACTTACAACAAAATGCGAGCATCATTTTCATCTTGCATGCATTTTGGAATGGGTGGAAAGAAGTGATATATGTCCTGTGTGCGATCAGGAAATGGTTTTCAGCCCTCCAATTGATTAGTGACAAGACATTGAAAGTAAAGTTGAAAGTATAGGTTTATAAAGTTCCCGTGATTTTGCATCCAGCTGCAAGCTTCAGGTTTGTTTCTTTTAGTTCGTTCTCTTTTCTTCTTTTTCCATAATGAGTGATTTCTTCATTCCTGTTGCACTCTTTTCTTTGTGAATTTGCGTCTGAACATAGAAATGGGGGGAAAATTGGGAGAATGATTCTTCTTTCTTTCTTTTGTTTTGTTGGTGGGGGGGATGTAAATACAGTTTGTGCAATATATAGTATATCTGAGCTTGGTTTTTCATTTTAGTTCC

Coding sequence (CDS)

ATGTTGCCAGAAAATGGCTTTTTTCTGCAGGTTCGAACTCTTGGCGAGATTTTCAACTCCAATCTTGAGTATAACCTAGGCTACAGTATAAGTAAGCTGAAATGGGAGGTTGCTGCTGCTGCTGTTCTTCGAAAGAAACAGAATCAAATATCGCACCAGGCTACTATTATGTCATACCCAAGAGCATCGGAGGAGCATGTTCCCCTGTCATCTCCACTTAGTGCTCCCCCAGCATTTCCAATGGGGCTTTTAGTCGATACAAATCTGGATACATCAATCCCAGACACGTATAGATCGCCTCCCTTGCCTATGCCATATGATGTTGTTTTAACACATCCACATACTCCACCTGTGGCTCAAGAAATCTGCAGCAATAAGAATGATGCTGCAGCTCAGACTACCAATTCCGATACAATTCAAGAAACAACATGCATAAACACTCGGGAAACTTCAGCCAAATGTGAAGGCATCGACGATGAGTCAGACTGCAAGAAGCATACAGATTTTGAAGTGGACACATTAAAGGAATCTGAAATCGAACTTTCAAAGGGTGTGAAATCTGTGGTCTTACCAATTGAAGAGGAGGATGTTTGTCCCATCTGTTTGGAAGAATATGACGGAGAGAATCCAAAACTTACAACAAAATGCGAGCATCATTTTCATCTTGCATGCATTTTGGAATGGGTGGAAAGAAGTGATATATGTCCTGTGTGCGATCAGGAAATGGTTTTCAGCCCTCCAATTGATTAG

Protein sequence

MLPENGFFLQVRTLGEIFNSNLEYNLGYSISKLKWEVAAAAVLRKKQNQISHQATIMSYPRASEEHVPLSSPLSAPPAFPMGLLVDTNLDTSIPDTYRSPPLPMPYDVVLTHPHTPPVAQEICSNKNDAAAQTTNSDTIQETTCINTRETSAKCEGIDDESDCKKHTDFEVDTLKESEIELSKGVKSVVLPIEEEDVCPICLEEYDGENPKLTTKCEHHFHLACILEWVERSDICPVCDQEMVFSPPID
Homology
[Close]
BLAST of Carg16626 vs. NCBI nr
Match: XP_022929148.1 (probable E3 ubiquitin-protein ligase RHB1A [Cucurbita moschata])

HSP 1 Score: 351.3 bits (900), Expect = 2.7e-93
Identity = 182/186 (97.85%), Postives = 182/186 (97.85%), Query Frame = 0 

Query: 64  EEHVPLSSPLSAPPAFPMGLLVDTNLDTSIPDTYRSPPLPMPYDVVLTHPHTPPVAQEIC 123
           EEHVPLSSPLSAPPAFPMGLLVDTNLDTSIPDTYRSPPLPMPYDVVLTHPHTPPVAQEIC
Sbjct: 29  EEHVPLSSPLSAPPAFPMGLLVDTNLDTSIPDTYRSPPLPMPYDVVLTHPHTPPVAQEIC 88

Query: 124 SNKNDAAAQTTNSDTIQETTCINTRETSAKCEGIDDESDCKKHTDFEVDTLKESEIELSK 183
           SNKNDAAAQTTNSDTIQETTCINTRETSAKCEGIDDESDCKKHTDFEVDTLKESEIELSK
Sbjct: 89  SNKNDAAAQTTNSDTIQETTCINTRETSAKCEGIDDESDCKKHTDFEVDTLKESEIELSK 148

Query: 184 GVKSVVLPIEEEDVCPICLEEYDGENPKLTTKCEHHFHLACILEWXXXXXXXXXXXXXMV 243
           GVKSVVLPIEEEDVCPICLEEYDGENPKLTTKCEHHFHLACILEW  XXXXXXXXX  MV
Sbjct: 149 GVKSVVLPIEEEDVCPICLEEYDGENPKLTTKCEHHFHLACILEWMEXXXXXXXXXQEMV 208

Query: 244 FSPPID 250
           FSPPID
Sbjct: 209 FSPPID 214

[Close]
BLAST of Carg16626 vs. NCBI nr
Match: XP_023551494.1 (probable E3 ubiquitin-protein ligase RHB1A [Cucurbita pepo subsp. pepo])

