Bhi09G000269 (gene) Wax gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Bhi09G000269
Type	gene
Organism	Benincasa hispida (Wax gourd)
Description	transcription initiation factor TFIID subunit 9
Location	chr9 : 6842396 .. 6843288 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCTGAGGGCGACGAGGAGCTACCGAGGGATGCAAAGATTGTGAAAACACTTTTGAAATCGATGGGAGTCGAAGATTATGAACCACGAGTTATACATCAGTTTCTTGAGCTGTGGTATCGTTATGTCGTCGACGTACTAACGGATGCACAAGTATATTCGGAGCATGCAGGCAAGGCTGCCATCGATTGTGATGATGTGAAGCTTGCTATCCAATCCAAAGTTAATTTCAGCTTCTCACAACCTCCTCCAAGAGAGGTAACATGGCTTCGTAGTCCAAATTAGATGTGATTTCTCTGTAGATAGAATGTTTACTGATAGGCAGTCTTTTGAAATGTGAAGCATTTGAGTAATATGGCATTTCTGGATCACTTTACACTGTATCATAGAATTGAATCATTGTCTTGTTAACGACCTTACTTGAACGGGATCTATTCTTTAGGTTGTACAATTGTGTCCTTGAGTTCTAAGAAATATGTAGCCCGGAAGAAAGAGGCTTAGAGGGGGGTATATACTTATGGTATCTTATAGACTTACGATCATATTGAGGGATTTTTCTTGCTATCTTCTCTCTCATTGGAGGAGAAGTGTTTAACCATGACTTCCATTACTGTCAGGTTCTTCTAGAGTTGGCCAGAAGCAGGAATAAGATTCCATTGCCAAGATTGATTGGCGGGCCTGGTATCGCTCTTCCACCTGATCAAGACACGTTGCTCAGTCCCAACTATCAACTCGCAATCCCAAAGAAGCAACCAGTCGAAACCATGGAGGAAACAGAGGAGGATGAAGGCGACCATGCAGTTCCATCCCAAGAACCTGGCTCAGAAGTACCTCAACAACATACCCCACAGAGAGTATCTTTCCCATTGGCAAAACGTCCAAAAATAACATAG

mRNA sequence

ATGTCTGAGGGCGACGAGGAGCTACCGAGGGATGCAAAGATTGTGAAAACACTTTTGAAATCGATGGGAGTCGAAGATTATGAACCACGAGTTATACATCAGTTTCTTGAGCTGTGGTATCGTTATGTCGTCGACGTACTAACGGATGCACAAGTATATTCGGAGCATGCAGGCAAGGCTGCCATCGATTGTGATGATGTGAAGCTTGCTATCCAATCCAAAGTTAATTTCAGCTTCTCACAACCTCCTCCAAGAGAGGTTCTTCTAGAGTTGGCCAGAAGCAGGAATAAGATTCCATTGCCAAGATTGATTGGCGGGCCTGGTATCGCTCTTCCACCTGATCAAGACACGTTGCTCAGTCCCAACTATCAACTCGCAATCCCAAAGAAGCAACCAGTCGAAACCATGGAGGAAACAGAGGAGGATGAAGGCGACCATGCAGTTCCATCCCAAGAACCTGGCTCAGAAGTACCTCAACAACATACCCCACAGAGAGTATCTTTCCCATTGGCAAAACGTCCAAAAATAACATAG

Coding sequence (CDS)

ATGTCTGAGGGCGACGAGGAGCTACCGAGGGATGCAAAGATTGTGAAAACACTTTTGAAATCGATGGGAGTCGAAGATTATGAACCACGAGTTATACATCAGTTTCTTGAGCTGTGGTATCGTTATGTCGTCGACGTACTAACGGATGCACAAGTATATTCGGAGCATGCAGGCAAGGCTGCCATCGATTGTGATGATGTGAAGCTTGCTATCCAATCCAAAGTTAATTTCAGCTTCTCACAACCTCCTCCAAGAGAGGTTCTTCTAGAGTTGGCCAGAAGCAGGAATAAGATTCCATTGCCAAGATTGATTGGCGGGCCTGGTATCGCTCTTCCACCTGATCAAGACACGTTGCTCAGTCCCAACTATCAACTCGCAATCCCAAAGAAGCAACCAGTCGAAACCATGGAGGAAACAGAGGAGGATGAAGGCGACCATGCAGTTCCATCCCAAGAACCTGGCTCAGAAGTACCTCAACAACATACCCCACAGAGAGTATCTTTCCCATTGGCAAAACGTCCAAAAATAACATAG

Protein sequence

MSEGDEELPRDAKIVKTLLKSMGVEDYEPRVIHQFLELWYRYVVDVLTDAQVYSEHAGKAAIDCDDVKLAIQSKVNFSFSQPPPREVLLELARSRNKIPLPRLIGGPGIALPPDQDTLLSPNYQLAIPKKQPVETMEETEEDEGDHAVPSQEPGSEVPQQHTPQRVSFPLAKRPKIT

