Carg16280 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg16280
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	F-box/kelch-repeat protein
Location	Cucurbita_argyrosperma_scaffold_077 : 495279 .. 496412 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTCACCGCCACTTCCCCCTCCTCCAAGCGCAATAAACTGGCTCTCCACCACCACCACCGCCACCGCCACTGCCCCTCTCCGCCGCTCCTTCCCGGCCTCCCTGATCACGTAGCCCAGTTATGCCTCTCCCGCCTCCCCCCTTCCCTGCTCTTCTCCGTCAGCCGCTCATGGCGGCGCCTCATCTACTCCCCTGCCTTCCCCCCTTTCTTCTCTATCTACGCCCTTCTTTCTTCCTCCCCCAATTCCCTCGATTTCTTCACCTTTGATCCAATCTCCTCGAAATGGAACCGCCTCCCGCCGCCGCCTAATCCGCCTCCTCTAGATCTGATGATCCACCACCCCTCTTTCCTCTCCCGCCACCTCCCTGTTCAATCTCTCGCCGTCTCCGGCCACCTCCTCCTCCTCGCCGCCACCACTCAAGACCTCCTCCCTGCCCTGCCTCGCCCTTTAATCTTCTCCCCTGTTTCCAATTCCTGGCAATTCGGTCCTCCCCTCATAACCCCACGTCGCTGGTGCGCTGCCGGCGCACTCCGGGGCTCCGTCTACGTCGCTAGCGGAATTGGGTCGTTCTTCTCCACCGACGTCGCTCGCTCTGTTGAGAGATGGGATTTGAAAAAATCCAGAGGCGGAGGAGGAGGCGATTGGGAGAAGGTTAGTGGATTGAAGGATCGGAGATTCAGTCGAGACGCCATTGATGCTGTGGGGTGGAGGGGAAAGCTTTGTATGGTGAATGTGAAAGGGGATGCGCCGAAAGAAGGGTTGGTTTATGATTTGGAGAGGGATTTGTGGGAGGAGATGCCGGAGGGGATGGTCGGAGGGTGGAGAGGGCCGGTGGCGGCCATGGATGAGGAAGAGATGTATGTAGTGGATGAAGGCGGTGGATGTTTGAGAAGGTATAATCCGGTGGGGGATTTGTGGGAACAAGTACTTCAGTCTAATAGGTTGAAAGGGGCGGTTCAGATGGCGGCCGGCGGTGGCAGAGTCTGCATCGTGTGCGGTGGAAGTATAGGGGAAATCGTGGTTGTGGACGTGGTAGCGTCGCCGCCGTGGCTGAGAGTTGAGCCGACGCCGCCGGGGATGGAGGTGGTCGCCGTCCACGTGCTGCCGAGAATGAGTGCACCGGAGTCATGA

mRNA sequence

ATGGTCACCGCCACTTCCCCCTCCTCCAAGCGCAATAAACTGGCTCTCCACCACCACCACCGCCACCGCCACTGCCCCTCTCCGCCGCTCCTTCCCGGCCTCCCTGATCACGTAGCCCAGTTATGCCTCTCCCGCCTCCCCCCTTCCCTGCTCTTCTCCGTCAGCCGCTCATGGCGGCGCCTCATCTACTCCCCTGCCTTCCCCCCTTTCTTCTCTATCTACGCCCTTCTTTCTTCCTCCCCCAATTCCCTCGATTTCTTCACCTTTGATCCAATCTCCTCGAAATGGAACCGCCTCCCGCCGCCGCCTAATCCGCCTCCTCTAGATCTGATGATCCACCACCCCTCTTTCCTCTCCCGCCACCTCCCTGTTCAATCTCTCGCCGTCTCCGGCCACCTCCTCCTCCTCGCCGCCACCACTCAAGACCTCCTCCCTGCCCTGCCTCGCCCTTTAATCTTCTCCCCTGTTTCCAATTCCTGGCAATTCGGTCCTCCCCTCATAACCCCACGTCGCTGGTGCGCTGCCGGCGCACTCCGGGGCTCCGTCTACGTCGCTAGCGGAATTGGGTCGTTCTTCTCCACCGACGTCGCTCGCTCTGTTGAGAGATGGGATTTGAAAAAATCCAGAGGCGGAGGAGGAGGCGATTGGGAGAAGGTTAGTGGATTGAAGGATCGGAGATTCAGTCGAGACGCCATTGATGCTGTGGGGTGGAGGGGAAAGCTTTGTATGGTGAATGTGAAAGGGGATGCGCCGAAAGAAGGGTTGGTTTATGATTTGGAGAGGGATTTGTGGGAGGAGATGCCGGAGGGGATGGTCGGAGGGTGGAGAGGGCCGGTGGCGGCCATGGATGAGGAAGAGATGTATGTAGTGGATGAAGGCGGTGGATGTTTGAGAAGGTATAATCCGGTGGGGGATTTGTGGGAACAAGTACTTCAGTCTAATAGGTTGAAAGGGGCGGTTCAGATGGCGGCCGGCGGTGGCAGAGTCTGCATCGTGTGCGGTGGAAGTATAGGGGAAATCGTGGTTGTGGACGTGGTAGCGTCGCCGCCGTGGCTGAGAGTTGAGCCGACGCCGCCGGGGATGGAGGTGGTCGCCGTCCACGTGCTGCCGAGAATGAGTGCACCGGAGTCATGA

Coding sequence (CDS)

ATGGTCACCGCCACTTCCCCCTCCTCCAAGCGCAATAAACTGGCTCTCCACCACCACCACCGCCACCGCCACTGCCCCTCTCCGCCGCTCCTTCCCGGCCTCCCTGATCACGTAGCCCAGTTATGCCTCTCCCGCCTCCCCCCTTCCCTGCTCTTCTCCGTCAGCCGCTCATGGCGGCGCCTCATCTACTCCCCTGCCTTCCCCCCTTTCTTCTCTATCTACGCCCTTCTTTCTTCCTCCCCCAATTCCCTCGATTTCTTCACCTTTGATCCAATCTCCTCGAAATGGAACCGCCTCCCGCCGCCGCCTAATCCGCCTCCTCTAGATCTGATGATCCACCACCCCTCTTTCCTCTCCCGCCACCTCCCTGTTCAATCTCTCGCCGTCTCCGGCCACCTCCTCCTCCTCGCCGCCACCACTCAAGACCTCCTCCCTGCCCTGCCTCGCCCTTTAATCTTCTCCCCTGTTTCCAATTCCTGGCAATTCGGTCCTCCCCTCATAACCCCACGTCGCTGGTGCGCTGCCGGCGCACTCCGGGGCTCCGTCTACGTCGCTAGCGGAATTGGGTCGTTCTTCTCCACCGACGTCGCTCGCTCTGTTGAGAGATGGGATTTGAAAAAATCCAGAGGCGGAGGAGGAGGCGATTGGGAGAAGGTTAGTGGATTGAAGGATCGGAGATTCAGTCGAGACGCCATTGATGCTGTGGGGTGGAGGGGAAAGCTTTGTATGGTGAATGTGAAAGGGGATGCGCCGAAAGAAGGGTTGGTTTATGATTTGGAGAGGGATTTGTGGGAGGAGATGCCGGAGGGGATGGTCGGAGGGTGGAGAGGGCCGGTGGCGGCCATGGATGAGGAAGAGATGTATGTAGTGGATGAAGGCGGTGGATGTTTGAGAAGGTATAATCCGGTGGGGGATTTGTGGGAACAAGTACTTCAGTCTAATAGGTTGAAAGGGGCGGTTCAGATGGCGGCCGGCGGTGGCAGAGTCTGCATCGTGTGCGGTGGAAGTATAGGGGAAATCGTGGTTGTGGACGTGGTAGCGTCGCCGCCGTGGCTGAGAGTTGAGCCGACGCCGCCGGGGATGGAGGTGGTCGCCGTCCACGTGCTGCCGAGAATGAGTGCACCGGAGTCATGA

Protein sequence

MVTATSPSSKRNKLALHHHHRHRHCPSPPLLPGLPDHVAQLCLSRLPPSLLFSVSRSWRRLIYSPAFPPFFSIYALLSSSPNSLDFFTFDPISSKWNRLPPPPNPPPLDLMIHHPSFLSRHLPVQSLAVSGHLLLLAATTQDLLPALPRPLIFSPVSNSWQFGPPLITPRRWCAAGALRGSVYVASGIGSFFSTDVARSVERWDLKKSRGGGGGDWEKVSGLKDRRFSRDAIDAVGWRGKLCMVNVKGDAPKEGLVYDLERDLWEEMPEGMVGGWRGPVAAMDEEEMYVVDEGGGCLRRYNPVGDLWEQVLQSNRLKGAVQMAAGGGRVCIVCGGSIGEIVVVDVVASPPWLRVEPTPPGMEVVAVHVLPRMSAPES

