Carg15443 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg15443
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	stress-associated endoplasmic reticulum protein 2-like
Location	Cucurbita_argyrosperma_scaffold_069 : 206486 .. 206849 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTAATTTTCCTTTCTTCTTTAATCCATTCTTCTTCCTTACCTTCGATTATTTTCTCCTCTAGGGTTTTGTGTTGCAGATTTGATCTGTGGTTTGATTTTTGGATTTTGTTTCCGGATTTGATGTGATTTTCGTTTTCGATTTATGATTTTGATTTTATGGAAATTTCAGACGACATCACGGCGTTTTGCGGATAGGAAGGTTGAGAGGTTCGAGAAGAACATTTTGAAGAGAGGGGCCGTGCCCGAGACTGCTACGAAGAAGGGAAAGGACTACCCCGTTGGGCCTCTTCTTCTTGGATTCTTCGTTTTTGTCGTCATTGGATCATGTGAGTTTTTCCTTGCTCGCTCTTCGAGATTCTGA

mRNA sequence

ATGACGACATCACGGCGTTTTGCGGATAGGAAGGTTGAGAGGTTCGAGAAGAACATTTTGAAGAGAGGGGCCGTGCCCGAGACTGCTACGAAGAAGGGAAAGGACTACCCCGTTGGGCCTCTTCTTCTTGGATTCTTCGTTTTTGTCGTCATTGGATCATGTGAGTTTTTCCTTGCTCGCTCTTCGAGATTCTGA

Coding sequence (CDS)

ATGACGACATCACGGCGTTTTGCGGATAGGAAGGTTGAGAGGTTCGAGAAGAACATTTTGAAGAGAGGGGCCGTGCCCGAGACTGCTACGAAGAAGGGAAAGGACTACCCCGTTGGGCCTCTTCTTCTTGGATTCTTCGTTTTTGTCGTCATTGGATCATGTGAGTTTTTCCTTGCTCGCTCTTCGAGATTCTGA

Protein sequence

MTTSRRFADRKVERFEKNILKRGAVPETATKKGKDYPVGPLLLGFFVFVVIGSCEFFLARSSRF

Homology

[Close]

BLAST of Carg15443 vs. NCBI nr
Match: XP_022932563.1 (stress-associated endoplasmic reticulum protein 2-like isoform X2 [Cucurbita moschata] >XP_022972333.1 stress-associated endoplasmic reticulum protein 2-like [Cucurbita maxima] >XP_023538872.1 stress-associated endoplasmic reticulum protein 2-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 110.9 bits (276), Expect = 1.6e-21
Identity = 55/62 (88.71%), Postives = 58/62 (93.55%), Query Frame = 0


Query: 1  MTTSRRFADRKVERFEKNILKRGAVPETATKKGKDYPVGPLLLGFFVFVVIGSCEFFLAR 60
          MTTSRRFADRKVERFEKNILKRGAVPETATKKGKDYPVGPLLLGFFVFVVIGS  F + R
Sbjct: 1  MTTSRRFADRKVERFEKNILKRGAVPETATKKGKDYPVGPLLLGFFVFVVIGSSLFQIIR 60

Query: 61 SS 63
          ++
Sbjct: 61 TA 62

[Close]

BLAST of Carg15443 vs. NCBI nr
Match: XP_022932562.1 (stress-associated endoplasmic reticulum protein 2-like isoform X1 [Cucurbita moschata])

HSP 1 Score: 109.0 bits (271), Expect = 6.0e-21
Identity = 54/61 (88.52%), Postives = 57/61 (93.44%), Query Frame = 0


Query: 2  TTSRRFADRKVERFEKNILKRGAVPETATKKGKDYPVGPLLLGFFVFVVIGSCEFFLARS 61
          TTSRRFADRKVERFEKNILKRGAVPETATKKGKDYPVGPLLLGFFVFVVIGS  F + R+
Sbjct: 10 TTSRRFADRKVERFEKNILKRGAVPETATKKGKDYPVGPLLLGFFVFVVIGSSLFQIIRT 69

Query: 62 S 63
          +
Sbjct: 70 A 70

[Close]

BLAST of Carg15443 vs. NCBI nr
Match: XP_004152134.1 (PREDICTED: stress-associated endoplasmic reticulum protein 2-like [Cucumis sativus] >KGN53016.1 Stress associated endoplasmic reticulum protein [Cucumis sativus])

HSP 1 Score: 107.8 bits (268), Expect = 1.3e-20
Identity = 53/62 (85.48%), Postives = 57/62 (91.94%), Query Frame = 0