Homology

[Close]

BLAST of Bhi09G000269 vs. Swiss-Prot
Match: sp|Q9SYH2|TAF9_ARATH (Transcription initiation factor TFIID subunit 9 OS=Arabidopsis thaliana OX=3702 GN=TAF9 PE=1 SV=1)

HSP 1 Score: 237.3 bits (604), Expect = 1.3e-61
Identity = 126/181 (69.61%), Postives = 138/181 (76.24%), Query Frame = 0


Query: 3   EGDEELPRDAKIVKTLLKSMGVEDYEPRVIHQFLELWYRYVVDVLTDAQVYSEHAGKAAI 62
           EG+E++PRDAKIVK+LLKSMGVEDYEPRVIHQFLELWYRYVV+VLTDAQVYSEHA K  I
Sbjct: 4   EGEEDVPRDAKIVKSLLKSMGVEDYEPRVIHQFLELWYRYVVEVLTDAQVYSEHASKPNI 63

Query: 63  DCDDVKLAIQSKVNFSFSQPPPREVLLELARSRNKIPLPRLIGGPGIALPPDQDTLLSPN 122
           DCDDVKLAIQSKVNFSFSQPPPREVLLELA SRNKIPLP+ I GPG+ LPP+QDTLLSPN
Sbjct: 64  DCDDVKLAIQSKVNFSFSQPPPREVLLELAASRNKIPLPKSIAGPGVPLPPEQDTLLSPN 123

Query: 123 YQLAIPKKQ--------PVETMEETEEDEGDHAVPSQEPGSEVPQQHTPQRVSFPLAKRP 176
           YQL IPKK                                 ++P Q TPQRVSFPL++RP
Sbjct: 124 YQLVIPKKSVSTEXXXXXXXXXXXXXXXXXXXXXXXXXXXXDLPSQ-TPQRVSFPLSRRP 183

[Close]

BLAST of Bhi09G000269 vs. Swiss-Prot
Match: sp|Q8VI33|TAF9_MOUSE (Transcription initiation factor TFIID subunit 9 OS=Mus musculus OX=10090 GN=Taf9 PE=1 SV=1)

HSP 1 Score: 133.7 bits (335), Expect = 2.1e-30
Identity = 71/159 (44.65%), Postives = 101/159 (63.52%), Query Frame = 0


Query: 6   EELPRDAKIVKTLLKSMGVEDYEPRVIHQFLELWYRYVVDVLTDAQVYSEHAGKAAIDCD 65
           + +P+DA+++  +LK MG+ +YEPRVI+Q LE  +RYV  +L DA++YS HA KA +D D
Sbjct: 10  KSMPKDAQMMAQILKDMGITEYEPRVINQMLEFAFRYVTTILDDAKIYSSHAKKATVDAD 69

Query: 66  DVKLAIQSKVNFSFSQPPPREVLLELARSRNKIPLPRLIGGPGIALPPDQDTLLSPNYQL 125
           DV+LAIQ + + SF+ PPPR+ LL++AR RN+ PLP +    G  LPPD+  L +PNY+L
Sbjct: 70  DVRLAIQCRADQSFTSPPPRDFLLDIARQRNQTPLPLIKPYSGPRLPPDRYCLTAPNYRL 129

Query: 126 -AIPKKQPVETMEETEEDEGDHAVPSQEPGSEVPQQHTP 164
            ++ KK P           G   VP    GS   +  TP
Sbjct: 130 KSLQKKAPAPA--------GRITVPRLSVGSVSSRPSTP 160

[Close]

BLAST of Bhi09G000269 vs. Swiss-Prot
Match: sp|Q62880|TAF9B_RAT (Transcription initiation factor TFIID subunit 9B OS=Rattus norvegicus OX=10116 GN=Taf9b PE=2 SV=2)

HSP 1 Score: 133.3 bits (334), Expect = 2.7e-30
Identity = 64/125 (51.20%), Postives = 89/125 (71.20%), Query Frame = 0


Query: 9   PRDAKIVKTLLKSMGVEDYEPRVIHQFLELWYRYVVDVLTDAQVYSEHAGKAAIDCDDVK 68
           PRDA ++  +LK MG+ DYEPRVI+Q LE  +RYV  +L DA++YS HA K  +D DDV+
Sbjct: 13  PRDALVMAQILKDMGITDYEPRVINQMLEFAFRYVTTILDDAKIYSSHAKKPTVDADDVR 72

Query: 69  LAIQSKVNFSFSQPPPREVLLELARSRNKIPLPRLIGGPGIALPPDQDTLLSPNYQL-AI 128
           LAIQ + + SF+ PPPR+ LL++AR +N+ PLP +    G  LPPD+  L +PNY+L ++
Sbjct: 73  LAIQCRADQSFTSPPPRDFLLDIARQKNQTPLPLIKPYAGPRLPPDRYCLTAPNYRLKSL 132

Query: 129 PKKQP 133
            KK P
Sbjct: 133 VKKGP 137

[Close]

