Carg13936 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg13936
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	transcription initiation factor TFIID subunit 9
Location	Cucurbita_argyrosperma_scaffold_042 : 885499 .. 886532 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexonthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCAAGTTTCATGTACAGGTGAAAGGGGCAGTGAGGAAATAACTGAGGGAGAGCAGGACCTGCCAAGGGATGCAAAGATTGTGAAATACTTATGAAATCAATGAGAGTTGAAGATTATGAACTGCGGATTTGCACCAGTTTCTTGAGCTGTGGTATCGATATGTTGACGACGTACTGATGGACGCAGGAGTTTACTCGGAGCATGCAGGCAAGGCTGCTATGTGATGGTGTGACGCTTGCTTTCCAGTCAAAAGTTAATTTCAGCTTCTCACGACCTTCTCCAAGAGAGGTAACATAGCTTCATAGTCCCAACTAGATGTGATCGATTTGTGGCGAGTGACTCTTTGGACTATTAAGCTCGGAAATAGGACTTACTGATAGAATATCAGTAATTATTTGAGTAATATGACAATCATTCATCCATGATAAGTGTGAGATCCTACGTCAGTTAGATAGGAGAATGAAGTATTCCTTATAAGGGTGTGGAAATCTCTTTCTATTAGACGCGTTTTAAAAATCTTGAGGGAAGCCCGAGCTGTTACAATAAGTTACGGCAGCTTAGAACCAAATCATTGCCTTGTTAGTGAGAAATATTTATGGTATGTAATAGAAAGATGATGATCATATCACTGATTTCCCTTACCATCCTCTCTGCCATTAAAGGAAGGGTGTTTAACCATGTGTTTCTGTTTTGTCAGGTTCTTCTAGAGTTGGCCAGAAATAGAAACAAAATACCATTGCCAAGGTCCATTGGTGGGCCTGGTATCGCCATTCCACCCAATCAAGACACATTGCTCTCCCAACTATCAACTGGCAAAAGCAACCAGTCGAAACCATGGAGGGGCCTTCTGGGGTAAGGTAGTAGAACAAGGGGTTCGTCTCGGAGGAGGATCAACCTGAAAGAGGAGGTTGTTTGGTCCTCTTGTGCCACCTTTTTGAGATCGCCATTCGCAAGAAAGGAGGAGTGTTTTCCTTGATCGATTTTGCTATGACCCCATTGAAGAAAAAAGAGAGTCGAGTCTAGAGTGACACG

mRNA sequence

ATGCAAGTTTCATGTACAGGTGAAAGGGGCAGTGAGGAAATAACTGAGGGAGAGCAGGACCTGCCAAGGGATGCAAAGATTGAGTTTACTCGGAGCATGCAGGCAAGGCTGCTATGTGATGGTGTGACGCTTGCTTTCCAGTCAAAAGTTAATTTCAGCTTCTCACGACCTTCTCCAAGAGAGGTTCTTCTAGAGTTGGCCAGAAATAGAAACAAAATACCATTGCCAAGGTCCATTGGTGGGCCTGGTATCGCCATTCCACCCAATCAAGACACATTGCTCTCCCAACTATCAACTGGCAAAAGCAACCAGTCGAAACCATGGAGGGGCCTTCTGGGGTAAGGTAGTAGAACAAGGGGTTCGTCTCGGAGGAGGATCAACCTGAAAGAGGAGGTTGTTTGGTCCTCTTGTGCCACCTTTTTGAGATCGCCATTCGCAAGAAAGGAGGAGTGTTTTCCTTGATCGATTTTGCTATGACCCCATTGAAGAAAAAAGAGAGTCGAGTCTAGAGTGACACG

Coding sequence (CDS)

