Carg16439 (gene) Silver-seed gourd

NameCarg16439
Typegene
OrganismCucurbita argyrosperma (Silver-seed gourd)
DescriptionProtein FAM227A like
LocationCucurbita_argyrosperma_scaffold_130 : 526869 .. 527396 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTCGAATCAAAACATATTGAAAACCAAATCTCAGCTGTTGATTGCAGTAGCGTTAATGGCGATGGCGACGAGACTCGTAAAAGAATCGCGACGGCCGAAATCAGGCGCGATGATGATGATGACGACGACGACGACGACGACGATGACGATGGAAAAATGGAGATCGGTAAAAAAGGCTTTGGAAAAGCGAAACAGGTGATGTTCTATCCATTTCGAAAGGCGAAGAAACAGATTCTTCGGTGTAGGATTAAGAGGACCTCTTCTTGTTCTTCTTCGATTTTTAGTATTACAAGAACAAATTCTTGGGATAAGAGTGTTTATGATGCGAGTGTAAATCAAGGCTGTGGTTTCTGTTTTGCGAAACATTCAATTTCAGATTCTAAGAATGGATCTCCGACTGATCCGAATCATCCGAAGTTCACTGATGAAATGTTGAAAGTTCTTATTGAAAAGAATGATTTCTATTCCAAAGAATCCAATCCTCATTTGGGTATATTCCTCGTTCTTCTTGTTCATATATCTTGA

mRNA sequence

ATGTTCGAATCAAAACATATTGAAAACCAAATCTCAGCTGTTGATTGCAGTAGCGTTAATGGCGATGGCGACGAGACTCGTAAAAGAATCGCGACGGCCGAAATCAGGCGCGATGATGATGATGACGACGACGACGACGACGACGATGACGATGGAAAAATGGAGATCGGTAAAAAAGGCTTTGGAAAAGCGAAACAGGTGATGTTCTATCCATTTCGAAAGGCGAAGAAACAGATTCTTCGGTGTAGGATTAAGAGGACCTCTTCTTGTTCTTCTTCGATTTTTAGTATTACAAGAACAAATTCTTGGGATAAGAGTGTTTATGATGCGAGTGTAAATCAAGGCTGTGGTTTCTGTTTTGCGAAACATTCAATTTCAGATTCTAAGAATGGATCTCCGACTGATCCGAATCATCCGAAGTTCACTGATGAAATGTTGAAAGTTCTTATTGAAAAGAATGATTTCTATTCCAAAGAATCCAATCCTCATTTGGGTATATTCCTCGTTCTTCTTGTTCATATATCTTGA

Coding sequence (CDS)

ATGTTCGAATCAAAACATATTGAAAACCAAATCTCAGCTGTTGATTGCAGTAGCGTTAATGGCGATGGCGACGAGACTCGTAAAAGAATCGCGACGGCCGAAATCAGGCGCGATGATGATGATGACGACGACGACGACGACGACGATGACGATGGAAAAATGGAGATCGGTAAAAAAGGCTTTGGAAAAGCGAAACAGGTGATGTTCTATCCATTTCGAAAGGCGAAGAAACAGATTCTTCGGTGTAGGATTAAGAGGACCTCTTCTTGTTCTTCTTCGATTTTTAGTATTACAAGAACAAATTCTTGGGATAAGAGTGTTTATGATGCGAGTGTAAATCAAGGCTGTGGTTTCTGTTTTGCGAAACATTCAATTTCAGATTCTAAGAATGGATCTCCGACTGATCCGAATCATCCGAAGTTCACTGATGAAATGTTGAAAGTTCTTATTGAAAAGAATGATTTCTATTCCAAAGAATCCAATCCTCATTTGGGTATATTCCTCGTTCTTCTTGTTCATATATCTTGA

Protein sequence

MFESKHIENQISAVDCSSVNGDGDETRKRIATAEIRRDDDDDDDDDDDDDDGKMEIGKKGFGKAKQVMFYPFRKAKKQILRCRIKRTSSCSSSIFSITRTNSWDKSVYDASVNQGCGFCFAKHSISDSKNGSPTDPNHPKFTDEMLKVLIEKNDFYSKESNPHLGIFLVLLVHIS
BLAST of Carg16439 vs. NCBI nr
Match: XP_022937511.1 (uncharacterized protein LOC111443901 [Cucurbita moschata] >XP_022937513.1 uncharacterized protein LOC111443901 [Cucurbita moschata])

