Carg15139 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg15139
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	3-hexulose-6-phosphate isomerase
Location	Cucurbita_argyrosperma_scaffold_078 : 732706 .. 733736 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCAGTAAATGGATCAGATCAGGCAATAAGAGGAATTAACCCATTACAAATTCGGATCGATAAAACAGATAGGAAGTCGGATTCATACTCTTGGAATGAAAGGATTACTGAAAGAACTGCCGCTAGTGTACGGCCTTCCCCTTCCAGTGCAGCAAATACGAGCTCTCACCGCCTGAAAATAACCGGAGCTCTGTTTTTCCGTCCAAGAATTATAGAACTACCCTTCTAGAGGACGCTCTGTCTCTCGATTTCTCCCGATGCCGCAATTGCAAAGCAACGTTCTCTTCTCCCAATACCGATATTGCCCCCGCCAATTTGGCCATAGGGTATGTCGTTTGATTCCTTATTTCTAAATAAATAAATATAATTCGAAACTTAATCATATAATATGTTTCATTAACCTAAAATTAATTACAATTTTAACCGATCAACAATATGTCACATTTTTTATAACATAAAGTAAAGAATATGATTATTTTAGTATTACTTATATAATATACCTTATGCTTCATATTAAATATATTATTAATACTAATCACACGTGGCATGATACCACAGGATAATTCAAAACGACTGCACCAGAAGCACATCACATAGAGCCAAAACCCCTTAATTTCGTTAGTTTAAAGACGATGCGTTGAAACCGAGAGAGTCACCATCAAGCGACCTCACGCGCCGCCCGGATGGACGGTTGTTCCTCTACGGTGTCGGCCGTGAAGGCCTAATGCTCAAAGCCCTTTGTATACGGCTAGCTCATCTCGGCCTCTCGTCGCACCAGGTTTGCGACATGAACGCGCCGCCAATTTCAGCTCCTGACCTCCTGTATACGGATTTTCGACCGTCGATGCGATTTTCTCCGAGGCCAGATCCAACGGCGATAGCGTTTTGCTTCTGACTGTCTAGACGGAGAGCGGCTCGTGTGTTAATCACGCCGATGTGATTTTCTACGTTCCGGCGCAGAGCATGGCGGACGATGAGGAATCGACGACGGCGGCGGTGAAATGGCGGCCTCTGCTTCCGATGGGGTGA

mRNA sequence

ATGGCAGTAAATGGATCAGATCAGGCAATAAGAGGAATTAACCCATTACAAATTCGGATCGATAAAACAGATAGGAACAAATACGAGCTCTCACCGCCTGAAAATAACCGGAGCTCTGTTTTTCCGTCCAAGAATTATAGAACTACCCTTCTAGAGGACGCTCTGTCTCTCGATTTCTCCCGATGCCGCAATTGCAAAGCAACGTTCTCTTCTCCCAATACCGATATTGCCCCCGCCAATTTGGCCATAGGAGAGTCACCATCAAGCGACCTCACGCGCCGCCCGGATGGACGGTTGTTCCTCTACGGTGTCGGCCGTGAAGGCCTAATGCTCAAAGCCCTTTGTATACGGCTAGCTCATCTCGGCCTCTCGTCGCACCAGACGGAGAGCGGCTCGTGTGTTAATCACGCCGATGTGATTTTCTACGTTCCGGCGCAGAGCATGGCGGACGATGAGGAATCGACGACGGCGGCGGTGAAATGGCGGCCTCTGCTTCCGATGGGGTGA

Coding sequence (CDS)

ATGGCAGTAAATGGATCAGATCAGGCAATAAGAGGAATTAACCCATTACAAATTCGGATCGATAAAACAGATAGGAACAAATACGAGCTCTCACCGCCTGAAAATAACCGGAGCTCTGTTTTTCCGTCCAAGAATTATAGAACTACCCTTCTAGAGGACGCTCTGTCTCTCGATTTCTCCCGATGCCGCAATTGCAAAGCAACGTTCTCTTCTCCCAATACCGATATTGCCCCCGCCAATTTGGCCATAGGAGAGTCACCATCAAGCGACCTCACGCGCCGCCCGGATGGACGGTTGTTCCTCTACGGTGTCGGCCGTGAAGGCCTAATGCTCAAAGCCCTTTGTATACGGCTAGCTCATCTCGGCCTCTCGTCGCACCAGACGGAGAGCGGCTCGTGTGTTAATCACGCCGATGTGATTTTCTACGTTCCGGCGCAGAGCATGGCGGACGATGAGGAATCGACGACGGCGGCGGTGAAATGGCGGCCTCTGCTTCCGATGGGGTGA