Homology

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BLAST of Carg16280 vs. NCBI nr
Match: XP_022937172.1 (F-box/kelch-repeat protein SKIP25-like isoform X2 [Cucurbita moschata])

HSP 1 Score: 712.6 bits (1838), Expect = 7.0e-202
Identity = 352/377 (93.37%), Postives = 354/377 (93.90%), Query Frame = 0


Query: 1   MVTATSPXXXXXXXXXXXXXXXXXXXXXPLLPGLPDHVAQLCLSRLPPSLLFSVSRSWRR 60
           MVTATSP                     PLLPGLPDHVAQLCLSRLPPSLLFSVSRSWRR
Sbjct: 1   MVTATSP---SSKRNKLALHHHRHCPSPPLLPGLPDHVAQLCLSRLPPSLLFSVSRSWRR 60

Query: 61  LIYSPAFPPFFSIYALLSSSPNSLDFFTFDPISSKWNRLPPPPNPPPLDLMIHHPSFLSR 120
           LIYSPAFPPFFSIYALLSSSPNSLDFFTFDPISSKWNRLPPPPNPPPLDLMIHHPSFLSR
Sbjct: 61  LIYSPAFPPFFSIYALLSSSPNSLDFFTFDPISSKWNRLPPPPNPPPLDLMIHHPSFLSR 120

Query: 121 HLPVQSLAVSGHLLLLAATTQDLLPALPRPLIFSPVSNSWQFGPPLITPRRWCAAGALRG 180
           HLPVQSLAVSGHLLLLAATTQ+LLPALPRPLIFSPVSNSWQFGPPLITPRRWCAAGALRG
Sbjct: 121 HLPVQSLAVSGHLLLLAATTQNLLPALPRPLIFSPVSNSWQFGPPLITPRRWCAAGALRG 180

Query: 181 SVYVASGIGSFFSTDVARSVERWDLKKSRGGGGGDWEKVSGLKDRRFSRDAIDAVGWRGK 240
           SVYVASGIGSFFSTDVARSVERWDLKK RGGGGGDWEKVSGLKDRRFSRDAIDAVGWRGK
Sbjct: 181 SVYVASGIGSFFSTDVARSVERWDLKKPRGGGGGDWEKVSGLKDRRFSRDAIDAVGWRGK 240

Query: 241 LCMVNVKGDAPKEGLVYDLERDLWEEMPEGMVGGWRGPVAAMDEEEMYVVDEGGGCLRRY 300
           LCMVNVKGDAPKEGLVYDLERDLWEEMPEGMVGGWRGPVAAMDEEEMYVVDEGGGCLRRY
Sbjct: 241 LCMVNVKGDAPKEGLVYDLERDLWEEMPEGMVGGWRGPVAAMDEEEMYVVDEGGGCLRRY 300

Query: 301 NPVGDLWEQVLQSNRLKGAVQMAAGGGRVCIVCGGSIGEIVVVDVVASPPWLRVEPTPPG 360
           NPVGDLWEQV+QSNRLKGAVQMAAGGGRVCIVCGGS GEIVVVDVVASPPWLRVEPTPPG
Sbjct: 301 NPVGDLWEQVIQSNRLKGAVQMAAGGGRVCIVCGGSRGEIVVVDVVASPPWLRVEPTPPG 360

Query: 361 MEVVAVHVLPRMSAPES 378
           MEVVAVHVLPRMSAPES
Sbjct: 361 MEVVAVHVLPRMSAPES 374

[Close]

BLAST of Carg16280 vs. NCBI nr
Match: XP_022937163.1 (F-box/kelch-repeat protein SKIP25-like isoform X1 [Cucurbita moschata])

HSP 1 Score: 711.4 bits (1835), Expect = 1.6e-201
Identity = 345/349 (98.85%), Postives = 347/349 (99.43%), Query Frame = 0


Query: 29  PLLPGLPDHVAQLCLSRLPPSLLFSVSRSWRRLIYSPAFPPFFSIYALLSSSPNSLDFFT 88
           PLLPGLPDHVAQLCLSRLPPSLLFSVSRSWRRLIYSPAFPPFFSIYALLSSSPNSLDFFT
Sbjct: 39  PLLPGLPDHVAQLCLSRLPPSLLFSVSRSWRRLIYSPAFPPFFSIYALLSSSPNSLDFFT 98

Query: 89  FDPISSKWNRLPPPPNPPPLDLMIHHPSFLSRHLPVQSLAVSGHLLLLAATTQDLLPALP 148
           FDPISSKWNRLPPPPNPPPLDLMIHHPSFLSRHLPVQSLAVSGHLLLLAATTQ+LLPALP
Sbjct: 99  FDPISSKWNRLPPPPNPPPLDLMIHHPSFLSRHLPVQSLAVSGHLLLLAATTQNLLPALP 158

Query: 149 RPLIFSPVSNSWQFGPPLITPRRWCAAGALRGSVYVASGIGSFFSTDVARSVERWDLKKS 208
           RPLIFSPVSNSWQFGPPLITPRRWCAAGALRGSVYVASGIGSFFSTDVARSVERWDLKK 
Sbjct: 159 RPLIFSPVSNSWQFGPPLITPRRWCAAGALRGSVYVASGIGSFFSTDVARSVERWDLKKP 218

Query: 209 RGGGGGDWEKVSGLKDRRFSRDAIDAVGWRGKLCMVNVKGDAPKEGLVYDLERDLWEEMP 268
           RGGGGGDWEKVSGLKDRRFSRDAIDAVGWRGKLCMVNVKGDAPKEGLVYDLERDLWEEMP
Sbjct: 219 RGGGGGDWEKVSGLKDRRFSRDAIDAVGWRGKLCMVNVKGDAPKEGLVYDLERDLWEEMP 278

Query: 269 EGMVGGWRGPVAAMDEEEMYVVDEGGGCLRRYNPVGDLWEQVLQSNRLKGAVQMAAGGGR 328
           EGMVGGWRGPVAAMDEEEMYVVDEGGGCLRRYNPVGDLWEQV+QSNRLKGAVQMAAGGGR
Sbjct: 279 EGMVGGWRGPVAAMDEEEMYVVDEGGGCLRRYNPVGDLWEQVIQSNRLKGAVQMAAGGGR 338

Query: 329 VCIVCGGSIGEIVVVDVVASPPWLRVEPTPPGMEVVAVHVLPRMSAPES 378
           VCIVCGGS GEIVVVDVVASPPWLRVEPTPPGMEVVAVHVLPRMSAPES
Sbjct: 339 VCIVCGGSRGEIVVVDVVASPPWLRVEPTPPGMEVVAVHVLPRMSAPES 387

[Close]

BLAST of Carg16280 vs. NCBI nr
Match: XP_023540479.1 (F-box/kelch-repeat protein SKIP25-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 705.3 bits (1819), Expect = 1.1e-199
Identity = 340/349 (97.42%), Postives = 345/349 (98.85%), Query Frame = 0


Query: 29  PLLPGLPDHVAQLCLSRLPPSLLFSVSRSWRRLIYSPAFPPFFSIYALLSSSPNSLDFFT 88
           PLLPGLPDHVAQLCLSRLPPSLLFSVSRSWRRLIYSPAFPPFFSIYALLSSSPNSLDFFT
Sbjct: 31  PLLPGLPDHVAQLCLSRLPPSLLFSVSRSWRRLIYSPAFPPFFSIYALLSSSPNSLDFFT 90

Query: 89  FDPISSKWNRLPPPPNPPPLDLMIHHPSFLSRHLPVQSLAVSGHLLLLAATTQDLLPALP 148
           FDPISSKWNRLPPPPNPPPLDLMIHHPSFLSRHLPVQSLAVSGHLLLLAATTQDLLPALP
Sbjct: 91  FDPISSKWNRLPPPPNPPPLDLMIHHPSFLSRHLPVQSLAVSGHLLLLAATTQDLLPALP 150

Query: 149 RPLIFSPVSNSWQFGPPLITPRRWCAAGALRGSVYVASGIGSFFSTDVARSVERWDLKKS 208
           RPLIFSPVSNSWQFGPPLITPRRWCAAGALRGSVYVASGIGSFFSTDVARSVERWDLKK 
Sbjct: 151 RPLIFSPVSNSWQFGPPLITPRRWCAAGALRGSVYVASGIGSFFSTDVARSVERWDLKKP 210

