Carg13860 (gene) Silver-seed gourd

Overview
NameCarg13860
Typegene
OrganismCucurbita argyrosperma (Silver-seed gourd)
DescriptionLong-chain-fatty-acid CoA ligase, putative
LocationCucurbita_argyrosperma_scaffold_042 : 299979 .. 300961 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGCGTGGCGGTTCCTTTTACTCATGGATTTCTACCATTTCTGGTCATTCGCTCCAAAGAAGCCCTGATTTTGGAATCTCTTGCCAATCGAAGGTAATTTTTGAAATCTGTTTTGAATGTCATTATGTTATGATTTAGAGATAAAATGAATGAATTATAATGTAGAGAGAGAGAGGTTGGAGTTATGGAGGTATTGTCCAATGCTAGAAAGTTGTTTGGTGGAAGGAATTAGTTCCTGATATTTGGAGGTTTTCAGCGGAGAGGTATGGCGATCGGGTAGCGTTGCTGGATCCATACCATAATCCTGCTTCCAAGATTACTTATAAACAGGTATCCATACCATAATCTTGTTAGTATTCCTCGTTTGCTTCTTCAGCATAGTCAGTGATTATGTTTTTGCTTCATTTTAGCAACGAAACACCATCTTGTTTCTTATATTACTTACTTTTCTCTTCTTTTTTTCTTCATAAATTTAAATTTGCAGCTAGAACAAAGTATCTTGAATTTCTGTGAAGGTCTTAGGGCCATTGGAATAAAGCCAGATGAAAAGATTGCACTCTTTTCTGATAATTCATGCCGATGGCTTGTTGCCGATCAAGGTATGCGTTGATTGTATAAAATATTGTATTTCATTTGGTTATATTTTATTAGTTTGGGTTCAGGTATTATGAGTATGGGAGAAATTAATGTTGTTAGAGGTTCAAGATCATCAAGTGAGGAGTTGTTGCAAATATACAATTGAAAGGTTTCTTAAATTGCTTCATAGGTTTTAACATAAACTATGTTTTGGTTTTAAATTTAAACTTTCACTGTGTAGCATTAGTTGTAGACAACCCTGAATTGTTCAATCGAATCATTGAAACATTCCGTTCGAAGGCATCCATGAGATGTATCATTCTTCTATGGGGCGAAAACTCAAGCCTGGCAGCTGAGGGACTGGACGGTATTGGACATCATGGATATGGGATGAGAGAGTCGTAA

mRNA sequence

ATGGGCGTGGCGGTTCCTTTTACTCATGGATTTCTACCATTTCTGGTCATTCGCTCCAAAGAAGCCCTGATTTTGGAATCTCTTGCCAATCGAAGAGAGAGAGAGGTTGGAGTTATGGAGGAATTAGTTCCTGATATTTGGAGGTTTTCAGCGGAGAGGTATGGCGATCGGGTAGCGTTGCTGGATCCATACCATAATCCTGCTTCCAAGATTACTTATAAACAGCTAGAACAAAGTATCTTGAATTTCTGTGAAGGTCTTAGGGCCATTGGAATAAAGCCAGATGAAAAGATTGCACTCTTTTCTGATAATTCATGCCGATGGCTTGTTGCCGATCAAGCATTAGTTGTAGACAACCCTGAATTGTTCAATCGAATCATTGAAACATTCCGTTCGAAGGCATCCATGAGATGTATCATTCTTCTATGGGGCGAAAACTCAAGCCTGGCAGCTGAGGGACTGGACGGTATTGGACATCATGGATATGGGATGAGAGAGTCGTAA

Coding sequence (CDS)