Protein sequence

MAVNGSDQAIRGINPLQIRIDKTDRNKYELSPPENNRSSVFPSKNYRTTLLEDALSLDFSRCRNCKATFSSPNTDIAPANLAIGESPSSDLTRRPDGRLFLYGVGREGLMLKALCIRLAHLGLSSHQTESGSCVNHADVIFYVPAQSMADDEESTTAAVKWRPLLPMG

Homology

[Close]

BLAST of Carg15139 vs. NCBI nr
Match: XP_004140780.1 (PREDICTED: uncharacterized protein LOC101217276 [Cucumis sativus] >KGN57361.1 3-hexulose-6-phosphate isomerase [Cucumis sativus])

HSP 1 Score: 101.3 bits (251), Expect = 3.3e-18
Identity = 69/154 (44.81%), Postives = 77/154 (50.00%), Query Frame = 0


Query: 62  CRNCKATFSSPNTDIAPANLAIGESPSSDLTRRPDGRLFLYGVGREGLMLKALCIRLAHL 121
           C    + FS P    AP  L I  S  S +  R   R+FLYGVGREGLMLKALC+RLAHL
Sbjct: 14  CSEIASIFSKPTQPYAPP-LEILVSELSSVAER-KARVFLYGVGREGLMLKALCMRLAHL 73

Query: 122 GLSSHQT-----------------------------------------------ESGSCV 169
           GLSSHQ                                                E+GS V
Sbjct: 74  GLSSHQVFDMNAPPIAGSDLLIASAGPGGFSTVDAICSVARSKGGRVLVLTAQPENGSSV 133

[Close]

BLAST of Carg15139 vs. NCBI nr
Match: XP_022945534.1 (uncharacterized protein LOC111449742 [Cucurbita moschata] >XP_023542323.1 uncharacterized protein LOC111802255 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 100.5 bits (249), Expect = 5.6e-18
Identity = 67/155 (43.23%), Postives = 76/155 (49.03%), Query Frame = 0


Query: 62  CRNCKATFSSPNTDIAPANLAIGESPSSDLTRRPDGRLFLYGVGREGLMLKALCIRLAHL 121
           C    + FS P    +P    +    S+   R+   R+FLYGVGREGLMLKALC+RLAHL
Sbjct: 14  CSEIASVFSKPTRQHSPPLELLVSELSAAAARK--ARVFLYGVGREGLMLKALCMRLAHL 73

Query: 122 GLSSHQT-----------------------------------------------ESGSCV 169
           GLSSHQ                                                E+GS V
Sbjct: 74  GLSSHQVFDMNAPPIAAHDLLIASAGPGGFSTVDAICSVARSNGGRVLLLTAQPETGSSV 133

[Close]

BLAST of Carg15139 vs. NCBI nr
Match: XP_022968332.1 (uncharacterized protein LOC111467597 [Cucurbita maxima])

HSP 1 Score: 98.2 bits (243), Expect = 2.8e-17
Identity = 66/155 (42.58%), Postives = 75/155 (48.39%), Query Frame = 0


Query: 62  CRNCKATFSSPNTDIAPANLAIGESPSSDLTRRPDGRLFLYGVGREGLMLKALCIRLAHL 121
           C    + F  P    +P    +    S+   R+   R+FLYGVGREGLMLKALC+RLAHL
Sbjct: 14  CSEIASVFFKPTRQHSPPLELLVSELSAAAARK--ARVFLYGVGREGLMLKALCMRLAHL 73

Query: 122 GLSSHQT-----------------------------------------------ESGSCV 169
           GLSSHQ                                                E+GS V
Sbjct: 74  GLSSHQVFDMNAPPIAARDLLIASAGPGGFSTVDAICSVARSNGGRVLLLTAQPETGSSV 133

[Close]

BLAST of Carg15139 vs. NCBI nr
Match: XP_008439193.1 (PREDICTED: 3-hexulose-6-phosphate isomerase [Cucumis melo])