Query: 209 RGGGGGDWEKVSGLKDRRFSRDAIDAVGWRGKLCMVNVKGDAPKEGLVYDLERDLWEEMP 268
           RGGGGGDWEKV+GLKDRRFSRDAIDAVGWRGKLCMVNVKGDAPKEGLV+DLERDLWEEMP
Sbjct: 211 RGGGGGDWEKVNGLKDRRFSRDAIDAVGWRGKLCMVNVKGDAPKEGLVFDLERDLWEEMP 270

Query: 269 EGMVGGWRGPVAAMDEEEMYVVDEGGGCLRRYNPVGDLWEQVLQSNRLKGAVQMAAGGGR 328
           EGMVGGWRGPVAAMDEEEMYVVDEGGGCLRRYNPVGDLWEQV+QS+RLKGAVQMAAGGGR
Sbjct: 271 EGMVGGWRGPVAAMDEEEMYVVDEGGGCLRRYNPVGDLWEQVIQSSRLKGAVQMAAGGGR 330

Query: 329 VCIVCGGSIGEIVVVDVVASPPWLRVEPTPPGMEVVAVHVLPRMSAPES 378
           VC+VCGGS GEIVVVDV ASPPWLRVEPTPPGMEVVAVHVLPRMS PES
Sbjct: 331 VCVVCGGSRGEIVVVDVAASPPWLRVEPTPPGMEVVAVHVLPRMSTPES 379

[Close]

BLAST of Carg16280 vs. NCBI nr
Match: XP_023005807.1 (F-box/kelch-repeat protein SKIP25-like [Cucurbita maxima])

HSP 1 Score: 688.3 bits (1775), Expect = 1.4e-194
Identity = 335/349 (95.99%), Postives = 342/349 (97.99%), Query Frame = 0


Query: 29  PLLPGLPDHVAQLCLSRLPPSLLFSVSRSWRRLIYSPAFPPFFSIYALLSSSPNSLDFFT 88
           PLLPGLPDHVAQLCLSRLPPSLLFSVSRSWRRLIYSPAFPP+FSIYALLSSSPNSLDFFT
Sbjct: 26  PLLPGLPDHVAQLCLSRLPPSLLFSVSRSWRRLIYSPAFPPYFSIYALLSSSPNSLDFFT 85

Query: 89  FDPISSKWNRLPPPPNPPPLDLMIHHPSFLSRHLPVQSLAVSGHLLLLAATTQDLLPALP 148
           FDPISSKWNRLPPPPNPPPLDLMIHHPSFLSRHLPVQSLAVSGHLLLLAATTQDLLPALP
Sbjct: 86  FDPISSKWNRLPPPPNPPPLDLMIHHPSFLSRHLPVQSLAVSGHLLLLAATTQDLLPALP 145

Query: 149 RPLIFSPVSNSWQFGPPLITPRRWCAAGALRGSVYVASGIGSFFSTDVARSVERWDLKKS 208
           RPLIFSPVSNSWQFGPPL TPRRWCAAGALRGSVYVASGIGSFFSTDVARSVERWDLKK 
Sbjct: 146 RPLIFSPVSNSWQFGPPLTTPRRWCAAGALRGSVYVASGIGSFFSTDVARSVERWDLKKP 205

Query: 209 RGGGGGDWEKVSGLKDRRFSRDAIDAVGWRGKLCMVNVKGDAPKEGLVYDLERDLWEEMP 268
           R G GGDWEKVSGLKDRRFSRDAIDAVGWRGKLCMVNVKGDAPKEGLVYDLERD+WEEMP
Sbjct: 206 R-GRGGDWEKVSGLKDRRFSRDAIDAVGWRGKLCMVNVKGDAPKEGLVYDLERDVWEEMP 265

Query: 269 EGMVGGWRGPVAAMDEEEMYVVDEGGGCLRRYNPVGDLWEQVLQSNRLKGAVQMAAGGGR 328
           EGMV GWRGPVAAMDEEEMYVVDE GGCLR+YNPVGD+WEQV+QSNRLKGAVQMAAGGGR
Sbjct: 266 EGMVRGWRGPVAAMDEEEMYVVDEVGGCLRKYNPVGDVWEQVIQSNRLKGAVQMAAGGGR 325

Query: 329 VCIVCGGSIGEIVVVDVVASPPWLRVEPTPPGMEVVAVHVLPRMSAPES 378
           VC+VCGGS GEIVVVDVVASPPWLRVEPTPPG+EVVAVHVLPRMSAPES
Sbjct: 326 VCVVCGGSRGEIVVVDVVASPPWLRVEPTPPGIEVVAVHVLPRMSAPES 373

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BLAST of Carg16280 vs. NCBI nr
Match: XP_008448576.1 (PREDICTED: F-box/kelch-repeat protein SKIP25 [Cucumis melo])

HSP 1 Score: 585.9 bits (1509), Expect = 9.9e-164
Identity = 287/345 (83.19%), Postives = 307/345 (88.99%), Query Frame = 0


Query: 29  PLLPGLPDHVAQLCLSRLPPSLLFSVSRSWRRLIYSPAFPPFFSIYALLSSSPNSLDFFT 88
           PLLPGLPDHVAQ CLS +PPSLLFSVSRSWRRL+YSP+FPPF S+YALLSSS NSLDFF 
Sbjct: 29  PLLPGLPDHVAQFCLSHVPPSLLFSVSRSWRRLLYSPSFPPFSSLYALLSSSSNSLDFFN 88

Query: 89  FDPISSKWNRLPPPPNPPPLDLMIHHPSFLSRHLPVQSLAVSGHLLLLAATTQDLLPALP 148
           FDPISSKW+ LPPPPN P   L+IHHPSFLSRHLPVQSL+VSGHLLLLAATT +LLPALP
Sbjct: 89  FDPISSKWSPLPPPPNSPSSHLLIHHPSFLSRHLPVQSLSVSGHLLLLAATTHNLLPALP 148

Query: 149 RPLIFSPVSNSWQFGPPLITPRRWCAAGALRGSVYVASGIGSFFSTDVARSVERWDLKKS 208
           RPL+FSP SNSW+  PPL TPRRWCAAGALRGSVYVASGIGSFFSTDVARSVERWDLK  
Sbjct: 149 RPLLFSPFSNSWRLAPPLPTPRRWCAAGALRGSVYVASGIGSFFSTDVARSVERWDLK-- 208

Query: 209 RGGGGGDWEKVSGLKDRRFSRDAIDAVGWRGKLCMVNVKGDAPKEGLVYDLERDLWEEMP 268
              G GDWEKVSGLKD RFSRDAIDAVGW+GKLCMVNVKG A KEGLVYDLE+D WE+MP
Sbjct: 209 -ANGAGDWEKVSGLKDGRFSRDAIDAVGWKGKLCMVNVKGHALKEGLVYDLEKDEWEDMP 268

Query: 269 EGMVGGWRGPVAAMDEEEMYVVDEGGGCLRRYNPVGDLWEQVLQSNRLKGAVQMAAGGGR 328
           EGM+GGWRGP AAMDEE+MYVVDE  G LRRY+P  D WE V++SNRLKGAVQMAAGGGR
Sbjct: 269 EGMIGGWRGPAAAMDEEDMYVVDEVSGSLRRYDPERDFWEDVMESNRLKGAVQMAAGGGR 328

Query: 329 VCIVCGGSIGEIVVVDVVASPPWLRVEPTPPGMEVVAVHVLPRMS 374
           VC+VCGGS GEIVVVDVVASP  L VEPTPPG EVVAVHVLPRM+
Sbjct: 329 VCVVCGGSRGEIVVVDVVASPARLWVEPTPPGTEVVAVHVLPRMN 370

[Close]

BLAST of Carg16280 vs. TAIR10
Match: AT1G31350.1 (KAR-UP F-box 1)

HSP 1 Score: 337.4 bits (864), Expect = 1.1e-92
Identity = 181/360 (50.28%), Postives = 244/360 (67.78%), Query Frame = 0


Query: 30  LLPGLPDHVAQLCLSRL-PPSLLFSVSRSWRRLIYSPAFPPFFSIYALLSSSPN------ 89
           L+ GLPDH++++CLS +  PSLL +V   WRRL+YSP FP F S+YAL   S +      
Sbjct: 35  LIEGLPDHISEICLSLVHRPSLLSAVCTRWRRLLYSPEFPSFPSLYALFVDSTSDTGRVN 94

Query: 90  -SLDFFTFDPISSKWNRLPPPPNPPPLD-LMIHHPSFLSRHLPVQSLAVSGHLLLLAATT 149
            S+ F  F+P+SSKW  LP      PL  ++  HPSF+S +LP+Q ++ +G L+L+A + 
Sbjct: 95  PSVRFMCFNPVSSKWYPLPXXXXXXPLHRILYRHPSFISFNLPIQCVSAAGKLILIAGSN 154