Query: 1  MTTSRRFADRKVERFEKNILKRGAVPETATKKGKDYPVGPLLLGFFVFVVIGSCEFFLAR 60
          MTTSRR ADRKVERFEKNILKRGAVPETATKKGKDYPVGP+LLGFFVFVVIGS  F + R
Sbjct: 1  MTTSRRLADRKVERFEKNILKRGAVPETATKKGKDYPVGPILLGFFVFVVIGSSLFQIIR 60

Query: 61 SS 63
          ++
Sbjct: 61 TA 62

[Close]

BLAST of Carg15443 vs. NCBI nr
Match: XP_022956326.1 (stress-associated endoplasmic reticulum protein 2-like [Cucurbita moschata] >XP_022979456.1 stress-associated endoplasmic reticulum protein 2-like [Cucurbita maxima] >XP_023526291.1 stress-associated endoplasmic reticulum protein 2-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 107.1 bits (266), Expect = 2.3e-20
Identity = 53/62 (85.48%), Postives = 56/62 (90.32%), Query Frame = 0


Query: 1  MTTSRRFADRKVERFEKNILKRGAVPETATKKGKDYPVGPLLLGFFVFVVIGSCEFFLAR 60
          MTTSRR ADRKVERFEKNILKRGAVPET TKKGKDYPVGPLLLGFFVFVVIGS  F + R
Sbjct: 1  MTTSRRLADRKVERFEKNILKRGAVPETTTKKGKDYPVGPLLLGFFVFVVIGSSLFQIIR 60

Query: 61 SS 63
          ++
Sbjct: 61 TA 62

[Close]

BLAST of Carg15443 vs. NCBI nr
Match: XP_022158961.1 (stress-associated endoplasmic reticulum protein 2-like [Momordica charantia])

HSP 1 Score: 106.7 bits (265), Expect = 3.0e-20
Identity = 52/62 (83.87%), Postives = 57/62 (91.94%), Query Frame = 0


Query: 1  MTTSRRFADRKVERFEKNILKRGAVPETATKKGKDYPVGPLLLGFFVFVVIGSCEFFLAR 60
          MTTSRR ADRKVERFEKNILKRG+VPETATKKGKDYPVGP+LLGFFVFVVIGS  F + R
Sbjct: 1  MTTSRRLADRKVERFEKNILKRGSVPETATKKGKDYPVGPILLGFFVFVVIGSSLFQIIR 60

Query: 61 SS 63
          ++
Sbjct: 61 TA 62

[Close]

BLAST of Carg15443 vs. TAIR10
Match: AT1G27350.1 (Ribosome associated membrane protein RAMP4)

HSP 1 Score: 100.1 bits (248), Expect = 5.1e-22
Identity = 47/62 (75.81%), Postives = 55/62 (88.71%), Query Frame = 0


Query: 1  MTTSRRFADRKVERFEKNILKRGAVPETATKKGKDYPVGPLLLGFFVFVVIGSCEFFLAR 60
          MTTS+R ADRK+E+F+KNILKRG VPET TKKGKDYPVGP+LLGFFVFVVIGS  F + R
Sbjct: 1  MTTSKRLADRKIEKFDKNILKRGFVPETTTKKGKDYPVGPILLGFFVFVVIGSSLFQIIR 60

Query: 61 SS 63
          ++
Sbjct: 61 TA 62

[Close]

BLAST of Carg15443 vs. TAIR10
Match: AT1G27330.1 (Ribosome associated membrane protein RAMP4)

HSP 1 Score: 100.1 bits (248), Expect = 5.1e-22
Identity = 47/62 (75.81%), Postives = 55/62 (88.71%), Query Frame = 0


Query: 1  MTTSRRFADRKVERFEKNILKRGAVPETATKKGKDYPVGPLLLGFFVFVVIGSCEFFLAR 60
          MTTS+R ADRK+E+F+KNILKRG VPET TKKGKDYPVGP+LLGFFVFVVIGS  F + R
Sbjct: 1  MTTSKRLADRKIEKFDKNILKRGFVPETTTKKGKDYPVGPILLGFFVFVVIGSSLFQIIR 60

Query: 61 SS 63
          ++
Sbjct: 61 TA 62

[Close]

BLAST of Carg15443 vs. Swiss-Prot
Match: sp|Q3T073|SERP2_BOVIN (Stress-associated endoplasmic reticulum protein 2 OS=Bos taurus OX=9913 GN=SERP2 PE=3 SV=1)

