Carg15344 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg15344
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10-like
Location	Cucurbita_argyrosperma_scaffold_085 : 436411 .. 438515 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAATAATCCCAGAAGCAGCATCGTAAAGTTGCCCATAATCATCAGGCAGCTCACCGGAAAGCGTCCGGCAATTGGGCGGCGGCTTGGCTCTCCGTCGTCCAGCTCCGATGGGGACATTCCGGAGCGCCCCACCAGCAGTCCAGTACCTTTGACAACCCTTACAGAAATGTCTGGGCTGATTAACATTGTAATTGTTAAAGTAACAGAATTTGGTGTCCATGCTCTTACATCTTGGACAAGGAATAATCTTTTCAGGCCTCTTCATCTCTGTTTGATCACCTTCACCACCGCCGCCGCCTTTCTCCGGTTGATCCTTGACTTTTCTGGTCTGCAAAGGAATGATAGTGCCAAAAAGCTTAATTCCAGCCGTGGCGCTACCATGAAACTGAGCCATATGTAAAACAGAGAGAGGGAGAAAAAGAAGAGGGTTGTTCCTAATTTATTCTTTTTTGGGGAAGTGGTGTGCAGAGAGGACACATAGGGAAATGGGTATATATATATGTGTGTGGAAGTAAAAGTTCATAATACAAAGCAGTAAAACATGAGAATCGATGAGACAAAACAGACGGCAATTAGTCAAATTGATAGCTATTATGGTGGGAAAGAGTGAAAGACTGGGTATCACCCCCTTTTTCTTTCTCTCTTTTATATATATATATATATATACATACATCATTTGCTTCATATGTCATCATCAGATTCTCTATCAATAAAGAGAAAGAGAAAAAAGGAGAAAAAAGGAAAAAGATGTGGGAAATTTTTATTCAAATTTCTTTTTTTAAAAAAAAAAAGTATAAGAAAAGTAGGGTGCTTTTGGTAGAAACTTAAAGAGATTGAAAGGTTATTGTATATATGGAAATTTAAGATTATATTCACAAGTTTAGGAATAAATACTGCATCTGGTCTCCTTCTTCTCTTCTTGTTTAAGTTTCGCATGATTCTGTGTGGGTTTTTTCTTTCTTGTTCTTGTTCATCTTTAAAAGACTCAACTTTTTGAAAAAAAATTTTGGAGTGAAAAAGTTGCATTGATACTTAAAGGTAAGAGCTTTTGAAGCTTTTGATTTGTTTGTTGATGTGGGTCTTCCAAAAAGCCTCATTTTATGGTGGAGATGATCGACTTTTTTTGTGGGTATTAAAGTTTTGAAATTTGAGTTATGGACAAGTGTACACACTATCCTTCTTATTGCAAATTCAAATTATATGATAAACATAAGAAAGCTACCTTTATTTATTTATTTATTTGTTTGTTTATTCAACAACACTTTTTAATTCTATATATCTTCCTTTCTTTTGATGGAAAAAAGATGCACTTTCTTTTTCCTTTTCCTTTTACTTCTCCTTTTGGGAAGGAAAAAGGAAGCCACATTAGATGAAAAAAAAGGCTTCCTTTATCTCCAGTGCTTTCTCTTTTACTTGCATTAGATTAGATGTCTTTATGCGTATGTTATAAGTTTAATTCGGAACTTTTTAGCTTGTATCTATTTAGATCCATGATCTACTAATGTTGGGTGTGGATGCACAAATTACACGAGGCTAAGTTTAGGCGAGCCCACGGACATTTTGGTATGTGGTTCGGTCATCTGAGTCAATGCTACTCTTGCAGGCCTTCAAGCTTATGTTGTGGCAGTGTCGAGAGGCTATGGGTAGTGTCTCATATGATCTTCTTCTCTTGGTTTTAACGCTGTCCTTTATGCCATCGTGCTGCCAAGAAACGGGCTGGGCCATAAGCGTCGGCCCAAATATGTGAATGGGCTAAAGCATTTTGCAAAATTCTTCCATCATTGTCACGTTAGGCGACAGGCCAAGCTGGGACGGCTCGTCATCTCGGTCGCCCACCGCCGATCAGCAACAACAGCTGCAGCCGCCGTTCCTTTGAGCCGCCACGAGTCCCAAAAGCGGCGAGATTGGAACACTTTCGGGCCATATCTTAAAAACCGAACACGCCCAGTGTCGTTATCCTACTGTAGCCGTAACCATGTACTTGATTTTCTTCGATACCTGGACCAGTTCGGAAAAACAAGGGTTCACTCACATGGGTGTGTCTTTTTTGGACAACTCGACCCACCTGCCCTCTGCCCTCTGCCCTCTGCCCTTTCCCCTTGA