HSP 1 Score: 97.4 bits (241), Expect = 4.8e-17
Identity = 66/154 (42.86%), Postives = 76/154 (49.35%), Query Frame = 0


Query: 62  CRNCKATFSSPNTDIAPANLAIGESPSSDLTRRPDGRLFLYGVGREGLMLKALCIRLAHL 121
           C    + FS P    AP+   +    SS   R+   R+FLYGVGREGLMLKALC+RLAHL
Sbjct: 14  CSEIASIFSKPTQPYAPSLDILVSELSSVAARK--ARVFLYGVGREGLMLKALCMRLAHL 73

Query: 122 GLSSHQT-----------------------------------------------ESGSCV 169
           GLSSHQ                                                E+GS V
Sbjct: 74  GLSSHQVFDMNAPPIAGSDLLIASAGPGGFSTVDAICSVARSNGGRVLLLTAQPENGSSV 133

[Close]

BLAST of Carg15139 vs. NCBI nr
Match: XP_021619072.1 (uncharacterized protein LOC110619816 [Manihot esculenta] >OAY46033.1 hypothetical protein MANES_07G111200 [Manihot esculenta])

HSP 1 Score: 94.7 bits (234), Expect = 3.1e-16
Identity = 67/160 (41.88%), Postives = 80/160 (50.00%), Query Frame = 0


Query: 56  SLDFSRCRNCKATFSSPNTDIAPANLAIGESPSSDLTRRPDGRLFLYGVGREGLMLKALC 115
           SL    C +  ++FS P TD  P  L +  +  S +  + +GR+FLYGVGREGLMLKALC
Sbjct: 17  SLASQICTHIASSFSKP-TDPYPPPLDLIVTNLSAIAAQ-NGRVFLYGVGREGLMLKALC 76

Query: 116 IRLAHLGLSSH-----------------------------------------------QT 169
           +RLAHLGLS+H                                               Q 
Sbjct: 77  MRLAHLGLSTHFVFDMTTPPITSNDLFIASAGPGGFSTVDALCSLARSKGAKVLLLTAQP 136

[Close]

BLAST of Carg15139 vs. TAIR10
Match: AT5G52190.1 (Sugar isomerase (SIS) family protein)

HSP 1 Score: 64.3 bits (155), Expect = 8.1e-11
Identity = 47/165 (28.48%), Postives = 65/165 (39.39%), Query Frame = 0


Query: 52  EDALSLDFSRCRNCKATFSSPNTDIAPANLAIGESPSSDLTRRPDGRLFLYGVGREGLML 111
           ++  +L    C    + F+ P +   P    +    ++    R + R+FLYGVGREGLML
Sbjct: 7   QEMANLSSQICNQISSVFTKPTSPYPPPLDLLVTELTAISRNRNNSRIFLYGVGREGLML 66

Query: 112 KALCIRLAHLGLSSH--------------------------------------------- 169
           KA  +RL H GL +H                                             
Sbjct: 67  KAFAMRLFHFGLPTHLVFDMTTPPISSSDLLIASAGPGGFSTVDALCSVAKSNGAKVILI 126

[Close]

BLAST of Carg15139 vs. TrEMBL
Match: tr|A0A0A0LBC8|A0A0A0LBC8_CUCSA (3-hexulose-6-phosphate isomerase OS=Cucumis sativus OX=3659 GN=Csa_3G181970 PE=4 SV=1)

HSP 1 Score: 101.3 bits (251), Expect = 2.2e-18
Identity = 69/154 (44.81%), Postives = 77/154 (50.00%), Query Frame = 0


Query: 62  CRNCKATFSSPNTDIAPANLAIGESPSSDLTRRPDGRLFLYGVGREGLMLKALCIRLAHL 121
           C    + FS P    AP  L I  S  S +  R   R+FLYGVGREGLMLKALC+RLAHL
Sbjct: 14  CSEIASIFSKPTQPYAPP-LEILVSELSSVAER-KARVFLYGVGREGLMLKALCMRLAHL 73

Query: 122 GLSSHQT-----------------------------------------------ESGSCV 169
           GLSSHQ                                                E+GS V
Sbjct: 74  GLSSHQVFDMNAPPIAGSDLLIASAGPGGFSTVDAICSVARSKGGRVLVLTAQPENGSSV 133

[Close]