ATGGGCGTGGCGGTTCCTTTTACTCATGGATTTCTACCATTTCTGGTCATTCGCTCCAAAGAAGCCCTGATTTTGGAATCTCTTGCCAATCGAAGAGAGAGAGAGGTTGGAGTTATGGAGGAATTAGTTCCTGATATTTGGAGGTTTTCAGCGGAGAGGTATGGCGATCGGGTAGCGTTGCTGGATCCATACCATAATCCTGCTTCCAAGATTACTTATAAACAGCTAGAACAAAGTATCTTGAATTTCTGTGAAGGTCTTAGGGCCATTGGAATAAAGCCAGATGAAAAGATTGCACTCTTTTCTGATAATTCATGCCGATGGCTTGTTGCCGATCAAGCATTAGTTGTAGACAACCCTGAATTGTTCAATCGAATCATTGAAACATTCCGTTCGAAGGCATCCATGAGATGTATCATTCTTCTATGGGGCGAAAACTCAAGCCTGGCAGCTGAGGGACTGGACGGTATTGGACATCATGGATATGGGATGAGAGAGTCGTAA

Protein sequence

MGVAVPFTHGFLPFLVIRSKEALILESLANRREREVGVMEELVPDIWRFSAERYGDRVALLDPYHNPASKITYKQLEQSILNFCEGLRAIGIKPDEKIALFSDNSCRWLVADQALVVDNPELFNRIIETFRSKASMRCIILLWGENSSLAAEGLDGIGHHGYGMRES
Homology
[Close]
BLAST of Carg13860 vs. NCBI nr
Match: XP_022958899.1 (probable acyl-activating enzyme 16, chloroplastic isoform X2 [Cucurbita moschata])

HSP 1 Score: 205.3 bits (521), Expect = 1.6e-49
Identity = 111/188 (59.04%), Postives = 121/188 (64.36%), Query Frame = 0 

Query: 9   HGFLP---FLVIRSKEALILESLANRREREVGVMEELVPDIWRFSAERYGDRVALLDPYH 68
           H  LP    L +R    L+  S        V    + VPDIWR SAERYGDRVAL+DPYH
Sbjct: 6   HDVLPETETLQLRRYSPLLESSFVPGNSATVSDEWQAVPDIWRSSAERYGDRVALVDPYH 65

Query: 69  NPASKITYKQLEQSILNFCEGLRAIGIKPDEKIALFSDNSCRWLVADQ------------ 128
           NPASK+TYK+LEQSILNF EGLRAIGIKPDEKIALF+DNSCRWLVADQ            
Sbjct: 66  NPASKMTYKELEQSILNFSEGLRAIGIKPDEKIALFADNSCRWLVADQGIMTMGAINVVR 125

Query: 129 -------------------ALVVDNPELFNRIIETFRSKASMRCIILLWGENSSLAAEGL 163
                              ALVVDNPELFNRI+ETF  KASMRC+ILLWGE SSLA EG+
Sbjct: 126 GSRSSSEELLQIYNHSESVALVVDNPELFNRIVETFHLKASMRCVILLWGEKSSLAHEGM 185

[Close]
BLAST of Carg13860 vs. NCBI nr
Match: XP_023006518.1 (probable acyl-activating enzyme 16, chloroplastic isoform X2 [Cucurbita maxima])

HSP 1 Score: 205.3 bits (521), Expect = 1.6e-49
Identity = 111/188 (59.04%), Postives = 121/188 (64.36%), Query Frame = 0 

Query: 9   HGFLP---FLVIRSKEALILESLANRREREVGVMEELVPDIWRFSAERYGDRVALLDPYH 68
           H  LP    L +R    L+  S        V    + VPDIWR SAERYGDRVAL+DPYH
Sbjct: 6   HDVLPETETLQLRRYSPLLESSFVPGNSATVSDEWQAVPDIWRSSAERYGDRVALVDPYH 65

Query: 69  NPASKITYKQLEQSILNFCEGLRAIGIKPDEKIALFSDNSCRWLVADQ------------ 128
           NPASK+TYK+LEQSILNF EGLRAIGIKPDEKIALF+DNSCRWLVADQ            
Sbjct: 66  NPASKMTYKELEQSILNFSEGLRAIGIKPDEKIALFADNSCRWLVADQGIMTMGAINVVR 125