HSP 1 Score: 350.1 bits (897), Expect = 6.1e-93
Identity = 182/187 (97.33%), Postives = 182/187 (97.33%), Query Frame = 0 

Query: 63  SEEHVPLSSPLSAPPAFPMGLLVDTNLDTSIPDTYRSPPLPMPYDVVLTHPHTPPVAQEI 122
           SEEHVPLSSPLSAPPAFPMGLLVDTNLDTSIPDTYRSPPLPMPYDVVLTHPHTPPVAQEI
Sbjct: 28  SEEHVPLSSPLSAPPAFPMGLLVDTNLDTSIPDTYRSPPLPMPYDVVLTHPHTPPVAQEI 87

Query: 123 CSNKNDAAAQTTNSDTIQETTCINTRETSAKCEGIDDESDCKKHTDFEVDTLKESEIELS 182
           CSNKNDAAAQTTNSDTIQETTCINTRETSAKCEGI DESDCKKHTDFEVDTLKESEIELS
Sbjct: 88  CSNKNDAAAQTTNSDTIQETTCINTRETSAKCEGIGDESDCKKHTDFEVDTLKESEIELS 147

Query: 183 KGVKSVVLPIEEEDVCPICLEEYDGENPKLTTKCEHHFHLACILEWXXXXXXXXXXXXXM 242
           KGVKSVVLPIEEEDVCPICLEEYDGENPKLTTKCEHHFHLACILEW  XXXXXXXXX  M
Sbjct: 148 KGVKSVVLPIEEEDVCPICLEEYDGENPKLTTKCEHHFHLACILEWMEXXXXXXXXXQEM 207

Query: 243 VFSPPID 250
           VFSPPID
Sbjct: 208 VFSPPID 214

[Close]
BLAST of Carg16626 vs. NCBI nr
Match: XP_022970099.1 (probable E3 ubiquitin-protein ligase RHB1A [Cucurbita maxima])

HSP 1 Score: 349.7 bits (896), Expect = 7.9e-93
Identity = 181/188 (96.28%), Postives = 184/188 (97.87%), Query Frame = 0 

Query: 62  ASEEHVPLSSPLSAPPAFPMGLLVDTNLDTSIPDTYRSPPLPMPYDVVLTHPHTPPVAQE 121
           ASEEHVPLSSPL+APPAFPMGLLVDTNLDTSIPDTYRSPPLPMPY+VVL+HPHTPPVAQE
Sbjct: 26  ASEEHVPLSSPLNAPPAFPMGLLVDTNLDTSIPDTYRSPPLPMPYNVVLSHPHTPPVAQE 85

Query: 122 ICSNKNDAAAQTTNSDTIQETTCINTRETSAKCEGIDDESDCKKHTDFEVDTLKESEIEL 181
           ICSNKNDAAAQTTNSDTIQETTCINTRETSAKCEGIDDESDCKKHTDFEVDTLKESEIEL
Sbjct: 86  ICSNKNDAAAQTTNSDTIQETTCINTRETSAKCEGIDDESDCKKHTDFEVDTLKESEIEL 145

Query: 182 SKGVKSVVLPIEEEDVCPICLEEYDGENPKLTTKCEHHFHLACILEWXXXXXXXXXXXXX 241
           SKGVKSVVLPIEEEDVCPICLEEYDGENPKLTTKCEHHFHLACILEW  XXXXXXXXX  
Sbjct: 146 SKGVKSVVLPIEEEDVCPICLEEYDGENPKLTTKCEHHFHLACILEWMEXXXXXXXXXQE 205

Query: 242 MVFSPPID 250
           MVFSPPID
Sbjct: 206 MVFSPPID 213

[Close]
BLAST of Carg16626 vs. NCBI nr
Match: XP_022156155.1 (probable E3 ubiquitin-protein ligase RHB1A isoform X2 [Momordica charantia])

HSP 1 Score: 320.9 bits (821), Expect = 3.9e-84
Identity = 167/193 (86.53%), Postives = 172/193 (89.12%), Query Frame = 0 

Query: 57  MSYPRASEEHVPLSSPLSAPPAFPMGLLVDTNLDTSIPDTYRSPPLPMPYDVVLTHPHTP 116
           M YPRAS+EHVPLSSP+ AP AF  GLLVDTNLDTSIPDTYRSPPLPMPYDVVLTHPHTP
Sbjct: 1   MQYPRASDEHVPLSSPIGAPSAFSSGLLVDTNLDTSIPDTYRSPPLPMPYDVVLTHPHTP 60

Query: 117 PVAQEICSNKNDAAAQTTNSDTIQETTCINTRETSAKCEGIDDESDCKKHTDFEVDTLKE 176
           PVAQEI SNKNDAAAQTTNSD +QE  C N RETSAKCEGI DESDCKKHTDFE DTLKE
Sbjct: 61  PVAQEIGSNKNDAAAQTTNSDAVQEIACTNARETSAKCEGI-DESDCKKHTDFETDTLKE 120

