Carg15132 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg15132
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Pectin acetylesterase
Location	Cucurbita_argyrosperma_scaffold_078 : 699474 .. 699778 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAATCTGGCCGCCGTCGAAGCTCCATTACTAGTTCTTTTACTTCTTGCTGCAGCGCTGCGGTGGCCGCTCGCCGGAGCGCGGCTCCTAGTGGAGATGACGGTGGTCCAAAGCGCCTCTTCCATCGGCGCCTGTAAGTGAAAAAGATTCGTTTCCTTTTCTTTCCGTCTCTAATTTGGCATTTGATCGGATTTTGTTTTTGTATTTGGATTAGTCTGTTTAGACGGAAGCTTGCCGGCGTATCACCTGGACAGAGGATTCGGCGCCGGCGCGGGAAACTGGCTTCTACAGTTCGAGGTGAATAA

mRNA sequence

ATGAATCTGGCCGCCGTCGAAGCTCCATTACTAGTTCTTTTACTTCTTGCTGCAGCGCTGCGGTGGCCGCTCGCCGGAGCGCGGCTCCTAGTGGAGATGACGGTGGTCCAAAGCGCCTCTTCCATCGGCGCCTGTAAACGGAAGCTTGCCGGCGTATCACCTGGACAGAGGATTCGGCGCCGGCGCGGGAAACTGGCTTCTACAGTTCGAGGTGAATAA

Coding sequence (CDS)

ATGAATCTGGCCGCCGTCGAAGCTCCATTACTAGTTCTTTTACTTCTTGCTGCAGCGCTGCGGTGGCCGCTCGCCGGAGCGCGGCTCCTAGTGGAGATGACGGTGGTCCAAAGCGCCTCTTCCATCGGCGCCTGTAAACGGAAGCTTGCCGGCGTATCACCTGGACAGAGGATTCGGCGCCGGCGCGGGAAACTGGCTTCTACAGTTCGAGGTGAATAA

Protein sequence

MNLAAVEAPLLVLLLLAAALRWPLAGARLLVEMTVVQSASSIGACKRKLAGVSPGQRIRRRRGKLASTVRGE

Homology

[Close]

BLAST of Carg15132 vs. NCBI nr
Match: XP_022922469.1 (pectin acetylesterase 9 [Cucurbita moschata])

HSP 1 Score: 74.7 bits (182), Expect = 1.4e-10
Identity = 43/44 (97.73%), Postives = 44/44 (100.00%), Query Frame = 0


Query: 1  MNLAAVEAPLLVLLLLAAALRWPLAGARLLVEMTVVQSASSIGA 45
          MNLAAVEAPLLVLLLLAAALRWPLAGARLLVEMTVVQ+ASSIGA
Sbjct: 1  MNLAAVEAPLLVLLLLAAALRWPLAGARLLVEMTVVQNASSIGA 44

[Close]

BLAST of Carg15132 vs. NCBI nr
Match: XP_022985445.1 (pectin acetylesterase 9 [Cucurbita maxima])

HSP 1 Score: 74.7 bits (182), Expect = 1.4e-10
Identity = 43/44 (97.73%), Postives = 44/44 (100.00%), Query Frame = 0


Query: 1  MNLAAVEAPLLVLLLLAAALRWPLAGARLLVEMTVVQSASSIGA 45
          MNLAAVEAPLLVLLLLAAALRWPLAGARLLVEMTVVQ+ASSIGA
Sbjct: 1  MNLAAVEAPLLVLLLLAAALRWPLAGARLLVEMTVVQNASSIGA 44

[Close]

BLAST of Carg15132 vs. NCBI nr
Match: XP_023552008.1 (pectin acetylesterase 9 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 74.7 bits (182), Expect = 1.4e-10
Identity = 43/44 (97.73%), Postives = 44/44 (100.00%), Query Frame = 0