mRNA sequence

ATGAATAATCCCAGAAGCAGCATCGTAAAGTTGCCCATAATCATCAGGCAGCTCACCGGAAAGCGTCCGGCAATTGGGCGGCGGCTTGGCTCTCCGTCGTCCAGCTCCGATGGGGACATTCCGGAGCGCCCCACCAGCAGTCCAGTACCTTTGACAACCCTTACAGAAATGTCTGGGCTGATTAACATTGTAATTGTTAAAGTAACAGAATTTGGTGTCCATGCTCTTACATCTTGGACAAGGAATAATCTTTTCAGGCCTCTTCATCTCTGTTTGATCACCTTCACCACCGCCGCCGCCTTTCTCCGGTTGATCCTTGACTTTTCTGGTCTGCAAAGGAATGATAGTGCCAAAAAGCTTAATTCCAGCCGTGGCGCTACCATGAAACTGAGCCATATGCGACAGGCCAAGCTGGGACGGCTCGTCATCTCGGTCGCCCACCGCCGATCAGCAACAACAGCTGCAGCCGCCGTTCCTTTGAGCCGCCACGAGTCCCAAAAGCGGCGAGATTGGAACACTTTCGGGCCATATCTTAAAAACCGAACACGCCCAGTGTCGTTATCCTACTGTAGCCGTAACCATGTACTTGATTTTCTTCGATACCTGGACCAGTTCGGAAAAACAAGGGTTCACTCACATGGGTGTGTCTTTTTTGGACAACTCGACCCACCTGCCCTCTGCCCTCTGCCCTCTGCCCTTTCCCCTTGA

Coding sequence (CDS)

ATGAATAATCCCAGAAGCAGCATCGTAAAGTTGCCCATAATCATCAGGCAGCTCACCGGAAAGCGTCCGGCAATTGGGCGGCGGCTTGGCTCTCCGTCGTCCAGCTCCGATGGGGACATTCCGGAGCGCCCCACCAGCAGTCCAGTACCTTTGACAACCCTTACAGAAATGTCTGGGCTGATTAACATTGTAATTGTTAAAGTAACAGAATTTGGTGTCCATGCTCTTACATCTTGGACAAGGAATAATCTTTTCAGGCCTCTTCATCTCTGTTTGATCACCTTCACCACCGCCGCCGCCTTTCTCCGGTTGATCCTTGACTTTTCTGGTCTGCAAAGGAATGATAGTGCCAAAAAGCTTAATTCCAGCCGTGGCGCTACCATGAAACTGAGCCATATGCGACAGGCCAAGCTGGGACGGCTCGTCATCTCGGTCGCCCACCGCCGATCAGCAACAACAGCTGCAGCCGCCGTTCCTTTGAGCCGCCACGAGTCCCAAAAGCGGCGAGATTGGAACACTTTCGGGCCATATCTTAAAAACCGAACACGCCCAGTGTCGTTATCCTACTGTAGCCGTAACCATGTACTTGATTTTCTTCGATACCTGGACCAGTTCGGAAAAACAAGGGTTCACTCACATGGGTGTGTCTTTTTTGGACAACTCGACCCACCTGCCCTCTGCCCTCTGCCCTCTGCCCTTTCCCCTTGA

Protein sequence

MNNPRSSIVKLPIIIRQLTGKRPAIGRRLGSPSSSSDGDIPERPTSSPVPLTTLTEMSGLINIVIVKVTEFGVHALTSWTRNNLFRPLHLCLITFTTAAAFLRLILDFSGLQRNDSAKKLNSSRGATMKLSHMRQAKLGRLVISVAHRRSATTAAAAVPLSRHESQKRRDWNTFGPYLKNRTRPVSLSYCSRNHVLDFLRYLDQFGKTRVHSHGCVFFGQLDPPALCPLPSALSP

Homology

[Close]

BLAST of Carg15344 vs. NCBI nr
Match: KGN49305.1 (hypothetical protein Csa_6G519575 [Cucumis sativus])

HSP 1 Score: 158.7 bits (400), Expect = 2.4e-35
Identity = 85/114 (74.56%), Postives = 93/114 (81.58%), Query Frame = 0


Query: 1   MNNPRSSIVKLPIIIRQLTGKRPAIGRRLGSPSSSSDGDIPERPTSSPVPLTTLTEMSGL 60
           MNNPRS IV LPII+RQL GK PAI RRLGS ++SSDG + ERPT  PVPLTTL EMS L
Sbjct: 12  MNNPRSRIVILPIILRQLAGKGPAIRRRLGSSTTSSDGYVTERPTGRPVPLTTLAEMSRL 71