HSP 1 Score: 49.3 bits (116), Expect = 1.9e-05
Identity = 25/51 (49.02%), Postives = 32/51 (62.75%), Query Frame = 0


Query: 13 ERFEKNILKRGAVPETATKKGKDYPVGPLLLGFFVFVVIGSCEFFLARSSR 64
          E+  KNI +RG V +T   + + YPVGP LL  FVFVV GS  F + +S R
Sbjct: 12 EKHSKNITQRGNVAKTLRPQEEKYPVGPWLLALFVFVVCGSAIFQIIQSIR 62

[Close]

BLAST of Carg15443 vs. Swiss-Prot
Match: sp|Q8N6R1|SERP2_HUMAN (Stress-associated endoplasmic reticulum protein 2 OS=Homo sapiens OX=9606 GN=SERP2 PE=1 SV=1)

HSP 1 Score: 49.3 bits (116), Expect = 1.9e-05
Identity = 25/51 (49.02%), Postives = 32/51 (62.75%), Query Frame = 0


Query: 13 ERFEKNILKRGAVPETATKKGKDYPVGPLLLGFFVFVVIGSCEFFLARSSR 64
          E+  KNI +RG V +T   + + YPVGP LL  FVFVV GS  F + +S R
Sbjct: 12 EKHSKNITQRGNVAKTLRPQEEKYPVGPWLLALFVFVVCGSAIFQIIQSIR 62

[Close]

BLAST of Carg15443 vs. Swiss-Prot
Match: sp|Q6TAW2|SERP2_MOUSE (Stress-associated endoplasmic reticulum protein 2 OS=Mus musculus OX=10090 GN=Serp2 PE=3 SV=2)

HSP 1 Score: 49.3 bits (116), Expect = 1.9e-05
Identity = 25/51 (49.02%), Postives = 32/51 (62.75%), Query Frame = 0


Query: 13 ERFEKNILKRGAVPETATKKGKDYPVGPLLLGFFVFVVIGSCEFFLARSSR 64
          E+  KNI +RG V +T   + + YPVGP LL  FVFVV GS  F + +S R
Sbjct: 12 EKHSKNITQRGNVAKTLRPQEEKYPVGPWLLALFVFVVCGSAIFQIIQSIR 62

[Close]

BLAST of Carg15443 vs. TrEMBL
Match: tr|A0A0A0KYW0|A0A0A0KYW0_CUCSA (Stress associated endoplasmic reticulum protein OS=Cucumis sativus OX=3659 GN=Csa_4G011630 PE=4 SV=1)

HSP 1 Score: 107.8 bits (268), Expect = 8.9e-21
Identity = 53/62 (85.48%), Postives = 57/62 (91.94%), Query Frame = 0


Query: 1  MTTSRRFADRKVERFEKNILKRGAVPETATKKGKDYPVGPLLLGFFVFVVIGSCEFFLAR 60
          MTTSRR ADRKVERFEKNILKRGAVPETATKKGKDYPVGP+LLGFFVFVVIGS  F + R
Sbjct: 1  MTTSRRLADRKVERFEKNILKRGAVPETATKKGKDYPVGPILLGFFVFVVIGSSLFQIIR 60

Query: 61 SS 63
          ++
Sbjct: 61 TA 62

[Close]

BLAST of Carg15443 vs. TrEMBL
Match: tr|A0A2I4FYQ4|A0A2I4FYQ4_9ROSI (stress-associated endoplasmic reticulum protein 2-like OS=Juglans regia OX=51240 GN=LOC109003195 PE=4 SV=1)

HSP 1 Score: 105.5 bits (262), Expect = 4.4e-20
Identity = 51/62 (82.26%), Postives = 56/62 (90.32%), Query Frame = 0


Query: 1  MTTSRRFADRKVERFEKNILKRGAVPETATKKGKDYPVGPLLLGFFVFVVIGSCEFFLAR 60
          MTTSRR ADRKVERFEKNILKRGAVPET TKKGKDYPVGP+LLGFF+FVVIGS  F + R
Sbjct: 1  MTTSRRLADRKVERFEKNILKRGAVPETTTKKGKDYPVGPVLLGFFIFVVIGSSLFQIIR 60

Query: 61 SS 63
          ++
Sbjct: 61 TA 62

[Close]

BLAST of Carg15443 vs. TrEMBL
Match: tr|A0A059D975|A0A059D975_EUCGR (Uncharacterized protein (Fragment) OS=Eucalyptus grandis OX=71139 GN=EUGRSUZ_B03504 PE=4 SV=1)