Query: 129 -------------------ALVVDNPELFNRIIETFRSKASMRCIILLWGENSSLAAEGL 163
                              ALVVDNPELFNRI+ETF  KASMRC+ILLWGE SSLA EG+
Sbjct: 126 GSRSSSEELLQIYNHSESVALVVDNPELFNRIVETFHLKASMRCVILLWGEKSSLADEGM 185

[Close]
BLAST of Carg13860 vs. NCBI nr
Match: XP_023548746.1 (probable acyl-activating enzyme 16, chloroplastic isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 204.9 bits (520), Expect = 2.1e-49
Identity = 111/188 (59.04%), Postives = 121/188 (64.36%), Query Frame = 0 

Query: 9   HGFLP---FLVIRSKEALILESLANRREREVGVMEELVPDIWRFSAERYGDRVALLDPYH 68
           H  LP    L +R    L+  S        V    + VPDIWR SAERYGDRVAL+DPYH
Sbjct: 6   HDVLPETETLQLRRYSPLLESSFVPGNSATVSDDWQAVPDIWRSSAERYGDRVALVDPYH 65

Query: 69  NPASKITYKQLEQSILNFCEGLRAIGIKPDEKIALFSDNSCRWLVADQ------------ 128
           NPASK+TYK+LEQSILNF EGLRAIGIKPDEKIALF+DNSCRWLVADQ            
Sbjct: 66  NPASKMTYKELEQSILNFSEGLRAIGIKPDEKIALFADNSCRWLVADQGIMTMGAINVVR 125

Query: 129 -------------------ALVVDNPELFNRIIETFRSKASMRCIILLWGENSSLAAEGL 163
                              ALVVDNPELFNRI+ETF  KASMRC+ILLWGE SSLA EG+
Sbjct: 126 GSRSSSEELLQIYNHSESVALVVDNPELFNRIVETFHLKASMRCVILLWGEKSSLAHEGM 185

[Close]
BLAST of Carg13860 vs. NCBI nr
Match: XP_022958898.1 (probable acyl-activating enzyme 16, chloroplastic isoform X1 [Cucurbita moschata])

HSP 1 Score: 204.5 bits (519), Expect = 2.8e-49
Identity = 108/179 (60.34%), Postives = 118/179 (65.92%), Query Frame = 0 

Query: 15  LVIRSKEALILESLANRREREVGVMEELVPDIWRFSAERYGDRVALLDPYHNPASKITYK 74
           L +R    L+  S        V    + VPDIWR SAERYGDRVAL+DPYHNPASK+TYK
Sbjct: 66  LQLRRYSPLLESSFVPGNSATVSDEWQAVPDIWRSSAERYGDRVALVDPYHNPASKMTYK 125

Query: 75  QLEQSILNFCEGLRAIGIKPDEKIALFSDNSCRWLVADQ--------------------- 134
           +LEQSILNF EGLRAIGIKPDEKIALF+DNSCRWLVADQ                     
Sbjct: 126 ELEQSILNFSEGLRAIGIKPDEKIALFADNSCRWLVADQGIMTMGAINVVRGSRSSSEEL 185

Query: 135 ----------ALVVDNPELFNRIIETFRSKASMRCIILLWGENSSLAAEGLDGIGHHGY 163
                     ALVVDNPELFNRI+ETF  KASMRC+ILLWGE SSLA EG+DGI    Y
Sbjct: 186 LQIYNHSESVALVVDNPELFNRIVETFHLKASMRCVILLWGEKSSLAHEGMDGIAVFDY 244

[Close]
BLAST of Carg13860 vs. NCBI nr
Match: XP_023006517.1 (probable acyl-activating enzyme 16, chloroplastic isoform X1 [Cucurbita maxima])

HSP 1 Score: 204.5 bits (519), Expect = 2.8e-49
Identity = 108/179 (60.34%), Postives = 118/179 (65.92%), Query Frame = 0 

Query: 15  LVIRSKEALILESLANRREREVGVMEELVPDIWRFSAERYGDRVALLDPYHNPASKITYK 74
           L +R    L+  S        V    + VPDIWR SAERYGDRVAL+DPYHNPASK+TYK
Sbjct: 66  LQLRRYSPLLESSFVPGNSATVSDEWQAVPDIWRSSAERYGDRVALVDPYHNPASKMTYK 125