Query: 1  MNLAAVEAPLLVLLLLAAALRWPLAGARLLVEMTVVQSASSIGA 45
          MNLAAVEAPLLVLLLLAAALRWPLAGARLLVEMTVVQ+ASSIGA
Sbjct: 1  MNLAAVEAPLLVLLLLAAALRWPLAGARLLVEMTVVQNASSIGA 44

[Close]

BLAST of Carg15132 vs. NCBI nr
Match: XP_008439237.1 (PREDICTED: pectin acetylesterase 9 isoform X1 [Cucumis melo] >XP_008439238.1 PREDICTED: pectin acetylesterase 9 isoform X1 [Cucumis melo])

HSP 1 Score: 55.1 bits (131), Expect = 1.2e-04
Identity = 34/44 (77.27%), Postives = 38/44 (86.36%), Query Frame = 0


Query: 1  MNLAAVEAPLLVLLLLAAALRWPLAGARLLVEMTVVQSASSIGA 45
          M+  AVEAPLL+L LLAAAL  PL GARLLVEMTVV++ASSIGA
Sbjct: 1  MSPTAVEAPLLLLFLLAAALLCPLGGARLLVEMTVVRNASSIGA 44

[Close]

BLAST of Carg15132 vs. NCBI nr
Match: XP_008439239.1 (PREDICTED: pectin acetylesterase 9 isoform X2 [Cucumis melo])

HSP 1 Score: 55.1 bits (131), Expect = 1.2e-04
Identity = 34/44 (77.27%), Postives = 38/44 (86.36%), Query Frame = 0


Query: 1  MNLAAVEAPLLVLLLLAAALRWPLAGARLLVEMTVVQSASSIGA 45
          M+  AVEAPLL+L LLAAAL  PL GARLLVEMTVV++ASSIGA
Sbjct: 1  MSPTAVEAPLLLLFLLAAALLCPLGGARLLVEMTVVRNASSIGA 44

[Close]

BLAST of Carg15132 vs. TrEMBL
Match: tr|A0A1S3AYA0|A0A1S3AYA0_CUCME (Pectin acetylesterase OS=Cucumis melo OX=3656 GN=LOC103484085 PE=3 SV=1)

HSP 1 Score: 55.1 bits (131), Expect = 7.7e-05
Identity = 34/44 (77.27%), Postives = 38/44 (86.36%), Query Frame = 0


Query: 1  MNLAAVEAPLLVLLLLAAALRWPLAGARLLVEMTVVQSASSIGA 45
          M+  AVEAPLL+L LLAAAL  PL GARLLVEMTVV++ASSIGA
Sbjct: 1  MSPTAVEAPLLLLFLLAAALLCPLGGARLLVEMTVVRNASSIGA 44

[Close]

BLAST of Carg15132 vs. TrEMBL
Match: tr|A0A1S3AYY8|A0A1S3AYY8_CUCME (Pectin acetylesterase OS=Cucumis melo OX=3656 GN=LOC103484085 PE=3 SV=1)

HSP 1 Score: 55.1 bits (131), Expect = 7.7e-05
Identity = 34/44 (77.27%), Postives = 38/44 (86.36%), Query Frame = 0


Query: 1  MNLAAVEAPLLVLLLLAAALRWPLAGARLLVEMTVVQSASSIGA 45
          M+  AVEAPLL+L LLAAAL  PL GARLLVEMTVV++ASSIGA
Sbjct: 1  MSPTAVEAPLLLLFLLAAALLCPLGGARLLVEMTVVRNASSIGA 44

[Close]

BLAST of Carg15132 vs. TrEMBL
Match: tr|A0A0A0L8Q6|A0A0A0L8Q6_CUCSA (Pectin acetylesterase OS=Cucumis sativus OX=3659 GN=Csa_3G182200 PE=3 SV=1)

HSP 1 Score: 55.1 bits (131), Expect = 7.7e-05
Identity = 34/44 (77.27%), Postives = 38/44 (86.36%), Query Frame = 0