HSP 1 Score: 283.5 bits (724), Expect = 4.9e-73
Identity = 161/165 (97.58%), Postives = 161/165 (97.58%), Query Frame = 0

Query: 1   MFESKHIENQISAVDCSSVNGDGDETRKRIATAE-IXXXXXXXXXXXXXXXXXKMEIGKK 60
           MFESKHIENQISAVDCSSVNGDGDE RKRIATAE  XXXXXXXXXXXXXXXXXK EIGKK
Sbjct: 1   MFESKHIENQISAVDCSSVNGDGDENRKRIATAEXXXXXXXXXXXXXXXXXXXKTEIGKK 60

Query: 61  GFGKAKQVMFYPFRKAKKQILRCRIKRTSSCSSSIFSITRTNSWDKSVYDASVNQGCGFC 120
           GFGKAKQVMFYPFRKAKKQILRCRIKRTSSCSSSIFSITRTNSWDKSVYDASVNQGCGFC
Sbjct: 61  GFGKAKQVMFYPFRKAKKQILRCRIKRTSSCSSSIFSITRTNSWDKSVYDASVNQGCGFC 120

Query: 121 FAKHSISDSKNGSPTDPNHPKFTDEMLKVLIEKNDFYSKESNPHL 165
           FAKHSISDSKNGSPTDPNHPKFTDEMLKVLIEKNDFYSKESNPHL
Sbjct: 121 FAKHSISDSKNGSPTDPNHPKFTDEMLKVLIEKNDFYSKESNPHL 165

BLAST of Carg16439 vs. NCBI nr
Match: XP_022969627.1 (uncharacterized protein LOC111468598 [Cucurbita maxima])

HSP 1 Score: 282.0 bits (720), Expect = 1.4e-72
Identity = 163/169 (96.45%), Postives = 164/169 (97.04%), Query Frame = 0

Query: 1   MFESKHIENQISAVDCSSVNGDGDETRKRIATAEI-XXXXXXXXXXXXXXXXXKMEIGKK 60
           MFESKHIENQISAVDCSSVNGDGDETRKRIATAEI XXXXXXXXXXXXXXXXXKMEIGKK
Sbjct: 1   MFESKHIENQISAVDCSSVNGDGDETRKRIATAEIXXXXXXXXXXXXXXXXXXKMEIGKK 60

Query: 61  GFGKAKQVMFYPFRKAKKQILRCRIKRTSSCSS----SIFSITRTNSWDKSVYDASVNQG 120
           GFGKAKQVMFYPFRKAKKQILRCRIKRTSSCSS    SIFSITRTNSWDKSVYDASVNQG
Sbjct: 61  GFGKAKQVMFYPFRKAKKQILRCRIKRTSSCSSXXXXSIFSITRTNSWDKSVYDASVNQG 120

Query: 121 CGFCFAKHSISDSKNGSPTDPNHPKFTDEMLKVLIEKNDFYSKESNPHL 165
           CGFCFAKHSISDSKNGSPTDPNHPKFT+EMLKVLIEKNDFYSKESNPHL
Sbjct: 121 CGFCFAKHSISDSKNGSPTDPNHPKFTNEMLKVLIEKNDFYSKESNPHL 169

BLAST of Carg16439 vs. NCBI nr
Match: XP_023537897.1 (uncharacterized protein LOC111798795 [Cucurbita pepo subsp. pepo] >XP_023537898.1 uncharacterized protein LOC111798795 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 282.0 bits (720), Expect = 1.4e-72
Identity = 163/169 (96.45%), Postives = 163/169 (96.45%), Query Frame = 0

Query: 1   MFESKHIENQISAVDCSSVNGDGDETRKRIATAEI-XXXXXXXXXXXXXXXXXKMEIGKK 60
           MFESKHIENQISAVDCSSVNGDGDE RKRIATAEI XXXXXXXXXXXXXXXXXKMEIGKK
Sbjct: 1   MFESKHIENQISAVDCSSVNGDGDEARKRIATAEIXXXXXXXXXXXXXXXXXXKMEIGKK 60

Query: 61  GFGKAKQVMFYPFRKAKKQILRCRIKRTSSCSS----SIFSITRTNSWDKSVYDASVNQG 120
           GFGKAKQVMFYPFRKAKKQILRCRIKRTSSCSS    SIFSITRTNSWDKSVYDASVNQG
Sbjct: 61  GFGKAKQVMFYPFRKAKKQILRCRIKRTSSCSSXXXXSIFSITRTNSWDKSVYDASVNQG 120

