Carg16414 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg16414
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	transmembrane protein 208 homolog
Location	Cucurbita_argyrosperma_scaffold_130 : 299176 .. 302453 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATTTAGGATTCGACCCTCCCCGATGAACACCTGAAGTCCTTCTTCCTCTTCAGTTCATCCTGAATTTCAGATACCCACCCCTAACTGACCTAGATTTTACTCCCATTTCACAAGCAGTTTCGGAATCCGGCGACAAAGATGGCAAACCAAGGTGCAAAGAAGCGCAAGGAGGAGAACGCTCGTCATATGGCCAATCTCCGCCGCCTCATCATTGCATGCAATGTAAGGACTTCTTTTCGATCACTTCTCTCTATTTTTCTTCTCTCTTATGTCCGTAAATCATCCTTGTTGCTGATTTAGTATTCGCGTTGTAATTCTCTTGGAATTCTGGGCTGGAAGAAGTTGTAGGATGGTGTGTTTGTTACAAACAATCAACCATCTACTGGAAATTGTAATTTATCAGATAGGTTTAGATTCTGTTGGAAGCAAAGAAAATTTCATACTGTAAACATCCAATACTGGTAGATTTTATTTGCTTATTTATTATTCTTAGGTAAAAATCCGGAATTCTTGTTTTCCAAATTTGACTTGAAAATTGAAGTTGCGGCAGATACAGACGATTGTGCACGAGGAACATTGGAATGCAAGGTCGAGGAAGATCTCGAGTAATTTCTTCAGAGGAATATGAGATAACTAAAAAATTGAAGGATGGGAGAATTAGTTTTAGATTGTATATGTTTTGCAGTAAGTTTAGAGGTTATTTTGGTTTGTAAGTTCTTGTTTAGGATAGTTAAATCTTTTCTTAAGAGTTGTCAAAGGGATAAGCACCCTTCTGAGCATATCCTGAAACATCATCATATCATTTATTCATACAGCCTAAGAGGGCCGTGTGTCTTTGTGGAACTGGTATGACTTCATTGTTTTGTTCTTAGACTTTAACTTGAATTGTTTATGCAGGCTACCTATATTTTGGTTCGGATGCTGATTTTTCATTCAAGTTTCACTTGGAAACATTGGATTGGTTTGATTGTCACATCCGCAGCTTATTTTATTCCTTACAACCAACTTTCCAACATGGCAAACCCAACCTATGGTGATGAAGGTGAACTACTAGATGGTGGATTTGATATGAATACTGGTGGAATTTGTGGGTATGTCTTTAGTCTTCTTAATGTTTATCATTGCCTGTCAGTTTTATGCATGTTTTATCTTCTATATGAAGTATAATCGTTGAATACAGATCTGACATATTTAATTGTTCTAATGACAAAATTTTAAGTGAAACCAAGCTTTTAAACTTGCTAAGAATTGGTATGATATTGTTCACCTTAGATCAAATTTTTTGAGGAAGCTGGAGCTATTTTTCCTGGTTGTCATTCCAAAATTCAGTGCTAAGTGATTGAAATGGAAGGGTCTAGTGATGTGCGCGGCAGCATACTCTGGATATGATTTCCTCTCCTTCTGGATTTTATGACTGAAATCATTTGTAGCATTGTCAATTCATATTCAGTATACTTGTCAATTGGCTTAATATCTCTCGATAATAGCAATGTCCTTAATCATCATGGTGGTTTGGTCAGCTTCTTTACTGGTTATCTTTGAATTTTCTTTCTCAAGGAGATTTCAAATAGGATATAGACACGCACTTGCAGCTTAAGAATGTTTGGGGTTGTAAGTTTTTTGGGGAAATGGTCCTGCTCCATTGATTGCTTTGATCAATTGATGTGTTGGTTTGATCATCAAAGTGACAAGTAAGTCCATGCTATGTTTTTGACCTGACAAAATATTAGGTGTTGTGGGGGTTTATCTATTTGGTTGTAAAGGTGGTGAACGTGGGAGCGAGATTGGGGTTAAATCATTTCATTCGGGTGGTTCTAGTTTAAGATGATTAATTGTCAGGATTTTAAAAATAGCTAAAGTTAAATTTTATCTCTGAATTTGAAAAAGTTGCATTTTCATGTTTCACTGCTTTCTCCTCTGAACTGGACAGAACCCTAATGGTGAAATACAGTGTAGTGCTTGCCAAGGCCACATTTCAGGCCATCAGACCTGCAACTGAATGTTGTTTCTTGTGTGCCTTGTAATTTATATGGTAATTTAAATCTCATTGTAGCAACAAGGAGCTCTAGTGTTTTTATAATAATTCTAAAGTAATTGACTTCAAAGCTATACTAGTTGTGAACCCATATGTCCATATGGCTACATGTTCTTTGAAGCCTCACGGCATTGACATTAGGTGAAGGACTCACCTAGGACAGTTGCCAGTTCCATATAGCGATTGTTAGATCGTCAAAACTTGTATCGTAAACGTTTTCTTGGCATTTGAACAATTAATCGAAACATCTTGATGGGTTGTCTTGTTTTGTGCAGCTACTTGCATGACATGATCTACATTACAAGCTTTGTGCAAATAATGTCAATCCTCTCTGGGAAGTTCTGGTACACCTACCTTATGGTAAGATCCAAATACTTCTGAAATTGAACTTAGACATATTTAGTGCAATATAACCTAGGCCTAATCCCGATTTTTGGGCGTGAAATAATGTCAATGATGTATCTTTCTGAAATGACTTTAATTGTACATCTATTTATAAACGCGTATCTATCTCTAAACATTATTTTTCGTGTTACCTCTATTACTAAATATTTGTGCAACTAAAGAAATTCAAAATAAATACGCCATATGACCAACAAGTTAAAGTAGGCATACTTCACTAGTTCTTAATAATTCATTTCCTCATTGCTATGCAGATTCCAGCATTTGGGATATACAAATCTTCTGGTTTAATTAAGGGATTATTGTCGCAAGGTTCAGAGGTAATCAAACCCGGACCAGACCTGCTTTCTTTATTTAGTTAGGCCCGGTCTTCTCTTTTCATTTAGGCGTATACTTGCGTGTCGATTAGGATGAACCTGAGGACGAGAAGACTCGCAAGAAGAGGGAAAAGATGGAGAAGAAAGCTTCAAGGGTGAAGTTTGTAAAGACCAAGAATAGATAATCTTCTCTTCAACATTAAACGGAATCAAGTGGGTGCAATCAACTTAAGTTATCGGATTCAAATTCGAGCAGATGGACCACAGACACGGTCGAGATTTAGGTACCACATGAAGTTGGTTTGAGTGAGAAGTTTGTGTATTGATCTGACTACTTTTATCAGGAATAAGGGGCAAAAGTATATGATTGTAACAACCTCCATTCTGTCAACGGAGCATTTAGAAGTGTCCCTGTTTCCTCTTTCAAAATGACATCACAGGTACACAACTTTTGCTGCTTTGATTTCATTTAGAAGAGACAGATCTAGGAGAGGGATATCAAAGCAATAGTTTAAATCCCTTTT