Query: 150 QDLLPALPRPLIFSPVSNSWQFGPPLITPRRWCAAGALRGSVYVASGIGSFFSTDVARSV 209
           Q L PA+  PLIF P+S+SW  GP + +PRRWCA GA  G++Y+ASGI S FS+ VA+SV
Sbjct: 155 QQLSPAISHPLIFDPISSSWSSGPRIGSPRRWCATGACDGAIYIASGISSQFSSTVAKSV 214

Query: 210 ERWDL-KKSRGGGGGDWEKVSGLKDRRFSRDAIDAVGWRGKLCMVNVKGDAPKEGLVYDL 269
           E+ DL +++R     +WEK+  ++D RFSR+AIDAVG+R KL MVNVKGDA KEG +YD+
Sbjct: 215 EKLDLTEQNRNNHRFNWEKLRDMRDLRFSREAIDAVGYRRKLLMVNVKGDAVKEGAIYDV 274

Query: 270 ERDLWEEMPEGMVGGWRGPVAAMDEEEMYVVDEGGGCLRRYNPVGDLWEQVL----QSNR 329
            +D WE MPE M+ GWRGPVAAM+EE +Y VDE  G +R+Y+     W +V+        
Sbjct: 275 VKDDWEPMPEEMLVGWRGPVAAMEEEILYSVDERRGTVRKYDDEKREWREVVVVEGGEEM 334

Query: 330 LKGAVQMAAGGGRVCIVCGGSIGEIVVVDVVASPPWLRVEPTPPGMEVVAVHVLPRMSAP 376
           LKGA Q+ A  G++C+V G   G+IVVVDV A P  +     P G+E V+VHVLPRMS P
Sbjct: 335 LKGATQVTADSGKLCVVTGD--GKIVVVDVAAEPAKIWNVEIPDGLEPVSVHVLPRMSQP 392

[Close]

BLAST of Carg16280 vs. TAIR10
Match: AT2G24540.1 (Galactose oxidase/kelch repeat superfamily protein)

HSP 1 Score: 77.4 bits (189), Expect = 2.1e-14
Identity = 74/287 (25.78%), Postives = 118/287 (41.11%), Query Frame = 0


Query: 29  PLLPGLPDHVAQLCLSRLP---PSLLFSVSRSWRRLIYSPAF----------PPFFSIYA 88
           PL+ GLP+ +A+LCL RLP    +L  SVS SW + I +P F           P+  ++A
Sbjct: 27  PLISGLPNDIAELCLLRLPYPYHALYRSVSSSWNKTITNPRFLFSKQSLSISSPYLFVFA 86

Query: 89  LLSSSPNSLDFFTFDPISSKWNRLPPPPNPPPLDLMIHHPSFLSRHLPVQSLAVSGHLLL 148
             + S   + + + D  S +W  LPP PN       I  P  LS      S+   G L +
Sbjct: 87  -FNKSTARIQWQSLDLASGRWFVLPPMPNS---FTKISSPHALS----CASMPRQGKLFV 146

Query: 149 LAATTQDLLPALPRPLIFSPVSNSWQFGPPLITPRRWCAAGALRGSVYVASG-IGSFFST 208
           L     +        ++++ ++N W    P+++PR +  +G + G +    G +G   + 
Sbjct: 147 LGGGDVN-----RSAVVYTALTNRWSCISPMMSPRTYFVSGNVNGKIMAVGGSVGG--NG 206

Query: 209 DVARSVERWDLKKSRGGGGGDWEKVSGL-------KDRRFSRDAIDAVGWRGKLCMVNVK 268
           +    VE +D           W  V  L             ++     GW          
Sbjct: 207 EATTEVESYD------PDNDTWTVVKKLPMVLAKYDSAVIGKEMCVTEGWAWPFMF---- 266

Query: 269 GDAPKEGLVYDLERDLWEEMPEGMVGGWRGPVAAMDEEEMYVVDEGG 295
              P  G VYD +   W EM  GM  GW G V+ +  + ++V+ E G
Sbjct: 267 ---PPMGQVYDSDEGTWREMSGGMKEGWTG-VSVVIRDRLFVISEHG 284

[Close]

BLAST of Carg16280 vs. TAIR10
Match: AT1G22040.1 (Galactose oxidase/kelch repeat superfamily protein)

HSP 1 Score: 70.9 bits (172), Expect = 2.0e-12
Identity = 81/345 (23.48%), Postives = 129/345 (37.39%), Query Frame = 0


Query: 30  LLPGLPDHVAQLCLSRLPP---SLLFSVSRSWRRLIYSPAFPPFFS--------IYALLS 89
           L+P LPD ++   L+RLP    S +  VSR WR  + +                +Y L  
Sbjct: 43  LIPSLPDELSIQILARLPRICYSSVRLVSRRWRSAVSTSEVYSLRKELGRTEEWLYVLTK 102

Query: 90  SSPNSLDFFTFDPISSKWNRLPPPP------------------NPPPLDLMIHHPSFLSR 149
              + L ++  DP+S+KW RLPP P                    P  ++     SFL R
Sbjct: 103 GHEDKLLWYALDPVSTKWQRLPPMPVVVYEEESRKSLSGLWNMITPSFNVGAIVRSFLGR 162

Query: 150 HLPVQSL--------AVSGHLLLLAATTQDLLPALPRPLIFSPVSNSWQFGPPLITPRRW 209
               + +        AV G L ++   ++     +     F P+ NSW     ++  R +
Sbjct: 163 RDSSEQMPFCGCAIGAVDGGLYVIGGLSRS--KTVSCVWRFDPILNSWSEVSSMLASRAY 222

Query: 210 CAAGALRGSVYVASGIG-SFFSTDVARSVERWDLKKSRGGGGGDWEKVSGLK-------D 269
              G L   +YV  G+          +S E +D           W +V  +         
Sbjct: 223 SKTGVLNKKLYVVGGVDRGRGGLSPLQSAEVYDPSTDA------WSEVPSMPFSKAQVLP 282

Query: 270 RRFSRDAIDAVG-----WRGKLCMVNVKGDAP----KEGLVYDLERDLWEEMPEGMVGGW 312
             F  D +  +      + G+LC+       P      G VYD E +LW EMP GM  GW
Sbjct: 283 NAFLADLLKPIATGMTCYNGRLCVPQSLYSWPFFVDVGGEVYDPETNLWVEMPSGMGEGW 342

[Close]

BLAST of Carg16280 vs. TAIR10
Match: AT1G30090.1 (Galactose oxidase/kelch repeat superfamily protein)

HSP 1 Score: 58.9 bits (141), Expect = 7.7e-09
Identity = 69/281 (24.56%), Postives = 102/281 (36.30%), Query Frame = 0


Query: 29  PLLPGLPDHVAQLCLSRLPPS-------------LLFSVSRSWRRLIYSPAFPPFFSIYA 88
           PL+PGLPD VA  CL R+P               LLF    ++        F   +    
Sbjct: 52  PLIPGLPDDVALNCLLRVPVQSHVSSKSVCKRWHLLFGTKETFFAKRKEFGFKDPWLFVV 111

Query: 89  LLSSSPNSLDFFTFDPISSKWNRLPPPPNPPPLDLMIHHPSFLSRHLPVQSLAVSGHLLL 148
             S     + +   D  +  W+ +P     P  D +  H  F S  +P +     G + +
Sbjct: 112 GFSRCTGKIQWKVLDLRNLTWHEIPA---MPCRDKVCPH-GFRSVSMPRE-----GTMFV 171

Query: 149 LAATTQDLLPALPRPLIFSPVSNSWQFGPPLITPRRWCAAGALRGSVYVASG-IGSFFST 208
                 D    L   L +  V N W     +IT R + A+G + G +Y A G     +  
Sbjct: 172 CGGMVSDSDCPLDLVLKYDMVKNHWTVTNKMITARSFFASGVIDGMIYAAGGNAADLYEL 231

Query: 209 DVARSVERWDLKKSRGGGGGDWEKVSGLKDRRFSRDAIDAVGWRGKLCMVN---VKGDAP 268
           D A  +   D         G+W  VS +     S    D     GKL +           
Sbjct: 232 DCAEVLNPLD---------GNWRPVSNMVAHMAS---YDTAVLNGKLLVTEGWLWPFFVS 291

Query: 269 KEGLVYDLERDLWEEMPEGMVGGWRGPVAAMDEEEMYVVDE 293
             G VYD   D WE M  G+  GW G  + +  + +++V E
Sbjct: 292 PRGQVYDPRTDQWETMSMGLREGWTG-TSVVIYDRLFIVSE 310

[Close]