BLAST of Bhi09G000269 vs. Swiss-Prot
Match: sp|Q6NZA9|TAF9B_MOUSE (Transcription initiation factor TFIID subunit 9B OS=Mus musculus OX=10090 GN=Taf9b PE=1 SV=2)

HSP 1 Score: 131.7 bits (330), Expect = 7.9e-30
Identity = 63/125 (50.40%), Postives = 89/125 (71.20%), Query Frame = 0


Query: 9   PRDAKIVKTLLKSMGVEDYEPRVIHQFLELWYRYVVDVLTDAQVYSEHAGKAAIDCDDVK 68
           PRDA ++  +LK MG+ +YEPRVI+Q LE  +RYV  +L DA++YS HA K  +D DDV+
Sbjct: 13  PRDALVMAQILKDMGITEYEPRVINQMLEFAFRYVTTILDDAKIYSSHAKKPTVDADDVR 72

Query: 69  LAIQSKVNFSFSQPPPREVLLELARSRNKIPLPRLIGGPGIALPPDQDTLLSPNYQL-AI 128
           LAIQ + + SF+ PPPR+ LL++AR +N+ PLP +    G  LPPD+  L +PNY+L ++
Sbjct: 73  LAIQCRADQSFTSPPPRDFLLDIARQKNQTPLPLIKPYAGPRLPPDRYCLTAPNYRLKSL 132

Query: 129 PKKQP 133
            KK P
Sbjct: 133 VKKGP 137

[Close]

BLAST of Bhi09G000269 vs. Swiss-Prot
Match: sp|Q17QQ4|TAF9_BOVIN (Transcription initiation factor TFIID subunit 9 OS=Bos taurus OX=9913 GN=TAF9 PE=2 SV=1)

HSP 1 Score: 131.7 bits (330), Expect = 7.9e-30
Identity = 69/158 (43.67%), Postives = 99/158 (62.66%), Query Frame = 0


Query: 6   EELPRDAKIVKTLLKSMGVEDYEPRVIHQFLELWYRYVVDVLTDAQVYSEHAGKAAIDCD 65
           + +P+DA+++  +LK MG+ +YEPRVI+Q LE  +RYV  +L DA++YS HA KA +D D
Sbjct: 10  KSMPKDAQMMAQILKDMGITEYEPRVINQMLEFAFRYVTTILDDAKIYSSHAKKATVDAD 69

Query: 66  DVKLAIQSKVNFSFSQPPPREVLLELARSRNKIPLPRLIGGPGIALPPDQDTLLSPNYQL 125
           DV+LAIQ + + SF+ PPPR+ LL++AR RN+ PLP +    G  LPPD+  L +PNY+L
Sbjct: 70  DVRLAIQCRADQSFTSPPPRDFLLDIARQRNQTPLPLIKPYSGPRLPPDRYCLTAPNYRL 129

Query: 126 AIPKKQPVETMEETEEDEGDHAVPSQEPGSEVPQQHTP 164
              +K       +     G   VP    GS   +  TP
Sbjct: 130 KSLQK-------KASASAGRITVPRLSVGSVTSRPSTP 160

[Close]

BLAST of Bhi09G000269 vs. TAIR10
Match: AT1G54140.1 (TATA binding protein associated factor 21kDa subunit)

HSP 1 Score: 237.3 bits (604), Expect = 7.4e-63
Identity = 126/181 (69.61%), Postives = 138/181 (76.24%), Query Frame = 0


Query: 3   EGDEELPRDAKIVKTLLKSMGVEDYEPRVIHQFLELWYRYVVDVLTDAQVYSEHAGKAAI 62
           EG+E++PRDAKIVK+LLKSMGVEDYEPRVIHQFLELWYRYVV+VLTDAQVYSEHA K  I
Sbjct: 4   EGEEDVPRDAKIVKSLLKSMGVEDYEPRVIHQFLELWYRYVVEVLTDAQVYSEHASKPNI 63

Query: 63  DCDDVKLAIQSKVNFSFSQPPPREVLLELARSRNKIPLPRLIGGPGIALPPDQDTLLSPN 122
           DCDDVKLAIQSKVNFSFSQPPPREVLLELA SRNKIPLP+ I GPG+ LPP+QDTLLSPN
Sbjct: 64  DCDDVKLAIQSKVNFSFSQPPPREVLLELAASRNKIPLPKSIAGPGVPLPPEQDTLLSPN 123

Query: 123 YQLAIPKKQ--------PVETMEETEEDEGDHAVPSQEPGSEVPQQHTPQRVSFPLAKRP 176
           YQL IPKK                                 ++P Q TPQRVSFPL++RP
Sbjct: 124 YQLVIPKKSVSTEXXXXXXXXXXXXXXXXXXXXXXXXXXXXDLPSQ-TPQRVSFPLSRRP 183

[Close]

BLAST of Bhi09G000269 vs. TrEMBL
Match: tr|A0A1S3CGN5|A0A1S3CGN5_CUCME (transcription initiation factor TFIID subunit 9 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103500691 PE=4 SV=1)

