Carg14901 (gene) Silver-seed gourd

Overview
NameCarg14901
Typegene
OrganismCucurbita argyrosperma (Silver-seed gourd)
DescriptionBTB/POZ domain-containing protein isoform X1
LocationCucurbita_argyrosperma_scaffold_079 : 568280 .. 569484 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
AATTAAATCTCTGTTTGATCTTCCATGGAGACAATTTGATAATTAGATTCAGTCCTCAATGTGGGTTTTATCGGTTCTTTATGCAATTTATTGGATCGGAAGAAGAAGCAGTTCGGTAATGGCTATAATTCTCAGCATTTTCACTTTTTGTACTTGTATGTCGCTGTTTAGGCTTTGATTTCGCTACCTAATTTGGTCGTAATCGTGATTTAACTCCATTATCTCTCAAAATGTTGCTGCGTTAGAGATCGTACAGTGTATTTCGAGGAGCGTTCTTTCTTTCAGTCGAGACCTCTACGATTGCAGTTTTGGGAAAATCATTCGTCTGTAATGATCTGAGAGAGAGCTACAAAGCTAATTATTATCAGAAACTAGAAAGAAAAAATGACTCAAGATTTTTTGTGTTTGGTTCTGTAGATTATACAGAAGAATCTTCCGAACATGGCAGACAAATCGGACAAGGATGCCTCCGATTGGTAAAACTTTTTTTTCTTCATGCATTTGTTTAACAGTTTCGTTTTCCCTGTCTTGATTGTTTGGAAACGGTCGCTCATCTTCGTTCTGGTTTGCAGGTTGCCTAACCCAAAATCTAGAACTGATATGCAGTTCCATGTCAGTGGGGTGCCCTTGACTTAGGTCAGGGTGAGAATGTGGGATTCTGGATTCAGTTACATATTTGTTTTCTTCAAATCTCTGTGATTTTTCGGTTATCTTTGTTTGATGAAAGCCCCACGTCAGCTAATTTAGTGAATGTTCATGGGTTTATAATCAAGGAATACTATCTCCACTAGTACGAGAGCTTATGCTCAAAGTGGATAATATCATACCATTGTGGAGAGTCGTGTTCATCTAACAATCTTTATCGTTTTTCTACAGGATATCATAGTAGAAAAGTCGGGCAAGACAGCGGAGTTACTGAATGAGCAATCTGAGAACAGTATAGGTCAATTCCTCAGAAGCATGAACTCGTTGCAAGGTTCTGCCATGGGTTTCAACTGCAAATGTCATGTGAGAATGTGCTTCCTTTAGCTTGTCTTGCTTTATATCTTGTGATGACTGGAAGTCACAGCCCAAATAACCTGTTGAGCAAAGCACTTACTTTCTTTGAACAGAAAATCCTCCCTAGCTGGATTGAAGCCATTAAGGCTTTTCTTACAACAGAAGATACCATGCAACAGGCTGTGGAAATAGGCCTTGTTGATGAA

mRNA sequence

AATTAAATCTCTGTTTGATCTTCCATGGAGACAATTTGATAATTAGATTCAGTCCTCAATGTGGGTTTTATCGGTTCTTTATGCAATTTATTGGATCGGAAGAAGAAGCAGTTCGATTATACAGAAGAATCTTCCGAACATGGCAGACAAATCGGACAAGGATGCCTCCGATTGGTTGCCTAACCCAAAATCTAGAACTGATATGCAGTTCCATAAAATCCTCCCTAGCTGGATTGAAGCCATTAAGGCTTTTCTTACAACAGAAGATACCATGCAACAGGCTGTGGAAATAGGCCTTGTTGATGAA

Coding sequence (CDS)

ATGTGGGTTTTATCGGTTCTTTATGCAATTTATTGGATCGGAAGAAGAAGCAGTTCGATTATACAGAAGAATCTTCCGAACATGGCAGACAAATCGGACAAGGATGCCTCCGATTGGTTGCCTAACCCAAAATCTAGAACTGATATGCAGTTCCATAAAATCCTCCCTAGCTGGATTGAAGCCATTAAGGCTTTTCTTACAACAGAAGATACCATGCAACAGGCTGTGGAAATAGGCCTTGTTGATGAA

Protein sequence

MWVLSVLYAIYWIGRRSSSIIQKNLPNMADKSDKDASDWLPNPKSRTDMQFHKILPSWIEAIKAFLTTEDTMQQAVEIGLVDE
Homology
[Close]
BLAST of Carg14901 vs. NCBI nr
Match: XP_022974710.1 (BTB/POZ domain-containing protein At5g17580-like isoform X1 [Cucurbita maxima])

