Carg16099 (gene) Silver-seed gourd

NameCarg16099
Typegene
OrganismCucurbita argyrosperma (Silver-seed gourd)
DescriptionSterile alpha motif (SAM) domain-containing protein
LocationCucurbita_argyrosperma_scaffold_068 : 92540 .. 94126 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
AAAGAGAGAGAGAGAGAGAGAATTGAAGAGAGAAAGAGGAAATCATCAAATGATCAAAACCCTCTCAACGCTCTCTTTCATTGATTTCACTTTTCCATCTCTCGTGCGCCACTTCTGTTATGAATCAAATGTAGAGAACTTTTCGTGACCTAGATTTTTCATTTCAGGAACAAGAACAAGAAGAAGGAGAAATTCAACTTCTGTCTGGTTAGCTTCCTCAATTTCTACTTTATATGTCTTCGTTTTCTTTTTAGTTTTCTGTGAACTGAATTTTGTCTTTGAAATCATGATGAGATTTTTTGTTCTCGACTTCGTGAATTTAGGTTATCTGAAACTCGGGAGGACCTGATAGGGAGATGAACAAGGATCAGCGACCGGAACCTCTTGATTTCTTCATTTGGACTGTTGAGGTATCTCCTAATCCTCTCGCATCTCATACATCGTCTTTGATTTTGGATCTTTTGTGCAAAGATCTTAAACTGCAATTCTTCGTTGTTTGGGATTCTGCTTGAAAATCTGAACGGTTATGCGTTGAGAGTATTGGTATGGGGAGTTTGAAATTGATGGATACTGTAACCTTCCTCATTGATTGCTTATTCAAGTATTTGATCGTGATTCAGTGATACCTTCTTTTTTCTTTGTTTGTAATCTTCAATTTTTTTGATTACTGGATCAATGAGATTTGGTTATTGTGTAATTTTTTTTCCAACTCTGTTTGTTAAGATTACGGAATTAGTGTTTTGTTAGCAACTGAAAACTTTTCGAAGTAGTTGTAGATAGTGAAATGAAATAATTGAATTTATCGTCAGTCAGTGATATTTTCCTTCCCATTTGAAGTTTTGGACTTTTCCTTGTTATAGCTCCTTCCTCTTCCTTTCTTTTCTCTTTCTAGTTTTGAACTTAACAGCTAGCTTGAACTCTCCTAAATTTATTTCTCAGAAATTTTGAGTATAAGAAATTATGTTTGATGGAACTAAAGAAATTAAATTGGCAATGTCATACTGTTTCTATGTTCTTCGTTCTCAGCATGCTTCTGGATGTCACATAGTTTATTAGCTTCTTGGAGTGCAAAAATTTGTGAACATATCTTTCCAAACTGCACCCTGTTCGTCCAAGTTGGAGTGTTTATGTGTTACCATTTGGACTATACATCATATCACATTTCTCTGGATAAAATTTAACTGTGAATTGAATGAAATTTGATTTATAATATGCCTCCTTTATGCTGATTATTACGTTTTTTTTTTTAAATTTTTTTTTCCAGGATGTTGGTTTGTGGTTGGAAGAAATAAGTCTTGGAAGCTATCGCCAGATTTTTAAAGAAAATGGGGTCAATGGGGAGTATCTTGAAGGCATGTCAATGTTCACAACTGAACAGATTCTAAGGTTTATCAGACGATGCCATATGAAATGGGGAGACTTTATTACACTTTGTAAGGAACTCCGACGAATTAAAGGTCTGTGCGCGAGGCAACTTTTCTTATCTTTTTAATTCAATCTTTTTTAGGGAAAAACAATTCAGGGTTGTCTTGCTGCTACTTCCATTTCAGAAACTCCTGAATATGATTATAATGAATTAAATTAAAA