HSP 1 Score: 326.2 bits (835), Expect = 4.4e-86
Identity = 168/179 (93.85%), Postives = 171/179 (95.53%), Query Frame = 0


Query: 1   MSEGDEELPRDAKIVKTLLKSMGVEDYEPRVIHQFLELWYRYVVDVLTDAQVYSEHAGKA 60
           MS+GDEELPRDAKIVKTLLKSMGVEDYEPRVIHQFLELWYRYVVDVLTDAQVYSEHAGKA
Sbjct: 1   MSDGDEELPRDAKIVKTLLKSMGVEDYEPRVIHQFLELWYRYVVDVLTDAQVYSEHAGKA 60

Query: 61  AIDCDDVKLAIQSKVNFSFSQPPPREVLLELARSRNKIPLPRLIGGPGIALPPDQDTLLS 120
           AIDCDDVKLAIQSKVNFSFSQPPPREVLLELAR+RNKIPLPR IGGPGIALPPDQDTLLS
Sbjct: 61  AIDCDDVKLAIQSKVNFSFSQPPPREVLLELARNRNKIPLPRSIGGPGIALPPDQDTLLS 120

Query: 121 PNYQLAIPKKQPVETMEETEEDEGDH-AVPSQEP-GSEVPQQHTPQRVSFPLAKRPKIT 178
           PNYQLAIPKKQ VETMEETEEDEGD   VPSQEP  SEVPQQH PQRVSFPLAKRPK+T
Sbjct: 121 PNYQLAIPKKQAVETMEETEEDEGDDTVVPSQEPSSSEVPQQHAPQRVSFPLAKRPKLT 179

[Close]

BLAST of Bhi09G000269 vs. TrEMBL
Match: tr|A0A1S4E4D8|A0A1S4E4D8_CUCME (transcription initiation factor TFIID subunit 9 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103500691 PE=4 SV=1)

HSP 1 Score: 326.2 bits (835), Expect = 4.4e-86
Identity = 168/179 (93.85%), Postives = 171/179 (95.53%), Query Frame = 0


Query: 1   MSEGDEELPRDAKIVKTLLKSMGVEDYEPRVIHQFLELWYRYVVDVLTDAQVYSEHAGKA 60
           MS+GDEELPRDAKIVKTLLKSMGVEDYEPRVIHQFLELWYRYVVDVLTDAQVYSEHAGKA
Sbjct: 20  MSDGDEELPRDAKIVKTLLKSMGVEDYEPRVIHQFLELWYRYVVDVLTDAQVYSEHAGKA 79

Query: 61  AIDCDDVKLAIQSKVNFSFSQPPPREVLLELARSRNKIPLPRLIGGPGIALPPDQDTLLS 120
           AIDCDDVKLAIQSKVNFSFSQPPPREVLLELAR+RNKIPLPR IGGPGIALPPDQDTLLS
Sbjct: 80  AIDCDDVKLAIQSKVNFSFSQPPPREVLLELARNRNKIPLPRSIGGPGIALPPDQDTLLS 139

Query: 121 PNYQLAIPKKQPVETMEETEEDEGDH-AVPSQEP-GSEVPQQHTPQRVSFPLAKRPKIT 178
           PNYQLAIPKKQ VETMEETEEDEGD   VPSQEP  SEVPQQH PQRVSFPLAKRPK+T
Sbjct: 140 PNYQLAIPKKQAVETMEETEEDEGDDTVVPSQEPSSSEVPQQHAPQRVSFPLAKRPKLT 198

[Close]

BLAST of Bhi09G000269 vs. TrEMBL
Match: tr|A0A0A0KAU5|A0A0A0KAU5_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G449470 PE=4 SV=1)

HSP 1 Score: 322.0 bits (824), Expect = 8.3e-85
Identity = 168/179 (93.85%), Postives = 169/179 (94.41%), Query Frame = 0


Query: 1   MSEGDEELPRDAKIVKTLLKSMGVEDYEPRVIHQFLELWYRYVVDVLTDAQVYSEHAGKA 60
           MSEGDEELPRDAKIVKTLLKSMGVEDYEPRVIHQFLELWYRYVVDVLTDAQVYSEHAGKA
Sbjct: 1   MSEGDEELPRDAKIVKTLLKSMGVEDYEPRVIHQFLELWYRYVVDVLTDAQVYSEHAGKA 60

Query: 61  AIDCDDVKLAIQSKVNFSFSQPPPREVLLELARSRNKIPLPRLIGGPGIALPPDQDTLLS 120
           AIDCDDVKLAIQSKVNFSFSQPPPREVLLELAR+RNKIPLPR IGGPGIALPPDQDTLLS
Sbjct: 61  AIDCDDVKLAIQSKVNFSFSQPPPREVLLELARNRNKIPLPRSIGGPGIALPPDQDTLLS 120