Query: 177 SEIELSKGVKSVVLPIEEEDVCPICLEEYDGENPKLTTKCEHHFHLACILEWXXXXXXXX 236
           SEIELSKGV+SV L IEEEDVCPICLEEYDGENPKLTTKCEHHFHLACILEW   XXXXX
Sbjct: 121 SEIELSKGVESVALAIEEEDVCPICLEEYDGENPKLTTKCEHHFHLACILEWMERXXXXX 180

Query: 237 XXXXXMVFSPPID 250
           XX   M+FSPPID
Sbjct: 181 XXDQEMLFSPPID 192

[Close]
BLAST of Carg16626 vs. NCBI nr
Match: XP_023534774.1 (probable E3 ubiquitin-protein ligase RHB1A [Cucurbita pepo subsp. pepo] >XP_023534775.1 probable E3 ubiquitin-protein ligase RHB1A [Cucurbita pepo subsp. pepo])

HSP 1 Score: 319.7 bits (818), Expect = 8.8e-84
Identity = 166/190 (87.37%), Postives = 174/190 (91.58%), Query Frame = 0 

Query: 60  PRASEEHVPLSSPLSAPPAFPMGLLVDTNLDTSIPDTYRSPPLPMPYDVVLTHPHTPPVA 119
           PRASEEHVPLSSPLSA PAFP G+LVDTNLDTSIPDTYRSPPLP+PYDVVLTHPHTPP A
Sbjct: 24  PRASEEHVPLSSPLSATPAFPTGILVDTNLDTSIPDTYRSPPLPIPYDVVLTHPHTPPAA 83

Query: 120 QEICSNKNDAAAQTTNSDTIQETTCINTRETSAKCEGIDDESDCKKHTDFEVDTLKESEI 179
           QEI SNKN+A AQT N+D IQET CINTRETSAKC+ I DESDCKKHTDFEVDTLKESEI
Sbjct: 84  QEIVSNKNEATAQTPNTDVIQETACINTRETSAKCDAI-DESDCKKHTDFEVDTLKESEI 143

Query: 180 ELSKGVKSVVLPIEEEDVCPICLEEYDGENPKLTTKCEHHFHLACILEWXXXXXXXXXXX 239
            LSKGV+SVV+P+EEEDVCPICLEEYDGENPKLTTKCEHHFHLACILEW  XXXXXXXX 
Sbjct: 144 GLSKGVESVVIPVEEEDVCPICLEEYDGENPKLTTKCEHHFHLACILEWMEXXXXXXXXD 203

Query: 240 XXMVFSPPID 250
             MVFSPPID
Sbjct: 204 QEMVFSPPID 212

[Close]
BLAST of Carg16626 vs. TAIR10
Match: AT5G41350.1 (RING/U-box superfamily protein)

HSP 1 Score: 130.2 bits (326), Expect = 1.8e-30
Identity = 80/186 (43.01%), Postives = 108/186 (58.06%), Query Frame = 0 

Query: 67  VPLSSPLS-APPAFPMG-LLVDTNLDTSIPDTYRSPPLPMPYDVVLTHPHTPPVAQE-IC 126
           VPLSS  +    A   G ++VDTNL+TS PD Y  PPLP P+DV +  P TP   +E  C
Sbjct: 32  VPLSSAHNRTSSAISTGVVVVDTNLETSSPDAYIPPPLPTPFDVPIGIPQTPASGEEATC 91

Query: 127 SNKNDAAAQTTNSDTIQETTCINTRETSAKCEGIDDESDCKKHTDFEVDTLKESEIELSK 186
            +  + +  + N+++ QET    T      C     E+D K  T+ ++++ +E + +LS 
Sbjct: 92  VDIREVSVDSANTESAQETVDGITLGVPTTCS--HKETDSKIQTEIDLESTEEIDPKLS- 151

Query: 187 GVKSVVLPIEEEDVCPICLEEYDGENPKLTTKCEHHFHLACILEWXXXXXXXXXXXXXMV 246
             K+V +PIEEE+ CPICLEEYD ENPKL  KC+HHFHLACILEW             MV
Sbjct: 152 --KAVFIPIEEEEDCPICLEEYDIENPKLVAKCDHHFHLACILEWMERSETCPVCNKEMV 211

Query: 247 FSPPID 250
           F   +D
Sbjct: 212 FDSTLD 212

[Close]
BLAST of Carg16626 vs. TAIR10
Match: AT4G00335.1 (RING-H2 finger B1A)

HSP 1 Score: 118.6 bits (296), Expect = 5.4e-27
Identity = 72/169 (42.60%), Postives = 98/169 (57.99%), Query Frame = 0 

Query: 60  PRASEEHVPLSSPLSAPPAFPMGLLVDTNLDTSIPDTYRSPPLPMPYDVVLTHPHTPPVA 119
           P + EE VP  +      AF  GLLVD  L+TSIPDT+   P P+PYD++L  P      
Sbjct: 23  PESFEELVPSGTRAGVGSAFTTGLLVDIGLETSIPDTF-CAPAPLPYDLLLGRP------ 82

Query: 120 QEICSNKNDAAAQTTNSDTIQETTCINTRETSAKCEGIDDESDCKKHTDFEVDTLKESEI 179
                       Q T+S++I+     ++ ET A CE +  ESDCK      + + ++S+ 
Sbjct: 83  ------------QCTDSESIKGRMSGSSFETLATCEDL-GESDCKTLASSVILSPRKSDF 142