mRNA sequence

ATTTAGGATTCGACCCTCCCCGATGAACACCTGAAGTCCTTCTTCCTCTTCAGTTCATCCTGAATTTCAGATACCCACCCCTAACTGACCTAGATTTTACTCCCATTTCACAAGCAGTTTCGGAATCCGGCGACAAAGATGGCAAACCAAGGTGCAAAGAAGCGCAAGGAGGAGAACGCTCGTCATATGGCCAATCTCCGCCGCCTCATCATTGCATGCAATGCTACCTATATTTTGGTTCGGATGCTGATTTTTCATTCAAGTTTCACTTGGAAACATTGGATTGGTTTGATTGTCACATCCGCAGCTTATTTTATTCCTTACAACCAACTTTCCAACATGGCAAACCCAACCTATGGTGATGAAGGTGAACTACTAGATGGTGGATTTGATATGAATACTGGTGGAATTTGTGGCTACTTGCATGACATGATCTACATTACAAGCTTTGTGCAAATAATGTCAATCCTCTCTGGGAAGTTCTGGTACACCTACCTTATGATTCCAGCATTTGGGATATACAAATCTTCTGGTTTAATTAAGGGATTATTGTCGCAAGGTTCAGAGGATGAACCTGAGGACGAGAAGACTCGCAAGAAGAGGGAAAAGATGGAGAAGAAAGCTTCAAGGGTGAAGTTTGTAAAGACCAAGAATAGATAATCTTCTCTTCAACATTAAACGGAATCAAGTGGGTGCAATCAACTTAAGTTATCGGATTCAAATTCGAGCAGATGGACCACAGACACGGTCGAGATTTAGGTACCACATGAAGTTGGTTTGAGTGAGAAGTTTGTGTATTGATCTGACTACTTTTATCAGGAATAAGGGGCAAAAGTATATGATTGTAACAACCTCCATTCTGTCAACGGAGCATTTAGAAGTGTCCCTGTTTCCTCTTTCAAAATGACATCACAGGTACACAACTTTTGCTGCTTTGATTTCATTTAGAAGAGACAGATCTAGGAGAGGGATATCAAAGCAATAGTTTAAATCCCTTTT

Coding sequence (CDS)

ATGGCAAACCAAGGTGCAAAGAAGCGCAAGGAGGAGAACGCTCGTCATATGGCCAATCTCCGCCGCCTCATCATTGCATGCAATGCTACCTATATTTTGGTTCGGATGCTGATTTTTCATTCAAGTTTCACTTGGAAACATTGGATTGGTTTGATTGTCACATCCGCAGCTTATTTTATTCCTTACAACCAACTTTCCAACATGGCAAACCCAACCTATGGTGATGAAGGTGAACTACTAGATGGTGGATTTGATATGAATACTGGTGGAATTTGTGGCTACTTGCATGACATGATCTACATTACAAGCTTTGTGCAAATAATGTCAATCCTCTCTGGGAAGTTCTGGTACACCTACCTTATGATTCCAGCATTTGGGATATACAAATCTTCTGGTTTAATTAAGGGATTATTGTCGCAAGGTTCAGAGGATGAACCTGAGGACGAGAAGACTCGCAAGAAGAGGGAAAAGATGGAGAAGAAAGCTTCAAGGGTGAAGTTTGTAAAGACCAAGAATAGATAA

Protein sequence

MANQGAKKRKEENARHMANLRRLIIACNATYILVRMLIFHSSFTWKHWIGLIVTSAAYFIPYNQLSNMANPTYGDEGELLDGGFDMNTGGICGYLHDMIYITSFVQIMSILSGKFWYTYLMIPAFGIYKSSGLIKGLLSQGSEDEPEDEKTRKKREKMEKKASRVKFVKTKNR

Homology

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BLAST of Carg16414 vs. NCBI nr
Match: XP_022937469.1 (transmembrane protein 208 homolog [Cucurbita moschata])