Query: 121 PNYQLAIPKKQPVETMEETEEDEGDHAV-PSQEP-GSEVPQQHTPQRVSFPLAKRPKIT 178
           PNYQLAIPKKQ VETMEETEEDEGD  V PSQEP  SEVPQQH  QRVSFPLAKR KIT
Sbjct: 121 PNYQLAIPKKQAVETMEETEEDEGDDTVAPSQEPSSSEVPQQHASQRVSFPLAKRSKIT 179

[Close]

BLAST of Bhi09G000269 vs. TrEMBL
Match: tr|A0A2C9UX71|A0A2C9UX71_MANES (Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_11G019600 PE=4 SV=1)

HSP 1 Score: 295.8 bits (756), Expect = 6.4e-77
Identity = 148/176 (84.09%), Postives = 162/176 (92.05%), Query Frame = 0


Query: 1   MSEGDEELPRDAKIVKTLLKSMGVEDYEPRVIHQFLELWYRYVVDVLTDAQVYSEHAGKA 60
           M+EG+E+LPRDAKIVK+LLKSMGVEDYEPRVIHQFLELWYRYVVDVLTDAQVYSEHAGK+
Sbjct: 1   MAEGEEDLPRDAKIVKSLLKSMGVEDYEPRVIHQFLELWYRYVVDVLTDAQVYSEHAGKS 60

Query: 61  AIDCDDVKLAIQSKVNFSFSQPPPREVLLELARSRNKIPLPRLIGGPGIALPPDQDTLLS 120
           AIDCDDVKLAIQSKVNFSFSQPPPREVLLELAR RNKIPLP+ I GPGI LPP+QDTL+S
Sbjct: 61  AIDCDDVKLAIQSKVNFSFSQPPPREVLLELARKRNKIPLPKSITGPGIPLPPEQDTLIS 120

Query: 121 PNYQLAIPKKQPVETMEETEEDEGDHAV-PSQEPGSEVPQQHTPQRVSFPLAKRPK 176
           PNYQLAIPKKQP + +EETEEDE    + PSQEP ++VPQ +TPQRVSFPL KRPK
Sbjct: 121 PNYQLAIPKKQPAQAVEETEEDEESADLNPSQEPKADVPQHNTPQRVSFPLTKRPK 176

[Close]

BLAST of Bhi09G000269 vs. TrEMBL
Match: tr|A0A2C9W4Q6|A0A2C9W4Q6_MANES (Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_04G145400 PE=4 SV=1)

HSP 1 Score: 288.9 bits (738), Expect = 7.8e-75
Identity = 141/176 (80.11%), Postives = 160/176 (90.91%), Query Frame = 0


Query: 1   MSEGDEELPRDAKIVKTLLKSMGVEDYEPRVIHQFLELWYRYVVDVLTDAQVYSEHAGKA 60
           M+EG+E+LPRDAKIVK+LLKSMG+EDYEPRVIHQFLELWYRY VDVLTDAQ+YSEHAGK+
Sbjct: 1   MAEGEEDLPRDAKIVKSLLKSMGIEDYEPRVIHQFLELWYRYAVDVLTDAQIYSEHAGKS 60

Query: 61  AIDCDDVKLAIQSKVNFSFSQPPPREVLLELARSRNKIPLPRLIGGPGIALPPDQDTLLS 120
           A+DCDDVKLAIQSKVNFSFSQPPPREVLLELAR+RNKIPLP+ I GPGI LPP+QD L+S
Sbjct: 61  AVDCDDVKLAIQSKVNFSFSQPPPREVLLELARNRNKIPLPKTIAGPGIPLPPEQDILIS 120

Query: 121 PNYQLAIPKKQPVETMEETEEDEGDHAV-PSQEPGSEVPQQHTPQRVSFPLAKRPK 176
           PNYQLAIP K+P + +EETEEDE    + PSQEP ++VPQ +TPQRVSFPL KRPK
Sbjct: 121 PNYQLAIPNKRPAQAVEETEEDEASADLNPSQEPKADVPQHNTPQRVSFPLNKRPK 176

[Close]

BLAST of Bhi09G000269 vs. NCBI nr
Match: XP_022953465.1 (transcription initiation factor TFIID subunit 9 [Cucurbita moschata])

HSP 1 Score: 329.3 bits (843), Expect = 7.9e-87
Identity = 165/177 (93.22%), Postives = 171/177 (96.61%), Query Frame = 0


Query: 1   MSEGDEELPRDAKIVKTLLKSMGVEDYEPRVIHQFLELWYRYVVDVLTDAQVYSEHAGKA 60
           MSEGDE+LPRDAKIVKTLLKSMGVEDYEPRVIHQFLELWYRYVVDVLTDAQVYSEHAGKA
Sbjct: 41  MSEGDEDLPRDAKIVKTLLKSMGVEDYEPRVIHQFLELWYRYVVDVLTDAQVYSEHAGKA 100