Query: 61  INIVIVKVTEFGVHALTSWTRNNLFRPLHLCLITFTTA---AAFLRLILDFSGL 112
           INIVIV+VTEFGVH LTSWT NNLFRPLHLC ITFTTA   ++FL  +L FSGL
Sbjct: 72  INIVIVEVTEFGVHTLTSWTWNNLFRPLHLCFITFTTAGDRSSFLWFLLQFSGL 125

[Close]

BLAST of Carg15344 vs. NCBI nr
Match: XP_010109876.1 (protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10 [Morus notabilis] >EXC24829.1 hypothetical protein L484_003806 [Morus notabilis])

HSP 1 Score: 134.0 bits (336), Expect = 6.4e-28
Identity = 70/122 (57.38%), Postives = 81/122 (66.39%), Query Frame = 0


Query: 109 SGLQRNDSAKKLNSSRGATMKLSHMRQAKLGRLVISVAHRRSATTAAAAVPLSRHESQKR 168
           SG +R DSA + +SSR  TM               + A         +A PLSR+ESQK+
Sbjct: 2   SGDRRKDSAAEGSSSRSITM-------------TTAPADLHXXXXXPSAAPLSRYESQKK 61

Query: 169 RDWNTFGPYLKNRTRPVSLSYCSRNHVLDFLRYLDQFGKTRVHSHGCVFFGQLDPPALCP 228
           RDWNTFG YLKN+T PV+LS C+ NHVLDFLRYLDQFGKT+VH HGCVFFGQ DPPA C 
Sbjct: 62  RDWNTFGQYLKNQTPPVALSQCNCNHVLDFLRYLDQFGKTKVHLHGCVFFGQPDPPAPCT 110

Query: 229 LP 231
            P
Sbjct: 122 CP 110

[Close]

BLAST of Carg15344 vs. NCBI nr
Match: XP_015943081.1 (protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10 [Arachis duranensis] >XP_015943082.1 protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10 [Arachis duranensis])

HSP 1 Score: 132.1 bits (331), Expect = 2.4e-27
Identity = 59/80 (73.75%), Postives = 69/80 (86.25%), Query Frame = 0


Query: 151 ATTAAAAVPLSRHESQKRRDWNTFGPYLKNRTRPVSLSYCSRNHVLDFLRYLDQFGKTRV 210
           A++AA A PLSR+ESQK+RDWNTFG YLKN+T PVSLS C+ NHVL+FLRYLDQFGKT+V
Sbjct: 29  ASSAAVAAPLSRYESQKKRDWNTFGQYLKNQTPPVSLSQCNFNHVLEFLRYLDQFGKTKV 88

Query: 211 HSHGCVFFGQLDPPALCPLP 231
           H +GC+FFGQ DPPA C  P
Sbjct: 89  HMNGCIFFGQPDPPAPCTCP 108

[Close]

BLAST of Carg15344 vs. NCBI nr
Match: NP_001237249.1 (uncharacterized protein LOC100306082 [Glycine max] >ACU14083.1 unknown [Glycine max] >KRH11015.1 hypothetical protein GLYMA_15G082800 [Glycine max])

HSP 1 Score: 131.3 bits (329), Expect = 4.2e-27
Identity = 63/93 (67.74%), Postives = 72/93 (77.42%), Query Frame = 0


Query: 144 SVAHRRSATTA------AAAVPLSRHESQKRRDWNTFGPYLKNRTRPVSLSYCSRNHVLD 203
           S +  R+A T+       AA PLSR+ESQKRRDWNTFG YLKN+T PVSLS C+ NHVL+
Sbjct: 9   SASSSRAAATSDQRHQQPAAAPLSRYESQKRRDWNTFGQYLKNQTPPVSLSQCNFNHVLE 68

Query: 204 FLRYLDQFGKTRVHSHGCVFFGQLDPPALCPLP 231
           FLRYLDQFGKT+VH HGC+FFGQ DPPA C  P
Sbjct: 69  FLRYLDQFGKTKVHLHGCIFFGQPDPPAPCTCP 101

[Close]

BLAST of Carg15344 vs. NCBI nr
Match: XP_007212120.1 (protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10 [Prunus persica] >ONI10678.1 hypothetical protein PRUPE_4G061700 [Prunus persica])

HSP 1 Score: 131.3 bits (329), Expect = 4.2e-27
Identity = 60/75 (80.00%), Postives = 64/75 (85.33%), Query Frame = 0