mRNA sequence

AAAGAGAGAGAGAGAGAGAGAATTGAAGAGAGAAAGAGGAAATCATCAAATGATCAAAACCCTCTCAACGCTCTCTTTCATTGATTTCACTTTTCCATCTCTCGTGCGCCACTTCTGTTATGAATCAAATGTAGAGAACTTTTCGTGACCTAGATTTTTCATTTCAGGAACAAGAACAAGAAGAAGGAGAAATTCAACTTCTGTCTGGTTATCTGAAACTCGGGAGGACCTGATAGGGAGATGAACAAGGATCAGCGACCGGAACCTCTTGATTTCTTCATTTGGACTGTTGAGGATGTTGGTTTGTGGTTGGAAGAAATAAGTCTTGGAAGCTATCGCCAGATTTTTAAAGAAAATGGGGTCAATGGGGAGTATCTTGAAGGCATGTCAATGTTCACAACTGAACAGATTCTAAGGTTTATCAGACGATGCCATATGAAATGGGGAGACTTTATTACACTTTGTAAGGAACTCCGACGAATTAAAGGTCTGTGCGCGAGGCAACTTTTCTTATCTTTTTAATTCAATCTTTTTTAGGGAAAAACAATTCAGGGTTGTCTTGCTGCTACTTCCATTTCAGAAACTCCTGAATATGATTATAATGAATTAAATTAAAA

Coding sequence (CDS)

ATGAACAAGGATCAGCGACCGGAACCTCTTGATTTCTTCATTTGGACTGTTGAGGATGTTGGTTTGTGGTTGGAAGAAATAAGTCTTGGAAGCTATCGCCAGATTTTTAAAGAAAATGGGGTCAATGGGGAGTATCTTGAAGGCATGTCAATGTTCACAACTGAACAGATTCTAAGGTTTATCAGACGATGCCATATGAAATGGGGAGACTTTATTACACTTTGTAAGGAACTCCGACGAATTAAAGGTCTGTGCGCGAGGCAACTTTTCTTATCTTTTTAA

Protein sequence

MNKDQRPEPLDFFIWTVEDVGLWLEEISLGSYRQIFKENGVNGEYLEGMSMFTTEQILRFIRRCHMKWGDFITLCKELRRIKGLCARQLFLSF
BLAST of Carg16099 vs. NCBI nr
Match: XP_022943906.1 (uncharacterized protein LOC111448490 isoform X1 [Cucurbita moschata] >XP_022986114.1 uncharacterized protein LOC111483956 [Cucurbita maxima])

HSP 1 Score: 181.8 bits (460), Expect = 1.1e-42
Identity = 83/87 (95.40%), Postives = 84/87 (96.55%), Query Frame = 0

Query: 1  MNKDQRPEPLDFFIWTVEDVGLWLEEISLGSYRQIFKENGVNGEYLEGMSMFTTEQILRF 60
          MNKDQRPEPLDFFIWTVEDVGLWLEEISLGSYRQIFKENGVNGEYLEGMSMFTTEQILRF
Sbjct: 1  MNKDQRPEPLDFFIWTVEDVGLWLEEISLGSYRQIFKENGVNGEYLEGMSMFTTEQILRF 60

Query: 61 IRRCHMKWGDFITLCKELRRIKGLCAR 88
          IRRCHMKWGDFITLCKELRRIK  C +
Sbjct: 61 IRRCHMKWGDFITLCKELRRIKVACLK 87

BLAST of Carg16099 vs. NCBI nr
Match: XP_023512133.1 (uncharacterized protein LOC111776944 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 181.8 bits (460), Expect = 1.1e-42
Identity = 83/87 (95.40%), Postives = 84/87 (96.55%), Query Frame = 0

Query: 1  MNKDQRPEPLDFFIWTVEDVGLWLEEISLGSYRQIFKENGVNGEYLEGMSMFTTEQILRF 60
          MNKDQRPEPLDFFIWTVEDVGLWLEEISLGSYRQIFKENGVNGEYLEGMSMFTTEQILRF
Sbjct: 1  MNKDQRPEPLDFFIWTVEDVGLWLEEISLGSYRQIFKENGVNGEYLEGMSMFTTEQILRF 60

Query: 61 IRRCHMKWGDFITLCKELRRIKGLCAR 88
          IRRCHMKWGDFITLCKELRRIK  C +
Sbjct: 61 IRRCHMKWGDFITLCKELRRIKVACLK 87

BLAST of Carg16099 vs. NCBI nr
Match: XP_022140752.1 (uncharacterized protein LOC111011338 [Momordica charantia] >XP_022140753.1 uncharacterized protein LOC111011338 [Momordica charantia])

HSP 1 Score: 179.1 bits (453), Expect = 6.9e-42
Identity = 81/87 (93.10%), Postives = 84/87 (96.55%), Query Frame = 0