Query: 61  AIDCDDVKLAIQSKVNFSFSQPPPREVLLELARSRNKIPLPRLIGGPGIALPPDQDTLLS 120
           AIDCDDVKLAIQSKVNFSFSQPPPREVLLELAR+RNKIPLPR IGGPGIALPPDQDTLLS
Sbjct: 101 AIDCDDVKLAIQSKVNFSFSQPPPREVLLELARNRNKIPLPRSIGGPGIALPPDQDTLLS 160

Query: 121 PNYQLAIPKKQPVETMEETEEDEGDHAVPSQEPGSEVPQQHTPQRVSFPLAKRPKIT 178
           PNYQLAIP+K+ VE MEETEEDEG  AVPSQEP +EVPQQHTPQRVSFPL+KRPKIT
Sbjct: 161 PNYQLAIPRKRQVEAMEETEEDEGVDAVPSQEPSTEVPQQHTPQRVSFPLSKRPKIT 217

[Close]

BLAST of Bhi09G000269 vs. NCBI nr
Match: XP_023547956.1 (transcription initiation factor TFIID subunit 9 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 327.0 bits (837), Expect = 3.9e-86
Identity = 164/177 (92.66%), Postives = 170/177 (96.05%), Query Frame = 0


Query: 1   MSEGDEELPRDAKIVKTLLKSMGVEDYEPRVIHQFLELWYRYVVDVLTDAQVYSEHAGKA 60
           MSEGDE+LPRDAKIVKTLLKSMGVEDYEPRVIHQFLELWYRYVVDVLTDAQVYSEHA KA
Sbjct: 1   MSEGDEDLPRDAKIVKTLLKSMGVEDYEPRVIHQFLELWYRYVVDVLTDAQVYSEHAAKA 60

Query: 61  AIDCDDVKLAIQSKVNFSFSQPPPREVLLELARSRNKIPLPRLIGGPGIALPPDQDTLLS 120
           AIDCDDVKLAIQSKVNFSFSQPPPREVLLELAR+RNKIPLPR IGGPGIALPPDQDTLLS
Sbjct: 61  AIDCDDVKLAIQSKVNFSFSQPPPREVLLELARNRNKIPLPRSIGGPGIALPPDQDTLLS 120

Query: 121 PNYQLAIPKKQPVETMEETEEDEGDHAVPSQEPGSEVPQQHTPQRVSFPLAKRPKIT 178
           PNYQLAIP+K+ VE MEETEEDEG  AVPSQEP +EVPQQHTPQRVSFPL+KRPKIT
Sbjct: 121 PNYQLAIPRKRQVEAMEETEEDEGVDAVPSQEPSTEVPQQHTPQRVSFPLSKRPKIT 177

[Close]

BLAST of Bhi09G000269 vs. NCBI nr
Match: XP_008462302.1 (PREDICTED: transcription initiation factor TFIID subunit 9 isoform X2 [Cucumis melo] >XP_008462303.1 PREDICTED: transcription initiation factor TFIID subunit 9 isoform X2 [Cucumis melo])

HSP 1 Score: 326.2 bits (835), Expect = 6.7e-86
Identity = 168/179 (93.85%), Postives = 171/179 (95.53%), Query Frame = 0


Query: 1   MSEGDEELPRDAKIVKTLLKSMGVEDYEPRVIHQFLELWYRYVVDVLTDAQVYSEHAGKA 60
           MS+GDEELPRDAKIVKTLLKSMGVEDYEPRVIHQFLELWYRYVVDVLTDAQVYSEHAGKA
Sbjct: 1   MSDGDEELPRDAKIVKTLLKSMGVEDYEPRVIHQFLELWYRYVVDVLTDAQVYSEHAGKA 60

Query: 61  AIDCDDVKLAIQSKVNFSFSQPPPREVLLELARSRNKIPLPRLIGGPGIALPPDQDTLLS 120
           AIDCDDVKLAIQSKVNFSFSQPPPREVLLELAR+RNKIPLPR IGGPGIALPPDQDTLLS
Sbjct: 61  AIDCDDVKLAIQSKVNFSFSQPPPREVLLELARNRNKIPLPRSIGGPGIALPPDQDTLLS 120

Query: 121 PNYQLAIPKKQPVETMEETEEDEGDH-AVPSQEP-GSEVPQQHTPQRVSFPLAKRPKIT 178
           PNYQLAIPKKQ VETMEETEEDEGD   VPSQEP  SEVPQQH PQRVSFPLAKRPK+T
Sbjct: 121 PNYQLAIPKKQAVETMEETEEDEGDDTVVPSQEPSSSEVPQQHAPQRVSFPLAKRPKLT 179

[Close]

BLAST of Bhi09G000269 vs. NCBI nr
Match: XP_016902840.1 (PREDICTED: transcription initiation factor TFIID subunit 9 isoform X1 [Cucumis melo])

HSP 1 Score: 326.2 bits (835), Expect = 6.7e-86
Identity = 168/179 (93.85%), Postives = 171/179 (95.53%), Query Frame = 0