Query: 156 AAVPLSRHESQKRRDWNTFGPYLKNRTRPVSLSYCSRNHVLDFLRYLDQFGKTRVHSHGC 215
           A  PLSR+ESQKRRDWNTFG YLKN+T PVSLS C+ NHVLDFLRYLDQFGKT+VH HGC
Sbjct: 31  APQPLSRYESQKRRDWNTFGQYLKNQTPPVSLSQCNCNHVLDFLRYLDQFGKTKVHLHGC 90

Query: 216 VFFGQLDPPALCPLP 231
           VFFGQ DPPA C  P
Sbjct: 91  VFFGQPDPPAPCTCP 105

[Close]

BLAST of Carg15344 vs. TAIR10
Match: AT2G42610.1 (Protein of unknown function (DUF640))

HSP 1 Score: 116.3 bits (290), Expect = 2.5e-26
Identity = 51/70 (72.86%), Postives = 59/70 (84.29%), Query Frame = 0


Query: 161 SRHESQKRRDWNTFGPYLKNRTRPVSLSYCSRNHVLDFLRYLDQFGKTRVHSHGCVFFGQ 220
           SR+ESQKRRDWNTFG YLKN+  PV +S+CS NHVLDFLRYLDQFGKT+VH  GC+F+GQ
Sbjct: 24  SRYESQKRRDWNTFGQYLKNQRPPVPMSHCSCNHVLDFLRYLDQFGKTKVHVPGCMFYGQ 83

Query: 221 LDPPALCPLP 231
            +PPA C  P
Sbjct: 84  PEPPAPCTCP 93

[Close]

BLAST of Carg15344 vs. TAIR10
Match: AT1G78815.1 (Protein of unknown function (DUF640))

HSP 1 Score: 112.5 bits (280), Expect = 3.6e-25
Identity = 48/71 (67.61%), Postives = 57/71 (80.28%), Query Frame = 0


Query: 160 LSRHESQKRRDWNTFGPYLKNRTRPVSLSYCSRNHVLDFLRYLDQFGKTRVHSHGCVFFG 219
           LSR+ESQKRRDWNTF  YL+N+  PV +S C  NH+LDFL+YLDQFGKT+VH HGCVFFG
Sbjct: 38  LSRYESQKRRDWNTFCQYLRNQQPPVHISQCGSNHILDFLQYLDQFGKTKVHIHGCVFFG 97

Query: 220 QLDPPALCPLP 231
           Q++P   C  P
Sbjct: 98  QVEPAGQCNCP 108

[Close]

BLAST of Carg15344 vs. TAIR10
Match: AT3G23290.2 (Protein of unknown function (DUF640))

HSP 1 Score: 109.8 bits (273), Expect = 2.4e-24
Identity = 49/71 (69.01%), Postives = 57/71 (80.28%), Query Frame = 0


Query: 160 LSRHESQKRRDWNTFGPYLKNRTRPVSLSYCSRNHVLDFLRYLDQFGKTRVHSHGCVFFG 219
           LSR+E+QKRRDWNTFG YL+N   P+SLS CS  HVL+FLRYLDQFGKT+VH+H C FFG
Sbjct: 46  LSRYENQKRRDWNTFGQYLRNHRPPLSLSRCSGAHVLEFLRYLDQFGKTKVHTHLCPFFG 105

Query: 220 QLDPPALCPLP 231
             +PPA C  P
Sbjct: 106 HPNPPAPCACP 116

[Close]

BLAST of Carg15344 vs. TAIR10
Match: AT4G18610.1 (Protein of unknown function (DUF640))

HSP 1 Score: 103.6 bits (257), Expect = 1.7e-22
Identity = 48/84 (57.14%), Postives = 55/84 (65.48%), Query Frame = 0


Query: 147 HRRSATTAAAAVPLSRHESQKRRDWNTFGPYLKNRTRPVSLSYCSRNHVLDFLRYLDQFG 206
           H +         PLSR+ESQKRRDWNTF  YLK++  P+ +S     HVL FLRYLDQFG
Sbjct: 22  HHKQPLPPQPQQPLSRYESQKRRDWNTFVQYLKSQNPPLMMSQFDYTHVLSFLRYLDQFG 81

Query: 207 KTRVHSHGCVFFGQLDPPALCPLP 231
           KT+VH   CVFFGQ DPP  C  P
Sbjct: 82  KTKVHHQACVFFGQPDPPGPCTCP 105

[Close]

BLAST of Carg15344 vs. TAIR10
Match: AT5G58500.1 (Protein of unknown function (DUF640))