HSP 1 Score: 78.6 bits (192), Expect = 1.1e-11
Identity = 60/179 (33.52%), Postives = 64/179 (35.75%), Query Frame = 0 

Query: 1   MWVLSVLYAIYWIGRRSSSIIQKNLPNMADKSDKDASDWLPNPKSRTDMQFH-------- 60
           MW  SVL AIY  GRR  SII KNL NM DKSDKD S WLP PKSR DMQFH        
Sbjct: 1   MWFSSVLAAIYCTGRRIGSIILKNLQNMVDKSDKDVSYWLPKPKSRIDMQFHVRGVPFTL 60

Query: 61  ------------------------------------------------------------ 84
                                                                       
Sbjct: 61  ERDIIVEKSAKIVEILNEQSDDSIYQFLRNIPAHPKTFELVARFCHGFELQMSCENVLPL 120

[Close]
BLAST of Carg14901 vs. NCBI nr
Match: XP_023540109.1 (BTB/POZ domain-containing protein At5g17580-like isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 74.3 bits (181), Expect = 2.1e-10
Identity = 59/179 (32.96%), Postives = 63/179 (35.20%), Query Frame = 0 

Query: 1   MWVLSVLYAIYWIGRRSSSIIQKNLPNMADKSDKDASDWLPNPKSRTDMQFH-------- 60
           MW  SVL AI   GRR  SII +NL NM DKSDKD S WLP PKSR DMQFH        
Sbjct: 1   MWFSSVLAAICCTGRRIGSIILRNLQNMVDKSDKDVSYWLPKPKSRIDMQFHVRGVPFTL 60

Query: 61  ------------------------------------------------------------ 84
                                                                       
Sbjct: 61  ERDIIVEKSAKIVEILNEQSDDSIYQFLRNIPAHPKTFELVARFCHGFELQMSCENVLPL 120

[Close]
BLAST of Carg14901 vs. NCBI nr
Match: XP_022946069.1 (BTB/POZ domain-containing protein At5g17580 isoform X1 [Cucurbita moschata] >XP_022946076.1 BTB/POZ domain-containing protein At5g17580 isoform X1 [Cucurbita moschata])

HSP 1 Score: 72.0 bits (175), Expect = 1.1e-09
Identity = 58/179 (32.40%), Postives = 61/179 (34.08%), Query Frame = 0 

Query: 1   MWVLSVLYAIYWIGRRSSSIIQKNLPNMADKSDKDASDWLPNPKSRTDMQFH-------- 60
           MW  SVL  I   GRR  SII KNL NM DKSDKD S WLP PKSR DMQFH        
Sbjct: 1   MWFSSVLAVICCTGRRIGSIILKNLQNMVDKSDKDVSYWLPKPKSRIDMQFHVRGVPFTL 60

Query: 61  ------------------------------------------------------------ 84
                                                                       
Sbjct: 61  ERDIIVEKSAKIVEILNEQSDDSIYQFLRNIPAHPKTFELVARFCHGFELQMSCENVLPL 120

[Close]
BLAST of Carg14901 vs. NCBI nr
Match: XP_022147037.1 (BTB/POZ domain-containing protein At5g17580 isoform X1 [Momordica charantia])

HSP 1 Score: 70.9 bits (172), Expect = 2.4e-09
Identity = 56/182 (30.77%), Postives = 67/182 (36.81%), Query Frame = 0 

Query: 1   MWVLSVLYAIYWIGRR---SSSIIQKNLPNMADKSDKDASDWLPNPKSRTDMQFH----- 60
           MW LSVLY I+  GRR   + +IIQK L NM D+SDK+ S WL  PKSRTD++FH     
Sbjct: 1   MWFLSVLYVIFCFGRRICSTMTIIQKKLKNMEDRSDKNVSYWLSEPKSRTDIEFHVSGMP 60

Query: 61  ------------------------------------------------------------ 84
                                                                       
Sbjct: 61  FTLNREVIVEKSAKIAEILKKQPEESICRFLTNIPARPKTFELVARFCYGFELEMSCENV 120

[Close]
BLAST of Carg14901 vs. NCBI nr
Match: XP_008438302.1 (PREDICTED: BTB/POZ domain-containing protein At5g17580 isoform X1 [Cucumis melo])

HSP 1 Score: 69.3 bits (168), Expect = 6.9e-09
Identity = 53/160 (33.12%), Postives = 56/160 (35.00%), Query Frame = 0 