Query: 121 CGFCFAKHSISDSKNGSPTDPNHPKFTDEMLKVLIEKNDFYSKESNPHL 165
           CGFCFAKHSISDSKNGSPTDPNHPKFTDEMLKVLIEKNDFYSKESNPHL
Sbjct: 121 CGFCFAKHSISDSKNGSPTDPNHPKFTDEMLKVLIEKNDFYSKESNPHL 169

BLAST of Carg16439 vs. NCBI nr
Match: XP_008452984.1 (PREDICTED: uncharacterized protein LOC103493824 [Cucumis melo])

HSP 1 Score: 187.6 bits (475), Expect = 3.7e-44
Identity = 105/175 (60.00%), Postives = 111/175 (63.43%), Query Frame = 0

Query: 1   MFESKHIENQISAVDCSSVNGDGDETRKRIATAEIXXXXXXXXXXXXXXXXXKMEIGKKG 60
           M ES+H EN IS V CS VN                                KME+GKKG
Sbjct: 1   MLESRHAENNISDVGCSGVNXXXXXXXXXXXNT----MAKTQIRDDEFDDDRKMEMGKKG 60

Query: 61  FGKAKQVMFYPFRKAKKQILRCRIKRTSSCS---------SSIFSITRTNSWDKSVYDAS 120
           FGKAKQVMFYPFRKAKKQILR RIKR SSCS           +    RTNS DK  +D S
Sbjct: 61  FGKAKQVMFYPFRKAKKQILRRRIKRGSSCSXXXXXXXXXXXVICSRRTNSLDKRGFDGS 120

Query: 121 VNQGCGFCFAKHSISDSKNGSPTDPNHPKFTDEMLKVLIEKNDFYSKESNPHLGI 167
           VNQGCGFC  K SISDSKNGSPTDPNH KFT+EMLKVLIEKNDFYSKESNPHL +
Sbjct: 121 VNQGCGFCLTKLSISDSKNGSPTDPNHRKFTNEMLKVLIEKNDFYSKESNPHLDV 171

BLAST of Carg16439 vs. NCBI nr
Match: XP_004144798.2 (PREDICTED: uncharacterized protein LOC101216013 [Cucumis sativus] >XP_011648888.1 PREDICTED: uncharacterized protein LOC101216013 [Cucumis sativus] >KGN61038.1 hypothetical protein Csa_2G035380 [Cucumis sativus])

HSP 1 Score: 181.4 bits (459), Expect = 2.6e-42
Identity = 101/169 (59.76%), Postives = 107/169 (63.31%), Query Frame = 0

Query: 1   MFESKHIENQISAVDCSSVNGDGDETRKRIATAEIXXXXXXXXXXXXXXXXXKMEIGKKG 60
           M ES+H EN IS V CS VN                                KME+GKKG
Sbjct: 1   MLESRHAENNISDVGCSGVNXXXXXXXXXXXNT----MAKTQIRDDEFDDDRKMEMGKKG 60

Query: 61  FGKAKQVMFYPFRKAKKQILRCRIKRTSSCSSSIFSIT---RTNSWDKSVYDASVNQGCG 120
           FGKAKQVMFYPFRKAKKQILR RIKR          +T   RTNS DK  +D SVNQGCG
Sbjct: 61  FGKAKQVMFYPFRKAKKQILRRRIKRDXXXXXXXXXVTCSRRTNSLDKRGFDGSVNQGCG 120

Query: 121 FCFAKHSISDSKNGSPTDPNHPKFTDEMLKVLIEKNDFYSKESNPHLGI 167
           FC  K SISDSKNGSPTDPNH KFT+EMLKVLIEKNDFYSKESNPH  +
Sbjct: 121 FCLTKLSISDSKNGSPTDPNHRKFTNEMLKVLIEKNDFYSKESNPHFDV 165

BLAST of Carg16439 vs. TAIR10
Match: AT5G26720.1 (unknown protein)

HSP 1 Score: 45.1 bits (105), Expect = 5.3e-05
Identity = 21/38 (55.26%), Postives = 27/38 (71.05%), Query Frame = 0

Query: 127 DSKNGSP-TDPNHPKFTDEMLKVLIEKNDFYSKESNPH 164
           DS   SP +DPN  +F+ EML+V++E NDF S E NPH
Sbjct: 96  DSSVSSPVSDPNDERFSHEMLRVMLETNDFCSDECNPH 133