HSP 1 Score: 307.0 bits (785), Expect = 4.1e-80
Identity = 171/173 (98.84%), Postives = 173/173 (100.00%), Query Frame = 0


Query: 1   MANQGAKKRKEENARHMANLRRLIIACNATYILVRMLIFHSSFTWKHWIGLIVTSAAYFI 60
           MANQGAKKRKEENARHMANLRRLIIACNATYILVRMLIFHSSFTWKHWIGLIVTSAAYFI
Sbjct: 1   MANQGAKKRKEENARHMANLRRLIIACNATYILVRMLIFHSSFTWKHWIGLIVTSAAYFI 60

Query: 61  PYNQLSNMANPTYGDEGELLDGGFDMNTGGICGYLHDMIYITSFVQIMSILSGKFWYTYL 120
           PYNQLSNMANPTYGDEGELLDGGFDMNTGGICGYLHDMIYITSFVQIMSILSGKFWYTYL
Sbjct: 61  PYNQLSNMANPTYGDEGELLDGGFDMNTGGICGYLHDMIYITSFVQIMSILSGKFWYTYL 120

Query: 121 MIPAFGIYKSSGLIKGLLSQGSEDEPXXXXXXXXXXXXXXXXXXVKFVKTKNR 174
           +IPAFG+YKSSGLIKGLLSQGSEDEPXXXXXXXXXXXXXXXXXXVKFVKTKNR
Sbjct: 121 VIPAFGVYKSSGLIKGLLSQGSEDEPXXXXXXXXXXXXXXXXXXVKFVKTKNR 173

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BLAST of Carg16414 vs. NCBI nr
Match: XP_023536815.1 (transmembrane protein 208 homolog [Cucurbita pepo subsp. pepo])

HSP 1 Score: 305.4 bits (781), Expect = 1.2e-79
Identity = 170/173 (98.27%), Postives = 172/173 (99.42%), Query Frame = 0


Query: 1   MANQGAKKRKEENARHMANLRRLIIACNATYILVRMLIFHSSFTWKHWIGLIVTSAAYFI 60
           MANQGAKKRKEENARHMANLRRLIIACN TYILVRMLIFHSSFTWKHWIGLIVTSAAYFI
Sbjct: 1   MANQGAKKRKEENARHMANLRRLIIACNTTYILVRMLIFHSSFTWKHWIGLIVTSAAYFI 60

Query: 61  PYNQLSNMANPTYGDEGELLDGGFDMNTGGICGYLHDMIYITSFVQIMSILSGKFWYTYL 120
           PYNQLSNMANPTYGDEGELLDGGFDMNTGGICGYLHDMIYITSFVQIMSILSGKFWYTYL
Sbjct: 61  PYNQLSNMANPTYGDEGELLDGGFDMNTGGICGYLHDMIYITSFVQIMSILSGKFWYTYL 120

Query: 121 MIPAFGIYKSSGLIKGLLSQGSEDEPXXXXXXXXXXXXXXXXXXVKFVKTKNR 174
           +IPAFG+YKSSGLIKGLLSQGSEDEPXXXXXXXXXXXXXXXXXXVKFVKTKNR
Sbjct: 121 VIPAFGVYKSSGLIKGLLSQGSEDEPXXXXXXXXXXXXXXXXXXVKFVKTKNR 173

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BLAST of Carg16414 vs. NCBI nr
Match: XP_022969670.1 (transmembrane protein 208 homolog [Cucurbita maxima])

HSP 1 Score: 303.1 bits (775), Expect = 5.9e-79
Identity = 169/173 (97.69%), Postives = 171/173 (98.84%), Query Frame = 0


Query: 1   MANQGAKKRKEENARHMANLRRLIIACNATYILVRMLIFHSSFTWKHWIGLIVTSAAYFI 60
           MANQGAKKRKEENARHMANLRRLIIACNATYILVRMLIFHSSFTWKHWIGLIVTSAAYFI
Sbjct: 1   MANQGAKKRKEENARHMANLRRLIIACNATYILVRMLIFHSSFTWKHWIGLIVTSAAYFI 60

Query: 61  PYNQLSNMANPTYGDEGELLDGGFDMNTGGICGYLHDMIYITSFVQIMSILSGKFWYTYL 120
           PYNQLSNM  PTYGDEGELLDGGFDMNTGGICGYLHDMIYITSFVQIMSILSGKFWYTYL
Sbjct: 61  PYNQLSNMGTPTYGDEGELLDGGFDMNTGGICGYLHDMIYITSFVQIMSILSGKFWYTYL 120

Query: 121 MIPAFGIYKSSGLIKGLLSQGSEDEPXXXXXXXXXXXXXXXXXXVKFVKTKNR 174
           +IPAFG+YKSSGLIKGLLSQGSEDEPXXXXXXXXXXXXXXXXXXVKFVKTKNR
Sbjct: 121 VIPAFGVYKSSGLIKGLLSQGSEDEPXXXXXXXXXXXXXXXXXXVKFVKTKNR 173

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BLAST of Carg16414 vs. NCBI nr
Match: XP_022946520.1 (transmembrane protein 208 homolog [Cucurbita moschata] >XP_022999772.1 transmembrane protein 208 homolog [Cucurbita maxima])

HSP 1 Score: 286.6 bits (732), Expect = 5.7e-74
Identity = 155/173 (89.60%), Postives = 165/173 (95.38%), Query Frame = 0