BLAST of Carg15139 vs. TrEMBL
Match: tr|A0A1S3AXT7|A0A1S3AXT7_CUCME (3-hexulose-6-phosphate isomerase OS=Cucumis melo OX=3656 GN=LOC103484066 PE=4 SV=1)

HSP 1 Score: 97.4 bits (241), Expect = 3.2e-17
Identity = 66/154 (42.86%), Postives = 76/154 (49.35%), Query Frame = 0


Query: 62  CRNCKATFSSPNTDIAPANLAIGESPSSDLTRRPDGRLFLYGVGREGLMLKALCIRLAHL 121
           C    + FS P    AP+   +    SS   R+   R+FLYGVGREGLMLKALC+RLAHL
Sbjct: 14  CSEIASIFSKPTQPYAPSLDILVSELSSVAARK--ARVFLYGVGREGLMLKALCMRLAHL 73

Query: 122 GLSSHQT-----------------------------------------------ESGSCV 169
           GLSSHQ                                                E+GS V
Sbjct: 74  GLSSHQVFDMNAPPIAGSDLLIASAGPGGFSTVDAICSVARSNGGRVLLLTAQPENGSSV 133

[Close]

BLAST of Carg15139 vs. TrEMBL
Match: tr|A0A2C9VKF5|A0A2C9VKF5_MANES (Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_07G111200 PE=4 SV=1)

HSP 1 Score: 94.7 bits (234), Expect = 2.1e-16
Identity = 67/160 (41.88%), Postives = 80/160 (50.00%), Query Frame = 0


Query: 56  SLDFSRCRNCKATFSSPNTDIAPANLAIGESPSSDLTRRPDGRLFLYGVGREGLMLKALC 115
           SL    C +  ++FS P TD  P  L +  +  S +  + +GR+FLYGVGREGLMLKALC
Sbjct: 17  SLASQICTHIASSFSKP-TDPYPPPLDLIVTNLSAIAAQ-NGRVFLYGVGREGLMLKALC 76

Query: 116 IRLAHLGLSSH-----------------------------------------------QT 169
           +RLAHLGLS+H                                               Q 
Sbjct: 77  MRLAHLGLSTHFVFDMTTPPITSNDLFIASAGPGGFSTVDALCSLARSKGAKVLLLTAQP 136

[Close]

BLAST of Carg15139 vs. TrEMBL
Match: tr|A0A218X3N6|A0A218X3N6_PUNGR (Uncharacterized protein OS=Punica granatum OX=22663 GN=CDL15_Pgr022936 PE=4 SV=1)

HSP 1 Score: 91.7 bits (226), Expect = 1.7e-15
Identity = 62/156 (39.74%), Postives = 75/156 (48.08%), Query Frame = 0


Query: 62  CRNCKATFSSP-NTDIAPANLAIGESPSSDLTRRPDGRLFLYGVGREGLMLKALCIRLAH 121
           C    A FS P     AP +L + E  S    +   GR+FLYGVGREGLMLKALC+RLAH
Sbjct: 16  CAEICAVFSKPTGPHQAPLDLLVAELASVAARK---GRVFLYGVGREGLMLKALCMRLAH 75

Query: 122 LGLSSH-----------------------------------------------QTESGSC 169
           LGLS+H                                               Q E+G+C
Sbjct: 76  LGLSAHLVFDMTTPPISSPDLLIASAGPGGFFTVDAICQIARSNGARVLLLTAQPETGTC 135

[Close]

BLAST of Carg15139 vs. TrEMBL
Match: tr|A0A2I0J390|A0A2I0J390_PUNGR (Uncharacterized protein OS=Punica granatum OX=22663 GN=CRG98_028841 PE=4 SV=1)

HSP 1 Score: 91.7 bits (226), Expect = 1.7e-15
Identity = 62/156 (39.74%), Postives = 75/156 (48.08%), Query Frame = 0


Query: 62  CRNCKATFSSP-NTDIAPANLAIGESPSSDLTRRPDGRLFLYGVGREGLMLKALCIRLAH 121
           C    A FS P     AP +L + E  S    +   GR+FLYGVGREGLMLKALC+RLAH
Sbjct: 9   CAEICAVFSKPTGPHQAPLDLLVAELASVAARK---GRVFLYGVGREGLMLKALCMRLAH 68

Query: 122 LGLSSH-----------------------------------------------QTESGSC 169
           LGLS+H                                               Q E+G+C
Sbjct: 69  LGLSAHLVFDMTTPPISSPDLLIASAGPGGFFTVDAICQIARSNGARVLLLTAQPETGTC 128

