Carg15935 (gene) Silver-seed gourd
The following sequences are available for this feature:
Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.ATTCGGGTGAGACGATTTGTCGTCTTATCTACGTTCGAACGAGAGAGCCCACTGAATTGCCGGAGAGCGAATTGCCGCCGTATACCGGGGAAAAATCCGACGGCACCGAATAGTTCGCAATCTTCCGATTACCGAACTCACTTTCTTCTTCTTCTTCATTGACTCGTCCTCCATGAACGTTCCGTACAATTCTTTTCGAACAGTCACCTATCCTCTTCCGTCCCCCATTCATGTTCCTAAATCCCTAGTGGCCCCGAAATTTACCTCACTTTCAGCCGCCCTAAATTCAGGCAAAGTTGGATGCTGGAAAATCGTCCTTAAGCCAGTGAGGAAGACGTTTTTTATTGTTAGAGCTTCCAAGAGTGATGATGCTGGAGCTGAGAAGTGGCTGAAATGGTTACCGAAGGGAGCTTTAGCCGCCGATAAAGTCTTGCGCGGCATTGCCGGTGCAACCGCCAGCCCTATCAGCCAGTTCATCTCGTCGCCGGTCACTTTTCTTCACTCTGTAGACTCGCGAATCAAATTGGTAATTTCATTTTTGTAGTTTATCGATGCAAAAATCTTGGATAATAAGCTTTGAGAATTGACTAATCATGCTATATGTAATGAATTTATTCTTCCTCTGTACCTTTGTTTGTTCTATGAATCTCGGTTGATTGCTCGTTTTGTTTGGCAGATATGGCTTTTGGCTCTTGTTGTCTTACCAGCAAGATCAAACATCACAATCCGTTTTGGATTAGTGATTTTCTTGGCTTTCCTATCCATATGGACTCTTCCAACCGAGTTATGGAAGGTACATTTCTATCAAACGCGTTATATGATTCATATAATTCTTTCAATCAGTGAAAATCAGGGCCTACATTTCATTCCATTGGATGGAACAATGTGATAACAGTGGAGGGATTCTCTTACTTTTTAGGATCAACTGGGAAGAGTTTCTCTACTCTCAGGAATTTTGTTCATCATGTTGGGGCTGGGTGCAGATGGAGTGCCATCCCTCCTCCAATCAAGAACTCCTCCACCTGGAATGATGGGATTGCCTGAGCTTCCTGCCTCTCTGGGAGGTTACTCTTATTTAATTGCAAAACTTGGCCCTTTAACTTTTACGAGGAAGGGCTTGTCAATAGCAAGTACATCAGCATGTTTAACTTTTGTTGTAAGTTGAATATCCTTAGATTTTGCTTTAACACTTCATTTATGGTAAAAGAAAGTGCAACTAAACTGAATTACTTGGCTTTATGTTACCTGAAAGGATCGGTTCGTTTGGTTTGATTGTTCTTGAAGGTCTTCCAAAGTGCAAGTCTCTGCCTCACAACCACAGCCCCCGAGCAACTTGCATTCGCCATTCGATGGTTTATGCTTCCTTTGGTGTATTTCGGCGTTCCAGTTGCTGAAATCACCCTTACACTTTTACTTTCTTTGAGATTTGTCAGTCTGGTGTTTGATGAGGTAAGAGATTGATTGTTTAGTGGCATTCATTGGCTCATTTGTTATGTTTTTGCCATTTACGAAACTTGCCATGTTGCTGCCAGGTTCGAAATGTTGCGTTAGGGGTTGTATCCCGCAGGATAAACTGGGAACTATTGACCACAATGGAGTCGGTTGACGGTAAGCATCAAGTAACAATGCCAACATGCATACATCAAAAGCATAACCTTCTTAGTTGAATACTTGTGTAGCATGGGGAAGTTCTTGTCGTGATTTGTAGACGTAGAAATATTAATGTAGAACAGCTTTATCCGAGGAACTTCGGGGCGATATTTTTTCCCCAAAATTTTATTGTGCAAATGCTTCTTGATTTGAAGCATTTCATTATTCAAATTATCATGCCCTAGGCTGATAATCTTCAATGTTAACTTTAACGCCATTATGTCACATTTCATTCAAAGTGCTTTGCTTTAAAATCATTATATCATTGAAATGCTTACTTGTTTTCGTTTTCCGTGCAGTTTTCTTTACTTATCTCCGTCGCATTTTCAAAAATATTTTTAGCCATGCAGAGCAGATTTCTCAGGTAGCCTATTCACTGCATATAACTGATCATTTCGTCATTTACTGTGTGCAGTCTGTGTTATCAAAAGGCTATGTTTCTAATCATCAATTTTCTCTTGGGACTTCTTTAGATTCTTGGTGTAAATGCTCACCCTTTTTAGCTCTTACCACCGACTGCCACACCCACGCCCCAAGCATATGCCCATGTGCGGCGCATTGTGCTTGGGGCGTGGGCGTGGCGGGTGCCATAGAGGTACTCCCGTGCCTAGCTCAAGCAGACTAGTCACCCCCTATATAATACATTTTCAGTCATTTTTGGTCTGTCAGGCATAGACATTATTTTTTTGATCGGTCACACGATCTTTTGACCAACTCTTTTTGGTTGGGCTTTGCCCTATATATATATATACACACATATATATCTTTTCTCTTTTCTCTTTTCTTTTTACGGAAAACAAATTTCATTTATGTATGAAATTTACAATAGAAGGGCAAAGCCCAACCGAAAGGAGTATTTTTTTTTTCTTTTTTCGCTATCAAGATGCCCCAAGGTTCTTAGATGAGGTCTTGGTTCATACCCAAGTTAAACTTAATAATTTAGATCCTGATTGATAATCATTTGGTTTTTGTTCATAATAATCTCACTATAAATTAGCAAAAATGGGCAATAAACATAATGCAAGGAATGGAACTCCCACATCATGCCCTCGGTTATTAAAAGACTAGAGTCGAAATGGCTATCATGATCATCTAGAGCAAGAATTCTGATTTAACATGAATTTATTTTGTTACTTGCTTTTAATCTTTCAATTCTCTATTTATCTGTTATATGTTATGGATGTGCTTCCAATGTACTGGTATTAGCTCACTTACGAGTTGATCGATTCCTTAAACTTGTCTTCTTGTAAGAAATCCATACCGAACGATTACCTGAAATGTAGAGATGCCTTGAGCTACTGTAATAAGCACCCTAAGAATCGCCCTTCTTCGTTCTTTTAAATTTGTATCTCTATGCCTTTCGGCTCATCTTTTGAAATTTTTTGTTGCATTTTCGTTTATGTCGAACGAACTTTTGATTCATTGACTTATGCTGCAGGCAATGATTGTAAGAGGTTTCCGAGGGGATAGCAGCAGTCATAAGCTGTATTTCTTATCAAACTCATCAAGCAGAGTGGCAAATATTCTCTCCCTGTTGTGCCTGATTGGTGTCATCAGTGCTTCTGTTTTCTTTGACAAAGTCATCATCTGATACCTTCATCCACTTTTTGCTATCTAACAATTCGATGCGAGTCTCTCTAACGCTATCTTAGGTCCCGTTTAATAACTATTCGAAAAATTTGCTCGTTTCCCTCCACAAGTTCTTGGCAACCTTTTCACCTTATTTAATACATGATCATCAAATTGA ATTCGGGTGAGACGATTTGTCGTCTTATCTACGTTCGAACGAGAGAGCCCACTGAATTGCCGGAGAGCGAATTGCCGCCGTATACCGGGGAAAAATCCGACGGCACCGAATAGTTCGCAATCTTCCGATTACCGAACTCACTTTCTTCTTCTTCTTCATTGACTCGTCCTCCATGAACGTTCCGTACAATTCTTTTCGAACAGTCACCTATCCTCTTCCGTCCCCCATTCATGTTCCTAAATCCCTAGTGGCCCCGAAATTTACCTCACTTTCAGCCGCCCTAAATTCAGGCAAAGTTGGATGCTGGAAAATCGTCCTTAAGCCAGTGAGGAAGACGTTTTTTATTGTTAGAGCTTCCAAGAGTGATGATGCTGGAGCTGAGAAGTGGCTGAAATGGTTACCGAAGGGAGCTTTAGCCGCCGATAAAGTCTTGCGCGGCATTGCCGGTGCAACCGCCAGCCCTATCAGCCAGTTCATCTCGTCGCCGGTCACTTTTCTTCACTCTGTAGACTCGCGAATCAAATTGATATGGCTTTTGGCTCTTGTTGTCTTACCAGCAAGATCAAACATCACAATCCGTTTTGGATTAGTGATTTTCTTGGCTTTCCTATCCATATGGACTCTTCCAACCGAGTTATGGAAGGATCAACTGGGAAGAGTTTCTCTACTCTCAGGAATTTTGTTCATCATGTTGGGGCTGGGTGCAGATGGAGTGCCATCCCTCCTCCAATCAAGAACTCCTCCACCTGGAATGATGGGATTGCCTGAGCTTCCTGCCTCTCTGGGAGGTTACTCTTATTTAATTGCAAAACTTGGCCCTTTAACTTTTACGAGGAAGGGCTTGTCAATAGCAAGTACATCAGCATGTTTAACTTTTGTTGTCTTCCAAAGTGCAAGTCTCTGCCTCACAACCACAGCCCCCGAGCAACTTGCATTCGCCATTCGATGGTTTATGCTTCCTTTGGTGTATTTCGGCGTTCCAGTTGCTGAAATCACCCTTACACTTTTACTTTCTTTGAGATTTGTCAGTCTGGTGTTTGATGAGGTTCGAAATGTTGCGTTAGGGGTTGTATCCCGCAGGATAAACTGGGAACTATTGACCACAATGGAGTCGGTTGACGTTTTCTTTACTTATCTCCGTCGCATTTTCAAAAATATTTTTAGCCATGCAGAGCAGATTTCTCAGGCAATGATTGTAAGAGGTTTCCGAGGGGATAGCAGCAGTCATAAGCTGTATTTCTTATCAAACTCATCAAGCAGAGTGGCAAATATTCTCTCCCTGTTGTGCCTGATTGGTGTCATCAGTGCTTCTGTTTTCTTTGACAAAGTCATCATCTGATACCTTCATCCACTTTTTGCTATCTAACAATTCGATGCGAGTCTCTCTAACGCTATCTTAGGTCCCGTTTAATAACTATTCGAAAAATTTGCTCGTTTCCCTCCACAAGTTCTTGGCAACCTTTTCACCTTATTTAATACATGATCATCAAATTGA ATGAACGTTCCGTACAATTCTTTTCGAACAGTCACCTATCCTCTTCCGTCCCCCATTCATGTTCCTAAATCCCTAGTGGCCCCGAAATTTACCTCACTTTCAGCCGCCCTAAATTCAGGCAAAGTTGGATGCTGGAAAATCGTCCTTAAGCCAGTGAGGAAGACGTTTTTTATTGTTAGAGCTTCCAAGAGTGATGATGCTGGAGCTGAGAAGTGGCTGAAATGGTTACCGAAGGGAGCTTTAGCCGCCGATAAAGTCTTGCGCGGCATTGCCGGTGCAACCGCCAGCCCTATCAGCCAGTTCATCTCGTCGCCGGTCACTTTTCTTCACTCTGTAGACTCGCGAATCAAATTGATATGGCTTTTGGCTCTTGTTGTCTTACCAGCAAGATCAAACATCACAATCCGTTTTGGATTAGTGATTTTCTTGGCTTTCCTATCCATATGGACTCTTCCAACCGAGTTATGGAAGGATCAACTGGGAAGAGTTTCTCTACTCTCAGGAATTTTGTTCATCATGTTGGGGCTGGGTGCAGATGGAGTGCCATCCCTCCTCCAATCAAGAACTCCTCCACCTGGAATGATGGGATTGCCTGAGCTTCCTGCCTCTCTGGGAGGTTACTCTTATTTAATTGCAAAACTTGGCCCTTTAACTTTTACGAGGAAGGGCTTGTCAATAGCAAGTACATCAGCATGTTTAACTTTTGTTGTCTTCCAAAGTGCAAGTCTCTGCCTCACAACCACAGCCCCCGAGCAACTTGCATTCGCCATTCGATGGTTTATGCTTCCTTTGGTGTATTTCGGCGTTCCAGTTGCTGAAATCACCCTTACACTTTTACTTTCTTTGAGATTTGTCAGTCTGGTGTTTGATGAGGTTCGAAATGTTGCGTTAGGGGTTGTATCCCGCAGGATAAACTGGGAACTATTGACCACAATGGAGTCGGTTGACGTTTTCTTTACTTATCTCCGTCGCATTTTCAAAAATATTTTTAGCCATGCAGAGCAGATTTCTCAGGCAATGATTGTAAGAGGTTTCCGAGGGGATAGCAGCAGTCATAAGCTGTATTTCTTATCAAACTCATCAAGCAGAGTGGCAAATATTCTCTCCCTGTTGTGCCTGATTGGTGTCATCAGTGCTTCTGTTTTCTTTGACAAAGTCATCATCTGA MNVPYNSFRTVTYPLPSPIHVPKSLVAPKFTSLSAALNSGKVGCWKIVLKPVRKTFFIVRASKSDDAGAEKWLKWLPKGALAADKVLRGIAGATASPISQFISSPVTFLHSVDSRIKLIWLLALVVLPARSNITIRFGLVIFLAFLSIWTLPTELWKDQLGRVSLLSGILFIMLGLGADGVPSLLQSRTPPPGMMGLPELPASLGGYSYLIAKLGPLTFTRKGLSIASTSACLTFVVFQSASLCLTTTAPEQLAFAIRWFMLPLVYFGVPVAEITLTLLLSLRFVSLVFDEVRNVALGVVSRRINWELLTTMESVDVFFTYLRRIFKNIFSHAEQISQAMIVRGFRGDSSSHKLYFLSNSSSRVANILSLLCLIGVISASVFFDKVII
BLAST of Carg15935 vs. NCBI nr
Match: XP_022930213.1 (protein ABCI12, chloroplastic [Cucurbita moschata]) HSP 1 Score: 737.6 bits (1903), Expect = 2.1e-209 Identity = 388/388 (100.00%), Postives = 388/388 (100.00%), Query Frame = 0
BLAST of Carg15935 vs. NCBI nr