Query: 75  QLEQSILNFCEGLRAIGIKPDEKIALFSDNSCRWLVADQ--------------------- 134
           +LEQSILNF EGLRAIGIKPDEKIALF+DNSCRWLVADQ                     
Sbjct: 126 ELEQSILNFSEGLRAIGIKPDEKIALFADNSCRWLVADQGIMTMGAINVVRGSRSSSEEL 185

Query: 135 ----------ALVVDNPELFNRIIETFRSKASMRCIILLWGENSSLAAEGLDGIGHHGY 163
                     ALVVDNPELFNRI+ETF  KASMRC+ILLWGE SSLA EG+DGI    Y
Sbjct: 186 LQIYNHSESVALVVDNPELFNRIVETFHLKASMRCVILLWGEKSSLADEGMDGISVFDY 244

[Close]
BLAST of Carg13860 vs. TAIR10
Match: AT4G14070.1 (acyl-activating enzyme 15)

HSP 1 Score: 170.2 bits (430), Expect = 1.0e-42
Identity = 83/143 (58.04%), Postives = 98/143 (68.53%), Query Frame = 0 

Query: 43  VPDIWRFSAERYGDRVALLDPYHNPASKITYKQLEQSILNFCEGLRAIGIKPDEKIALFS 102
           VPDIWR SAE+YGDRVAL+DPYH+P  K+TYKQLEQ IL+F EGLR +G+K DEKIALF+
Sbjct: 99  VPDIWRSSAEKYGDRVALVDPYHDPPLKLTYKQLEQEILDFAEGLRVLGVKADEKIALFA 158

Query: 103 DNSCRWLVADQ-------------------------------ALVVDNPELFNRIIETFR 155
           DNSCRWLV+DQ                               A+VVDNPE FNRI E+F 
Sbjct: 159 DNSCRWLVSDQGIMATGAVNVVRGSRSSVEELLQIYRHSESVAIVVDNPEFFNRIAESFT 218

[Close]
BLAST of Carg13860 vs. TAIR10
Match: AT3G23790.1 (AMP-dependent synthetase and ligase family protein)

HSP 1 Score: 161.8 bits (408), Expect = 3.7e-40
Identity = 85/161 (52.80%), Postives = 101/161 (62.73%), Query Frame = 0 

Query: 25  LESLANRREREVGVME-ELVPDIWRFSAERYGDRVALLDPYHNPASKITYKQLEQSILNF 84
           LE L+  RE  +   E + VPDIWR S E+YGDRVA++DPYH+P S  TY+QLEQ IL+F
Sbjct: 64  LERLSLPREAALSSNEWKSVPDIWRSSVEKYGDRVAVVDPYHDPPSTFTYRQLEQEILDF 123

Query: 85  CEGLRAIGIKPDEKIALFSDNSCRWLVADQ------------------------------ 144
            EGLR +G+K DEKIALF+DNSCRWLVADQ                              
Sbjct: 124 VEGLRVVGVKADEKIALFADNSCRWLVADQGIMATGAVNVVRGSRSSVEELLQIYCHSES 183

Query: 145 -ALVVDNPELFNRIIETFRSKASMRCIILLWGENSSLAAEG 154
            ALVVDNPE FNRI E+F  KA+ + +ILLWGE SSL   G
Sbjct: 184 VALVVDNPEFFNRIAESFSYKAAPKFVILLWGEKSSLVTAG 224

[Close]
BLAST of Carg13860 vs. TAIR10
Match: AT4G11030.1 (AMP-dependent synthetase and ligase family protein)

HSP 1 Score: 43.1 bits (100), Expect = 1.9e-04
Identity = 22/75 (29.33%), Postives = 39/75 (52.00%), Query Frame = 0 