BLAST of Carg16280 vs. TAIR10
Match: AT1G55270.1 (Galactose oxidase/kelch repeat superfamily protein)

HSP 1 Score: 47.0 bits (110), Expect = 3.0e-05
Identity = 44/155 (28.39%), Postives = 62/155 (40.00%), Query Frame = 0


Query: 29  PLLPGLPDHVAQLCLSRLPPS---LLFSVSRSWRRL-----IYSPAFPPFFS---IYALL 88
           PLLPGLPD +A  CL R+P +    L  V + W RL      YS       S   +Y   
Sbjct: 77  PLLPGLPDDLAVACLIRVPRAEHRKLRLVCKRWYRLASGNFFYSQRKLLGMSEEWVYVFK 136

Query: 89  SSSPNSLDFFTFDPISSKWNRLPPPPNPPPLDLMIHHPSFLSRHLPVQSLAVSGHLLLLA 148
                 + + TFDPIS  W  LPP P               S  +      +SG  L L 
Sbjct: 137 RDRDGKISWNTFDPISQLWQPLPPVPRE------------YSEAVGFGCAVLSGCHLYLF 196

Query: 149 ATTQDLLPALPRPLIFSPVSNSWQFGPPLITPRRW 173
                L  ++ R + ++  +N W   P ++  R +
Sbjct: 197 GGKDPLRGSMRRVIFYNARTNKWHRAPDMLRKRHF 219

[Close]

BLAST of Carg16280 vs. Swiss-Prot
Match: sp|Q8GX29|SKI25_ARATH (F-box/kelch-repeat protein SKIP25 OS=Arabidopsis thaliana OX=3702 GN=SKIP25 PE=1 SV=1)

HSP 1 Score: 337.4 bits (864), Expect = 2.0e-91
Identity = 181/360 (50.28%), Postives = 244/360 (67.78%), Query Frame = 0


Query: 30  LLPGLPDHVAQLCLSRL-PPSLLFSVSRSWRRLIYSPAFPPFFSIYALLSSSPN------ 89
           L+ GLPDH++++CLS +  PSLL +V   WRRL+YSP FP F S+YAL   S +      
Sbjct: 35  LIEGLPDHISEICLSLVHRPSLLSAVCTRWRRLLYSPEFPSFPSLYALFVDSTSDTGRVN 94

Query: 90  -SLDFFTFDPISSKWNRLPPPPNPPPLD-LMIHHPSFLSRHLPVQSLAVSGHLLLLAATT 149
            S+ F  F+P+SSKW  LP      PL  ++  HPSF+S +LP+Q ++ +G L+L+A + 
Sbjct: 95  PSVRFMCFNPVSSKWYPLPXXXXXXPLHRILYRHPSFISFNLPIQCVSAAGKLILIAGSN 154

Query: 150 QDLLPALPRPLIFSPVSNSWQFGPPLITPRRWCAAGALRGSVYVASGIGSFFSTDVARSV 209
           Q L PA+  PLIF P+S+SW  GP + +PRRWCA GA  G++Y+ASGI S FS+ VA+SV
Sbjct: 155 QQLSPAISHPLIFDPISSSWSSGPRIGSPRRWCATGACDGAIYIASGISSQFSSTVAKSV 214

Query: 210 ERWDL-KKSRGGGGGDWEKVSGLKDRRFSRDAIDAVGWRGKLCMVNVKGDAPKEGLVYDL 269
           E+ DL +++R     +WEK+  ++D RFSR+AIDAVG+R KL MVNVKGDA KEG +YD+
Sbjct: 215 EKLDLTEQNRNNHRFNWEKLRDMRDLRFSREAIDAVGYRRKLLMVNVKGDAVKEGAIYDV 274

Query: 270 ERDLWEEMPEGMVGGWRGPVAAMDEEEMYVVDEGGGCLRRYNPVGDLWEQVL----QSNR 329
            +D WE MPE M+ GWRGPVAAM+EE +Y VDE  G +R+Y+     W +V+        
Sbjct: 275 VKDDWEPMPEEMLVGWRGPVAAMEEEILYSVDERRGTVRKYDDEKREWREVVVVEGGEEM 334

Query: 330 LKGAVQMAAGGGRVCIVCGGSIGEIVVVDVVASPPWLRVEPTPPGMEVVAVHVLPRMSAP 376
           LKGA Q+ A  G++C+V G   G+IVVVDV A P  +     P G+E V+VHVLPRMS P
Sbjct: 335 LKGATQVTADSGKLCVVTGD--GKIVVVDVAAEPAKIWNVEIPDGLEPVSVHVLPRMSQP 392

[Close]

BLAST of Carg16280 vs. Swiss-Prot
Match: sp|Q8LAW2|AFR_ARATH (F-box protein AFR OS=Arabidopsis thaliana OX=3702 GN=AFR PE=1 SV=2)

HSP 1 Score: 77.4 bits (189), Expect = 3.8e-13
Identity = 74/287 (25.78%), Postives = 118/287 (41.11%), Query Frame = 0


Query: 29  PLLPGLPDHVAQLCLSRLP---PSLLFSVSRSWRRLIYSPAF----------PPFFSIYA 88
           PL+ GLP+ +A+LCL RLP    +L  SVS SW + I +P F           P+  ++A
Sbjct: 27  PLISGLPNDIAELCLLRLPYPYHALYRSVSSSWNKTITNPRFLFSKQSLSISSPYLFVFA 86

Query: 89  LLSSSPNSLDFFTFDPISSKWNRLPPPPNPPPLDLMIHHPSFLSRHLPVQSLAVSGHLLL 148
             + S   + + + D  S +W  LPP PN       I  P  LS      S+   G L +
Sbjct: 87  -FNKSTARIQWQSLDLASGRWFVLPPMPNS---FTKISSPHALS----CASMPRQGKLFV 146

Query: 149 LAATTQDLLPALPRPLIFSPVSNSWQFGPPLITPRRWCAAGALRGSVYVASG-IGSFFST 208
           L     +        ++++ ++N W    P+++PR +  +G + G +    G +G   + 
Sbjct: 147 LGGGDVN-----RSAVVYTALTNRWSCISPMMSPRTYFVSGNVNGKIMAVGGSVGG--NG 206

Query: 209 DVARSVERWDLKKSRGGGGGDWEKVSGL-------KDRRFSRDAIDAVGWRGKLCMVNVK 268
           +    VE +D           W  V  L             ++     GW          
Sbjct: 207 EATTEVESYD------PDNDTWTVVKKLPMVLAKYDSAVIGKEMCVTEGWAWPFMF---- 266

Query: 269 GDAPKEGLVYDLERDLWEEMPEGMVGGWRGPVAAMDEEEMYVVDEGG 295
              P  G VYD +   W EM  GM  GW G V+ +  + ++V+ E G
Sbjct: 267 ---PPMGQVYDSDEGTWREMSGGMKEGWTG-VSVVIRDRLFVISEHG 284

[Close]

BLAST of Carg16280 vs. Swiss-Prot
Match: sp|Q9LM55|FBK8_ARATH (F-box/kelch-repeat protein At1g22040 OS=Arabidopsis thaliana OX=3702 GN=At1g22040 PE=2 SV=1)

HSP 1 Score: 70.9 bits (172), Expect = 3.5e-11
Identity = 81/345 (23.48%), Postives = 129/345 (37.39%), Query Frame = 0


Query: 30  LLPGLPDHVAQLCLSRLPP---SLLFSVSRSWRRLIYSPAFPPFFS--------IYALLS 89
           L+P LPD ++   L+RLP    S +  VSR WR  + +                +Y L  
Sbjct: 43  LIPSLPDELSIQILARLPRICYSSVRLVSRRWRSAVSTSEVYSLRKELGRTEEWLYVLTK 102

Query: 90  SSPNSLDFFTFDPISSKWNRLPPPP------------------NPPPLDLMIHHPSFLSR 149
              + L ++  DP+S+KW RLPP P                    P  ++     SFL R
Sbjct: 103 GHEDKLLWYALDPVSTKWQRLPPMPVVVYEEESRKSLSGLWNMITPSFNVGAIVRSFLGR 162

Query: 150 HLPVQSL--------AVSGHLLLLAATTQDLLPALPRPLIFSPVSNSWQFGPPLITPRRW 209
               + +        AV G L ++   ++     +     F P+ NSW     ++  R +
Sbjct: 163 RDSSEQMPFCGCAIGAVDGGLYVIGGLSRS--KTVSCVWRFDPILNSWSEVSSMLASRAY 222