Match: XP_023000163.1 (protein ABCI12, chloroplastic [Cucurbita maxima]) HSP 1 Score: 736.1 bits (1899), Expect = 6.1e-209 Identity = 387/388 (99.74%), Postives = 387/388 (99.74%), Query Frame = 0
BLAST of Carg15935 vs. NCBI nr
Match: XP_023522749.1 (protein ABCI12, chloroplastic-like [Cucurbita pepo subsp. pepo]) HSP 1 Score: 731.5 bits (1887), Expect = 1.5e-207 Identity = 384/388 (98.97%), Postives = 386/388 (99.48%), Query Frame = 0
BLAST of Carg15935 vs. NCBI nr
Match: XP_023513623.1 (protein ABCI12, chloroplastic-like [Cucurbita pepo subsp. pepo]) HSP 1 Score: 730.7 bits (1885), Expect = 2.6e-207 Identity = 384/388 (98.97%), Postives = 386/388 (99.48%), Query Frame = 0
BLAST of Carg15935 vs. NCBI nr
Match: XP_022138671.1 (protein ABCI12, chloroplastic [Momordica charantia] >XP_022138672.1 protein ABCI12, chloroplastic [Momordica charantia]) HSP 1 Score: 662.9 bits (1709), Expect = 6.6e-187 Identity = 350/391 (89.51%), Postives = 366/391 (93.61%), Query Frame = 0
BLAST of Carg15935 vs. TAIR10
Match: AT3G21580.1 (cobalt ion transmembrane transporters) HSP 1 Score: 427.9 bits (1099), Expect = 6.5e-120 Identity = 227/386 (58.81%), Postives = 284/386 (73.58%), Query Frame = 0
BLAST of Carg15935 vs. Swiss-Prot
Match: sp|Q944H2|AB12I_ARATH (Protein ABCI12, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=ABCI12 PE=1 SV=1) HSP 1 Score: 427.9 bits (1099), Expect = 1.2e-118 Identity = 227/386 (58.81%), Postives = 284/386 (73.58%), Query Frame = 0
BLAST of Carg15935 vs. Swiss-Prot
Match: sp|Q8YZH6|YC92L_NOSS1 (Ycf92-like protein OS=Nostoc sp. (strain PCC 7120 / SAG 25.82 / UTEX 2576) OX=103690 GN=alr0484 PE=3 SV=1) HSP 1 Score: 139.8 bits (351), Expect = 6.3e-32 Identity = 90/261 (34.48%), Postives = 142/261 (54.41%), Query Frame = 0
BLAST of Carg15935 vs. Swiss-Prot
Match: sp|Q8G838|Y043_BIFLO (Putative ABC transporter ATP-binding protein BL0043 OS=Bifidobacterium longum (strain NCC 2705) OX=206672 GN=BL0043 PE=3 SV=2) HSP 1 Score: 63.5 bits (153), Expect = 5.8e-09 Identity = 69/273 (25.27%), Postives = 118/273 (43.22%), Query Frame = 0
BLAST of Carg15935 vs. Swiss-Prot
Match: sp|B8I813|ECFT_CLOCE (Energy-coupling factor transporter transmembrane protein EcfT OS=Clostridium cellulolyticum (strain ATCC 35319 / DSM 5812 / JCM 6584 / H10) OX=394503 GN=ecfT PE=3 SV=1) HSP 1 Score: 58.2 bits (139), Expect = 2.4e-07 Identity = 41/140 (29.29%), Postives = 70/140 (50.00%), Query Frame = 0