Query: 1   MANQGAKKRKEENARHMANLRRLIIACNATYILVRMLIFHSSFTWKHWIGLIVTSAAYFI 60
           MANQGAKKRKEENARHMANLRRLIIACN  YILVRMLIFHSSFTWKHW+GLIVTSAAYFI
Sbjct: 1   MANQGAKKRKEENARHMANLRRLIIACNVIYILVRMLIFHSSFTWKHWVGLIVTSAAYFI 60

Query: 61  PYNQLSNMANPTYGDEGELLDGGFDMNTGGICGYLHDMIYITSFVQIMSILSGKFWYTYL 120
           PYNQL+ MA+PTYGD+GELLDGGFDM+TGGICGY+HD+IYITSFVQIMSILSGKFWYTYL
Sbjct: 61  PYNQLAKMADPTYGDDGELLDGGFDMSTGGICGYMHDVIYITSFVQIMSILSGKFWYTYL 120

Query: 121 MIPAFGIYKSSGLIKGLLSQGSEDEPXXXXXXXXXXXXXXXXXXVKFVKTKNR 174
           +IPAFG+YKSSGLIK LLS GSEDEP XXXXXXXXXXXXXXX  VKF+KTKNR
Sbjct: 121 VIPAFGVYKSSGLIKSLLSHGSEDEPEXXXXXXXXXXXXXXXSRVKFMKTKNR 173

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BLAST of Carg16414 vs. NCBI nr
Match: XP_008452429.1 (PREDICTED: transmembrane protein 208 homolog [Cucumis melo])

HSP 1 Score: 286.2 bits (731), Expect = 7.5e-74
Identity = 159/173 (91.91%), Postives = 166/173 (95.95%), Query Frame = 0


Query: 1   MANQGAKKRKEENARHMANLRRLIIACNATYILVRMLIFHSSFTWKHWIGLIVTSAAYFI 60
           MANQGAKKRKEENARHMANLRRLIIACN  YILVRMLIFHSSFTWKHWIGLIVTS AYFI
Sbjct: 1   MANQGAKKRKEENARHMANLRRLIIACNVIYILVRMLIFHSSFTWKHWIGLIVTSVAYFI 60

Query: 61  PYNQLSNMANPTYGDEGELLDGGFDMNTGGICGYLHDMIYITSFVQIMSILSGKFWYTYL 120
           PYNQL  MA PTYGD+GELLDGGFDM+T GICGY+HD+IYITSFVQIMSILSGKFWYTYL
Sbjct: 61  PYNQLEKMAKPTYGDDGELLDGGFDMSTDGICGYMHDVIYITSFVQIMSILSGKFWYTYL 120

Query: 121 MIPAFGIYKSSGLIKGLLSQGSEDEPXXXXXXXXXXXXXXXXXXVKFVKTKNR 174
           +IPAFG+YKSSGLI+GLLSQGSEDEPXXXXXXXXXXXXXXXXXXVKFVKTKNR
Sbjct: 121 VIPAFGVYKSSGLIRGLLSQGSEDEPXXXXXXXXXXXXXXXXXXVKFVKTKNR 173

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BLAST of Carg16414 vs. TAIR10
Match: AT2G23940.1 (Protein of unknown function (DUF788))

HSP 1 Score: 233.4 bits (594), Expect = 1.0e-61
Identity = 108/143 (75.52%), Postives = 126/143 (88.11%), Query Frame = 0


Query: 1   MANQGAKKRKEENARHMANLRRLIIACNATYILVRMLIFHSSFTWKHWIGLIVTSAAYFI 60
           MANQGAKKRKEENA+HMA LRR+IIA NA Y +VRMLIF+SSFTWKHWIGL++TS AY  
Sbjct: 1   MANQGAKKRKEENAKHMAKLRRIIIASNAVYFVVRMLIFYSSFTWKHWIGLVITSLAYAF 60

Query: 61  PYNQLSNMANPTYGDEGELLDGGFDMNTGGICGYLHDMIYITSFVQIMSILSGKFWYTYL 120
           PY QL  MA P+  D+GEL+DGGFDM TGGICGYLHD+IYIT FVQ+ SI++GKFWYTYL
Sbjct: 61  PYKQLDQMAKPSVTDDGELIDGGFDMTTGGICGYLHDVIYITCFVQLASIITGKFWYTYL 120

Query: 121 MIPAFGIYKSSGLIKGLLSQGSE 144
           +IPAFG+YK+SGLI+G +SQGSE
Sbjct: 121 VIPAFGVYKASGLIRGFMSQGSE 143

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BLAST of Carg16414 vs. TAIR10
Match: AT4G30500.1 (Protein of unknown function (DUF788))

HSP 1 Score: 213.4 bits (542), Expect = 1.1e-55
Identity = 101/143 (70.63%), Postives = 119/143 (83.22%), Query Frame = 0


Query: 1   MANQGAKKRKEENARHMANLRRLIIACNATYILVRMLIFHSSFTWKHWIGLIVTSAAYFI 60
           MANQGAKKRK+ENARHMA LR ++I CN  Y+LVR++I HSS TWK+WIGL++TS  Y I
Sbjct: 1   MANQGAKKRKDENARHMAKLRLIMILCNILYVLVRVIISHSSHTWKNWIGLVLTSLGYGI 60

Query: 61  PYNQLSNMANPTYGDEGELLDGGFDMNTGGICGYLHDMIYITSFVQIMSILSGKFWYTYL 120
           PY  L  MA P+  D GELLDGGFDM+T G+CGYLHD++YIT FVQ+ SI+SGKFWY YL
Sbjct: 61  PYKLLHQMAKPSVSDAGELLDGGFDMSTPGMCGYLHDVLYITCFVQVGSIISGKFWYAYL 120