Query: 45  DIWRFSAERYGDRVAL--LDPYHNPASKI---TYKQLEQSILNFCEGLRAIGIKPDEKIA 104
           DI+R + E+Y +   L   +  +  A K    TYK++   ++     LR+ GIK  EK  
Sbjct: 49  DIFRTAVEKYPNNRMLGRREISNGKAGKYVWKTYKEVYDIVIKLGNSLRSCGIKEGEKCG 108

Query: 105 LFSDNSCRWLVADQA 115
           ++  N C W+++ +A
Sbjct: 109 IYGINCCEWIISMEA 123

[Close]
BLAST of Carg13860 vs. Swiss-Prot
Match: sp|Q8W471|AAE15_ARATH (Long-chain-fatty-acid--[acyl-carrier-protein] ligase AEE15, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=AAE15 PE=1 SV=1)

HSP 1 Score: 170.2 bits (430), Expect = 1.9e-41
Identity = 83/143 (58.04%), Postives = 98/143 (68.53%), Query Frame = 0 

Query: 43  VPDIWRFSAERYGDRVALLDPYHNPASKITYKQLEQSILNFCEGLRAIGIKPDEKIALFS 102
           VPDIWR SAE+YGDRVAL+DPYH+P  K+TYKQLEQ IL+F EGLR +G+K DEKIALF+
Sbjct: 99  VPDIWRSSAEKYGDRVALVDPYHDPPLKLTYKQLEQEILDFAEGLRVLGVKADEKIALFA 158

Query: 103 DNSCRWLVADQ-------------------------------ALVVDNPELFNRIIETFR 155
           DNSCRWLV+DQ                               A+VVDNPE FNRI E+F 
Sbjct: 159 DNSCRWLVSDQGIMATGAVNVVRGSRSSVEELLQIYRHSESVAIVVDNPEFFNRIAESFT 218

[Close]
BLAST of Carg13860 vs. Swiss-Prot
Match: sp|Q9LK39|AAE16_ARATH (Probable acyl-activating enzyme 16, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=AAE16 PE=2 SV=1)

HSP 1 Score: 161.8 bits (408), Expect = 6.7e-39
Identity = 85/161 (52.80%), Postives = 101/161 (62.73%), Query Frame = 0 

Query: 25  LESLANRREREVGVME-ELVPDIWRFSAERYGDRVALLDPYHNPASKITYKQLEQSILNF 84
           LE L+  RE  +   E + VPDIWR S E+YGDRVA++DPYH+P S  TY+QLEQ IL+F
Sbjct: 64  LERLSLPREAALSSNEWKSVPDIWRSSVEKYGDRVAVVDPYHDPPSTFTYRQLEQEILDF 123

Query: 85  CEGLRAIGIKPDEKIALFSDNSCRWLVADQ------------------------------ 144
            EGLR +G+K DEKIALF+DNSCRWLVADQ                              
Sbjct: 124 VEGLRVVGVKADEKIALFADNSCRWLVADQGIMATGAVNVVRGSRSSVEELLQIYCHSES 183

Query: 145 -ALVVDNPELFNRIIETFRSKASMRCIILLWGENSSLAAEG 154
            ALVVDNPE FNRI E+F  KA+ + +ILLWGE SSL   G
Sbjct: 184 VALVVDNPEFFNRIAESFSYKAAPKFVILLWGEKSSLVTAG 224

[Close]
BLAST of Carg13860 vs. Swiss-Prot
Match: sp|Q70LM7|LGRA_BREPA (Linear gramicidin synthase subunit A OS=Brevibacillus parabrevis OX=54914 GN=lgrA PE=1 SV=1)

HSP 1 Score: 45.8 bits (107), Expect = 5.4e-04
Identity = 26/97 (26.80%), Postives = 47/97 (48.45%), Query Frame = 0 

Query: 20  KEALILESLANRREREVGVMEELVPDIWRFSAERYGDRVALLDPYHNPASKITYKQLEQS 79
           +E L L+ L    +R    +++    ++    E   D VA++D        +TYKQL + 
Sbjct: 181 RELLALKRLCAEPKRGEKPIDKTFHQLFEQQVEMTPDHVAVVD----RGQSLTYKQLNER 240