Query: 180 ELSKGVKSVVLPIEEEDVCPICLEEYDGENPKLTTKCEHHFHLACILEW 229
              +G+K  +L  EEED CPIC E+YD ENP+LTTKCEH FHL+C+LEW
Sbjct: 143 SKHQGLK--ILVDEEEDCCPICFEDYDVENPRLTTKCEHEFHLSCLLEW 169

[Close]
BLAST of Carg16626 vs. TAIR10
Match: AT5G38895.3 (RING/U-box superfamily protein)

HSP 1 Score: 75.5 bits (184), Expect = 5.2e-14
Identity = 51/146 (34.93%), Postives = 71/146 (48.63%), Query Frame = 0 

Query: 87  TNLDTSIPDTYRSPPLPMPYDVVLTHPHTPPVAQEI-CSNKNDAAAQTTNSDTIQETTCI 146
           T LD S+   Y SPP P+PYD        P   + +  S+ +   ++    DT   +  +
Sbjct: 172 TALDDSLSSVYHSPPTPLPYDA------DPRYFRFVKGSSHSGEESEPLRGDTEMSSEAL 231

Query: 147 NTRETSAKCEGIDDESDCKKHTDFEVDTLKESEIELSK---GVKSVVLPIEEEDVCPICL 206
              +  AK    D E   K     EV T   S    SK   G++      ++ED+CP CL
Sbjct: 232 G--DGGAKWSKSDSEDGSK-----EVYTKGSSTFTKSKTMPGIEVYYADSDDEDICPTCL 291

Query: 207 EEYDGENPKLTTKCEHHFHLACILEW 229
           ++Y  ENPK+ TKC HHFHL+CI EW
Sbjct: 292 DDYTLENPKIITKCSHHFHLSCIYEW 304

[Close]
BLAST of Carg16626 vs. TAIR10
Match: AT3G02290.1 (RING/U-box superfamily protein)

HSP 1 Score: 72.4 bits (176), Expect = 4.4e-13
Identity = 43/142 (30.28%), Postives = 71/142 (50.00%), Query Frame = 0 

Query: 90  DTSIPDTYRSPPLPMPYDVVLTHPHTPPVAQEICSNKNDAAAQTTNSDTIQETTCINT-- 149
           D  + + +RS P P+PYD    +  +    +E  S+ +    +   SD+  ++       
Sbjct: 70  DNFLSEAFRSTPRPLPYDADPRYFRSLVSRREKGSSHSHEEVEPLRSDSDADSESFGVGG 129

Query: 150 -RETSAKCEGIDDESDCKKHTDFEVDTLKESEIELSKGVKSVVLPIEEEDVCPICLEEYD 209
            +  + K    D +S  +  +   +  L+     +    +++ +  E+EDVCP CLEEY 
Sbjct: 130 CKWANNKSTLSDKDSKEEYSSKSSLRILRSRSKSIMADSENMYILSEDEDVCPTCLEEYT 189

Query: 210 GENPKLTTKCEHHFHLACILEW 229
            ENPK+ TKC HHFHL+CI EW
Sbjct: 190 SENPKIVTKCSHHFHLSCIYEW 211

[Close]
BLAST of Carg16626 vs. TAIR10
Match: AT5G15790.1 (RING/U-box superfamily protein)

HSP 1 Score: 70.1 bits (170), Expect = 2.2e-12
Identity = 46/159 (28.93%), Postives = 77/159 (48.43%), Query Frame = 0 

Query: 74  SAPPAFPMGLLVDTNLDTSIPDTYRSPPLPMPYDV----VLTHPHTPPVAQEICSNKNDA 133
           S+  A  + +   T+ D  + +T+ S P P+PYD       +   +    ++  S+ +  
Sbjct: 55  SSLQATNVSIATSTSYDNFMSNTFHSTPRPLPYDADPRYFRSRRDSLVSRRDKGSSHSHE 114

Query: 134 AAQTTNSDTIQETTCINTRETSAKCEGIDDESDCKKHTDFEVDTLKESEIELSKGVKSVV 193
            A+   SD   ++   +   +    + I    D K+        + +S   +S   + + 
Sbjct: 115 EAEPLRSDADVDSESFSVEGSKWANKLIISGEDSKEEFSRSSRRILQSR-TMSTSNEGLY 174

Query: 194 LPIEEEDVCPICLEEYDGENPKLTTKCEHHFHLACILEW 229
           +  ++EDVCP CLEEY  ENPK+ TKC HHFHL+CI EW
Sbjct: 175 ITSDDEDVCPTCLEEYISENPKIVTKCSHHFHLSCIYEW 212

[Close]
BLAST of Carg16626 vs. Swiss-Prot
Match: sp|Q2HIJ8|RHB1A_ARATH (Probable E3 ubiquitin-protein ligase RHB1A OS=Arabidopsis thaliana OX=3702 GN=RHB1A PE=2 SV=1)

HSP 1 Score: 118.6 bits (296), Expect = 9.7e-26
Identity = 72/169 (42.60%), Postives = 98/169 (57.99%), Query Frame = 0 