ATGCAAGTTTCATGTACAGGTGAAAGGGGCAGTGAGGAAATAACTGAGGGAGAGCAGGACCTGCCAAGGGATGCAAAGATTGAGTTTACTCGGAGCATGCAGGCAAGGCTGCTATGTGATGGTGTGACGCTTGCTTTCCAGTCAAAAGTTAATTTCAGCTTCTCACGACCTTCTCCAAGAGAGGTTCTTCTAGAGTTGGCCAGAAATAGAAACAAAATACCATTGCCAAGGTCCATTGGTGGGCCTGGTATCGCCATTCCACCCAATCAAGACACATTGCTCTCCCAACTATCAACTGGCAAAAGCAACCAGTCGAAACCATGGAGGGGCCTTCTGGGGTAA

Protein sequence

MQVSCTGERGSEEITEGEQDLPRDAKIEFTRSMQARLLCDGVTLAFQSKVNFSFSRPSPREVLLELARNRNKIPLPRSIGGPGIAIPPNQDTLLSQLSTGKSNQSKPWRGLLG

Homology

[Close]

BLAST of Carg13936 vs. NCBI nr
Match: XP_022953465.1 (transcription initiation factor TFIID subunit 9 [Cucurbita moschata])

HSP 1 Score: 116.7 bits (291), Expect = 5.1e-23
Identity = 68/127 (53.54%), Postives = 80/127 (62.99%), Query Frame = 0


Query: 7   GERGSEEITEGEQDLPRDAKIEFT--RSM------------------------------- 66
           G+RG +E++EG++DLPRDAKI  T  +SM                               
Sbjct: 34  GDRGVKEMSEGDEDLPRDAKIVKTLLKSMGVEDYEPRVIHQFLELWYRYVVDVLTDAQVY 93

Query: 67  -----QARLLCDGVTLAFQSKVNFSFSRPSPREVLLELARNRNKIPLPRSIGGPGIAIPP 96
                +A + CD V LA QSKVNFSFS+P PREVLLELARNRNKIPLPRSIGGPGIA+PP
Sbjct: 94  SEHAGKAAIDCDDVKLAIQSKVNFSFSQPPPREVLLELARNRNKIPLPRSIGGPGIALPP 153

[Close]

BLAST of Carg13936 vs. NCBI nr
Match: XP_022144675.1 (transcription initiation factor TFIID subunit 9 [Momordica charantia])

HSP 1 Score: 113.6 bits (283), Expect = 4.3e-22
Identity = 65/127 (51.18%), Postives = 78/127 (61.42%), Query Frame = 0


Query: 7   GERGSEEITEGEQDLPRDAKI--EFTRSM------------------------------- 66
           GERGS+E+TEG++DLPRDA+I     +SM                               
Sbjct: 26  GERGSKEVTEGDEDLPRDARIVKALLKSMGVEDYEPRVIHQFLELWYRYVVDVLTDAQVY 85

Query: 67  -----QARLLCDGVTLAFQSKVNFSFSRPSPREVLLELARNRNKIPLPRSIGGPGIAIPP 96
                +A + CD V LA QSKVNFSFS+P PREVLLELARNRNKIPLPR+IGGPGIA+PP
Sbjct: 86  SEHACKAAIDCDDVKLAIQSKVNFSFSQPPPREVLLELARNRNKIPLPRTIGGPGIALPP 145

[Close]

BLAST of Carg13936 vs. NCBI nr
Match: XP_022992393.1 (transcription initiation factor TFIID subunit 9 [Cucurbita maxima])

HSP 1 Score: 113.2 bits (282), Expect = 5.7e-22
Identity = 67/132 (50.76%), Postives = 81/132 (61.36%), Query Frame = 0


Query: 2   QVSCTGERGSEEITEGEQDLPRDAKIEFT--RSM-------------------------- 61
           + S  G+RG +E++EG++DLPRDA+I  T  +SM                          
Sbjct: 25  RTSQLGDRGVKEMSEGDEDLPRDARIVKTLLKSMGVEDYEPRVIHQFLELWYRYVVDVLT 84

Query: 62  ----------QARLLCDGVTLAFQSKVNFSFSRPSPREVLLELARNRNKIPLPRSIGGPG 96
                     +A + CD V LA QSKVNFSFS+P PREVLLELARNRNKIPLPRSIGGPG
Sbjct: 85  DAQVYSEHAGKAAIDCDDVKLAIQSKVNFSFSQPPPREVLLELARNRNKIPLPRSIGGPG 144