Query: 80  ILNFCEGLRAIGIKPDEKIALFSDNSCRWLVADQALV 117
                  LR  G+KPD+++A+  D S   +V+  A++
Sbjct: 241 ANQLAHHLRGKGVKPDDQVAIMLDKSLDMIVSILAVM 273

[Close]
BLAST of Carg13860 vs. TrEMBL
Match: tr|A0A1S3C750|A0A1S3C750_CUCME (probable acyl-activating enzyme 16, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103497672 PE=4 SV=1)

HSP 1 Score: 200.3 bits (508), Expect = 3.4e-48
Identity = 105/174 (60.34%), Postives = 116/174 (66.67%), Query Frame = 0 

Query: 15  LVIRSKEALILESLANRREREVGVMEELVPDIWRFSAERYGDRVALLDPYHNPASKITYK 74
           L +R    L+  S        V    + VPDIWR SAERYGDR+AL+DPYHNPASK+TYK
Sbjct: 63  LQLRRYSPLLESSFVPGTSATVSDEWQAVPDIWRSSAERYGDRIALVDPYHNPASKMTYK 122

Query: 75  QLEQSILNFCEGLRAIGIKPDEKIALFSDNSCRWLVADQ--------------------- 134
           +LEQSILNF EGLRAIGIKPDEKIALF+DNSCRWLVADQ                     
Sbjct: 123 ELEQSILNFSEGLRAIGIKPDEKIALFADNSCRWLVADQGIMTMGAINVVRGSRSSSEEL 182

Query: 135 ----------ALVVDNPELFNRIIETFRSKASMRCIILLWGENSSLAAEGLDGI 158
                     ALVVDNPELFNRI+ETF  KASMRC+ILLWGE SSLA EG+D I
Sbjct: 183 LQIYNHSESVALVVDNPELFNRILETFHLKASMRCVILLWGEKSSLANEGVDDI 236

[Close]
BLAST of Carg13860 vs. TrEMBL
Match: tr|A0A0A0KA45|A0A0A0KA45_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G007970 PE=4 SV=1)

HSP 1 Score: 199.9 bits (507), Expect = 4.5e-48
Identity = 99/148 (66.89%), Postives = 108/148 (72.97%), Query Frame = 0 

Query: 41  ELVPDIWRFSAERYGDRVALLDPYHNPASKITYKQLEQSILNFCEGLRAIGIKPDEKIAL 100
           + VPDIWR SAERYGDR+AL+DPYHNPASK+TYK+LEQSILNF EGLR IGIKPDEKIAL
Sbjct: 89  QAVPDIWRSSAERYGDRIALVDPYHNPASKMTYKELEQSILNFSEGLRVIGIKPDEKIAL 148

Query: 101 FSDNSCRWLVADQ-------------------------------ALVVDNPELFNRIIET 158
           F+DNSCRWLVADQ                               ALVVDNPELFNRI+ET
Sbjct: 149 FADNSCRWLVADQGIMTMGAINVVRGSRSSSEELLQIYNHSESVALVVDNPELFNRIVET 208

[Close]
BLAST of Carg13860 vs. TrEMBL
Match: tr|A0A2P5FCI4|A0A2P5FCI4_9ROSA (2,3-dihydroxybenzoate-AMP ligase OS=Trema orientalis OX=63057 GN=TorRG33x02_086340 PE=4 SV=1)

HSP 1 Score: 175.6 bits (444), Expect = 9.1e-41
Identity = 85/151 (56.29%), Postives = 103/151 (68.21%), Query Frame = 0 

Query: 43  VPDIWRFSAERYGDRVALLDPYHNPASKITYKQLEQSILNFCEGLRAIGIKPDEKIALFS 102
           VPDIWR SAE+YGDR+A++DPYH+P   +TYKQLEQ IL+F EGLR IGIKPDEK+ALF+
Sbjct: 93  VPDIWRTSAEKYGDRIAVMDPYHDPPLNLTYKQLEQEILDFSEGLRVIGIKPDEKLALFA 152