HSP 1 Score: 102.1 bits (253), Expect = 4.9e-22
Identity = 45/70 (64.29%), Postives = 55/70 (78.57%), Query Frame = 0


Query: 161 SRHESQKRRDWNTFGPYLKNRTRPVSLSYCSRNHVLDFLRYLDQFGKTRVHSHGCVFFGQ 220
           SR+ESQKRRDWNTF  YL+N   P++LS CS  HVL+FL+YLDQFGKT+VH+  C FFGQ
Sbjct: 18  SRYESQKRRDWNTFLQYLRNHKPPLNLSRCSGAHVLEFLKYLDQFGKTKVHATACPFFGQ 77

Query: 221 LDPPALCPLP 231
            +PP+ C  P
Sbjct: 78  PNPPSQCTCP 87

[Close]

BLAST of Carg15344 vs. Swiss-Prot
Match: sp|Q9S7R3|LSH10_ARATH (Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10 OS=Arabidopsis thaliana OX=3702 GN=LSH10 PE=1 SV=1)

HSP 1 Score: 116.3 bits (290), Expect = 4.6e-25
Identity = 51/70 (72.86%), Postives = 59/70 (84.29%), Query Frame = 0


Query: 161 SRHESQKRRDWNTFGPYLKNRTRPVSLSYCSRNHVLDFLRYLDQFGKTRVHSHGCVFFGQ 220
           SR+ESQKRRDWNTFG YLKN+  PV +S+CS NHVLDFLRYLDQFGKT+VH  GC+F+GQ
Sbjct: 24  SRYESQKRRDWNTFGQYLKNQRPPVPMSHCSCNHVLDFLRYLDQFGKTKVHVPGCMFYGQ 83

Query: 221 LDPPALCPLP 231
            +PPA C  P
Sbjct: 84  PEPPAPCTCP 93

[Close]

BLAST of Carg15344 vs. Swiss-Prot
Match: sp|Q9ZVA0|LSH7_ARATH (Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 7 OS=Arabidopsis thaliana OX=3702 GN=LSH7 PE=1 SV=1)

HSP 1 Score: 112.5 bits (280), Expect = 6.6e-24
Identity = 48/71 (67.61%), Postives = 57/71 (80.28%), Query Frame = 0


Query: 160 LSRHESQKRRDWNTFGPYLKNRTRPVSLSYCSRNHVLDFLRYLDQFGKTRVHSHGCVFFG 219
           LSR+ESQKRRDWNTF  YL+N+  PV +S C  NH+LDFL+YLDQFGKT+VH HGCVFFG
Sbjct: 38  LSRYESQKRRDWNTFCQYLRNQQPPVHISQCGSNHILDFLQYLDQFGKTKVHIHGCVFFG 97

Query: 220 QLDPPALCPLP 231
           Q++P   C  P
Sbjct: 98  QVEPAGQCNCP 108

[Close]

BLAST of Carg15344 vs. Swiss-Prot
Match: sp|Q9LW68|LSH4_ARATH (Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 4 OS=Arabidopsis thaliana OX=3702 GN=LSH4 PE=1 SV=1)

HSP 1 Score: 109.8 bits (273), Expect = 4.3e-23
Identity = 49/71 (69.01%), Postives = 57/71 (80.28%), Query Frame = 0


Query: 160 LSRHESQKRRDWNTFGPYLKNRTRPVSLSYCSRNHVLDFLRYLDQFGKTRVHSHGCVFFG 219
           LSR+E+QKRRDWNTFG YL+N   P+SLS CS  HVL+FLRYLDQFGKT+VH+H C FFG
Sbjct: 46  LSRYENQKRRDWNTFGQYLRNHRPPLSLSRCSGAHVLEFLRYLDQFGKTKVHTHLCPFFG 105

Query: 220 QLDPPALCPLP 231
             +PPA C  P
Sbjct: 106 HPNPPAPCACP 116

[Close]

BLAST of Carg15344 vs. Swiss-Prot
Match: sp|A2XED8|G1L7_ORYSI (Protein G1-like7 OS=Oryza sativa subsp. indica OX=39946 GN=OsI_10694 PE=3 SV=1)

HSP 1 Score: 107.1 bits (266), Expect = 2.8e-22
Identity = 46/71 (64.79%), Postives = 56/71 (78.87%), Query Frame = 0


Query: 160 LSRHESQKRRDWNTFGPYLKNRTRPVSLSYCSRNHVLDFLRYLDQFGKTRVHSHGCVFFG 219
           LSR+ESQKRRDWNTF  YL+N   P++L+ CS  HV++FLRYLDQFGKT+VH+ GC F+G
Sbjct: 29  LSRYESQKRRDWNTFLQYLRNHRPPLTLARCSGAHVIEFLRYLDQFGKTKVHASGCAFYG 88