Query: 20  IIQKNLPNMADKSDKDASDWLPNPKSRTDMQFH--------------------------- 79
           IIQKN+ NM DKSDKDAS WLP PKSRTD+QFH                           
Sbjct: 43  IIQKNIKNMVDKSDKDASYWLPKPKSRTDIQFHVSGVPFNLDRDIIVQKSGKISQLLNEK 102

Query: 80  ------------------------------------------------------------ 84
                                                                       
Sbjct: 103 SEDNIQEFLRNIPAHPNTFELVARFCHGFRLTMSCENVLPLACLAFYLGMTESHSPNNLL 162

[Close]
BLAST of Carg14901 vs. TrEMBL
Match: tr|A0A1S3AWQ2|A0A1S3AWQ2_CUCME (BTB/POZ domain-containing protein At5g17580 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103483450 PE=3 SV=1)

HSP 1 Score: 69.3 bits (168), Expect = 4.6e-09
Identity = 53/160 (33.12%), Postives = 56/160 (35.00%), Query Frame = 0 

Query: 20  IIQKNLPNMADKSDKDASDWLPNPKSRTDMQFH--------------------------- 79
           IIQKN+ NM DKSDKDAS WLP PKSRTD+QFH                           
Sbjct: 43  IIQKNIKNMVDKSDKDASYWLPKPKSRTDIQFHVSGVPFNLDRDIIVQKSGKISQLLNEK 102

Query: 80  ------------------------------------------------------------ 84
                                                                       
Sbjct: 103 SEDNIQEFLRNIPAHPNTFELVARFCHGFRLTMSCENVLPLACLAFYLGMTESHSPNNLL 162

[Close]
BLAST of Carg14901 vs. TrEMBL
Match: tr|A0A1S3AWP1|A0A1S3AWP1_CUCME (BTB/POZ domain-containing protein At5g17580 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103483450 PE=3 SV=1)

HSP 1 Score: 57.4 bits (137), Expect = 1.8e-05
Identity = 47/152 (30.92%), Postives = 49/152 (32.24%), Query Frame = 0 

Query: 28  MADKSDKDASDWLPNPKSRTDMQFH----------------------------------- 84
           M DKSDKDAS WLP PKSRTD+QFH                                   
Sbjct: 1   MVDKSDKDASYWLPKPKSRTDIQFHVSGVPFNLDRDIIVQKSGKISQLLNEKSEDNIQEF 60

[Close]
BLAST of Carg14901 vs. TrEMBL
Match: tr|A0A0A0L9A5|A0A0A0L9A5_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G129530 PE=3 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 1.5e-04
Identity = 26/31 (83.87%), Postives = 27/31 (87.10%), Query Frame = 0 

Query: 53  KILPSWIEAIKAFLTTEDTMQQAVEIGLVDE 84
           KILPSW E IKAFLTTED MQQAV+ GLVDE
Sbjct: 125 KILPSWNETIKAFLTTEDIMQQAVDTGLVDE 155

The following BLAST results are available for this feature:
BLAST of Carg14901 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022974710.11.1e-1133.52BTB/POZ domain-containing protein At5g17580-like isoform X1 [Cucurbita maxima][more]
XP_023540109.12.1e-1032.96BTB/POZ domain-containing protein At5g17580-like isoform X2 [Cucurbita pepo subs... [more]
XP_022946069.11.1e-0932.40BTB/POZ domain-containing protein At5g17580 isoform X1 [Cucurbita moschata] >XP_... [more]
XP_022147037.12.4e-0930.77BTB/POZ domain-containing protein At5g17580 isoform X1 [Momordica charantia][more]
XP_008438302.16.9e-0933.13PREDICTED: BTB/POZ domain-containing protein At5g17580 isoform X1 [Cucumis melo][more]
BLAST of Carg14901 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of Carg14901 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Carg14901 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A1S3AWQ2|A0A1S3AWQ2_CUCME4.6e-0933.13BTB/POZ domain-containing protein At5g17580 isoform X1 OS=Cucumis melo OX=3656 G... [more]
tr|A0A1S3AWP1|A0A1S3AWP1_CUCME1.8e-0530.92BTB/POZ domain-containing protein At5g17580 isoform X2 OS=Cucumis melo OX=3656 G... [more]
tr|A0A0A0L9A5|A0A0A0L9A5_CUCSA1.5e-0483.87Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G129530 PE=3 SV=1[more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg14901-RACarg14901-RAmRNA