Query: 103 DNSCRWLVADQ-------------------------------ALVVDNPELFNRIIETFR 162
           DNSCRWLVADQ                                L VD+PELFNRI ETFR
Sbjct: 153 DNSCRWLVADQGIMTTGAINVVRGSRSSVEELLQIYSHSESVGLAVDSPELFNRISETFR 212

[Close]
BLAST of Carg13860 vs. TrEMBL
Match: tr|A0A218WW65|A0A218WW65_PUNGR (Uncharacterized protein OS=Punica granatum OX=22663 GN=CDL15_Pgr004951 PE=4 SV=1)

HSP 1 Score: 174.9 bits (442), Expect = 1.5e-40
Identity = 84/151 (55.63%), Postives = 103/151 (68.21%), Query Frame = 0 

Query: 43  VPDIWRFSAERYGDRVALLDPYHNPASKITYKQLEQSILNFCEGLRAIGIKPDEKIALFS 102
           VPDIWR SAE+YGDR+AL+DPYH+P S +TYKQLEQ ILNF EGLR +G+KP+EK+ALF+
Sbjct: 97  VPDIWRSSAEKYGDRIALVDPYHDPPSNMTYKQLEQEILNFSEGLRVVGVKPEEKLALFA 156

Query: 103 DNSCRWLVADQ-------------------------------ALVVDNPELFNRIIETFR 162
           DNSCRWLV+DQ                               ALVVDNPELFNR+ E F 
Sbjct: 157 DNSCRWLVSDQGIMATGAINVVRGSRSSVEELLQIYQHSESVALVVDNPELFNRMAEVFF 216

[Close]
BLAST of Carg13860 vs. TrEMBL
Match: tr|A0A2I0LD95|A0A2I0LD95_PUNGR (Uncharacterized protein OS=Punica granatum OX=22663 GN=CRG98_001421 PE=4 SV=1)

HSP 1 Score: 174.9 bits (442), Expect = 1.5e-40
Identity = 84/151 (55.63%), Postives = 103/151 (68.21%), Query Frame = 0 

Query: 43  VPDIWRFSAERYGDRVALLDPYHNPASKITYKQLEQSILNFCEGLRAIGIKPDEKIALFS 102
           VPDIWR SAE+YGDR+AL+DPYH+P S +TYKQLEQ ILNF EGLR +G+KP+EK+ALF+
Sbjct: 48  VPDIWRSSAEKYGDRIALVDPYHDPPSNMTYKQLEQEILNFSEGLRVVGVKPEEKLALFA 107

Query: 103 DNSCRWLVADQ-------------------------------ALVVDNPELFNRIIETFR 162
           DNSCRWLV+DQ                               ALVVDNPELFNR+ E F 
Sbjct: 108 DNSCRWLVSDQGIMATGAINVVRGSRSSVEELLQIYQHSESVALVVDNPELFNRMAEVFF 167