[Close]

BLAST of Carg13936 vs. NCBI nr
Match: XP_023547956.1 (transcription initiation factor TFIID subunit 9 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 110.2 bits (274), Expect = 4.8e-21
Identity = 54/76 (71.05%), Postives = 63/76 (82.89%), Query Frame = 0


Query: 20  DLPRDAKIEFTRSMQARLLCDGVTLAFQSKVNFSFSRPSPREVLLELARNRNKIPLPRSI 79
           D+  DA++    + +A + CD V LA QSKVNFSFS+P PREVLLELARNRNKIPLPRSI
Sbjct: 45  DVLTDAQVYSEHAAKAAIDCDDVKLAIQSKVNFSFSQPPPREVLLELARNRNKIPLPRSI 104

Query: 80  GGPGIAIPPNQDTLLS 96
           GGPGIA+PP+QDTLLS
Sbjct: 105 GGPGIALPPDQDTLLS 120

[Close]

BLAST of Carg13936 vs. NCBI nr
Match: XP_011659620.1 (PREDICTED: transcription initiation factor TFIID subunit 9 [Cucumis sativus] >XP_011659621.1 PREDICTED: transcription initiation factor TFIID subunit 9 [Cucumis sativus] >KGN45487.1 hypothetical protein Csa_7G449470 [Cucumis sativus])

HSP 1 Score: 109.4 bits (272), Expect = 8.2e-21
Identity = 54/76 (71.05%), Postives = 63/76 (82.89%), Query Frame = 0


Query: 20  DLPRDAKIEFTRSMQARLLCDGVTLAFQSKVNFSFSRPSPREVLLELARNRNKIPLPRSI 79
           D+  DA++    + +A + CD V LA QSKVNFSFS+P PREVLLELARNRNKIPLPRSI
Sbjct: 45  DVLTDAQVYSEHAGKAAIDCDDVKLAIQSKVNFSFSQPPPREVLLELARNRNKIPLPRSI 104

Query: 80  GGPGIAIPPNQDTLLS 96
           GGPGIA+PP+QDTLLS
Sbjct: 105 GGPGIALPPDQDTLLS 120

[Close]

BLAST of Carg13936 vs. TAIR10
Match: AT1G54140.1 (TATA binding protein associated factor 21kDa subunit)

HSP 1 Score: 96.7 bits (239), Expect = 9.9e-21
Identity = 46/72 (63.89%), Postives = 56/72 (77.78%), Query Frame = 0


Query: 24  DAKIEFTRSMQARLLCDGVTLAFQSKVNFSFSRPSPREVLLELARNRNKIPLPRSIGGPG 83
           DA++    + +  + CD V LA QSKVNFSFS+P PREVLLELA +RNKIPLP+SI GPG
Sbjct: 50  DAQVYSEHASKPNIDCDDVKLAIQSKVNFSFSQPPPREVLLELAASRNKIPLPKSIAGPG 109

Query: 84  IAIPPNQDTLLS 96
           + +PP QDTLLS
Sbjct: 110 VPLPPEQDTLLS 121

[Close]

BLAST of Carg13936 vs. Swiss-Prot
Match: sp|Q9SYH2|TAF9_ARATH (Transcription initiation factor TFIID subunit 9 OS=Arabidopsis thaliana OX=3702 GN=TAF9 PE=1 SV=1)

HSP 1 Score: 96.7 bits (239), Expect = 1.8e-19
Identity = 46/72 (63.89%), Postives = 56/72 (77.78%), Query Frame = 0


Query: 24  DAKIEFTRSMQARLLCDGVTLAFQSKVNFSFSRPSPREVLLELARNRNKIPLPRSIGGPG 83
           DA++    + +  + CD V LA QSKVNFSFS+P PREVLLELA +RNKIPLP+SI GPG
Sbjct: 50  DAQVYSEHASKPNIDCDDVKLAIQSKVNFSFSQPPPREVLLELAASRNKIPLPKSIAGPG 109