Query: 121 MIPAFGIYKSSGLIKGLLSQGSE 144
           +IPAFG YK+SGLIKGLLS GSE
Sbjct: 121 VIPAFGAYKASGLIKGLLSHGSE 143

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BLAST of Carg16414 vs. Swiss-Prot
Match: sp|Q6NYP0|TM208_DANRE (Transmembrane protein 208 OS=Danio rerio OX=7955 GN=tmem208 PE=2 SV=1)

HSP 1 Score: 92.8 bits (229), Expect = 4.0e-18
Identity = 48/129 (37.21%), Postives = 77/129 (59.69%), Query Frame = 0


Query: 1   MANQGAKKRKEENARHMANLRRLIIACNATYILVRMLIFHSSFTWKHWIGLIVTSAAYFI 60
           +  +G K+  EEN   +    R+I+  NA YI V +L+F++S ++  W  L+   A Y  
Sbjct: 7   VGTKGKKQIHEENQDTLKFYSRIILGANAIYIAVNLLLFYNSSSFWTWFSLMFAVAVYVG 66

Query: 61  PYNQLSNMANPTYGDEGELLDGGFDMN-TGGICGYLHDMIYITSFVQIMSILSGKFWYTY 120
            Y  +S MA P + ++G LLDGG D+N   G+  +L D+I +T+ VQ++S LS  FWY +
Sbjct: 67  SYRSMSAMAKPAFAEDGSLLDGGIDLNMEQGMAEHLKDVILLTAIVQVLSTLSSYFWYLW 126

Query: 121 LMIPAFGIY 129
           L+ PA  ++
Sbjct: 127 LLAPARALH 135

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BLAST of Carg16414 vs. Swiss-Prot
Match: sp|Q54UB0|TM208_DICDI (Transmembrane protein 208 homolog OS=Dictyostelium discoideum OX=44689 GN=tmem208 PE=3 SV=1)

HSP 1 Score: 91.7 bits (226), Expect = 8.8e-18
Identity = 48/129 (37.21%), Postives = 74/129 (57.36%), Query Frame = 0


Query: 1   MANQGAKKRKEENARHMANLRRLIIACNATYILVRMLIFHSSFTWKHWIGLIVTSAAYFI 60
           MAN GAKKRK +N + +  +R ++ A    YIL R++    +F    W   +  +A    
Sbjct: 1   MANSGAKKRKTQNEKELFKVRLIMAAGTIPYILYRVVYHSETFGGWLWFAYLSLNALNMF 60

Query: 61  PYNQLSNMANPTYGDEGELLDGGFDMNTGGICGYLHDMIYITSFVQIMSILSGKFWYTYL 120
            Y  +++M   TY + GEL+DGG D+N GG+  Y  D+IY+   +Q + ++S K  Y  L
Sbjct: 61  AYYIITSMCKLTYDNNGELIDGGSDLNQGGMTEYYFDIIYVCCIIQGLGLISDKCLYLIL 120

Query: 121 MIPAFGIYK 130
           +IPAF I+K
Sbjct: 121 VIPAFAIFK 129

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BLAST of Carg16414 vs. Swiss-Prot
Match: sp|Q3SZZ5|TM208_BOVIN (Transmembrane protein 208 OS=Bos taurus OX=9913 GN=TMEM208 PE=2 SV=1)

HSP 1 Score: 82.0 bits (201), Expect = 7.0e-15
Identity = 43/129 (33.33%), Postives = 76/129 (58.91%), Query Frame = 0


Query: 1   MANQGAKKRKEENARHMANLRRLIIACNATYILVRMLIFHSSFTWKHWIGLIVTSAAYFI 60
           +  +G K+  EEN   +    R+I+  NA Y LV +++F+SS ++  W+ L+ + A Y  
Sbjct: 7   VGTRGKKQIFEENKETLKFYLRIILGANAIYCLVTLVVFYSSASFWAWMALLFSLAVYGA 66

Query: 61  PYNQLSNMANPTYGDEGELLDGGFDMN-TGGICGYLHDMIYITSFVQIMSILSGKFWYTY 120
            Y+ +S+MA   + ++G L+DGG D+N   G+  +L D+I +T+ VQ++S  S   W  +
Sbjct: 67  SYHSMSSMARAAFSEDGALVDGGMDLNMEQGMAEHLKDVILLTAIVQVLSCFSLYIWSFW 126

Query: 121 LMIPAFGIY 129
           L+ P   +Y
Sbjct: 127 LLAPGRALY 135

[Close]

BLAST of Carg16414 vs. Swiss-Prot
Match: sp|Q9CR96|TM208_MOUSE (Transmembrane protein 208 OS=Mus musculus OX=10090 GN=Tmem208 PE=2 SV=1)

HSP 1 Score: 79.7 bits (195), Expect = 3.5e-14
Identity = 43/129 (33.33%), Postives = 75/129 (58.14%), Query Frame = 0


Query: 1   MANQGAKKRKEENARHMANLRRLIIACNATYILVRMLIFHSSFTWKHWIGLIVTSAAYFI 60
           +  +G K+  EEN   +    R+I+  NA Y LV ++ F+SS ++  W+ L  + A Y  
Sbjct: 7   VGTRGKKQIFEENKETLKFYLRIILGANAIYCLVTLVFFYSSASFWAWMALGFSLAVYGA 66