Query: 60  PRASEEHVPLSSPLSAPPAFPMGLLVDTNLDTSIPDTYRSPPLPMPYDVVLTHPHTPPVA 119
           P + EE VP  +      AF  GLLVD  L+TSIPDT+   P P+PYD++L  P      
Sbjct: 23  PESFEELVPSGTRAGVGSAFTTGLLVDIGLETSIPDTF-CAPAPLPYDLLLGRP------ 82

Query: 120 QEICSNKNDAAAQTTNSDTIQETTCINTRETSAKCEGIDDESDCKKHTDFEVDTLKESEI 179
                       Q T+S++I+     ++ ET A CE +  ESDCK      + + ++S+ 
Sbjct: 83  ------------QCTDSESIKGRMSGSSFETLATCEDL-GESDCKTLASSVILSPRKSDF 142

Query: 180 ELSKGVKSVVLPIEEEDVCPICLEEYDGENPKLTTKCEHHFHLACILEW 229
              +G+K  +L  EEED CPIC E+YD ENP+LTTKCEH FHL+C+LEW
Sbjct: 143 SKHQGLK--ILVDEEEDCCPICFEDYDVENPRLTTKCEHEFHLSCLLEW 169

[Close]
BLAST of Carg16626 vs. Swiss-Prot
Match: sp|Q8LE94|RING3_ARATH (E3 ubiquitin-protein ligase At3g02290 OS=Arabidopsis thaliana OX=3702 GN=At3g02290 PE=2 SV=1)

HSP 1 Score: 72.4 bits (176), Expect = 8.0e-12
Identity = 43/142 (30.28%), Postives = 71/142 (50.00%), Query Frame = 0 

Query: 90  DTSIPDTYRSPPLPMPYDVVLTHPHTPPVAQEICSNKNDAAAQTTNSDTIQETTCINT-- 149
           D  + + +RS P P+PYD    +  +    +E  S+ +    +   SD+  ++       
Sbjct: 70  DNFLSEAFRSTPRPLPYDADPRYFRSLVSRREKGSSHSHEEVEPLRSDSDADSESFGVGG 129

Query: 150 -RETSAKCEGIDDESDCKKHTDFEVDTLKESEIELSKGVKSVVLPIEEEDVCPICLEEYD 209
            +  + K    D +S  +  +   +  L+     +    +++ +  E+EDVCP CLEEY 
Sbjct: 130 CKWANNKSTLSDKDSKEEYSSKSSLRILRSRSKSIMADSENMYILSEDEDVCPTCLEEYT 189

Query: 210 GENPKLTTKCEHHFHLACILEW 229
            ENPK+ TKC HHFHL+CI EW
Sbjct: 190 SENPKIVTKCSHHFHLSCIYEW 211

[Close]
BLAST of Carg16626 vs. Swiss-Prot
Match: sp|Q93ZF6|AIRP1_ARATH (E3 ubiquitin-protein ligase AIRP1 OS=Arabidopsis thaliana OX=3702 GN=AIRP1 PE=1 SV=1)

HSP 1 Score: 63.5 bits (153), Expect = 3.7e-09
Identity = 31/60 (51.67%), Postives = 38/60 (63.33%), Query Frame = 0 

Query: 169 FEVDTLKESEIELSKGVKSVVLPIEEEDVCPICLEEYDGENPKLTTKCEHHFHLACILEW 228
           + VD L  ++ EL K  +  +      D CPICLEEY+ +NPKL TKC H FHLACIL W
Sbjct: 83  WHVDDL--TDFELKKQYREAI------DECPICLEEYEIDNPKLLTKCGHDFHLACILAW 134

[Close]
BLAST of Carg16626 vs. Swiss-Prot
Match: sp|Q9ZT42|RHF2A_ARATH (E3 ubiquitin-protein ligase RHF2A OS=Arabidopsis thaliana OX=3702 GN=RHF2A PE=2 SV=1)

HSP 1 Score: 48.5 bits (114), Expect = 1.2e-04
Identity = 17/34 (50.00%), Postives = 22/34 (64.71%), Query Frame = 0 

Query: 195 EDVCPICLEEYDGENPKLTTKCEHHFHLACILEW 229
           +D C ICLE +   +P   T C+H +HL CILEW
Sbjct: 30  DDACSICLESFCESDPSTLTSCKHEYHLQCILEW 63

[Close]
BLAST of Carg16626 vs. Swiss-Prot
Match: sp|Q4TU14|RHF1A_ARATH (E3 ubiquitin-protein ligase RHF1A OS=Arabidopsis thaliana OX=3702 GN=RHF1A PE=1 SV=1)

HSP 1 Score: 45.8 bits (107), Expect = 8.0e-04
Identity = 15/31 (48.39%), Postives = 21/31 (67.74%), Query Frame = 0 

Query: 198 CPICLEEYDGENPKLTTKCEHHFHLACILEW 229
           C ICLE +  ++P   T C+H +HL CI+EW
Sbjct: 46  CSICLEPFTLQDPSTVTSCKHEYHLQCIIEW 76