Query: 210 CAAGALRGSVYVASGIG-SFFSTDVARSVERWDLKKSRGGGGGDWEKVSGLK-------D 269
              G L   +YV  G+          +S E +D           W +V  +         
Sbjct: 223 SKTGVLNKKLYVVGGVDRGRGGLSPLQSAEVYDPSTDA------WSEVPSMPFSKAQVLP 282

Query: 270 RRFSRDAIDAVG-----WRGKLCMVNVKGDAP----KEGLVYDLERDLWEEMPEGMVGGW 312
             F  D +  +      + G+LC+       P      G VYD E +LW EMP GM  GW
Sbjct: 283 NAFLADLLKPIATGMTCYNGRLCVPQSLYSWPFFVDVGGEVYDPETNLWVEMPSGMGEGW 342

[Close]

BLAST of Carg16280 vs. Swiss-Prot
Match: sp|Q9C6Z0|FBK17_ARATH (F-box/kelch-repeat protein At1g30090 OS=Arabidopsis thaliana OX=3702 GN=At1g30090 PE=2 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 1.4e-07
Identity = 69/281 (24.56%), Postives = 102/281 (36.30%), Query Frame = 0


Query: 29  PLLPGLPDHVAQLCLSRLPPS-------------LLFSVSRSWRRLIYSPAFPPFFSIYA 88
           PL+PGLPD VA  CL R+P               LLF    ++        F   +    
Sbjct: 52  PLIPGLPDDVALNCLLRVPVQSHVSSKSVCKRWHLLFGTKETFFAKRKEFGFKDPWLFVV 111

Query: 89  LLSSSPNSLDFFTFDPISSKWNRLPPPPNPPPLDLMIHHPSFLSRHLPVQSLAVSGHLLL 148
             S     + +   D  +  W+ +P     P  D +  H  F S  +P +     G + +
Sbjct: 112 GFSRCTGKIQWKVLDLRNLTWHEIPA---MPCRDKVCPH-GFRSVSMPRE-----GTMFV 171

Query: 149 LAATTQDLLPALPRPLIFSPVSNSWQFGPPLITPRRWCAAGALRGSVYVASG-IGSFFST 208
                 D    L   L +  V N W     +IT R + A+G + G +Y A G     +  
Sbjct: 172 CGGMVSDSDCPLDLVLKYDMVKNHWTVTNKMITARSFFASGVIDGMIYAAGGNAADLYEL 231

Query: 209 DVARSVERWDLKKSRGGGGGDWEKVSGLKDRRFSRDAIDAVGWRGKLCMVN---VKGDAP 268
           D A  +   D         G+W  VS +     S    D     GKL +           
Sbjct: 232 DCAEVLNPLD---------GNWRPVSNMVAHMAS---YDTAVLNGKLLVTEGWLWPFFVS 291

Query: 269 KEGLVYDLERDLWEEMPEGMVGGWRGPVAAMDEEEMYVVDE 293
             G VYD   D WE M  G+  GW G  + +  + +++V E
Sbjct: 292 PRGQVYDPRTDQWETMSMGLREGWTG-TSVVIYDRLFIVSE 310

[Close]

BLAST of Carg16280 vs. Swiss-Prot
Match: sp|Q93W93|FBK22_ARATH (F-box/kelch-repeat protein At1g55270 OS=Arabidopsis thaliana OX=3702 GN=At1g55270 PE=2 SV=1)

HSP 1 Score: 47.0 bits (110), Expect = 5.4e-04
Identity = 44/155 (28.39%), Postives = 62/155 (40.00%), Query Frame = 0


Query: 29  PLLPGLPDHVAQLCLSRLPPS---LLFSVSRSWRRL-----IYSPAFPPFFS---IYALL 88
           PLLPGLPD +A  CL R+P +    L  V + W RL      YS       S   +Y   
Sbjct: 77  PLLPGLPDDLAVACLIRVPRAEHRKLRLVCKRWYRLASGNFFYSQRKLLGMSEEWVYVFK 136

Query: 89  SSSPNSLDFFTFDPISSKWNRLPPPPNPPPLDLMIHHPSFLSRHLPVQSLAVSGHLLLLA 148
                 + + TFDPIS  W  LPP P               S  +      +SG  L L 
Sbjct: 137 RDRDGKISWNTFDPISQLWQPLPPVPRE------------YSEAVGFGCAVLSGCHLYLF 196

Query: 149 ATTQDLLPALPRPLIFSPVSNSWQFGPPLITPRRW 173
                L  ++ R + ++  +N W   P ++  R +
Sbjct: 197 GGKDPLRGSMRRVIFYNARTNKWHRAPDMLRKRHF 219

[Close]

BLAST of Carg16280 vs. TrEMBL
Match: tr|A0A1S3BK00|A0A1S3BK00_CUCME (F-box/kelch-repeat protein SKIP25 OS=Cucumis melo OX=3656 GN=LOC103490713 PE=4 SV=1)

HSP 1 Score: 585.9 bits (1509), Expect = 6.6e-164
Identity = 287/345 (83.19%), Postives = 307/345 (88.99%), Query Frame = 0


Query: 29  PLLPGLPDHVAQLCLSRLPPSLLFSVSRSWRRLIYSPAFPPFFSIYALLSSSPNSLDFFT 88
           PLLPGLPDHVAQ CLS +PPSLLFSVSRSWRRL+YSP+FPPF S+YALLSSS NSLDFF 
Sbjct: 29  PLLPGLPDHVAQFCLSHVPPSLLFSVSRSWRRLLYSPSFPPFSSLYALLSSSSNSLDFFN 88

Query: 89  FDPISSKWNRLPPPPNPPPLDLMIHHPSFLSRHLPVQSLAVSGHLLLLAATTQDLLPALP 148
           FDPISSKW+ LPPPPN P   L+IHHPSFLSRHLPVQSL+VSGHLLLLAATT +LLPALP
Sbjct: 89  FDPISSKWSPLPPPPNSPSSHLLIHHPSFLSRHLPVQSLSVSGHLLLLAATTHNLLPALP 148

Query: 149 RPLIFSPVSNSWQFGPPLITPRRWCAAGALRGSVYVASGIGSFFSTDVARSVERWDLKKS 208
           RPL+FSP SNSW+  PPL TPRRWCAAGALRGSVYVASGIGSFFSTDVARSVERWDLK  
Sbjct: 149 RPLLFSPFSNSWRLAPPLPTPRRWCAAGALRGSVYVASGIGSFFSTDVARSVERWDLK-- 208

Query: 209 RGGGGGDWEKVSGLKDRRFSRDAIDAVGWRGKLCMVNVKGDAPKEGLVYDLERDLWEEMP 268
              G GDWEKVSGLKD RFSRDAIDAVGW+GKLCMVNVKG A KEGLVYDLE+D WE+MP
Sbjct: 209 -ANGAGDWEKVSGLKDGRFSRDAIDAVGWKGKLCMVNVKGHALKEGLVYDLEKDEWEDMP 268

Query: 269 EGMVGGWRGPVAAMDEEEMYVVDEGGGCLRRYNPVGDLWEQVLQSNRLKGAVQMAAGGGR 328
           EGM+GGWRGP AAMDEE+MYVVDE  G LRRY+P  D WE V++SNRLKGAVQMAAGGGR
Sbjct: 269 EGMIGGWRGPAAAMDEEDMYVVDEVSGSLRRYDPERDFWEDVMESNRLKGAVQMAAGGGR 328

Query: 329 VCIVCGGSIGEIVVVDVVASPPWLRVEPTPPGMEVVAVHVLPRMS 374
           VC+VCGGS GEIVVVDVVASP  L VEPTPPG EVVAVHVLPRM+
Sbjct: 329 VCVVCGGSRGEIVVVDVVASPARLWVEPTPPGTEVVAVHVLPRMN 370

[Close]

BLAST of Carg16280 vs. TrEMBL
Match: tr|A0A0A0L136|A0A0A0L136_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G003480 PE=4 SV=1)

HSP 1 Score: 569.7 bits (1467), Expect = 4.9e-159
Identity = 280/345 (81.16%), Postives = 302/345 (87.54%), Query Frame = 0


Query: 29  PLLPGLPDHVAQLCLSRLPPSLLFSVSRSWRRLIYSPAFPPFFSIYALLSSSPNSLDFFT 88
           PLLPGLPDHVAQ CLS +PPSLLFSVSRSWRRL+YSP+FPPF S+YALLSSS NSLDFF 
Sbjct: 29  PLLPGLPDHVAQFCLSHVPPSLLFSVSRSWRRLLYSPSFPPFSSLYALLSSSSNSLDFFN 88