Query: 61  PYNQLSNMANPTYGDEGELLDGGFDMN-TGGICGYLHDMIYITSFVQIMSILSGKFWYTY 120
            Y+ +S+MA  ++ ++G L+DGG D+N   G+  +L D+I +T+ VQ++S  S   W  +
Sbjct: 67  SYHSMSSMARASFSEDGSLMDGGMDLNMEQGMAEHLKDVILLTAIVQVLSCFSLYIWSFW 126

Query: 121 LMIPAFGIY 129
           L+ P   +Y
Sbjct: 127 LLAPGRALY 135

[Close]

BLAST of Carg16414 vs. Swiss-Prot
Match: sp|Q9BTX3|TM208_HUMAN (Transmembrane protein 208 OS=Homo sapiens OX=9606 GN=TMEM208 PE=1 SV=1)

HSP 1 Score: 79.0 bits (193), Expect = 5.9e-14
Identity = 43/129 (33.33%), Postives = 74/129 (57.36%), Query Frame = 0


Query: 1   MANQGAKKRKEENARHMANLRRLIIACNATYILVRMLIFHSSFTWKHWIGLIVTSAAYFI 60
           +  +G K+  EEN   +    R+I+  NA Y LV ++ F+SS ++  W+ L  + A Y  
Sbjct: 7   VGTRGKKQIFEENRETLKFYLRIILGANAIYCLVTLVFFYSSASFWAWLALGFSLAVYGA 66

Query: 61  PYNQLSNMANPTYGDEGELLDGGFDMN-TGGICGYLHDMIYITSFVQIMSILSGKFWYTY 120
            Y+ +S+MA   + ++G L+DGG D+N   G+  +L D+I +T+ VQ++S  S   W  +
Sbjct: 67  SYHSMSSMARAAFSEDGALMDGGMDLNMEQGMAEHLKDVILLTAIVQVLSCFSLYVWSFW 126

Query: 121 LMIPAFGIY 129
           L+ P   +Y
Sbjct: 127 LLAPGRALY 135

[Close]

BLAST of Carg16414 vs. TrEMBL
Match: tr|A0A1S3BUY1|A0A1S3BUY1_CUCME (transmembrane protein 208 homolog OS=Cucumis melo OX=3656 GN=LOC103493461 PE=4 SV=1)

HSP 1 Score: 286.2 bits (731), Expect = 4.9e-74
Identity = 159/173 (91.91%), Postives = 166/173 (95.95%), Query Frame = 0


Query: 1   MANQGAKKRKEENARHMANLRRLIIACNATYILVRMLIFHSSFTWKHWIGLIVTSAAYFI 60
           MANQGAKKRKEENARHMANLRRLIIACN  YILVRMLIFHSSFTWKHWIGLIVTS AYFI
Sbjct: 1   MANQGAKKRKEENARHMANLRRLIIACNVIYILVRMLIFHSSFTWKHWIGLIVTSVAYFI 60

Query: 61  PYNQLSNMANPTYGDEGELLDGGFDMNTGGICGYLHDMIYITSFVQIMSILSGKFWYTYL 120
           PYNQL  MA PTYGD+GELLDGGFDM+T GICGY+HD+IYITSFVQIMSILSGKFWYTYL
Sbjct: 61  PYNQLEKMAKPTYGDDGELLDGGFDMSTDGICGYMHDVIYITSFVQIMSILSGKFWYTYL 120

Query: 121 MIPAFGIYKSSGLIKGLLSQGSEDEPXXXXXXXXXXXXXXXXXXVKFVKTKNR 174
           +IPAFG+YKSSGLI+GLLSQGSEDEPXXXXXXXXXXXXXXXXXXVKFVKTKNR
Sbjct: 121 VIPAFGVYKSSGLIRGLLSQGSEDEPXXXXXXXXXXXXXXXXXXVKFVKTKNR 173

[Close]

BLAST of Carg16414 vs. TrEMBL
Match: tr|A0A0A0LH45|A0A0A0LH45_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G036710 PE=4 SV=1)

HSP 1 Score: 282.0 bits (720), Expect = 9.3e-73
Identity = 154/173 (89.02%), Postives = 162/173 (93.64%), Query Frame = 0


Query: 1   MANQGAKKRKEENARHMANLRRLIIACNATYILVRMLIFHSSFTWKHWIGLIVTSAAYFI 60
           MANQGAKKRKEENARHMANLRRLIIACN  YILVRMLIFHSSFTWKHWIGLI TSAAYFI
Sbjct: 1   MANQGAKKRKEENARHMANLRRLIIACNVIYILVRMLIFHSSFTWKHWIGLIFTSAAYFI 60

Query: 61  PYNQLSNMANPTYGDEGELLDGGFDMNTGGICGYLHDMIYITSFVQIMSILSGKFWYTYL 120
           PYNQL  MA P YGD+GELLDGGFDM+TGGICGY+HD+IYITSFVQIMSILSGKFWYTYL
Sbjct: 61  PYNQLEKMAQPIYGDDGELLDGGFDMSTGGICGYMHDVIYITSFVQIMSILSGKFWYTYL 120

Query: 121 MIPAFGIYKSSGLIKGLLSQGSEDEPXXXXXXXXXXXXXXXXXXVKFVKTKNR 174
           +IP FG+YKSSG I+GLLSQGSEDEPXXXXXXXXXXXXXXXX  VKF+KTKNR
Sbjct: 121 VIPGFGVYKSSGFIRGLLSQGSEDEPXXXXXXXXXXXXXXXXSRVKFMKTKNR 173

[Close]