BLAST of Carg15935 vs. Swiss-Prot
Match: sp|D8MHM9|ECFT_LEUGG (Energy-coupling factor transporter transmembrane protein EcfT OS=Leuconostoc gelidum subsp. gasicomitatum (strain DSM 15947 / CECT 5767 / JCM 12535 / LMG 18811 / TB1-10) OX=762550 GN=ecfT PE=3 SV=1) HSP 1 Score: 53.5 bits (127), Expect = 6.0e-06 Identity = 64/255 (25.10%), Postives = 109/255 (42.75%), Query Frame = 0
BLAST of Carg15935 vs. TrEMBL
Match: tr|A0A1S3C8N5|A0A1S3C8N5_CUCME (protein ABCI12, chloroplastic isoform X1 OS=Cucumis melo OX=3656 GN=LOC103497915 PE=4 SV=1) HSP 1 Score: 656.4 bits (1692), Expect = 4.1e-185 Identity = 346/391 (88.49%), Postives = 366/391 (93.61%), Query Frame = 0
BLAST of Carg15935 vs. TrEMBL
Match: tr|A0A0A0KBD7|A0A0A0KBD7_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G061750 PE=4 SV=1) HSP 1 Score: 655.6 bits (1690), Expect = 7.0e-185 Identity = 346/391 (88.49%), Postives = 366/391 (93.61%), Query Frame = 0
BLAST of Carg15935 vs. TrEMBL
Match: tr|A0A1S4E214|A0A1S4E214_CUCME (protein ABCI12, chloroplastic isoform X2 OS=Cucumis melo OX=3656 GN=LOC103497915 PE=4 SV=1) HSP 1 Score: 570.9 bits (1470), Expect = 2.3e-159 Identity = 298/341 (87.39%), Postives = 316/341 (92.67%), Query Frame = 0
BLAST of Carg15935 vs. TrEMBL
Match: tr|A0A1S3C9B4|A0A1S3C9B4_CUCME (protein ABCI12, chloroplastic isoform X3 OS=Cucumis melo OX=3656 GN=LOC103497915 PE=4 SV=1) HSP 1 Score: 528.9 bits (1361), Expect = 9.8e-147 Identity = 276/319 (86.52%), Postives = 294/319 (92.16%), Query Frame = 0
BLAST of Carg15935 vs. TrEMBL
Match: tr|A0A2I4G9I1|A0A2I4G9I1_9ROSI (protein ABCI12, chloroplastic OS=Juglans regia OX=51240 GN=LOC109005916 PE=4 SV=1) HSP 1 Score: 498.8 bits (1283), Expect = 1.1e-137 Identity = 266/390 (68.21%), Postives = 316/390 (81.03%), Query Frame = 0
The following BLAST results are available for this feature:
The following terms have been associated with this gene:
GO Assignments
This gene is annotated with the following GO terms.
The following mRNA feature(s) are a part of this gene:
Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
The following gene(s) are orthologous to this gene:
The following gene(s) are paralogous to this gene: None The following block(s) are covering this gene: |