[Close]
BLAST of Carg16626 vs. TrEMBL
Match: tr|A0A1S3AU90|A0A1S3AU90_CUCME (E3 ubiquitin-protein ligase At3g02290-like OS=Cucumis melo OX=3656 GN=LOC103482766 PE=4 SV=1)

HSP 1 Score: 304.3 bits (778), Expect = 2.5e-79
Identity = 164/189 (86.77%), Postives = 169/189 (89.42%), Query Frame = 0 

Query: 61  RASEEHVPLSSPLSAPPAFPMGLLVDTNLDTSIPDTYRSPPLPMPYDVVLTHPHTPPVAQ 120
           RASEEHVPLSSPL  P AF  GLLVDTNLDTSIPDTYRSPPLPMPYDVVLT P TPPVAQ
Sbjct: 25  RASEEHVPLSSPLRTPRAFSTGLLVDTNLDTSIPDTYRSPPLPMPYDVVLTSPLTPPVAQ 84

Query: 121 EICSNKNDAAAQTTNSDTIQETTCINTRETSAKCEGIDDESDCKKHTDFEVDTLKESEIE 180
           EI S KN+AAAQT NS+TIQET CINTRE SAKCEG+ DESDCKKHTDFEV+TLKESEIE
Sbjct: 85  EIGSYKNEAAAQTANSNTIQETACINTREASAKCEGV-DESDCKKHTDFEVNTLKESEIE 144

Query: 181 LSKGVKSVVLPIEEEDVCPICLEEYDGENPKLTTKCEHHFHLACILEWXXXXXXXXXXXX 240
           LSKGV+S VLPIEEEDVCPICLEEYDGENPKLTTKCEHHFHLACILEW   XXXXXXXX 
Sbjct: 145 LSKGVESAVLPIEEEDVCPICLEEYDGENPKLTTKCEHHFHLACILEWMERXXXXXXXXQ 204

Query: 241 XMVFSPPID 250
            MVFS PID
Sbjct: 205 EMVFSSPID 212

[Close]
BLAST of Carg16626 vs. TrEMBL
Match: tr|A0A0A0KQV6|A0A0A0KQV6_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G152960 PE=4 SV=1)

HSP 1 Score: 294.7 bits (753), Expect = 2.0e-76
Identity = 161/189 (85.19%), Postives = 165/189 (87.30%), Query Frame = 0 

Query: 61  RASEEHVPLSSPLSAPPAFPMGLLVDTNLDTSIPDTYRSPPLPMPYDVVLTHPHTPPVAQ 120
           RASEEHVPL SPL  P  F  GLLVDTNLDTSIPDTYRSPPLPMPYDVVLT P TPPV Q
Sbjct: 146 RASEEHVPL-SPLRTPREFSTGLLVDTNLDTSIPDTYRSPPLPMPYDVVLTSPLTPPVVQ 205

Query: 121 EICSNKNDAAAQTTNSDTIQETTCINTRETSAKCEGIDDESDCKKHTDFEVDTLKESEIE 180
           EI   KN+AAAQTTNS+TIQET CINTRETSAKCEG+ DESDCKKHTDFEVD LKESE E
Sbjct: 206 EISCYKNEAAAQTTNSNTIQETACINTRETSAKCEGV-DESDCKKHTDFEVDALKESENE 265

Query: 181 LSKGVKSVVLPIEEEDVCPICLEEYDGENPKLTTKCEHHFHLACILEWXXXXXXXXXXXX 240
           LSKGV+S VLPIEEEDVCPICLEEYDGENPKLTTKCEHHFHLACILEW   XXXXXXXX 
Sbjct: 266 LSKGVESAVLPIEEEDVCPICLEEYDGENPKLTTKCEHHFHLACILEWMERXXXXXXXXQ 325

Query: 241 XMVFSPPID 250
            MVFS PID
Sbjct: 326 EMVFSSPID 332

[Close]
BLAST of Carg16626 vs. TrEMBL
Match: tr|A0A2N9FK93|A0A2N9FK93_FAGSY (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS19098 PE=4 SV=1)

HSP 1 Score: 242.7 bits (618), Expect = 9.0e-61
Identity = 123/191 (64.40%), Postives = 140/191 (73.30%), Query Frame = 0 

Query: 59  YPRASEEHVPLSSPLSAPPAFPMGLLVDTNLDTSIPDTYRSPPLPMPYDVVLTHPHTPPV 118
           YPR SEEHVPLSS   +      GLLVDTNLDTSIPDTYRSPP PMPYDV L  P TPP+
Sbjct: 55  YPRVSEEHVPLSSHHGSASVLSAGLLVDTNLDTSIPDTYRSPPAPMPYDVALGRPQTPPL 114

Query: 119 AQEICSNKNDAAAQTTNSDTIQETTCINTRETSAKCEGIDDESDCKKHTDFEVDTLKESE 178
           AQEICSNK DAAAQT NS+++QE    NT+ET A+CE +  E +CK  T+FE+D+ KESE
Sbjct: 115 AQEICSNKGDAAAQTMNSNSVQEIVGGNTQETLAECEDL-KELECKSQTNFELDSPKESE 174