Query: 220 QLDPPALCPLP 231
           Q  PP  CP P
Sbjct: 89  QPSPPGPCPCP 99

[Close]

BLAST of Carg15344 vs. Swiss-Prot
Match: sp|Q941W1|G1L7_ORYSJ (Protein G1-like7 OS=Oryza sativa subsp. japonica OX=39947 GN=G1L7 PE=1 SV=1)

HSP 1 Score: 107.1 bits (266), Expect = 2.8e-22
Identity = 46/71 (64.79%), Postives = 56/71 (78.87%), Query Frame = 0


Query: 160 LSRHESQKRRDWNTFGPYLKNRTRPVSLSYCSRNHVLDFLRYLDQFGKTRVHSHGCVFFG 219
           LSR+ESQKRRDWNTF  YL+N   P++L+ CS  HV++FLRYLDQFGKT+VH+ GC F+G
Sbjct: 29  LSRYESQKRRDWNTFLQYLRNHRPPLTLARCSGAHVIEFLRYLDQFGKTKVHASGCAFYG 88

Query: 220 QLDPPALCPLP 231
           Q  PP  CP P
Sbjct: 89  QPSPPGPCPCP 99

[Close]

BLAST of Carg15344 vs. TrEMBL
Match: tr|A0A0A0KHV6|A0A0A0KHV6_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G519575 PE=4 SV=1)

HSP 1 Score: 158.7 bits (400), Expect = 1.6e-35
Identity = 85/114 (74.56%), Postives = 93/114 (81.58%), Query Frame = 0


Query: 1   MNNPRSSIVKLPIIIRQLTGKRPAIGRRLGSPSSSSDGDIPERPTSSPVPLTTLTEMSGL 60
           MNNPRS IV LPII+RQL GK PAI RRLGS ++SSDG + ERPT  PVPLTTL EMS L
Sbjct: 12  MNNPRSRIVILPIILRQLAGKGPAIRRRLGSSTTSSDGYVTERPTGRPVPLTTLAEMSRL 71

Query: 61  INIVIVKVTEFGVHALTSWTRNNLFRPLHLCLITFTTA---AAFLRLILDFSGL 112
           INIVIV+VTEFGVH LTSWT NNLFRPLHLC ITFTTA   ++FL  +L FSGL
Sbjct: 72  INIVIVEVTEFGVHTLTSWTWNNLFRPLHLCFITFTTAGDRSSFLWFLLQFSGL 125

[Close]

BLAST of Carg15344 vs. TrEMBL
Match: tr|W9SSK6|W9SSK6_9ROSA (Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_003806 PE=4 SV=1)

HSP 1 Score: 134.0 bits (336), Expect = 4.3e-28
Identity = 70/122 (57.38%), Postives = 81/122 (66.39%), Query Frame = 0


Query: 109 SGLQRNDSAKKLNSSRGATMKLSHMRQAKLGRLVISVAHRRSATTAAAAVPLSRHESQKR 168
           SG +R DSA + +SSR  TM               + A         +A PLSR+ESQK+
Sbjct: 2   SGDRRKDSAAEGSSSRSITM-------------TTAPADLHXXXXXPSAAPLSRYESQKK 61

Query: 169 RDWNTFGPYLKNRTRPVSLSYCSRNHVLDFLRYLDQFGKTRVHSHGCVFFGQLDPPALCP 228
           RDWNTFG YLKN+T PV+LS C+ NHVLDFLRYLDQFGKT+VH HGCVFFGQ DPPA C 
Sbjct: 62  RDWNTFGQYLKNQTPPVALSQCNCNHVLDFLRYLDQFGKTKVHLHGCVFFGQPDPPAPCT 110

Query: 229 LP 231
            P
Sbjct: 122 CP 110

[Close]

BLAST of Carg15344 vs. TrEMBL
Match: tr|C6SXW0|C6SXW0_SOYBN (Uncharacterized protein OS=Glycine max OX=3847 GN=100306082 PE=2 SV=1)

HSP 1 Score: 131.3 bits (329), Expect = 2.8e-27
Identity = 63/93 (67.74%), Postives = 72/93 (77.42%), Query Frame = 0


Query: 144 SVAHRRSATTA------AAAVPLSRHESQKRRDWNTFGPYLKNRTRPVSLSYCSRNHVLD 203
           S +  R+A T+       AA PLSR+ESQKRRDWNTFG YLKN+T PVSLS C+ NHVL+
Sbjct: 9   SASSSRAAATSDQRHQQPAAAPLSRYESQKRRDWNTFGQYLKNQTPPVSLSQCNFNHVLE 68