Query: 89  FDPISSKWNRLPPPPNPPPLDLMIHHPSFLSRHLPVQSLAVSGHLLLLAATTQDLLPALP 148
           FDPISSKW+ LPPPPN P   L+IHHPSFLSRHLPVQSL VSGHLLLLAATT +LLPALP
Sbjct: 89  FDPISSKWSPLPPPPNSPSSHLLIHHPSFLSRHLPVQSLTVSGHLLLLAATTYNLLPALP 148

Query: 149 RPLIFSPVSNSWQFGPPLITPRRWCAAGALRGSVYVASGIGSFFSTDVARSVERWDLKKS 208
           RPL+FSP SNSW+  PPL TPRRWCAAGAL GSVYVASGIGSFFSTDVARSVERWD K +
Sbjct: 149 RPLLFSPFSNSWRLAPPLPTPRRWCAAGALHGSVYVASGIGSFFSTDVARSVERWDFKSN 208

Query: 209 RGGGGGDWEKVSGLKDRRFSRDAIDAVGWRGKLCMVNVKGDAPKEGLVYDLERDLWEEMP 268
              G   WEKVSGLKD +FSRDAIDAVGW+GKLCMVNVKG A KEGLVYDLE+D WEEMP
Sbjct: 209 ---GADGWEKVSGLKDGKFSRDAIDAVGWKGKLCMVNVKGHALKEGLVYDLEKDEWEEMP 268

Query: 269 EGMVGGWRGPVAAMDEEEMYVVDEGGGCLRRYNPVGDLWEQVLQSNRLKGAVQMAAGGGR 328
           EGM+ GWRGPVAAMDE++MYVVDE  G LRRY+   D WE+V++SNRLKGAVQMAAGGGR
Sbjct: 269 EGMIEGWRGPVAAMDEKDMYVVDEISGSLRRYDSEKDFWEEVMESNRLKGAVQMAAGGGR 328

Query: 329 VCIVCGGSIGEIVVVDVVASPPWLRVEPTPPGMEVVAVHVLPRMS 374
           VC+VCGGS GEIVVVDVV SP  L VEPTPPG EVVAVHVLPRM+
Sbjct: 329 VCVVCGGSRGEIVVVDVVTSPARLWVEPTPPGTEVVAVHVLPRMN 370

[Close]

BLAST of Carg16280 vs. TrEMBL
Match: tr|M5WZH1|M5WZH1_PRUPE (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_5G018500 PE=4 SV=1)

HSP 1 Score: 486.1 bits (1250), Expect = 7.1e-134
Identity = 235/351 (66.95%), Postives = 286/351 (81.48%), Query Frame = 0


Query: 29  PLLPGLPDHVAQLCLSRLPPSLLFSVSRSWRRLIYSPAFPPFFSIYALL--SSSPNSLDF 88
           PLLPGLPD +AQ+CLS + PS+LFSV  SWRRLIYS +FPPF S+YALL  SSSPNS+ F
Sbjct: 26  PLLPGLPDDIAQVCLSLVHPSVLFSVCTSWRRLIYSSSFPPFLSLYALLTSSSSPNSIQF 85

Query: 89  FTFDPISSKWNRLPPPPNPPPLDLMIHHPSFLSRHLPVQSLAVSGHLLLLAATTQDLLPA 148
           ++FDP+SS W+ LP  P  PPL L + HPSF+SR+LP+QS++VSG+L+L+AATT +LLPA
Sbjct: 86  YSFDPLSSNWHALPATPPDPPLRLFLRHPSFISRNLPIQSVSVSGNLVLVAATTSNLLPA 145

Query: 149 LPRPLIFSPVSNSWQFGPPLITPRRWCAAGALRGSVYVASGIGSFFSTDVARSVERWDLK 208
           LPRPL+F PV+  W FGPPL TPRRWC+AGAL G+VYVASGIGS FS DVARSVE+WDL 
Sbjct: 146 LPRPLVFDPVAKKWAFGPPLATPRRWCSAGALGGAVYVASGIGSHFSIDVARSVEKWDLT 205

Query: 209 KSRGGG----GGDWEKVSGLKDRRFSRDAIDAVGWRGKLCMVNVKGDAPKEGLVYDLERD 268
           K++       G +WEK  GL+D RFSRDAI+AVGWRGKLCMVN+KGDA KEGL+YD+E+D
Sbjct: 206 KNKKHPNDHLGWEWEKARGLRDGRFSRDAIEAVGWRGKLCMVNLKGDAVKEGLMYDVEKD 265

Query: 269 LWEEMPEGMVGGWRGPVAAMDEEEMYVVDEGGGCLRRYNPVGDLWEQVLQSNRLKGAVQM 328
            W++MPEGM+GGW+GPVAAMDEE MYVVDE  G LRRYNP  D+W ++L+S RL GA Q+
Sbjct: 266 TWQDMPEGMIGGWKGPVAAMDEEVMYVVDEAKGALRRYNPEKDVWVEILESERLIGADQI 325

Query: 329 AAGGGRVCIVCGGSIGEIVVVDVVASPPWLRVEPTPPGMEVVAVHVLPRMS 374
           A GGGRVC+VC    G+I+VVDV A+PP  R   TP G+E VA+H+LPRMS
Sbjct: 326 AGGGGRVCVVCR---GKILVVDVTAAPPSFRDVKTPLGLEAVAIHILPRMS 373

[Close]

BLAST of Carg16280 vs. TrEMBL
Match: tr|A0A2C9V0W4|A0A2C9V0W4_MANES (Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_11G129100 PE=4 SV=1)

HSP 1 Score: 470.7 bits (1210), Expect = 3.1e-129
Identity = 233/359 (64.90%), Postives = 282/359 (78.55%), Query Frame = 0


Query: 30  LLPGLPDHVAQLCLSRLPPSLLFSVSRSWRRLIYSPAFPPFFSIYALLSSS-----PNSL 89
           L+PGLPDH+A LCLS +PPSLLFSV  SWRRLIYSP+FPPF S+Y +LSS+      NS+
Sbjct: 36  LIPGLPDHIALLCLSCVPPSLLFSVCPSWRRLIYSPSFPPFLSLYTVLSSTDHGDLSNSI 95

Query: 90  DFFTFDPISSKWNRLPPPPNPPPLDLMIHHPSFLSRHLPVQSLAVSGHLLLLAATTQDLL 149
            FF FDPISSKW  LP       L L++ HP+F+SR++PVQS++VSG L+LLAATT +  
Sbjct: 96  QFFNFDPISSKWASLPXXXXXXXLHLLLRHPAFISRYIPVQSVSVSGQLILLAATTHNFF 155

Query: 150 PALPRPLIFSPVSNSWQFGPPLITPRRWCAAGALRGSVYVASGIGSFFSTDVARSVERWD 209
           PAL RPLIF+P++ +W FGPPL TPRRWCAAGA+ GS+YVASGIG++FS+DVA+SVE+WD
Sbjct: 156 PALSRPLIFNPLNCTWVFGPPLATPRRWCAAGAINGSIYVASGIGAYFSSDVAKSVEKWD 215

Query: 210 L---KKS---RGGGGGDWEKVSGLKDRRFSRDAIDAVGWRGKLCMVNVKGDAPKEGLVYD 269
               KK+   R G    WEKV GLKD RFSRDAIDA+GWRGKL MVNVKGDA KEGLVYD
Sbjct: 216 FLHDKKTAVVRKGSSWKWEKVKGLKDGRFSRDAIDAIGWRGKLYMVNVKGDAAKEGLVYD 275

Query: 270 LERDLWEEMPEGMVGGWRGPVAAMDEEEMYVVDEGGGCLRRYNPVGDLWEQVLQSNRLKG 329
            E+D WE+MPEGM+ GW+GPVAAMDEE +YVV+E  G L+RY+P  D WE +++S RL G
Sbjct: 276 TEKDAWEDMPEGMLAGWKGPVAAMDEEVIYVVEELKGALKRYDPERDDWEDIMESERLIG 335

Query: 330 AVQMAAGGGRVCIVCGGS-IGEIVVVDVVASPPWLRVEPTPPGMEVVAVHVLPRMSAPE 377
           A Q++AGGGRVC+VCGGS  G IVV+DVV  P  L +  TPPG E VAVH+LPRMS P+
Sbjct: 336 AQQISAGGGRVCVVCGGSNSGGIVVLDVVTDPVRLWIVETPPGFEAVAVHILPRMSQPD 394

[Close]

BLAST of Carg16280 vs. TrEMBL
Match: tr|A0A2P6PB53|A0A2P6PB53_ROSCH (Putative F-box domain, kelch-type beta propeller OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr7g0213971 PE=4 SV=1)

HSP 1 Score: 464.9 bits (1195), Expect = 1.7e-127
Identity = 227/353 (64.31%), Postives = 271/353 (76.77%), Query Frame = 0