BLAST of Carg16439 vs. TrEMBL
Match: tr|A0A1S3BWA1|A0A1S3BWA1_CUCME (uncharacterized protein LOC103493824 OS=Cucumis melo OX=3656 GN=LOC103493824 PE=4 SV=1)

HSP 1 Score: 187.6 bits (475), Expect = 2.4e-44
Identity = 105/175 (60.00%), Postives = 111/175 (63.43%), Query Frame = 0

Query: 1   MFESKHIENQISAVDCSSVNGDGDETRKRIATAEIXXXXXXXXXXXXXXXXXKMEIGKKG 60
           M ES+H EN IS V CS VN                                KME+GKKG
Sbjct: 1   MLESRHAENNISDVGCSGVNXXXXXXXXXXXNT----MAKTQIRDDEFDDDRKMEMGKKG 60

Query: 61  FGKAKQVMFYPFRKAKKQILRCRIKRTSSCS---------SSIFSITRTNSWDKSVYDAS 120
           FGKAKQVMFYPFRKAKKQILR RIKR SSCS           +    RTNS DK  +D S
Sbjct: 61  FGKAKQVMFYPFRKAKKQILRRRIKRGSSCSXXXXXXXXXXXVICSRRTNSLDKRGFDGS 120

Query: 121 VNQGCGFCFAKHSISDSKNGSPTDPNHPKFTDEMLKVLIEKNDFYSKESNPHLGI 167
           VNQGCGFC  K SISDSKNGSPTDPNH KFT+EMLKVLIEKNDFYSKESNPHL +
Sbjct: 121 VNQGCGFCLTKLSISDSKNGSPTDPNHRKFTNEMLKVLIEKNDFYSKESNPHLDV 171

BLAST of Carg16439 vs. TrEMBL
Match: tr|A0A0A0LH19|A0A0A0LH19_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G035380 PE=4 SV=1)

HSP 1 Score: 181.4 bits (459), Expect = 1.7e-42
Identity = 101/169 (59.76%), Postives = 107/169 (63.31%), Query Frame = 0

Query: 1   MFESKHIENQISAVDCSSVNGDGDETRKRIATAEIXXXXXXXXXXXXXXXXXKMEIGKKG 60
           M ES+H EN IS V CS VN                                KME+GKKG
Sbjct: 1   MLESRHAENNISDVGCSGVNXXXXXXXXXXXNT----MAKTQIRDDEFDDDRKMEMGKKG 60

Query: 61  FGKAKQVMFYPFRKAKKQILRCRIKRTSSCSSSIFSIT---RTNSWDKSVYDASVNQGCG 120
           FGKAKQVMFYPFRKAKKQILR RIKR          +T   RTNS DK  +D SVNQGCG
Sbjct: 61  FGKAKQVMFYPFRKAKKQILRRRIKRDXXXXXXXXXVTCSRRTNSLDKRGFDGSVNQGCG 120

Query: 121 FCFAKHSISDSKNGSPTDPNHPKFTDEMLKVLIEKNDFYSKESNPHLGI 167
           FC  K SISDSKNGSPTDPNH KFT+EMLKVLIEKNDFYSKESNPH  +
Sbjct: 121 FCLTKLSISDSKNGSPTDPNHRKFTNEMLKVLIEKNDFYSKESNPHFDV 165

BLAST of Carg16439 vs. TrEMBL
Match: tr|A0A2N9FR33|A0A2N9FR33_FAGSY (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS17096 PE=4 SV=1)

HSP 1 Score: 89.7 bits (221), Expect = 6.9e-15
Identity = 51/107 (47.66%), Postives = 65/107 (60.75%), Query Frame = 0

Query: 59  KGFGKAKQVMFYPFRKAKKQILRCRIKRTSSCSSSIFSITRTNSWDKSVYDASVNQGCGF 118
           + F KAKQV+ +PF K K+Q+LR + KR SS +      T +    K     +  +GC F
Sbjct: 58  RSFTKAKQVVLHPFTKFKRQLLRRKNKRASSSAD-----TNSRISGKRFCCVNGGKGCYF 117

Query: 119 CFAKHSISDSKNGS-PTDPNHPKFTDEMLKVLIEKNDFYSKESNPHL 165
           CF +    +S +GS  TDPN P FT +MLKV IE NDFYSKE NPHL
Sbjct: 118 CFKQPQTFESNSGSRTTDPNDPNFTYDMLKVFIENNDFYSKECNPHL 159