Query: 179 IELSKGVKSVVLPIEEEDVCPICLEEYDGENPKLTTKCEHHFHLACILEWXXXXXXXXXX 238
           +ELSK V++V    EE+D CPICLEEYD ENPK TTKCEHHFHLACILEW          
Sbjct: 175 VELSKSVETVFSATEEDDDCPICLEEYDAENPKKTTKCEHHFHLACILEWMERSDTCPVC 234

Query: 239 XXXMVFSPPID 250
              M+F PPID
Sbjct: 235 DKEMIFDPPID 244

[Close]
BLAST of Carg16626 vs. TrEMBL
Match: tr|A0A2P5EG97|A0A2P5EG97_9ROSA (43kDa postsynaptic protein OS=Trema orientalis OX=63057 GN=TorRG33x02_196160 PE=4 SV=1)

HSP 1 Score: 240.4 bits (612), Expect = 4.5e-60
Identity = 123/194 (63.40%), Postives = 139/194 (71.65%), Query Frame = 0 

Query: 59  YPRASEEHVPLSSPLSAPPAFPMGLLVDTNLDTSIPDTYRSPPLPMPYDVVLTHPHTPPV 118
           YPR+SEEHVPLSS  + P     GLLVDTNLDTS PDTYR PP P+PYDV L HPH+PPV
Sbjct: 26  YPRSSEEHVPLSSHHNPPSTLSTGLLVDTNLDTSSPDTYRPPPAPVPYDVALGHPHSPPV 85

Query: 119 AQEICSNKNDAAAQ---TTNSDTIQETTCINTRETSAKCEGIDDESDCKKHTDFEVDTLK 178
           AQEIC +KN A AQ   TTNSD+++E    N ++   KCE +  ESDCK  T FE+D  K
Sbjct: 86  AQEICGDKNSAVAQSQATTNSDSVREVAGGNVQDPLPKCEDL-KESDCKAETVFEIDAAK 145

Query: 179 ESEIELSKGVKSVVLPIEEEDVCPICLEEYDGENPKLTTKCEHHFHLACILEWXXXXXXX 238
           E E+ELSK V+SVVL  EEEDVCPICLEEYD ENPKL TKC+HHFHLACILEW       
Sbjct: 146 ELEVELSKKVESVVLTTEEEDVCPICLEEYDRENPKLATKCDHHFHLACILEWMERSESC 205

Query: 239 XXXXXXMVFSPPID 250
                 M+F PPID
Sbjct: 206 PVCDQEMIFDPPID 218

[Close]
BLAST of Carg16626 vs. TrEMBL
Match: tr|M5WND5|M5WND5_PRUPE (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_5G103600 PE=4 SV=1)

HSP 1 Score: 231.1 bits (588), Expect = 2.7e-57
Identity = 117/186 (62.90%), Postives = 133/186 (71.51%), Query Frame = 0 

Query: 64  EEHVPLSSPLSAPPAFPMGLLVDTNLDTSIPDTYRSPPLPMPYDV-VLTHPHTPPVAQEI 123
           +EHVPLSS      A   GLLVDTNLDTSIPDTYR PP P+PYDV V+ HPHTPP AQEI
Sbjct: 28  DEHVPLSSRQGVTSALSTGLLVDTNLDTSIPDTYRPPPTPIPYDVAVVGHPHTPPAAQEI 87

Query: 124 CSNKNDAAAQTTNSDTIQETTCINTRETSAKCEGIDDESDCKKHTDFEVDTLKESEIELS 183
           C NK++ A  TTNSD++ E    N +E S KCE + D SDCK  TDFE+D  K+SE+ELS
Sbjct: 88  CGNKSEGAVLTTNSDSVHEAVGGNAQEASPKCEDLKD-SDCKAQTDFELDAEKKSEVELS 147

Query: 184 KGVKSVVLPIEEEDVCPICLEEYDGENPKLTTKCEHHFHLACILEWXXXXXXXXXXXXXM 243
           K V+SV L  EEEDVCP CLEEYD +NPK+TTKCEHHFHLACILEW             M
Sbjct: 148 KSVESVALVPEEEDVCPTCLEEYDAQNPKITTKCEHHFHLACILEWMERSDTCPVCDQEM 207