Query: 84  IAIPPNQDTLLS 96
           + +PP QDTLLS
Sbjct: 110 VPLPPEQDTLLS 121

[Close]

BLAST of Carg13936 vs. Swiss-Prot
Match: sp|Q09869|TAF9_SCHPO (Transcription initiation factor TFIID subunit 9 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=taf9 PE=1 SV=1)

HSP 1 Score: 55.1 bits (131), Expect = 6.0e-07
Identity = 32/93 (34.41%), Postives = 54/93 (58.06%), Query Frame = 0


Query: 19  QDLPRDAKI--EFTRSMQARLLCDGVTLAFQSKVNFSFSRPSPREVLLELARNRNKIPLP 78
           Q L +D+++  E +R   A +  + V LA  S++N SF+ P P+E LLELA  RN+ PLP
Sbjct: 49  QQLIQDSQVYAEHSRGQNAPISVEDVRLAVASQINHSFTGPPPKEFLLELAMERNRKPLP 108

Query: 79  RSIGGPGIAIPPNQDTLL--SQLSTGKSNQSKP 108
           +     G  +PP +  L   + + + ++ Q++P
Sbjct: 109 QIQPSYGFRLPPEKYCLTQPNWIVSNETQQNQP 141

[Close]

BLAST of Carg13936 vs. Swiss-Prot
Match: sp|Q17QQ4|TAF9_BOVIN (Transcription initiation factor TFIID subunit 9 OS=Bos taurus OX=9913 GN=TAF9 PE=2 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 1.0e-06
Identity = 32/83 (38.55%), Postives = 47/83 (56.63%), Query Frame = 0


Query: 24  DAKIEFTRSMQARLLCDGVTLAFQSKVNFSFSRPSPREVLLELARNRNKIPLPRSIGGPG 83
           DAKI  + + +A +  D V LA Q + + SF+ P PR+ LL++AR RN+ PLP      G
Sbjct: 53  DAKIYSSHAKKATVDADDVRLAIQCRADQSFTSPPPRDFLLDIARQRNQTPLPLIKPYSG 112

Query: 84  IAIPPNQDTLLSQLSTGKSNQSK 107
             +PP++  L +     KS Q K
Sbjct: 113 PRLPPDRYCLTAPNYRLKSLQKK 135

[Close]

BLAST of Carg13936 vs. Swiss-Prot
Match: sp|Q16594|TAF9_HUMAN (Transcription initiation factor TFIID subunit 9 OS=Homo sapiens OX=9606 GN=TAF9 PE=1 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 1.0e-06
Identity = 32/83 (38.55%), Postives = 47/83 (56.63%), Query Frame = 0


Query: 24  DAKIEFTRSMQARLLCDGVTLAFQSKVNFSFSRPSPREVLLELARNRNKIPLPRSIGGPG 83
           DAKI  + + +A +  D V LA Q + + SF+ P PR+ LL++AR RN+ PLP      G
Sbjct: 53  DAKIYSSHAKKATVDADDVRLAIQCRADQSFTSPPPRDFLLDIARQRNQTPLPLIKPYSG 112

Query: 84  IAIPPNQDTLLSQLSTGKSNQSK 107
             +PP++  L +     KS Q K
Sbjct: 113 PRLPPDRYCLTAPNYRLKSLQKK 135

[Close]

BLAST of Carg13936 vs. Swiss-Prot
Match: sp|Q8VI33|TAF9_MOUSE (Transcription initiation factor TFIID subunit 9 OS=Mus musculus OX=10090 GN=Taf9 PE=1 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 1.0e-06
Identity = 32/83 (38.55%), Postives = 47/83 (56.63%), Query Frame = 0


Query: 24  DAKIEFTRSMQARLLCDGVTLAFQSKVNFSFSRPSPREVLLELARNRNKIPLPRSIGGPG 83
           DAKI  + + +A +  D V LA Q + + SF+ P PR+ LL++AR RN+ PLP      G
Sbjct: 53  DAKIYSSHAKKATVDADDVRLAIQCRADQSFTSPPPRDFLLDIARQRNQTPLPLIKPYSG 112