Query: 1  MNKDQRPEPLDFFIWTVEDVGLWLEEISLGSYRQIFKENGVNGEYLEGMSMFTTEQILRF 60
          MNK+QRPEPLDFFIWTVEDVGLWLEEI+LGSYRQIFKENGVNGEYLEGMSMFTTEQILRF
Sbjct: 1  MNKEQRPEPLDFFIWTVEDVGLWLEEINLGSYRQIFKENGVNGEYLEGMSMFTTEQILRF 60

Query: 61 IRRCHMKWGDFITLCKELRRIKGLCAR 88
          IRRCHMKWGDFITLCKELRRIK  C +
Sbjct: 61 IRRCHMKWGDFITLCKELRRIKVACLK 87

BLAST of Carg16099 vs. NCBI nr
Match: XP_022943907.1 (uncharacterized protein LOC111448490 isoform X2 [Cucurbita moschata])

HSP 1 Score: 179.1 bits (453), Expect = 6.9e-42
Identity = 82/82 (100.00%), Postives = 82/82 (100.00%), Query Frame = 0

Query: 1  MNKDQRPEPLDFFIWTVEDVGLWLEEISLGSYRQIFKENGVNGEYLEGMSMFTTEQILRF 60
          MNKDQRPEPLDFFIWTVEDVGLWLEEISLGSYRQIFKENGVNGEYLEGMSMFTTEQILRF
Sbjct: 1  MNKDQRPEPLDFFIWTVEDVGLWLEEISLGSYRQIFKENGVNGEYLEGMSMFTTEQILRF 60

Query: 61 IRRCHMKWGDFITLCKELRRIK 83
          IRRCHMKWGDFITLCKELRRIK
Sbjct: 61 IRRCHMKWGDFITLCKELRRIK 82

BLAST of Carg16099 vs. NCBI nr
Match: XP_022947536.1 (uncharacterized protein LOC111451372 [Cucurbita moschata] >XP_022971132.1 uncharacterized protein LOC111469897 [Cucurbita maxima] >XP_023534569.1 uncharacterized protein LOC111796106 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 178.7 bits (452), Expect = 9.0e-42
Identity = 80/87 (91.95%), Postives = 84/87 (96.55%), Query Frame = 0

Query: 1  MNKDQRPEPLDFFIWTVEDVGLWLEEISLGSYRQIFKENGVNGEYLEGMSMFTTEQILRF 60
          MNK+QRPEPLDFFIWT+EDVGLWLEEI+LGSYRQIFKENGVNGEYLEGMSMFTTEQILRF
Sbjct: 1  MNKEQRPEPLDFFIWTIEDVGLWLEEINLGSYRQIFKENGVNGEYLEGMSMFTTEQILRF 60

Query: 61 IRRCHMKWGDFITLCKELRRIKGLCAR 88
          IRRCHMKWGDFITLCKELRRIK  C +
Sbjct: 61 IRRCHMKWGDFITLCKELRRIKVACLK 87

BLAST of Carg16099 vs. TAIR10
Match: AT3G07760.1 (Sterile alpha motif (SAM) domain-containing protein)

HSP 1 Score: 156.8 bits (395), Expect = 6.7e-39
Identity = 71/87 (81.61%), Postives = 76/87 (87.36%), Query Frame = 0

Query: 1  MNKDQRPEPLDFFIWTVEDVGLWLEEISLGSYRQIFKENGVNGEYLEGMSMFTTEQILRF 60
          M ++  PEPLDFFIWTVEDVG WLEEI+LG YRQIFKENGVNGEYLE MS+FTTEQIL F
Sbjct: 1  MTREHPPEPLDFFIWTVEDVGSWLEEINLGGYRQIFKENGVNGEYLESMSVFTTEQILHF 60

Query: 61 IRRCHMKWGDFITLCKELRRIKGLCAR 88
          IRR HMKWGDFITLCKELRRIK  C +
Sbjct: 61 IRRHHMKWGDFITLCKELRRIKVACLK 87

BLAST of Carg16099 vs. Swiss-Prot
Match: sp|P18160|SPLA_DICDI (Dual specificity protein kinase splA OS=Dictyostelium discoideum OX=44689 GN=splA PE=1 SV=3)

HSP 1 Score: 45.4 bits (106), Expect = 3.9e-04
Identity = 15/36 (41.67%), Postives = 25/36 (69.44%), Query Frame = 0