BLAST of Carg16414 vs. TrEMBL
Match: tr|A0A061GWQ7|A0A061GWQ7_THECC (Uncharacterized protein isoform 1 OS=Theobroma cacao OX=3641 GN=TCM_038477 PE=4 SV=1)

HSP 1 Score: 257.7 bits (657), Expect = 1.9e-65
Identity = 133/173 (76.88%), Postives = 149/173 (86.13%), Query Frame = 0


Query: 1   MANQGAKKRKEENARHMANLRRLIIACNATYILVRMLIFHSSFTWKHWIGLIVTSAAYFI 60
           MANQGAKKRKEEN RHMANLRR+IIACN  ++LVRMLIFHSSFTWKHW+GL++TSAAYFI
Sbjct: 1   MANQGAKKRKEENTRHMANLRRIIIACNVIFVLVRMLIFHSSFTWKHWVGLVLTSAAYFI 60

Query: 61  PYNQLSNMANPTYGDEGELLDGGFDMNTGGICGYLHDMIYITSFVQIMSILSGKFWYTYL 120
           PY QL+ MA PTY ++GELLDGGFDM+TGGICGYLHD+IYITSFVQ+MSI+S KFWYTYL
Sbjct: 61  PYQQLAQMAKPTYANDGELLDGGFDMSTGGICGYLHDVIYITSFVQLMSIISEKFWYTYL 120

Query: 121 MIPAFGIYKSSGLIKGLLSQGSEDEPXXXXXXXXXXXXXXXXXXVKFVKTKNR 174
           +IPAFG YKS G I+G LSQGSE E      XXXXXXXXX     KFVKT+NR
Sbjct: 121 VIPAFGAYKSFGFIRGFLSQGSEGEVEDEKTXXXXXXXXXKASRPKFVKTRNR 173

[Close]

BLAST of Carg16414 vs. TrEMBL
Match: tr|A0A1U8K218|A0A1U8K218_GOSHI (transmembrane protein 208 homolog OS=Gossypium hirsutum OX=3635 GN=LOC107912730 PE=4 SV=1)

HSP 1 Score: 255.0 bits (650), Expect = 1.2e-64
Identity = 124/173 (71.68%), Postives = 136/173 (78.61%), Query Frame = 0


Query: 1   MANQGAKKRKEENARHMANLRRLIIACNATYILVRMLIFHSSFTWKHWIGLIVTSAAYFI 60
           MANQGAKKRKEEN RHMANLRRLIIACN  Y+LVRMLIFHSSFTWKHW+GL++TS AYFI
Sbjct: 1   MANQGAKKRKEENTRHMANLRRLIIACNVVYVLVRMLIFHSSFTWKHWVGLLLTSVAYFI 60

Query: 61  PYNQLSNMANPTYGDEGELLDGGFDMNTGGICGYLHDMIYITSFVQIMSILSGKFWYTYL 120
           PY QLS MA P Y D+GELLDGGFDM+TGGICGYLHD+IYITSFVQ+MSI+S KFWYTYL
Sbjct: 61  PYQQLSQMAKPAYSDDGELLDGGFDMSTGGICGYLHDVIYITSFVQLMSIISDKFWYTYL 120

Query: 121 MIPAFGIYKSSGLIKGLLSQGSEDEPXXXXXXXXXXXXXXXXXXVKFVKTKNR 174
           +IPAFG YKS G I+G LS GSE E                    K VKT+NR
Sbjct: 121 VIPAFGAYKSFGFIRGFLSLGSEGEVEDEKTRKKREKMEKKASRPKLVKTRNR 173

[Close]

BLAST of Carg16414 vs. TrEMBL
Match: tr|A0A2P5SG92|A0A2P5SG92_GOSBA (Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=GOBAR_DD04901 PE=4 SV=1)

HSP 1 Score: 255.0 bits (650), Expect = 1.2e-64
Identity = 124/173 (71.68%), Postives = 136/173 (78.61%), Query Frame = 0


Query: 1   MANQGAKKRKEENARHMANLRRLIIACNATYILVRMLIFHSSFTWKHWIGLIVTSAAYFI 60
           MANQGAKKRKEEN RHMANLRRLIIACN  Y+LVRMLIFHSSFTWKHW+GL++TS AYFI
Sbjct: 1   MANQGAKKRKEENTRHMANLRRLIIACNVVYVLVRMLIFHSSFTWKHWVGLLLTSVAYFI 60

Query: 61  PYNQLSNMANPTYGDEGELLDGGFDMNTGGICGYLHDMIYITSFVQIMSILSGKFWYTYL 120
           PY QLS MA P Y D+GELLDGGFDM+TGGICGYLHD+IYITSFVQ+MSI+S KFWYTYL
Sbjct: 61  PYQQLSQMAKPAYSDDGELLDGGFDMSTGGICGYLHDVIYITSFVQLMSIISDKFWYTYL 120

Query: 121 MIPAFGIYKSSGLIKGLLSQGSEDEPXXXXXXXXXXXXXXXXXXVKFVKTKNR 174
           +IPAFG YKS G I+G LS GSE E                    K VKT+NR
Sbjct: 121 VIPAFGAYKSFGFIRGFLSLGSEGEVEDEKTRKKREKMEKKASRPKLVKTRNR 173

The following BLAST results are available for this feature:

BLAST of Carg16414 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022937469.1	4.1e-80	98.84	transmembrane protein 208 homolog [Cucurbita moschata]	[more]
XP_023536815.1	1.2e-79	98.27	transmembrane protein 208 homolog [Cucurbita pepo subsp. pepo]	[more]
XP_022969670.1	5.9e-79	97.69	transmembrane protein 208 homolog [Cucurbita maxima]	[more]
XP_022946520.1	5.7e-74	89.60	transmembrane protein 208 homolog [Cucurbita moschata] >XP_022999772.1 transmemb...	[more]
XP_008452429.1	7.5e-74	91.91	PREDICTED: transmembrane protein 208 homolog [Cucumis melo]	[more]