Query: 84  IAIPPNQDTLLSQLSTGKSNQSK 107
             +PP++  L +     KS Q K
Sbjct: 113 PRLPPDRYCLTAPNYRLKSLQKK 135

[Close]

BLAST of Carg13936 vs. TrEMBL
Match: tr|A0A1S3CGN5|A0A1S3CGN5_CUCME (transcription initiation factor TFIID subunit 9 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103500691 PE=4 SV=1)

HSP 1 Score: 109.4 bits (272), Expect = 5.4e-21
Identity = 54/76 (71.05%), Postives = 63/76 (82.89%), Query Frame = 0


Query: 20  DLPRDAKIEFTRSMQARLLCDGVTLAFQSKVNFSFSRPSPREVLLELARNRNKIPLPRSI 79
           D+  DA++    + +A + CD V LA QSKVNFSFS+P PREVLLELARNRNKIPLPRSI
Sbjct: 45  DVLTDAQVYSEHAGKAAIDCDDVKLAIQSKVNFSFSQPPPREVLLELARNRNKIPLPRSI 104

Query: 80  GGPGIAIPPNQDTLLS 96
           GGPGIA+PP+QDTLLS
Sbjct: 105 GGPGIALPPDQDTLLS 120

[Close]

BLAST of Carg13936 vs. TrEMBL
Match: tr|A0A1S4E4D8|A0A1S4E4D8_CUCME (transcription initiation factor TFIID subunit 9 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103500691 PE=4 SV=1)

HSP 1 Score: 109.4 bits (272), Expect = 5.4e-21
Identity = 54/76 (71.05%), Postives = 63/76 (82.89%), Query Frame = 0


Query: 20  DLPRDAKIEFTRSMQARLLCDGVTLAFQSKVNFSFSRPSPREVLLELARNRNKIPLPRSI 79
           D+  DA++    + +A + CD V LA QSKVNFSFS+P PREVLLELARNRNKIPLPRSI
Sbjct: 64  DVLTDAQVYSEHAGKAAIDCDDVKLAIQSKVNFSFSQPPPREVLLELARNRNKIPLPRSI 123

Query: 80  GGPGIAIPPNQDTLLS 96
           GGPGIA+PP+QDTLLS
Sbjct: 124 GGPGIALPPDQDTLLS 139

[Close]

BLAST of Carg13936 vs. TrEMBL
Match: tr|A0A0A0KAU5|A0A0A0KAU5_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G449470 PE=4 SV=1)

HSP 1 Score: 109.4 bits (272), Expect = 5.4e-21
Identity = 54/76 (71.05%), Postives = 63/76 (82.89%), Query Frame = 0


Query: 20  DLPRDAKIEFTRSMQARLLCDGVTLAFQSKVNFSFSRPSPREVLLELARNRNKIPLPRSI 79
           D+  DA++    + +A + CD V LA QSKVNFSFS+P PREVLLELARNRNKIPLPRSI
Sbjct: 45  DVLTDAQVYSEHAGKAAIDCDDVKLAIQSKVNFSFSQPPPREVLLELARNRNKIPLPRSI 104

Query: 80  GGPGIAIPPNQDTLLS 96
           GGPGIA+PP+QDTLLS
Sbjct: 105 GGPGIALPPDQDTLLS 120

[Close]

BLAST of Carg13936 vs. TrEMBL
Match: tr|A0A2P6RYP6|A0A2P6RYP6_ROSCH (Putative transcription factor Hap3/NF-YB family OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr2g0145741 PE=4 SV=1)

HSP 1 Score: 103.2 bits (256), Expect = 3.9e-19
Identity = 49/76 (64.47%), Postives = 61/76 (80.26%), Query Frame = 0


Query: 20  DLPRDAKIEFTRSMQARLLCDGVTLAFQSKVNFSFSRPSPREVLLELARNRNKIPLPRSI 79
           D+  DA++    + +  + CD V LA QSKVNFSFS+P PREVLLELARNRNKIPLP+SI
Sbjct: 45  DVLSDAQVYSDHAGKGAIDCDDVKLAIQSKVNFSFSQPPPREVLLELARNRNKIPLPKSI 104