Query: 244 VFSPPI 249
           +F PPI
Sbjct: 208 IFDPPI 212

The following BLAST results are available for this feature:
BLAST of Carg16626 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022929148.12.7e-9397.85probable E3 ubiquitin-protein ligase RHB1A [Cucurbita moschata][more]
XP_023551494.16.1e-9397.33probable E3 ubiquitin-protein ligase RHB1A [Cucurbita pepo subsp. pepo][more]
XP_022970099.17.9e-9396.28probable E3 ubiquitin-protein ligase RHB1A [Cucurbita maxima][more]
XP_022156155.13.9e-8486.53probable E3 ubiquitin-protein ligase RHB1A isoform X2 [Momordica charantia][more]
XP_023534774.18.8e-8487.37probable E3 ubiquitin-protein ligase RHB1A [Cucurbita pepo subsp. pepo] >XP_0235... [more]
BLAST of Carg16626 vs. TAIR10
Match NameE-valueIdentityDescription
AT5G41350.11.8e-3043.01RING/U-box superfamily protein[more]
AT4G00335.15.4e-2742.60RING-H2 finger B1A[more]
AT5G38895.35.2e-1434.93RING/U-box superfamily protein[more]
AT3G02290.14.4e-1330.28RING/U-box superfamily protein[more]
AT5G15790.12.2e-1228.93RING/U-box superfamily protein[more]
BLAST of Carg16626 vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|Q2HIJ8|RHB1A_ARATH9.7e-2642.60Probable E3 ubiquitin-protein ligase RHB1A OS=Arabidopsis thaliana OX=3702 GN=RH... [more]
sp|Q8LE94|RING3_ARATH8.0e-1230.28E3 ubiquitin-protein ligase At3g02290 OS=Arabidopsis thaliana OX=3702 GN=At3g022... [more]
sp|Q93ZF6|AIRP1_ARATH3.7e-0951.67E3 ubiquitin-protein ligase AIRP1 OS=Arabidopsis thaliana OX=3702 GN=AIRP1 PE=1 ... [more]
sp|Q9ZT42|RHF2A_ARATH1.2e-0450.00E3 ubiquitin-protein ligase RHF2A OS=Arabidopsis thaliana OX=3702 GN=RHF2A PE=2 ... [more]
sp|Q4TU14|RHF1A_ARATH8.0e-0448.39E3 ubiquitin-protein ligase RHF1A OS=Arabidopsis thaliana OX=3702 GN=RHF1A PE=1 ... [more]
BLAST of Carg16626 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A1S3AU90|A0A1S3AU90_CUCME2.5e-7986.77E3 ubiquitin-protein ligase At3g02290-like OS=Cucumis melo OX=3656 GN=LOC1034827... [more]
tr|A0A0A0KQV6|A0A0A0KQV6_CUCSA2.0e-7685.19Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G152960 PE=4 SV=1[more]
tr|A0A2N9FK93|A0A2N9FK93_FAGSY9.0e-6164.40Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS19098 PE=4 SV=1[more]
tr|A0A2P5EG97|A0A2P5EG97_9ROSA4.5e-6063.4043kDa postsynaptic protein OS=Trema orientalis OX=63057 GN=TorRG33x02_196160 PE=... [more]
tr|M5WND5|M5WND5_PRUPE2.7e-5762.90Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_5G103600 PE=4 SV=1[more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR013083Znf_RING/FYVE/PHD
IPR001841Znf_RING
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg16626-RACarg16626-RAmRNA


InterPro
Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001841Zinc finger, RING-typeSMARTSM00184ring_2coord: 198..238
e-value: 6.4E-8
score: 42.3
IPR001841Zinc finger, RING-typePFAMPF13639zf-RING_2coord: 197..238
e-value: 1.4E-11
score: 44.4
IPR001841Zinc finger, RING-typePROSITEPS50089ZF_RING_2coord: 198..239
score: 12.017
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3DG3DSA:3.30.40.10coord: 169..244
e-value: 7.4E-16
score: 59.1
NoneNo IPR availablePANTHERPTHR22937:SF49SUBFAMILY NOT NAMEDcoord: 47..249
NoneNo IPR availablePANTHERPTHR22937RING FINGER CONTAINING PROTEINcoord: 47..249
NoneNo IPR availableSUPERFAMILYSSF57850RING/U-boxcoord: 192..245

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Carg16626Cla011431Watermelon (97103) v1carwmB0938
Carg16626Cla021226Watermelon (97103) v1carwmB0935
Carg16626Csa5G152960Cucumber (Chinese Long) v2carcuB0954
Carg16626MELO3C005692Melon (DHL92) v3.5.1carmeB0920
Carg16626ClCG01G002540Watermelon (Charleston Gray)carwcgB0912
Carg16626CSPI05G05250Wild cucumber (PI 183967)carcpiB0977
Carg16626Cucsa.303310Cucumber (Gy14) v1carcgyB1054
Carg16626CmaCh15G012390Cucurbita maxima (Rimu)carcmaB1281
Carg16626CmaCh02G014380Cucurbita maxima (Rimu)carcmaB1283
Carg16626CmoCh02G014720Cucurbita moschata (Rifu)carcmoB1254
Carg16626CmoCh15G013030Cucurbita moschata (Rifu)carcmoB1252
Carg16626Lsi09G002400Bottle gourd (USVL1VR-Ls)carlsiB851
Carg16626Cp4.1LG05g03230Cucurbita pepo (Zucchini)carcpeB1298
Carg16626Cp4.1LG13g01370Cucurbita pepo (Zucchini)carcpeB1295
Carg16626CsGy5G002520Cucumber (Gy14) v2carcgybB0927
Carg16626MELO3C005692.2Melon (DHL92) v3.6.1carmedB0927
Carg16626CsaV3_3G008810Cucumber (Chinese Long) v3carcucB0976
Carg16626CsaV3_5G002650Cucumber (Chinese Long) v3carcucB0979
Carg16626Cla97C01G002600Watermelon (97103) v2carwmbB0980
Carg16626Cla97C05G081780Watermelon (97103) v2carwmbB0982
Carg16626Bhi12G000267Wax gourdcarwgoB1081
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Carg16626Silver-seed gourdcarcarB643
Carg16626Cucurbita pepo (Zucchini)carcpeB1294
Carg16626Watermelon (97103) v2carwmbB0986