BLAST of Carg16414 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G23940.1	1.0e-61	75.52	Protein of unknown function (DUF788)	[more]
AT4G30500.1	1.1e-55	70.63	Protein of unknown function (DUF788)	[more]

BLAST of Carg16414 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q6NYP0\|TM208_DANRE	4.0e-18	37.21	Transmembrane protein 208 OS=Danio rerio OX=7955 GN=tmem208 PE=2 SV=1	[more]
sp\|Q54UB0\|TM208_DICDI	8.8e-18	37.21	Transmembrane protein 208 homolog OS=Dictyostelium discoideum OX=44689 GN=tmem20...	[more]
sp\|Q3SZZ5\|TM208_BOVIN	7.0e-15	33.33	Transmembrane protein 208 OS=Bos taurus OX=9913 GN=TMEM208 PE=2 SV=1	[more]
sp\|Q9CR96\|TM208_MOUSE	3.5e-14	33.33	Transmembrane protein 208 OS=Mus musculus OX=10090 GN=Tmem208 PE=2 SV=1	[more]
sp\|Q9BTX3\|TM208_HUMAN	5.9e-14	33.33	Transmembrane protein 208 OS=Homo sapiens OX=9606 GN=TMEM208 PE=1 SV=1	[more]

BLAST of Carg16414 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3BUY1\|A0A1S3BUY1_CUCME	4.9e-74	91.91	transmembrane protein 208 homolog OS=Cucumis melo OX=3656 GN=LOC103493461 PE=4 S...	[more]
tr\|A0A0A0LH45\|A0A0A0LH45_CUCSA	9.3e-73	89.02	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G036710 PE=4 SV=1	[more]
tr\|A0A061GWQ7\|A0A061GWQ7_THECC	1.9e-65	76.88	Uncharacterized protein isoform 1 OS=Theobroma cacao OX=3641 GN=TCM_038477 PE=4 ...	[more]
tr\|A0A1U8K218\|A0A1U8K218_GOSHI	1.2e-64	71.68	transmembrane protein 208 homolog OS=Gossypium hirsutum OX=3635 GN=LOC107912730 ...	[more]
tr\|A0A2P5SG92\|A0A2P5SG92_GOSBA	1.2e-64	71.68	Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=GOBAR_DD04901 PE=4 SV...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR008506	SND2/TMEM208

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg16414-RA	Carg16414-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR008506	SRP-independent targeting protein 2/TMEM208	PFAM	PF05620	DUF788	coord: 1..162 e-value: 1.9E-55 score: 187.1
IPR008506	SRP-independent targeting protein 2/TMEM208	PANTHER	PTHR13505	FAMILY NOT NAMED	coord: 1..167
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 138..173
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 141..165

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg16414	Cla022873	Watermelon (97103) v1	carwmB0914
Carg16414	Csa2G036710	Cucumber (Chinese Long) v2	carcuB0929
Carg16414	MELO3C004109	Melon (DHL92) v3.5.1	carmeB0900
Carg16414	ClCG11G012690	Watermelon (Charleston Gray)	carwcgB0888
Carg16414	CSPI02G05420	Wild cucumber (PI 183967)	carcpiB0952
Carg16414	Cucsa.089940	Cucumber (Gy14) v1	carcgyB1029
Carg16414	CmaCh12G008350	Cucurbita maxima (Rimu)	carcmaB1254
Carg16414	CmoCh12G008400	Cucurbita moschata (Rifu)	carcmoB1223
Carg16414	CmoCh05G010310	Cucurbita moschata (Rifu)	carcmoB1224
Carg16414	Lsi11G007070	Bottle gourd (USVL1VR-Ls)	carlsiB829
Carg16414	Cp4.1LG07g06920	Cucurbita pepo (Zucchini)	carcpeB1263
Carg16414	Cp4.1LG11g08240	Cucurbita pepo (Zucchini)	carcpeB1260
Carg16414	CsGy2G005540	Cucumber (Gy14) v2	carcgybB0902
Carg16414	MELO3C004109.2	Melon (DHL92) v3.6.1	carmedB0908
Carg16414	CsaV3_2G007780	Cucumber (Chinese Long) v3	carcucB0952
Carg16414	Cla97C11G218560	Watermelon (97103) v2	carwmbB0954
Carg16414	Bhi06G001195	Wax gourd	carwgoB1054

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Carg16414	Carg11953	Silver-seed gourd	carcarB523

The following block(s) are covering this gene:


Gene	Organism	Block
Carg16414	Silver-seed gourd	carcarB493
Carg16414	Cucumber (Gy14) v2	carcgybB0901
Carg16414	Cucurbita maxima (Rimu)	carcmaB1253
Carg16414	Cucurbita maxima (Rimu)	carcmaB1255
Carg16414	Wild cucumber (PI 183967)	carcpiB0951
Carg16414	Cucumber (Chinese Long) v3	carcucB0951
Carg16414	Melon (DHL92) v3.5.1	carmeB0898
Carg16414	Melon (DHL92) v3.6.1	carmedB0907
Carg16414	Watermelon (Charleston Gray)	carwcgB0892
Carg16414	Watermelon (97103) v1	carwmB0915
Carg16414	Watermelon (97103) v2	carwmbB0959