Query: 1   MSEGDEELPRDAKIVKTLLKSMGVEDYEPRVIHQFLELWYRYVVDVLTDAQVYSEHAGKA 60
           MS+GDEELPRDAKIVKTLLKSMGVEDYEPRVIHQFLELWYRYVVDVLTDAQVYSEHAGKA
Sbjct: 20  MSDGDEELPRDAKIVKTLLKSMGVEDYEPRVIHQFLELWYRYVVDVLTDAQVYSEHAGKA 79

Query: 61  AIDCDDVKLAIQSKVNFSFSQPPPREVLLELARSRNKIPLPRLIGGPGIALPPDQDTLLS 120
           AIDCDDVKLAIQSKVNFSFSQPPPREVLLELAR+RNKIPLPR IGGPGIALPPDQDTLLS
Sbjct: 80  AIDCDDVKLAIQSKVNFSFSQPPPREVLLELARNRNKIPLPRSIGGPGIALPPDQDTLLS 139

Query: 121 PNYQLAIPKKQPVETMEETEEDEGDH-AVPSQEP-GSEVPQQHTPQRVSFPLAKRPKIT 178
           PNYQLAIPKKQ VETMEETEEDEGD   VPSQEP  SEVPQQH PQRVSFPLAKRPK+T
Sbjct: 140 PNYQLAIPKKQAVETMEETEEDEGDDTVVPSQEPSSSEVPQQHAPQRVSFPLAKRPKLT 198

[Close]

BLAST of Bhi09G000269 vs. NCBI nr
Match: XP_022992393.1 (transcription initiation factor TFIID subunit 9 [Cucurbita maxima])

HSP 1 Score: 323.9 bits (829), Expect = 3.3e-85
Identity = 163/177 (92.09%), Postives = 169/177 (95.48%), Query Frame = 0


Query: 1   MSEGDEELPRDAKIVKTLLKSMGVEDYEPRVIHQFLELWYRYVVDVLTDAQVYSEHAGKA 60
           MSEGDE+LPRDA+IVKTLLKSMGVEDYEPRVIHQFLELWYRYVVDVLTDAQVYSEHAGKA
Sbjct: 37  MSEGDEDLPRDARIVKTLLKSMGVEDYEPRVIHQFLELWYRYVVDVLTDAQVYSEHAGKA 96

Query: 61  AIDCDDVKLAIQSKVNFSFSQPPPREVLLELARSRNKIPLPRLIGGPGIALPPDQDTLLS 120
           AIDCDDVKLAIQSKVNFSFSQPPPREVLLELAR+RNKIPLPR IGGPGIALPPD DTLLS
Sbjct: 97  AIDCDDVKLAIQSKVNFSFSQPPPREVLLELARNRNKIPLPRSIGGPGIALPPDIDTLLS 156

Query: 121 PNYQLAIPKKQPVETMEETEEDEGDHAVPSQEPGSEVPQQHTPQRVSFPLAKRPKIT 178
           PNYQLAIPKK+PVE MEETEEDEG   VPSQE  +EVPQQHTPQRVSFPL+KRPKIT
Sbjct: 157 PNYQLAIPKKRPVEAMEETEEDEGVDTVPSQELSTEVPQQHTPQRVSFPLSKRPKIT 213

The following BLAST results are available for this feature:

BLAST of Bhi09G000269 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q9SYH2\|TAF9_ARATH	1.3e-61	69.61	Transcription initiation factor TFIID subunit 9 OS=Arabidopsis thaliana OX=3702 ...	[more]
sp\|Q8VI33\|TAF9_MOUSE	2.1e-30	44.65	Transcription initiation factor TFIID subunit 9 OS=Mus musculus OX=10090 GN=Taf9...	[more]
sp\|Q62880\|TAF9B_RAT	2.7e-30	51.20	Transcription initiation factor TFIID subunit 9B OS=Rattus norvegicus OX=10116 G...	[more]
sp\|Q6NZA9\|TAF9B_MOUSE	7.9e-30	50.40	Transcription initiation factor TFIID subunit 9B OS=Mus musculus OX=10090 GN=Taf...	[more]
sp\|Q17QQ4\|TAF9_BOVIN	7.9e-30	43.67	Transcription initiation factor TFIID subunit 9 OS=Bos taurus OX=9913 GN=TAF9 PE...	[more]

BLAST of Bhi09G000269 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G54140.1	7.4e-63	69.61	TATA binding protein associated factor 21kDa subunit	[more]

BLAST of Bhi09G000269 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3CGN5\|A0A1S3CGN5_CUCME	4.4e-86	93.85	transcription initiation factor TFIID subunit 9 isoform X2 OS=Cucumis melo OX=36...	[more]
tr\|A0A1S4E4D8\|A0A1S4E4D8_CUCME	4.4e-86	93.85	transcription initiation factor TFIID subunit 9 isoform X1 OS=Cucumis melo OX=36...	[more]
tr\|A0A0A0KAU5\|A0A0A0KAU5_CUCSA	8.3e-85	93.85	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G449470 PE=4 SV=1	[more]
tr\|A0A2C9UX71\|A0A2C9UX71_MANES	6.4e-77	84.09	Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_11G019600 PE=4 SV=...	[more]
tr\|A0A2C9W4Q6\|A0A2C9W4Q6_MANES	7.8e-75	80.11	Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_04G145400 PE=4 SV=...	[more]