BLAST of Carg16439 vs. TrEMBL
Match: tr|M5WD38|M5WD38_PRUPE (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_6G302400 PE=4 SV=1)

HSP 1 Score: 80.1 bits (196), Expect = 5.4e-12
Identity = 48/109 (44.04%), Postives = 61/109 (55.96%), Query Frame = 0

Query: 61  FGKAKQVMFYPFRKAKKQILRCRIKRTSSCSSSIFSITRTNSWDK--SVYDASVNQGCGF 120
           FGKAKQV+ +PF ++KKQ+ R    R SS               +  +  +   N+GC F
Sbjct: 60  FGKAKQVVLHPFTRSKKQLPRKDKTRASSAXXXXXXXXXXXXGKRFGAGVNGGGNKGCYF 119

Query: 121 CFAKHSISDSKNGSPT-DPNHPKFTDEMLKVLIEKNDFYSKESNPHLGI 167
           CF + S   S  GS T DP HP FT  ML+  +EKNDF+SKE NPHL I
Sbjct: 120 CFTQPSTPGSPIGSQTSDPEHPNFTFGMLRDFMEKNDFFSKECNPHLDI 168

BLAST of Carg16439 vs. TrEMBL
Match: tr|A0A1S3TN76|A0A1S3TN76_VIGRR (uncharacterized protein LOC106757138 OS=Vigna radiata var. radiata OX=3916 GN=LOC106757138 PE=4 SV=1)

HSP 1 Score: 80.1 bits (196), Expect = 5.4e-12
Identity = 48/113 (42.48%), Postives = 63/113 (55.75%), Query Frame = 0

Query: 60  GFGKAKQVMFYPFRKAKKQILRCRIKRTSSCSS-------SIFSITRTNSWDKSVYDASV 119
           GFGK   V+ + F KAKKQI R R +++    S        +  +    S  +       
Sbjct: 43  GFGK---VVVHQFAKAKKQIRRVRSRKSLLAKSHPGNEEGKVIVVAGDGSGGR-----RR 102

Query: 120 NQGCGFCFAKHSISDSKNGSPT-DPNHPKFTDEMLKVLIEKNDFYSKESNPHL 165
             GCGFCF++  + +S N SPT DPN P FT  ML+ L++KNDFYSKE NPHL
Sbjct: 103 GNGCGFCFSRPKVLESPNESPTSDPNDPNFTQAMLRTLMDKNDFYSKECNPHL 147

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_022937511.14.9e-7397.58uncharacterized protein LOC111443901 [Cucurbita moschata] >XP_022937513.1 unchar... [more]
XP_022969627.11.4e-7296.45uncharacterized protein LOC111468598 [Cucurbita maxima][more]
XP_023537897.11.4e-7296.45uncharacterized protein LOC111798795 [Cucurbita pepo subsp. pepo] >XP_023537898.... [more]
XP_008452984.13.7e-4460.00PREDICTED: uncharacterized protein LOC103493824 [Cucumis melo][more]
XP_004144798.22.6e-4259.76PREDICTED: uncharacterized protein LOC101216013 [Cucumis sativus] >XP_011648888.... [more]
Match NameE-valueIdentityDescription
AT5G26720.15.3e-0555.26unknown protein[more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
tr|A0A1S3BWA1|A0A1S3BWA1_CUCME2.4e-4460.00uncharacterized protein LOC103493824 OS=Cucumis melo OX=3656 GN=LOC103493824 PE=... [more]
tr|A0A0A0LH19|A0A0A0LH19_CUCSA1.7e-4259.76Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G035380 PE=4 SV=1[more]
tr|A0A2N9FR33|A0A2N9FR33_FAGSY6.9e-1547.66Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS17096 PE=4 SV=1[more]
tr|M5WD38|M5WD38_PRUPE5.4e-1244.04Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_6G302400 PE=4 SV=1[more]
tr|A0A1S3TN76|A0A1S3TN76_VIGRR5.4e-1242.48uncharacterized protein LOC106757138 OS=Vigna radiata var. radiata OX=3916 GN=LO... [more]
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg16439-RACarg16439-RAmRNA


Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 21..36
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 37..51
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..57
NoneNo IPR availablePANTHERPTHR35123:SF2SUBFAMILY NOT NAMEDcoord: 7..164
NoneNo IPR availablePANTHERPTHR35123FAMILY NOT NAMEDcoord: 7..164