HSP 1 Score: 103.6 bits (257), Expect = 1.7e-19
Identity = 50/62 (80.65%), Postives = 55/62 (88.71%), Query Frame = 0


Query: 1   MTTSRRFADRKVERFEKNILKRGAVPETATKKGKDYPVGPLLLGFFVFVVIGSCEFFLAR 60
           MTTSRRFADRKV+RFEKNI KRGAVPET  KKGKDYPVGP+LLGFFVFVVIGS  F + R
Sbjct: 41  MTTSRRFADRKVDRFEKNITKRGAVPETTAKKGKDYPVGPILLGFFVFVVIGSSLFQIIR 100

Query: 61  SS 63
           ++
Sbjct: 101 TA 102

[Close]

BLAST of Carg15443 vs. TrEMBL
Match: tr|A0A059B8I0|A0A059B8I0_EUCGR (Uncharacterized protein OS=Eucalyptus grandis OX=71139 GN=EUGRSUZ_H04633 PE=4 SV=1)

HSP 1 Score: 103.6 bits (257), Expect = 1.7e-19
Identity = 50/62 (80.65%), Postives = 55/62 (88.71%), Query Frame = 0


Query: 1  MTTSRRFADRKVERFEKNILKRGAVPETATKKGKDYPVGPLLLGFFVFVVIGSCEFFLAR 60
          MTTSRRFADRKV+RFEKNI KRGAVPET  KKGKDYPVGPLLLGFF+FVVIGS  F + R
Sbjct: 1  MTTSRRFADRKVDRFEKNIKKRGAVPETTVKKGKDYPVGPLLLGFFIFVVIGSSLFQIIR 60

Query: 61 SS 63
          ++
Sbjct: 61 TA 62

[Close]

BLAST of Carg15443 vs. TrEMBL
Match: tr|A0A0L9TM23|A0A0L9TM23_PHAAN (Uncharacterized protein (Fragment) OS=Phaseolus angularis OX=3914 GN=LR48_Vigan01g106100 PE=4 SV=1)

HSP 1 Score: 103.6 bits (257), Expect = 1.7e-19
Identity = 49/61 (80.33%), Postives = 55/61 (90.16%), Query Frame = 0


Query: 2  TTSRRFADRKVERFEKNILKRGAVPETATKKGKDYPVGPLLLGFFVFVVIGSCEFFLARS 61
          TTSRRFADRKVE+FEKNI KRG VP+T +KKGKDYPVGPLLLGFFVFVVIGSC+  ++ S
Sbjct: 1  TTSRRFADRKVEKFEKNITKRGFVPDTTSKKGKDYPVGPLLLGFFVFVVIGSCKSIISAS 60

Query: 62 S 63
          S
Sbjct: 61 S 61

The following BLAST results are available for this feature:

BLAST of Carg15443 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022932563.1	1.6e-21	88.71	stress-associated endoplasmic reticulum protein 2-like isoform X2 [Cucurbita mos...	[more]
XP_022932562.1	6.0e-21	88.52	stress-associated endoplasmic reticulum protein 2-like isoform X1 [Cucurbita mos...	[more]
XP_004152134.1	1.3e-20	85.48	PREDICTED: stress-associated endoplasmic reticulum protein 2-like [Cucumis sativ...	[more]
XP_022956326.1	2.3e-20	85.48	stress-associated endoplasmic reticulum protein 2-like [Cucurbita moschata] >XP_...	[more]
XP_022158961.1	3.0e-20	83.87	stress-associated endoplasmic reticulum protein 2-like [Momordica charantia]	[more]

BLAST of Carg15443 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G27350.1	5.1e-22	75.81	Ribosome associated membrane protein RAMP4	[more]
AT1G27330.1	5.1e-22	75.81	Ribosome associated membrane protein RAMP4	[more]

BLAST of Carg15443 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q3T073\|SERP2_BOVIN	1.9e-05	49.02	Stress-associated endoplasmic reticulum protein 2 OS=Bos taurus OX=9913 GN=SERP2...	[more]
sp\|Q8N6R1\|SERP2_HUMAN	1.9e-05	49.02	Stress-associated endoplasmic reticulum protein 2 OS=Homo sapiens OX=9606 GN=SER...	[more]
sp\|Q6TAW2\|SERP2_MOUSE	1.9e-05	49.02	Stress-associated endoplasmic reticulum protein 2 OS=Mus musculus OX=10090 GN=Se...	[more]