Query: 80  GGPGIAIPPNQDTLLS 96
            GPG+A+PP+QDTL+S
Sbjct: 105 SGPGVALPPDQDTLIS 120

[Close]

BLAST of Carg13936 vs. TrEMBL
Match: tr|A0A2K2BYZ6|A0A2K2BYZ6_POPTR (Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_001G168300v3 PE=4 SV=1)

HSP 1 Score: 103.2 bits (256), Expect = 3.9e-19
Identity = 60/125 (48.00%), Postives = 71/125 (56.80%), Query Frame = 0


Query: 9   RGSEEITEGEQDLPRDAKI--EFTRSM--------------------------------- 68
           R +E + EGE+D+PRDAKI     +SM                                 
Sbjct: 28  RQAESMAEGEEDMPRDAKIVKSLLKSMGVEDYEPRVVHQFLELWYRYVVDVLTDAQVYSE 87

Query: 69  ---QARLLCDGVTLAFQSKVNFSFSRPSPREVLLELARNRNKIPLPRSIGGPGIAIPPNQ 96
              +  + CD V LA QSKVNFSFS+P PREVLLELARNRNKIPLP+SI GPGI +PP Q
Sbjct: 88  HANKTAIDCDDVKLAIQSKVNFSFSQPPPREVLLELARNRNKIPLPKSIAGPGIPLPPEQ 147

The following BLAST results are available for this feature:

BLAST of Carg13936 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022953465.1	5.1e-23	53.54	transcription initiation factor TFIID subunit 9 [Cucurbita moschata]	[more]
XP_022144675.1	4.3e-22	51.18	transcription initiation factor TFIID subunit 9 [Momordica charantia]	[more]
XP_022992393.1	5.7e-22	50.76	transcription initiation factor TFIID subunit 9 [Cucurbita maxima]	[more]
XP_023547956.1	4.8e-21	71.05	transcription initiation factor TFIID subunit 9 [Cucurbita pepo subsp. pepo]	[more]
XP_011659620.1	8.2e-21	71.05	PREDICTED: transcription initiation factor TFIID subunit 9 [Cucumis sativus] >XP...	[more]

BLAST of Carg13936 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G54140.1	9.9e-21	63.89	TATA binding protein associated factor 21kDa subunit	[more]

BLAST of Carg13936 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q9SYH2\|TAF9_ARATH	1.8e-19	63.89	Transcription initiation factor TFIID subunit 9 OS=Arabidopsis thaliana OX=3702 ...	[more]
sp\|Q09869\|TAF9_SCHPO	6.0e-07	34.41	Transcription initiation factor TFIID subunit 9 OS=Schizosaccharomyces pombe (st...	[more]
sp\|Q17QQ4\|TAF9_BOVIN	1.0e-06	38.55	Transcription initiation factor TFIID subunit 9 OS=Bos taurus OX=9913 GN=TAF9 PE...	[more]
sp\|Q16594\|TAF9_HUMAN	1.0e-06	38.55	Transcription initiation factor TFIID subunit 9 OS=Homo sapiens OX=9606 GN=TAF9 ...	[more]
sp\|Q8VI33\|TAF9_MOUSE	1.0e-06	38.55	Transcription initiation factor TFIID subunit 9 OS=Mus musculus OX=10090 GN=Taf9...	[more]

BLAST of Carg13936 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3CGN5\|A0A1S3CGN5_CUCME	5.4e-21	71.05	transcription initiation factor TFIID subunit 9 isoform X2 OS=Cucumis melo OX=36...	[more]
tr\|A0A1S4E4D8\|A0A1S4E4D8_CUCME	5.4e-21	71.05	transcription initiation factor TFIID subunit 9 isoform X1 OS=Cucumis melo OX=36...	[more]
tr\|A0A0A0KAU5\|A0A0A0KAU5_CUCSA	5.4e-21	71.05	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G449470 PE=4 SV=1	[more]
tr\|A0A2P6RYP6\|A0A2P6RYP6_ROSCH	3.9e-19	64.47	Putative transcription factor Hap3/NF-YB family OS=Rosa chinensis OX=74649 GN=Rc...	[more]
tr\|A0A2K2BYZ6\|A0A2K2BYZ6_POPTR	3.9e-19	48.00	Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_001G168300v3 PE=...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Biological Process**
Term	Definition
GO:0006352	DNA-templated transcription, initiation