Query: 204 FLRYLDQFGKTRVHSHGCVFFGQLDPPALCPLP 231
           FLRYLDQFGKT+VH HGC+FFGQ DPPA C  P
Sbjct: 69  FLRYLDQFGKTKVHLHGCIFFGQPDPPAPCTCP 101

[Close]

BLAST of Carg15344 vs. TrEMBL
Match: tr|M5WHX2|M5WHX2_PRUPE (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_4G061700 PE=4 SV=1)

HSP 1 Score: 131.3 bits (329), Expect = 2.8e-27
Identity = 60/75 (80.00%), Postives = 64/75 (85.33%), Query Frame = 0


Query: 156 AAVPLSRHESQKRRDWNTFGPYLKNRTRPVSLSYCSRNHVLDFLRYLDQFGKTRVHSHGC 215
           A  PLSR+ESQKRRDWNTFG YLKN+T PVSLS C+ NHVLDFLRYLDQFGKT+VH HGC
Sbjct: 31  APQPLSRYESQKRRDWNTFGQYLKNQTPPVSLSQCNCNHVLDFLRYLDQFGKTKVHLHGC 90

Query: 216 VFFGQLDPPALCPLP 231
           VFFGQ DPPA C  P
Sbjct: 91  VFFGQPDPPAPCTCP 105

[Close]

BLAST of Carg15344 vs. TrEMBL
Match: tr|I1M1T9|I1M1T9_SOYBN (Uncharacterized protein OS=Glycine max OX=3847 GN=100778886 PE=4 SV=1)

HSP 1 Score: 130.6 bits (327), Expect = 4.7e-27
Identity = 58/74 (78.38%), Postives = 64/74 (86.49%), Query Frame = 0


Query: 157 AVPLSRHESQKRRDWNTFGPYLKNRTRPVSLSYCSRNHVLDFLRYLDQFGKTRVHSHGCV 216
           A PLSR+ESQKRRDWNTFG YLKN+T PVSLS C+ NHVL+FLRYLDQFGKT+VH HGC+
Sbjct: 28  AAPLSRYESQKRRDWNTFGQYLKNQTPPVSLSQCNFNHVLEFLRYLDQFGKTKVHLHGCI 87

Query: 217 FFGQLDPPALCPLP 231
           FFGQ DPPA C  P
Sbjct: 88  FFGQPDPPAPCTCP 101

The following BLAST results are available for this feature:

BLAST of Carg15344 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN49305.1	2.4e-35	74.56	hypothetical protein Csa_6G519575 [Cucumis sativus]	[more]
XP_010109876.1	6.4e-28	57.38	protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10 [Morus notabilis] >EXC24829.1 hypoth...	[more]
XP_015943081.1	2.4e-27	73.75	protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10 [Arachis duranensis] >XP_015943082.1...	[more]
NP_001237249.1	4.2e-27	67.74	uncharacterized protein LOC100306082 [Glycine max] >ACU14083.1 unknown [Glycine ...	[more]
XP_007212120.1	4.2e-27	80.00	protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10 [Prunus persica] >ONI10678.1 hypothe...	[more]

BLAST of Carg15344 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G42610.1	2.5e-26	72.86	Protein of unknown function (DUF640)	[more]
AT1G78815.1	3.6e-25	67.61	Protein of unknown function (DUF640)	[more]
AT3G23290.2	2.4e-24	69.01	Protein of unknown function (DUF640)	[more]
AT4G18610.1	1.7e-22	57.14	Protein of unknown function (DUF640)	[more]
AT5G58500.1	4.9e-22	64.29	Protein of unknown function (DUF640)	[more]

BLAST of Carg15344 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q9S7R3\|LSH10_ARATH	4.6e-25	72.86	Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10 OS=Arabidopsis thaliana OX=3702 GN=L...	[more]
sp\|Q9ZVA0\|LSH7_ARATH	6.6e-24	67.61	Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 7 OS=Arabidopsis thaliana OX=3702 GN=LS...	[more]
sp\|Q9LW68\|LSH4_ARATH	4.3e-23	69.01	Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 4 OS=Arabidopsis thaliana OX=3702 GN=LS...	[more]
sp\|A2XED8\|G1L7_ORYSI	2.8e-22	64.79	Protein G1-like7 OS=Oryza sativa subsp. indica OX=39946 GN=OsI_10694 PE=3 SV=1	[more]
sp\|Q941W1\|G1L7_ORYSJ	2.8e-22	64.79	Protein G1-like7 OS=Oryza sativa subsp. japonica OX=39947 GN=G1L7 PE=1 SV=1	[more]