The following BLAST results are available for this feature:

BLAST of Carg15139 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004140780.1	3.3e-18	44.81	PREDICTED: uncharacterized protein LOC101217276 [Cucumis sativus] >KGN57361.1 3-...	[more]
XP_022945534.1	5.6e-18	43.23	uncharacterized protein LOC111449742 [Cucurbita moschata] >XP_023542323.1 unchar...	[more]
XP_022968332.1	2.8e-17	42.58	uncharacterized protein LOC111467597 [Cucurbita maxima]	[more]
XP_008439193.1	4.8e-17	42.86	PREDICTED: 3-hexulose-6-phosphate isomerase [Cucumis melo]	[more]
XP_021619072.1	3.1e-16	41.88	uncharacterized protein LOC110619816 [Manihot esculenta] >OAY46033.1 hypothetica...	[more]

BLAST of Carg15139 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G52190.1	8.1e-11	28.48	Sugar isomerase (SIS) family protein	[more]

BLAST of Carg15139 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Carg15139 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0LBC8\|A0A0A0LBC8_CUCSA	2.2e-18	44.81	3-hexulose-6-phosphate isomerase OS=Cucumis sativus OX=3659 GN=Csa_3G181970 PE=4...	[more]
tr\|A0A1S3AXT7\|A0A1S3AXT7_CUCME	3.2e-17	42.86	3-hexulose-6-phosphate isomerase OS=Cucumis melo OX=3656 GN=LOC103484066 PE=4 SV...	[more]
tr\|A0A2C9VKF5\|A0A2C9VKF5_MANES	2.1e-16	41.88	Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_07G111200 PE=4 SV=...	[more]
tr\|A0A218X3N6\|A0A218X3N6_PUNGR	1.7e-15	39.74	Uncharacterized protein OS=Punica granatum OX=22663 GN=CDL15_Pgr022936 PE=4 SV=1	[more]
tr\|A0A2I0J390\|A0A2I0J390_PUNGR	1.7e-15	39.74	Uncharacterized protein OS=Punica granatum OX=22663 GN=CRG98_028841 PE=4 SV=1	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0016853	isomerase activity

Vocabulary: **INTERPRO**
Term	Definition
IPR017552	PHI/rmpB

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0016853	isomerase activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg15139-RA	Carg15139-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR017552	3-hexulose-6-phosphate isomerase	PANTHER	PTHR43443	FAMILY NOT NAMED	coord: 96..126

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg15139	Cla006192	Watermelon (97103) v1	carwmB0990
Carg15139	Csa3G181970	Cucumber (Chinese Long) v2	carcuB1004
Carg15139	MELO3C006895	Melon (DHL92) v3.5.1	carmeB0966
Carg15139	CSPI03G16810	Wild cucumber (PI 183967)	carcpiB1027
Carg15139	Cucsa.107640	Cucumber (Gy14) v1	carcgyB1105
Carg15139	CmaCh18G012390	Cucurbita maxima (Rimu)	carcmaB1368
Carg15139	CmoCh16G001380	Cucurbita moschata (Rifu)	carcmoB1326
Carg15139	CmoCh18G012620	Cucurbita moschata (Rifu)	carcmoB1328
Carg15139	Lsi05G012420	Bottle gourd (USVL1VR-Ls)	carlsiB903
Carg15139	Cp4.1LG14g06070	Cucurbita pepo (Zucchini)	carcpeB1376
Carg15139	Cp4.1LG09g00840	Cucurbita pepo (Zucchini)	carcpeB1373
Carg15139	MELO3C006895.2	Melon (DHL92) v3.6.1	carmedB0975
Carg15139	CsaV3_3G016980	Cucumber (Chinese Long) v3	carcucB1032
Carg15139	Cla97C05G089950	Watermelon (97103) v2	carwmbB1042
Carg15139	Bhi01G000975	Wax gourd	carwgoB1159

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Carg15139	Carg22091	Silver-seed gourd	carcarB594

The following block(s) are covering this gene:


Gene	Organism	Block
Carg15139	Cucumber (Gy14) v2	carcgybB0976
Carg15139	Cucurbita maxima (Rimu)	carcmaB1366
Carg15139	Watermelon (Charleston Gray)	carwcgB0965