Carg13838 (gene) Silver-seed gourd

Overview
NameCarg13838
Typegene
OrganismCucurbita argyrosperma (Silver-seed gourd)
DescriptionPLAC8 family protein
LocationCucurbita_argyrosperma_scaffold_042 : 157336 .. 160455 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
AAAAAACTCCAACTTCATCTTCTTCCTTGACCGCTAAGAAACCTGAACGTGCAAGCTCCGTTGTTGACTGTGAATATCTTTAGATTTCCATATTGATCTTCGAGATTTAGCTTCGAATCCTTTCTGAAGTGGTTCATCCGCAACCTGACCATGGCGTCGCATGCCGATTACCTTGAGAAAATGCAGCTTCGTCAGGATTACAGAAATTTCTGGCATACGGATCTCACGGGCACCATTTCTGCCAATACGCCTTGTATGTATTTGAAATTTCTTGTTCGATTTTGGTTATCTTTTTGGATTAATCGATTGAGAGGGAAGAATGTTGAAAATCTTGTGTTCGTACTTGATTTCTTTTACTCTGTTTCGTTGATGGGATAGGGTAAAAATTACCTGAAATCGATTCATCTTTGATTTTGCTTGCTATGACCTTTTACCTTTCTCTAGCTCTGTTCCTTTCCAAAGGGTTAACAATGGCGGCTATTGGTTTATTTGCTACAGGGTATTCTTTAATTTGTTTATTCTATTAAATATCTTGATGTTGCTTGACCAATCAATTTTCTCCCAAACCATATAAATACGCTGATTATTTCTTTATTTTTTTTCTTCTGTTTTGCAGATTGTTGCTTTTCTATATTCTGGTAAGGTGTTTGTTCTCTGATGAGTTCTTCTCAATCGTAGTTCCGATTTCAGGAGTCGAAAAACTTCGCTATGTTTATGAGCATTTGTGTTCTTAGTTCTTTAATGCAATGTAATATTCTGCAAGTTTCATATGGCTTCAAAAGAATGTAGATGTATGCTTGCTTTATAATGTTCAAAACGGTATTCGCTTTTTATTGCTTTTGAGTTTTCTAGAGTATTTTGGTATGGTTTTTCTTATAATGCTTCTTGATTGTGTGAAAAGTGCCCCATGTGCTTCTTACCTTCTGCGAAAACGAGCTCTTTATGACGATATGTCGAGGTATTTTCGGCGAAGGTTTGTAATTTTACCACAAGATAAAGTGTGTACCATTGCTGAATCCTTTGGTTAATCTATCATAGATACAAATGCTGTGGTGGTTACATGCCTTGTAGTGGCAAATGTGGAGAAGGCCACTGCCCTGAAGCTTGTCTATGCACCGAGGTTCGTTTATCGATCGAGAACCATGGTCCCCTTTGATCCTCTAGCTATCTAAACATCATTTCATTCATTTATTCTCCTATGGGATCTAGTTTGAAGAATTGTGCGTTCTTTTCAGGTTTTCTGTTGCTTTGCAAATTCAGTTGCATCAACACGTTTCATGTTGCAAGACGAGTTCAATATACAGACAACAGAGTGTGATAACTGCATCATCGTGTCGTCTTCTCTCTCAAACCATTCGTTCATTAAGCTGCTTGTGCCTCAGCCTTTTCTCCCTTTAACAAGTTTGTCTTACTTTGTAGGGCTTTATGTTGTGCCTCTCACAACTGGCTTGCATATGCTCCATAATTGCTTGCTTGCTTGGAAGTGAAGAGCTTCAAGAAGCCTCGGATATAGTGACCTGTTTATCTAACCTTGTGTACTGCAGGTATGGGGTTGCATTCAATCTTCTTAACTCATATTGACATTAAAGTTCTCTTTTAAGAATTTTGAACTCGTTTGTTTTGCAGTGTATGTGCGTGCATGCAGGTATGTCCCGATTTTTTAAAAAGCTTAAAAGATGTCTACCTATAATTGGTGTATATGCATTTTCTTTCTTTTCTCATATGGCTAATCTAAATCTCTACTAGGTTCATGAAACATAACTTTCCACATTTTATATTGACTTTCATAACTCATAAACTTGAGCTTATGAAACTTACCATTTTGTTACAAATCACAAACTCACGAGTAAAAGACGCGCTACCCAAACCCAGGTTTCTACATCCTCTTTTCTGTTGAGGATTGTTTGGAGAGGAGTCCCACATCGAGTAATTACATGGTTGGTATGAGGTCTTTTGGAGAAACCAAAAGCAAAGCCATGAGAGCTTATGCTCAAAGTGGACGATATCATACCATTGTGGAGGTTCGTGGTTTCTAACATAGTATTAGAGTCATCCCCTTAACTGAGTTATGTCAATAGAATCCTCAAATGTTGAACAAAGAAGTTGTGAGCCTCGAGGGTGTAGTCAAAAGTGATGCAAGTGTCGAACAAAGGGTGTACTTTGTTCTTGGACTCTAAAGAAGGAGTCGAGCCCCGATTAAGGGGAGAATGTTTGAGGGCTCCATAGGCCTTAGGGGAGGCTTTATGGTGTAATTTGTTCGAGGGGAGGATTGTTGGGAGAGGAGTCCCACGTTGGCTAATTAAGGGGTTGATCATGGGGTTATAGGTAAGGAATGCATCTCCATTGGTACGAGGCTTTTCAGGGAAACCCAAAGTAAAGCCGTGAGAGCTTATGCTCAACTTGTATAGTATCATATCATTGTGGAGGTTCGTGGTTTCTAACATTTCCATCATCTAAACGCTCTTACTCTCAAACTTGATAGAACATGGCTCTTAATCAAACTTAGACACCTTTTATTTTCTTGATTATTTTTTTAGAAATTTATTTTCTTGAAATGTATCATGGAGCTAATTATTTGGTTGCTTGTGTGAGATACTTGAATTCTATATGGGAGTATCTGTAATTTCTGTTGCAAAACCATAGTATTACAGTACAATATGAATCAGTGTTATGCTTTTCTGATGATGTTACCATTGAGAAGTGCAGACACAACACAAGATGGAGTTAGACAAAAGGGATGGCAAGTTTGGACCCCAACCAGCCATGGCTGTGCCTCCTACACAGCAGATGTCTCGGATCAATCAACCGATCCCCGGTCCAGTCGGATATCCTCCTCCGATGTATGGACAACCCTTTGGACACCCACCCCCTCCATATGTTCAAGGCTACCCGCCCCCTCCCTCGGCTCAAGGCTACCCACCACCTCCCCTGGCTCAAGGCTACGCATCCCCTCCCCCAACACAAGGCTACCCGCCCCCTCCCTCGGCTCAAGGCTACCCGCCTCCTCCCCCAGGTCAAGGCTTCTCATCTCCTCCCCCGACTCAAGGCTACCCACCTCCTCCTCGTGCTGAAGACTATCCGCCACCGGCTTATCCTCTGCATCAGCCACCTGGTCAATAC