The following BLAST results are available for this feature:
BLAST of Carg13860 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022958899.11.6e-4959.04probable acyl-activating enzyme 16, chloroplastic isoform X2 [Cucurbita moschata... [more]
XP_023006518.11.6e-4959.04probable acyl-activating enzyme 16, chloroplastic isoform X2 [Cucurbita maxima][more]
XP_023548746.12.1e-4959.04probable acyl-activating enzyme 16, chloroplastic isoform X2 [Cucurbita pepo sub... [more]
XP_022958898.12.8e-4960.34probable acyl-activating enzyme 16, chloroplastic isoform X1 [Cucurbita moschata... [more]
XP_023006517.12.8e-4960.34probable acyl-activating enzyme 16, chloroplastic isoform X1 [Cucurbita maxima][more]
BLAST of Carg13860 vs. TAIR10
Match NameE-valueIdentityDescription
AT4G14070.11.0e-4258.04acyl-activating enzyme 15[more]
AT3G23790.13.7e-4052.80AMP-dependent synthetase and ligase family protein[more]
AT4G11030.11.9e-0429.33AMP-dependent synthetase and ligase family protein[more]
BLAST of Carg13860 vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|Q8W471|AAE15_ARATH1.9e-4158.04Long-chain-fatty-acid--[acyl-carrier-protein] ligase AEE15, chloroplastic OS=Ara... [more]
sp|Q9LK39|AAE16_ARATH6.7e-3952.80Probable acyl-activating enzyme 16, chloroplastic OS=Arabidopsis thaliana OX=370... [more]
sp|Q70LM7|LGRA_BREPA5.4e-0426.80Linear gramicidin synthase subunit A OS=Brevibacillus parabrevis OX=54914 GN=lgr... [more]
BLAST of Carg13860 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A1S3C750|A0A1S3C750_CUCME3.4e-4860.34probable acyl-activating enzyme 16, chloroplastic OS=Cucumis melo OX=3656 GN=LOC... [more]
tr|A0A0A0KA45|A0A0A0KA45_CUCSA4.5e-4866.89Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G007970 PE=4 SV=1[more]
tr|A0A2P5FCI4|A0A2P5FCI4_9ROSA9.1e-4156.292,3-dihydroxybenzoate-AMP ligase OS=Trema orientalis OX=63057 GN=TorRG33x02_0863... [more]
tr|A0A218WW65|A0A218WW65_PUNGR1.5e-4055.63Uncharacterized protein OS=Punica granatum OX=22663 GN=CDL15_Pgr004951 PE=4 SV=1[more]
tr|A0A2I0LD95|A0A2I0LD95_PUNGR1.5e-4055.63Uncharacterized protein OS=Punica granatum OX=22663 GN=CRG98_001421 PE=4 SV=1[more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0003824catalytic activity
Vocabulary: Biological Process
TermDefinition
GO:0008152metabolic process
Vocabulary: INTERPRO
TermDefinition
IPR000873AMP-dep_Synth/Lig
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008152 metabolic process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003824 catalytic activity
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg13860-RACarg13860-RAmRNA


InterPro
Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3DG3DSA:3.40.50.980coord: 39..117
e-value: 8.4E-11
score: 43.7
NoneNo IPR availablePANTHERPTHR43813:SF2LONG-CHAIN-FATTY-ACID-- ACYL-CARRIER-PROTEIN LIGASE AEE15, CHLOROPLASTIC-RELATEDcoord: 114..155
NoneNo IPR availablePANTHERPTHR43813:SF2LONG-CHAIN-FATTY-ACID-- ACYL-CARRIER-PROTEIN LIGASE AEE15, CHLOROPLASTIC-RELATEDcoord: 25..115
NoneNo IPR availablePANTHERPTHR43813FAMILY NOT NAMEDcoord: 25..115
NoneNo IPR availablePANTHERPTHR43813FAMILY NOT NAMEDcoord: 114..155
NoneNo IPR availableSUPERFAMILYSSF56801Acetyl-CoA synthetase-likecoord: 41..115
IPR000873AMP-dependent synthetase/ligasePFAMPF00501AMP-bindingcoord: 50..115
e-value: 1.1E-11
score: 43.9

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Carg13860Cp4.1LG17g04020Cucurbita pepo (Zucchini)carcpeB0851
Carg13860CsGy6G001040Cucumber (Gy14) v2carcgybB0602
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Carg13860Silver-seed gourdcarcarB518
Carg13860Cucurbita maxima (Rimu)carcmaB0841
Carg13860Cucurbita maxima (Rimu)carcmaB0842
Carg13860Cucurbita moschata (Rifu)carcmoB0819
Carg13860Cucurbita moschata (Rifu)carcmoB0820
Carg13860Cucurbita pepo (Zucchini)carcpeB0850
Carg13860Bottle gourd (USVL1VR-Ls)carlsiB545
Carg13860Melon (DHL92) v3.5.1carmeB0603
Carg13860Melon (DHL92) v3.6.1carmedB0609
Carg13860Watermelon (Charleston Gray)carwcgB0586
Carg13860Watermelon (97103) v1carwmB0601
Carg13860Watermelon (97103) v2carwmbB0628
Carg13860Wax gourdcarwgoB0713