Query: 15   WTVEDVGLWLEEISLGSYRQIFKENGVNGEYLEGMS 51
            W   DV +WLE  + G YR+ F++N ++G +LEG++
Sbjct: 1734 WAPNDVAIWLESFNYGQYRKNFRDNNISGRHLEGIT 1769

BLAST of Carg16099 vs. TrEMBL
Match: tr|A0A0A0KAT3|A0A0A0KAT3_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G111390 PE=4 SV=1)

HSP 1 Score: 177.6 bits (449), Expect = 1.3e-41
Identity = 80/87 (91.95%), Postives = 83/87 (95.40%), Query Frame = 0

Query: 1  MNKDQRPEPLDFFIWTVEDVGLWLEEISLGSYRQIFKENGVNGEYLEGMSMFTTEQILRF 60
          MNK+QRPEPLDFFIWTVEDVGLWLEEI+LG YRQIFKENGVNGEYLEGMSMFTTEQILRF
Sbjct: 1  MNKEQRPEPLDFFIWTVEDVGLWLEEINLGGYRQIFKENGVNGEYLEGMSMFTTEQILRF 60

Query: 61 IRRCHMKWGDFITLCKELRRIKGLCAR 88
          IRRCHMKWGDFITLCKELRRIK  C +
Sbjct: 61 IRRCHMKWGDFITLCKELRRIKVACLK 87

BLAST of Carg16099 vs. TrEMBL
Match: tr|B3XZN9|B3XZN9_CUCME (Downward leaf curling protein OS=Cucumis melo OX=3656 GN=CmDLC PE=2 SV=1)

HSP 1 Score: 175.6 bits (444), Expect = 5.1e-41
Identity = 79/87 (90.80%), Postives = 82/87 (94.25%), Query Frame = 0

Query: 1  MNKDQRPEPLDFFIWTVEDVGLWLEEISLGSYRQIFKENGVNGEYLEGMSMFTTEQILRF 60
          MNK+QRPEPLDFFIWTVEDVGLWLEEI+LG YRQ FKENGVNGEYLEGMSMFTTEQILRF
Sbjct: 1  MNKEQRPEPLDFFIWTVEDVGLWLEEINLGGYRQTFKENGVNGEYLEGMSMFTTEQILRF 60

Query: 61 IRRCHMKWGDFITLCKELRRIKGLCAR 88
          IRRCHMKWGDFITLCKELRRIK  C +
Sbjct: 61 IRRCHMKWGDFITLCKELRRIKVACLK 87

BLAST of Carg16099 vs. TrEMBL
Match: tr|A0A0J8B559|A0A0J8B559_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris OX=3555 GN=BVRB_013620 PE=4 SV=1)

HSP 1 Score: 175.6 bits (444), Expect = 5.1e-41
Identity = 79/87 (90.80%), Postives = 83/87 (95.40%), Query Frame = 0

Query: 1  MNKDQRPEPLDFFIWTVEDVGLWLEEISLGSYRQIFKENGVNGEYLEGMSMFTTEQILRF 60
          MNKD+ PEPLDFFIWTVEDVG+WLEEI+LGSYRQIFKENGVNGEYLEGMSMFTTEQILRF
Sbjct: 1  MNKDRPPEPLDFFIWTVEDVGMWLEEINLGSYRQIFKENGVNGEYLEGMSMFTTEQILRF 60

Query: 61 IRRCHMKWGDFITLCKELRRIKGLCAR 88
          IRRCHMKWGDFITLCKELRRIK  C +
Sbjct: 61 IRRCHMKWGDFITLCKELRRIKVACLK 87

BLAST of Carg16099 vs. TrEMBL
Match: tr|A0A0B2SHY7|A0A0B2SHY7_GLYSO (Uncharacterized protein OS=Glycine soja OX=3848 GN=glysoja_025981 PE=4 SV=1)

HSP 1 Score: 174.5 bits (441), Expect = 1.1e-40
Identity = 80/84 (95.24%), Postives = 81/84 (96.43%), Query Frame = 0

Query: 1  MNKDQRPEPLDFFIWTVEDVGLWLEEISLGSYRQIFKENGVNGEYLEGMSMFTTEQILRF 60
          MNK Q PEPLDFFIWTVEDVGLWLE I+LGSYRQIFKENGVNGEYLEGMSMFTTEQILRF
Sbjct: 1  MNKGQSPEPLDFFIWTVEDVGLWLETINLGSYRQIFKENGVNGEYLEGMSMFTTEQILRF 60