BLAST of Carg15344 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0KHV6\|A0A0A0KHV6_CUCSA	1.6e-35	74.56	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G519575 PE=4 SV=1	[more]
tr\|W9SSK6\|W9SSK6_9ROSA	4.3e-28	57.38	Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_003806 PE=4 SV=1	[more]
tr\|C6SXW0\|C6SXW0_SOYBN	2.8e-27	67.74	Uncharacterized protein OS=Glycine max OX=3847 GN=100306082 PE=2 SV=1	[more]
tr\|M5WHX2\|M5WHX2_PRUPE	2.8e-27	80.00	Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_4G061700 PE=4 SV=1	[more]
tr\|I1M1T9\|I1M1T9_SOYBN	4.7e-27	78.38	Uncharacterized protein OS=Glycine max OX=3847 GN=100778886 PE=4 SV=1	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR006936	ALOG_dom

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg15344-RA	Carg15344-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR006936	ALOG domain	PFAM	PF04852	DUF640	coord: 158..231 e-value: 1.3E-29 score: 102.9
IPR006936	ALOG domain	PROSITE	PS51697	ALOG	coord: 162..235 score: 32.265
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 24..51
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 29..51
None	No IPR available	PANTHER	PTHR31165	FAMILY NOT NAMED	coord: 150..230
None	No IPR available	PANTHER	PTHR31165:SF8	PROTEIN LIGHT-DEPENDENT SHORT HYPOCOTYLS 9	coord: 150..230

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg15344	CSPI06G35370	Wild cucumber (PI 183967)	carcpiB0584
Carg15344	Cla97C01G023680	Watermelon (97103) v2	carwmbB0571
Carg15344	Cla97C03G059000	Watermelon (97103) v2	carwmbB0573
Carg15344	Bhi03G000227	Wax gourd	carwgoB0657
Carg15344	Bhi08G001811	Wax gourd	carwgoB0659

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Carg15344	Carg14584	Silver-seed gourd	carcarB174
Carg15344	Carg18209	Silver-seed gourd	carcarB499
Carg15344	Carg19877	Silver-seed gourd	carcarB508

The following block(s) are covering this gene:


Gene	Organism	Block
Carg15344	Cucumber (Gy14) v2	carcgybB0552
Carg15344	Cucumber (Gy14) v2	carcgybB0554
Carg15344	Cucumber (Gy14) v1	carcgyB0623
Carg15344	Cucumber (Gy14) v1	carcgyB0626
Carg15344	Cucurbita maxima (Rimu)	carcmaB0761
Carg15344	Cucurbita maxima (Rimu)	carcmaB0762
Carg15344	Cucurbita maxima (Rimu)	carcmaB0763
Carg15344	Cucurbita maxima (Rimu)	carcmaB0766
Carg15344	Cucurbita moschata (Rifu)	carcmoB0739
Carg15344	Cucurbita moschata (Rifu)	carcmoB0741
Carg15344	Cucurbita moschata (Rifu)	carcmoB0742
Carg15344	Cucurbita moschata (Rifu)	carcmoB0745
Carg15344	Cucurbita pepo (Zucchini)	carcpeB0771
Carg15344	Cucurbita pepo (Zucchini)	carcpeB0772
Carg15344	Cucurbita pepo (Zucchini)	carcpeB0773
Carg15344	Cucurbita pepo (Zucchini)	carcpeB0775
Carg15344	Wild cucumber (PI 183967)	carcpiB0582
Carg15344	Cucumber (Chinese Long) v2	carcuB0576
Carg15344	Cucumber (Chinese Long) v2	carcuB0578
Carg15344	Cucumber (Chinese Long) v3	carcucB0583
Carg15344	Cucumber (Chinese Long) v3	carcucB0585
Carg15344	Bottle gourd (USVL1VR-Ls)	carlsiB496
Carg15344	Bottle gourd (USVL1VR-Ls)	carlsiB497
Carg15344	Melon (DHL92) v3.5.1	carmeB0551
Carg15344	Melon (DHL92) v3.5.1	carmeB0554
Carg15344	Melon (DHL92) v3.6.1	carmedB0557
Carg15344	Melon (DHL92) v3.6.1	carmedB0560
Carg15344	Watermelon (Charleston Gray)	carwcgB0531
Carg15344	Watermelon (Charleston Gray)	carwcgB0532
Carg15344	Watermelon (97103) v1	carwmB0544
Carg15344	Watermelon (97103) v1	carwmB0545