Vocabulary: **INTERPRO**
Term	Definition
IPR003162	TFIID-31

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006352	DNA-templated transcription, initiation
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg13936-RA	Carg13936-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003162	Transcription initiation factor TAFII31	PFAM	PF02291	TFIID-31kDa	coord: 23..95 e-value: 2.9E-14 score: 53.1
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 89..106
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 77..113
None	No IPR available	PANTHER	PTHR12595:SF6	TRANSCRIPTION INITIATION FACTOR TFIID SUBUNIT 9	coord: 24..96
None	No IPR available	PANTHER	PTHR12595	POS9-ACTIVATING FACTOR FAP7-RELATED	coord: 24..96

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg13936	Cla015546	Watermelon (97103) v1	carwmB0597
Carg13936	Csa7G449470	Cucumber (Chinese Long) v2	carcuB0632
Carg13936	MELO3C024352	Melon (DHL92) v3.5.1	carmeB0604
Carg13936	ClCG09G000990	Watermelon (Charleston Gray)	carwcgB0584
Carg13936	CSPI07G22510	Wild cucumber (PI 183967)	carcpiB0638
Carg13936	Cucsa.360230	Cucumber (Gy14) v1	carcgyB0680
Carg13936	CmaCh08G007980	Cucurbita maxima (Rimu)	carcmaB0842
Carg13936	CmaCh17G006880	Cucurbita maxima (Rimu)	carcmaB0840
Carg13936	CmoCh08G007690	Cucurbita moschata (Rifu)	carcmoB0820
Carg13936	CmoCh17G006650	Cucurbita moschata (Rifu)	carcmoB0818
Carg13936	Lsi02G028980	Bottle gourd (USVL1VR-Ls)	carlsiB546
Carg13936	Cp4.1LG12g09150	Cucurbita pepo (Zucchini)	carcpeB0849
Carg13936	Cp4.1LG17g04690	Cucurbita pepo (Zucchini)	carcpeB0851
Carg13936	CsGy7G020790	Cucumber (Gy14) v2	carcgybB0604
Carg13936	MELO3C024352.2	Melon (DHL92) v3.6.1	carmedB0610
Carg13936	Cla97C09G163020	Watermelon (97103) v2	carwmbB0630
Carg13936	Bhi09G000269	Wax gourd	carwgoB0716

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Carg13936	Carg09430	Silver-seed gourd	carcarB542

The following block(s) are covering this gene:


Gene	Organism	Block
Carg13936	Wax gourd	carwgoB0717
Carg13936	Cucumber (Gy14) v2	carcgybB0599
Carg13936	Silver-seed gourd	carcarB105
Carg13936	Silver-seed gourd	carcarB541
Carg13936	Cucurbita maxima (Rimu)	carcmaB0838
Carg13936	Cucurbita moschata (Rifu)	carcmoB0816
Carg13936	Cucurbita pepo (Zucchini)	carcpeB0852
Carg13936	Cucurbita pepo (Zucchini)	carcpeB0854
Carg13936	Wild cucumber (PI 183967)	carcpiB0633
Carg13936	Cucumber (Chinese Long) v2	carcuB0627
Carg13936	Cucumber (Chinese Long) v3	carcucB0634
Carg13936	Cucumber (Chinese Long) v3	carcucB0639
Carg13936	Bottle gourd (USVL1VR-Ls)	carlsiB547
Carg13936	Melon (DHL92) v3.5.1	carmeB0605
Carg13936	Melon (DHL92) v3.6.1	carmedB0611
Carg13936	Watermelon (Charleston Gray)	carwcgB0585
Carg13936	Watermelon (97103) v1	carwmB0598
Carg13936	Watermelon (97103) v2	carwmbB0626