Query: 29  PLLPGLPDHVAQLCLSRLPPSLLFSVSRSWRRLIYSPAFPPFFSIYALLS-SSPNSLDFF 88
           PLLPGLPDH+AQ CLS + P+ L+SV RSWRR+IY+ +FPPF S+YAL S SS NS+ F+
Sbjct: 29  PLLPGLPDHIAQACLSLVDPTTLYSVCRSWRRVIYTRSFPPFLSLYALFSCSSSNSIQFY 88

Query: 89  TFDPISSKWNRLPPPPNPPPLDLMIHHPSFLSRHLPVQSLAVSGHLLLLAATTQDLLPAL 148
            FDP+SSKW  LP  P  PPL L + HP+F+SR+LP+QS++ SG+L+LLAATT +  PAL
Sbjct: 89  NFDPVSSKWGALPSTPPDPPLRLFLRHPAFISRNLPIQSVSASGNLVLLAATTHNFFPAL 148

Query: 149 PRPLIFSPVSNSWQFGPPLITPRRWCAAGALRGSVYVASGIGSFFSTDVARSVERWDLKK 208
           PRPL F P ++SW FGPPL TPRRWCAAG LR +VYVASGIGS FS +VARSVE+WDL K
Sbjct: 149 PRPLNFDPSTSSWHFGPPLATPRRWCAAGTLRDAVYVASGIGSHFSVNVARSVEKWDLSK 208

Query: 209 SRGGG--------GGDWEKVSGLKDRRFSRDAIDAVGWRGKLCMVNVKGDAPKEGLVYDL 268
                        GG+WE+VS L+D RFSRDAIDAVGWRGKLCMVNVKGDA K+G+VYD 
Sbjct: 209 KNNSTSPNGSEYLGGEWERVSSLRDGRFSRDAIDAVGWRGKLCMVNVKGDALKDGVVYDA 268

Query: 269 ERDLWEEMPEGMVGGWRGPVAAMDEEEMYVVDEGGGCLRRYNPVGDLWEQVLQSNRLKGA 328
           E+D W++MPEGM+ GW GPVAAMDE+ MYVVDE  G LRRY+P  D W Q+L+S  LKGA
Sbjct: 269 EKDTWQDMPEGMIAGWTGPVAAMDEDVMYVVDEAKGALRRYDPGRDTWHQILESESLKGA 328

Query: 329 VQMAAGGGRVCIVCGGSIGEIVVVDVVASPPWLRVEPTPPGMEVVAVHVLPRM 373
            Q+AAGGGRVC VC    G IVVVDV A  P +    TP G+E VA+H+LPRM
Sbjct: 329 DQIAAGGGRVCAVCR---GRIVVVDVAAPRPRVWDVETPSGLEAVAIHILPRM 378

The following BLAST results are available for this feature:

BLAST of Carg16280 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022937172.1	7.0e-202	93.37	F-box/kelch-repeat protein SKIP25-like isoform X2 [Cucurbita moschata]	[more]
XP_022937163.1	1.6e-201	98.85	F-box/kelch-repeat protein SKIP25-like isoform X1 [Cucurbita moschata]	[more]
XP_023540479.1	1.1e-199	97.42	F-box/kelch-repeat protein SKIP25-like [Cucurbita pepo subsp. pepo]	[more]
XP_023005807.1	1.4e-194	95.99	F-box/kelch-repeat protein SKIP25-like [Cucurbita maxima]	[more]
XP_008448576.1	9.9e-164	83.19	PREDICTED: F-box/kelch-repeat protein SKIP25 [Cucumis melo]	[more]

BLAST of Carg16280 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G31350.1	1.1e-92	50.28	KAR-UP F-box 1	[more]
AT2G24540.1	2.1e-14	25.78	Galactose oxidase/kelch repeat superfamily protein	[more]
AT1G22040.1	2.0e-12	23.48	Galactose oxidase/kelch repeat superfamily protein	[more]
AT1G30090.1	7.7e-09	24.56	Galactose oxidase/kelch repeat superfamily protein	[more]
AT1G55270.1	3.0e-05	28.39	Galactose oxidase/kelch repeat superfamily protein	[more]

BLAST of Carg16280 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q8GX29\|SKI25_ARATH	2.0e-91	50.28	F-box/kelch-repeat protein SKIP25 OS=Arabidopsis thaliana OX=3702 GN=SKIP25 PE=1...	[more]
sp\|Q8LAW2\|AFR_ARATH	3.8e-13	25.78	F-box protein AFR OS=Arabidopsis thaliana OX=3702 GN=AFR PE=1 SV=2	[more]
sp\|Q9LM55\|FBK8_ARATH	3.5e-11	23.48	F-box/kelch-repeat protein At1g22040 OS=Arabidopsis thaliana OX=3702 GN=At1g2204...	[more]
sp\|Q9C6Z0\|FBK17_ARATH	1.4e-07	24.56	F-box/kelch-repeat protein At1g30090 OS=Arabidopsis thaliana OX=3702 GN=At1g3009...	[more]
sp\|Q93W93\|FBK22_ARATH	5.4e-04	28.39	F-box/kelch-repeat protein At1g55270 OS=Arabidopsis thaliana OX=3702 GN=At1g5527...	[more]

BLAST of Carg16280 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3BK00\|A0A1S3BK00_CUCME	6.6e-164	83.19	F-box/kelch-repeat protein SKIP25 OS=Cucumis melo OX=3656 GN=LOC103490713 PE=4 S...	[more]
tr\|A0A0A0L136\|A0A0A0L136_CUCSA	4.9e-159	81.16	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G003480 PE=4 SV=1	[more]
tr\|M5WZH1\|M5WZH1_PRUPE	7.1e-134	66.95	Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_5G018500 PE=4 SV=1	[more]
tr\|A0A2C9V0W4\|A0A2C9V0W4_MANES	3.1e-129	64.90	Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_11G129100 PE=4 SV=...	[more]
tr\|A0A2P6PB53\|A0A2P6PB53_ROSCH	1.7e-127	64.31	Putative F-box domain, kelch-type beta propeller OS=Rosa chinensis OX=74649 GN=R...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0005515	protein binding

Vocabulary: **INTERPRO**
Term	Definition
IPR015915	Kelch-typ_b-propeller

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0005515	protein binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg16280-RA	Carg16280-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR015915	Kelch-type beta propeller	GENE3D	G3DSA:2.120.10.80		coord: 123..350 e-value: 5.3E-17 score: 63.7
IPR015915	Kelch-type beta propeller	SUPERFAMILY	SSF117281	Kelch motif	coord: 80..345
None	No IPR available	PFAM	PF13964	Kelch_6	coord: 121..170 e-value: 1.1E-6 score: 28.6
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..24
None	No IPR available	PANTHER	PTHR24414:SF42	SUBFAMILY NOT NAMED	coord: 22..376
None	No IPR available	PANTHER	PTHR24414	FAMILY NOT NAMED	coord: 22..376

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg16280	Cla008878	Watermelon (97103) v1	carwmB0678
Carg16280	Csa3G003480	Cucumber (Chinese Long) v2	carcuB0701
Carg16280	MELO3C013784	Melon (DHL92) v3.5.1	carmeB0681
Carg16280	ClCG10G000890	Watermelon (Charleston Gray)	carwcgB0655
Carg16280	CSPI03G00920	Wild cucumber (PI 183967)	carcpiB0713
Carg16280	Cucsa.322450	Cucumber (Gy14) v1	carcgyB0759
Carg16280	CmaCh06G005940	Cucurbita maxima (Rimu)	carcmaB0957
Carg16280	CmoCh16G012670	Cucurbita moschata (Rifu)	carcmoB0932
Carg16280	CmoCh06G006000	Cucurbita moschata (Rifu)	carcmoB0933
Carg16280	Lsi07G011210	Bottle gourd (USVL1VR-Ls)	carlsiB621
Carg16280	Cp4.1LG08g09070	Cucurbita pepo (Zucchini)	carcpeB0957
Carg16280	Cp4.1LG14g10090	Cucurbita pepo (Zucchini)	carcpeB0955
Carg16280	CsGy3G000860	Cucumber (Gy14) v2	carcgybB0677
Carg16280	MELO3C013784.2	Melon (DHL92) v3.6.1	carmedB0693
Carg16280	CsaV3_3G000970	Cucumber (Chinese Long) v3	carcucB0715
Carg16280	Cla97C10G185510	Watermelon (97103) v2	carwmbB0705
Carg16280	BhiUN179G10	Wax gourd	carwgoB0798

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Carg16280	Carg19490	Silver-seed gourd	carcarB442

The following block(s) are covering this gene:


Gene	Organism	Block
Carg16280	Cucurbita maxima (Rimu)	carcmaB0956