BLAST of Carg15443 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0KYW0\|A0A0A0KYW0_CUCSA	8.9e-21	85.48	Stress associated endoplasmic reticulum protein OS=Cucumis sativus OX=3659 GN=Cs...	[more]
tr\|A0A2I4FYQ4\|A0A2I4FYQ4_9ROSI	4.4e-20	82.26	stress-associated endoplasmic reticulum protein 2-like OS=Juglans regia OX=51240...	[more]
tr\|A0A059D975\|A0A059D975_EUCGR	1.7e-19	80.65	Uncharacterized protein (Fragment) OS=Eucalyptus grandis OX=71139 GN=EUGRSUZ_B03...	[more]
tr\|A0A059B8I0\|A0A059B8I0_EUCGR	1.7e-19	80.65	Uncharacterized protein OS=Eucalyptus grandis OX=71139 GN=EUGRSUZ_H04633 PE=4 SV...	[more]
tr\|A0A0L9TM23\|A0A0L9TM23_PHAAN	1.7e-19	80.33	Uncharacterized protein (Fragment) OS=Phaseolus angularis OX=3914 GN=LR48_Vigan0...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Cellular Component**
Term	Definition
GO:0005783	endoplasmic reticulum

Vocabulary: **INTERPRO**
Term	Definition
IPR010580	ER_stress-assoc

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005783	endoplasmic reticulum
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg15443-RA	Carg15443-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR010580	Stress-associated endoplasmic reticulum protein	PFAM	PF06624	RAMP4	coord: 5..56 e-value: 3.0E-20 score: 71.9
IPR010580	Stress-associated endoplasmic reticulum protein	PANTHER	PTHR15601	STRESS ASSOCIATED ENDOPLASMIC RETICULUM PROTEIN SERP1/RAMP4	coord: 1..61
None	No IPR available	PANTHER	PTHR15601:SF5	SUBFAMILY NOT NAMED	coord: 1..61

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg15443	Csa4G011630	Cucumber (Chinese Long) v2	carcuB0716
Carg15443	ClCG07G015170	Watermelon (Charleston Gray)	carwcgB0670
Carg15443	CSPI04G02810	Wild cucumber (PI 183967)	carcpiB0730
Carg15443	Cucsa.095320	Cucumber (Gy14) v1	carcgyB0775
Carg15443	CmaCh14G014330	Cucurbita maxima (Rimu)	carcmaB0972
Carg15443	CmaCh06G016910	Cucurbita maxima (Rimu)	carcmaB0974
Carg15443	CmoCh14G014680	Cucurbita moschata (Rifu)	carcmoB0946
Carg15443	CmoCh06G016820	Cucurbita moschata (Rifu)	carcmoB0947
Carg15443	Lsi07G003430	Bottle gourd (USVL1VR-Ls)	carlsiB635
Carg15443	CsGy4G002670	Cucumber (Gy14) v2	carcgybB0693
Carg15443	MELO3C032849.2	Melon (DHL92) v3.6.1	carmedB0707
Carg15443	CsaV3_4G002750	Cucumber (Chinese Long) v3	carcucB0733
Carg15443	Cla97C07G142150	Watermelon (97103) v2	carwmbB0722
Carg15443	Bhi01G002862	Wax gourd	carwgoB0814

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Carg15443	Carg06584	Silver-seed gourd	carcarB142

The following block(s) are covering this gene:


Gene	Organism	Block
Carg15443	Silver-seed gourd	carcarB013
Carg15443	Cucumber (Gy14) v1	carcgyB0778
Carg15443	Cucurbita maxima (Rimu)	carcmaB0973
Carg15443	Cucurbita pepo (Zucchini)	carcpeB0973
Carg15443	Cucurbita pepo (Zucchini)	carcpeB0974
Carg15443	Wild cucumber (PI 183967)	carcpiB0731
Carg15443	Cucumber (Chinese Long) v3	carcucB0734
Carg15443	Bottle gourd (USVL1VR-Ls)	carlsiB631
Carg15443	Melon (DHL92) v3.5.1	carmeB0691
Carg15443	Melon (DHL92) v3.5.1	carmeB0694
Carg15443	Melon (DHL92) v3.6.1	carmedB0704
Carg15443	Watermelon (Charleston Gray)	carwcgB0669
Carg15443	Watermelon (97103) v1	carwmB0690
Carg15443	Watermelon (97103) v1	carwmB0693
Carg15443	Watermelon (97103) v2	carwmbB0721
Carg15443	Wax gourd	carwgoB0813