BLAST of Bhi09G000269 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022953465.1	7.9e-87	93.22	transcription initiation factor TFIID subunit 9 [Cucurbita moschata]	[more]
XP_023547956.1	3.9e-86	92.66	transcription initiation factor TFIID subunit 9 [Cucurbita pepo subsp. pepo]	[more]
XP_008462302.1	6.7e-86	93.85	PREDICTED: transcription initiation factor TFIID subunit 9 isoform X2 [Cucumis m...	[more]
XP_016902840.1	6.7e-86	93.85	PREDICTED: transcription initiation factor TFIID subunit 9 isoform X1 [Cucumis m...	[more]
XP_022992393.1	3.3e-85	92.09	transcription initiation factor TFIID subunit 9 [Cucurbita maxima]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0046982	protein heterodimerization activity

Vocabulary: **Biological Process**
Term	Definition
GO:0006352	DNA-templated transcription, initiation

Vocabulary: **INTERPRO**
Term	Definition
IPR009072	Histone-fold
IPR003162	TFIID-31

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006352	DNA-templated transcription, initiation
biological_process	GO:0000394	RNA splicing, via endonucleolytic cleavage and ligation
biological_process	GO:0045944	positive regulation of transcription from RNA polymerase II promoter
biological_process	GO:0006413	translational initiation
biological_process	GO:0043966	histone H3 acetylation
biological_process	GO:0006366	transcription from RNA polymerase II promoter
biological_process	GO:0009560	embryo sac egg cell differentiation
biological_process	GO:0006446	regulation of translational initiation
cellular_component	GO:0000124	SAGA complex
cellular_component	GO:0005669	transcription factor TFIID complex
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0005840	ribosome
molecular_function	GO:0005488	binding
molecular_function	GO:0044212	transcription regulatory region DNA binding
molecular_function	GO:0003743	translation initiation factor activity
molecular_function	GO:0008134	transcription factor binding
molecular_function	GO:0046982	protein heterodimerization activity
molecular_function	GO:0004402	histone acetyltransferase activity
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Bhi09M000269	Bhi09M000269	mRNA

InterPro

Analysis Name: InterPro Annotations of wax gourd
Date Performed: 2019-11-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003162	Transcription initiation factor TAFII31	PFAM	PF02291	TFIID-31kDa	coord: 6..125 e-value: 3.4E-47 score: 159.4
IPR003162	Transcription initiation factor TAFII31	CDD	cd07979	TAF9	coord: 9..125 e-value: 1.02248E-64 score: 195.913
IPR009072	Histone-fold	GENE3D	G3DSA:1.10.20.10		coord: 9..76 e-value: 7.0E-32 score: 111.4
IPR009072	Histone-fold	SUPERFAMILY	SSF47113	Histone-fold	coord: 9..73
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 128..177
None	No IPR available	PANTHER	PTHR12595	POS9-ACTIVATING FACTOR FAP7-RELATED	coord: 6..161
None	No IPR available	PANTHER	PTHR12595:SF6	TRANSCRIPTION INITIATION FACTOR TFIID SUBUNIT 9	coord: 6..161

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Bhi09G000269	Csa7G449470	Cucumber (Chinese Long) v2	cuwgoB690
Bhi09G000269	MELO3C024352	Melon (DHL92) v3.5.1	mewgoB239
Bhi09G000269	ClCG09G000990	Watermelon (Charleston Gray)	wcgwgoB068
Bhi09G000269	CSPI07G22510	Wild cucumber (PI 183967)	cpiwgoB702
Bhi09G000269	Cucsa.360230	Cucumber (Gy14) v1	cgywgoB719
Bhi09G000269	CmaCh08G007980	Cucurbita maxima (Rimu)	cmawgoB1129
Bhi09G000269	CmaCh17G006880	Cucurbita maxima (Rimu)	cmawgoB0488
Bhi09G000269	CmoCh08G007690	Cucurbita moschata (Rifu)	cmowgoB1127
Bhi09G000269	CmoCh17G006650	Cucurbita moschata (Rifu)	cmowgoB0487
Bhi09G000269	Lsi02G028980	Bottle gourd (USVL1VR-Ls)	lsiwgoB270
Bhi09G000269	Cp4.1LG17g04690	Cucurbita pepo (Zucchini)	cpewgoB0415
Bhi09G000269	Cp4.1LG12g09150	Cucurbita pepo (Zucchini)	cpewgoB0202
Bhi09G000269	CsGy7G020790	Cucumber (Gy14) v2	cgybwgoB659
Bhi09G000269	MELO3C024352.2	Melon (DHL92) v3.6.1	medwgoB240
Bhi09G000269	Carg13936	Silver-seed gourd	carwgoB0716
Bhi09G000269	Carg09430	Silver-seed gourd	carwgoB1202

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:

None