Query: 61 IRRCHMKWGDFITLCKELRRIKGL 85
          IRRCHMKWGDFITLCKELRRIKGL
Sbjct: 61 IRRCHMKWGDFITLCKELRRIKGL 84

BLAST of Carg16099 vs. TrEMBL
Match: tr|A0A2R6QT90|A0A2R6QT90_ACTCH (Dual specificity protein kinase OS=Actinidia chinensis var. chinensis OX=1590841 GN=CEY00_Acc14926 PE=4 SV=1)

HSP 1 Score: 173.7 bits (439), Expect = 1.9e-40
Identity = 79/87 (90.80%), Postives = 82/87 (94.25%), Query Frame = 0

Query: 1  MNKDQRPEPLDFFIWTVEDVGLWLEEISLGSYRQIFKENGVNGEYLEGMSMFTTEQILRF 60
          MNK+  PEPLDFFIWTVEDVGLWLEEI+LGSYRQIFKENGVNGEYLEGMSMFTTEQILRF
Sbjct: 1  MNKEGPPEPLDFFIWTVEDVGLWLEEINLGSYRQIFKENGVNGEYLEGMSMFTTEQILRF 60

Query: 61 IRRCHMKWGDFITLCKELRRIKGLCAR 88
          IRRCHMKWGDFITLCKELRRIK  C +
Sbjct: 61 IRRCHMKWGDFITLCKELRRIKVACLK 87

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_022943906.11.1e-4295.40uncharacterized protein LOC111448490 isoform X1 [Cucurbita moschata] >XP_0229861... [more]
XP_023512133.11.1e-4295.40uncharacterized protein LOC111776944 [Cucurbita pepo subsp. pepo][more]
XP_022140752.16.9e-4293.10uncharacterized protein LOC111011338 [Momordica charantia] >XP_022140753.1 uncha... [more]
XP_022943907.16.9e-42100.00uncharacterized protein LOC111448490 isoform X2 [Cucurbita moschata][more]
XP_022947536.19.0e-4291.95uncharacterized protein LOC111451372 [Cucurbita moschata] >XP_022971132.1 unchar... [more]
Match NameE-valueIdentityDescription
AT3G07760.16.7e-3981.61Sterile alpha motif (SAM) domain-containing protein[more]
Match NameE-valueIdentityDescription
sp|P18160|SPLA_DICDI3.9e-0441.67Dual specificity protein kinase splA OS=Dictyostelium discoideum OX=44689 GN=spl... [more]
Match NameE-valueIdentityDescription
tr|A0A0A0KAT3|A0A0A0KAT3_CUCSA1.3e-4191.95Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G111390 PE=4 SV=1[more]
tr|B3XZN9|B3XZN9_CUCME5.1e-4190.80Downward leaf curling protein OS=Cucumis melo OX=3656 GN=CmDLC PE=2 SV=1[more]
tr|A0A0J8B559|A0A0J8B559_BETVU5.1e-4190.80Uncharacterized protein OS=Beta vulgaris subsp. vulgaris OX=3555 GN=BVRB_013620 ... [more]
tr|A0A0B2SHY7|A0A0B2SHY7_GLYSO1.1e-4095.24Uncharacterized protein OS=Glycine soja OX=3848 GN=glysoja_025981 PE=4 SV=1[more]
tr|A0A2R6QT90|A0A2R6QT90_ACTCH1.9e-4090.80Dual specificity protein kinase OS=Actinidia chinensis var. chinensis OX=1590841... [more]
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
Vocabulary: INTERPRO
TermDefinition
IPR013761SAM/pointed_sf
IPR001660SAM
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0005515 protein binding

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg16099-RACarg16099-RAmRNA


Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3DG3DSA:1.10.150.50coord: 12..84
e-value: 2.1E-9
score: 39.6
IPR001660Sterile alpha motif domainPFAMPF07647SAM_2coord: 15..51
e-value: 8.5E-8
score: 32.1
IPR001660Sterile alpha motif domainPROSITEPS50105SAM_DOMAINcoord: 15..50
score: 11.239
IPR013761Sterile alpha motif/pointed domain superfamilySUPERFAMILYSSF47769SAM/Pointed domaincoord: 7..84

The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
Carg16099Carg05149Silver-seed gourdcarcarB372