Query: 1  MNLAAVEAPLLVLLLLAAALRWPLAGARLLVEMTVVQSASSIGA 45
          M+  AVEAPLL+L LLAAAL  PL GARLLVEMTVV++ASSIGA
Sbjct: 1  MSPTAVEAPLLLLFLLAAALLCPLGGARLLVEMTVVRNASSIGA 44

The following BLAST results are available for this feature:

BLAST of Carg15132 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022922469.1	1.4e-10	97.73	pectin acetylesterase 9 [Cucurbita moschata]	[more]
XP_022985445.1	1.4e-10	97.73	pectin acetylesterase 9 [Cucurbita maxima]	[more]
XP_023552008.1	1.4e-10	97.73	pectin acetylesterase 9 [Cucurbita pepo subsp. pepo]	[more]
XP_008439237.1	1.2e-04	77.27	PREDICTED: pectin acetylesterase 9 isoform X1 [Cucumis melo] >XP_008439238.1 PRE...	[more]
XP_008439239.1	1.2e-04	77.27	PREDICTED: pectin acetylesterase 9 isoform X2 [Cucumis melo]	[more]

BLAST of Carg15132 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of Carg15132 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Carg15132 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3AYA0\|A0A1S3AYA0_CUCME	7.7e-05	77.27	Pectin acetylesterase OS=Cucumis melo OX=3656 GN=LOC103484085 PE=3 SV=1	[more]
tr\|A0A1S3AYY8\|A0A1S3AYY8_CUCME	7.7e-05	77.27	Pectin acetylesterase OS=Cucumis melo OX=3656 GN=LOC103484085 PE=3 SV=1	[more]
tr\|A0A0A0L8Q6\|A0A0A0L8Q6_CUCSA	7.7e-05	77.27	Pectin acetylesterase OS=Cucumis sativus OX=3659 GN=Csa_3G182200 PE=3 SV=1	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg15132-RA	Carg15132-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 53..72

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Carg15132	Watermelon (Charleston Gray)	carwcgB0965
Carg15132	Watermelon (97103) v1	carwmB0990
Carg15132	Watermelon (97103) v2	carwmbB1041
Carg15132	Watermelon (97103) v2	carwmbB1042
Carg15132	Wax gourd	carwgoB1159
Carg15132	Silver-seed gourd	carcarB585
Carg15132	Silver-seed gourd	carcarB594
Carg15132	Cucumber (Gy14) v2	carcgybB0976
Carg15132	Cucumber (Gy14) v1	carcgyB1105
Carg15132	Cucurbita maxima (Rimu)	carcmaB1365
Carg15132	Cucurbita maxima (Rimu)	carcmaB1366
Carg15132	Cucurbita maxima (Rimu)	carcmaB1368
Carg15132	Cucurbita maxima (Rimu)	carcmaB1369
Carg15132	Cucurbita moschata (Rifu)	carcmoB1325
Carg15132	Cucurbita moschata (Rifu)	carcmoB1326
Carg15132	Cucurbita moschata (Rifu)	carcmoB1328
Carg15132	Cucurbita moschata (Rifu)	carcmoB1329
Carg15132	Cucurbita pepo (Zucchini)	carcpeB1373
Carg15132	Cucurbita pepo (Zucchini)	carcpeB1375
Carg15132	Cucurbita pepo (Zucchini)	carcpeB1376
Carg15132	Cucurbita pepo (Zucchini)	carcpeB1377
Carg15132	Wild cucumber (PI 183967)	carcpiB1027
Carg15132	Cucumber (Chinese Long) v2	carcuB1004
Carg15132	Cucumber (Chinese Long) v3	carcucB1032
Carg15132	Bottle gourd (USVL1VR-Ls)	carlsiB903
Carg15132	Melon (DHL92) v3.5.1	carmeB0966
Carg15132	Melon (DHL92) v3.6.1	carmedB0975