mRNA sequence

AAAAAACTCCAACTTCATCTTCTTCCTTGACCGCTAAGAAACCTGAACGTGCAAGCTCCGTTGTTGACTGTGAATATCTTTAGATTTCCATATTGATCTTCGAGATTTAGCTTCGAATCCTTTCTGAAGTGGTTCATCCGCAACCTGACCATGGCGTCGCATGCCGATTACCTTGAGAAAATGCAGCTTCGTCAGGATTACAGAAATTTCTGGCATACGGATCTCACGGGCACCATTTCTGCCAATACGCCTTATTGTTGCTTTTCTATATTCTGAGTATTTTGGTATGGTTTTTCTTATAATGCTTCTTGATTGTGTGAAAAGTGCCCCATGTGCTTCTTACCTTCTGCGAAAACGAGCTCTTTATGACGATATGTCGAGATACAAATGCTGTGGTGGTTACATGCCTTGTAGTGGCAAATGTGGAGAAGGCCACTGCCCTGAAGCTTGTCTATGCACCGAGGTTTTCTGTTGCTTTGCAAATTCAGTTGCATCAACACGTTTCATGTTGCAAGACGAGTTCAATATACAGACAACAGAGTGTGATAACTGCATCATCGGCTTTATGTTGTGCCTCTCACAACTGGCTTGCATATGCTCCATAATTGCTTGCTTGCTTGGAAGTGAAGAGCTTCAAGAAGCCTCGGATATAGTGACCTGTTTATCTAACCTTGTGTACTGCAGTGTATGTGCGTGCATGCAGACACAACACAAGATGGAGTTAGACAAAAGGGATGGCAAGTTTGGACCCCAACCAGCCATGGCTGTGCCTCCTACACAGCAGATGTCTCGGATCAATCAACCGATCCCCGGTCCAGTCGGATATCCTCCTCCGATGTATGGACAACCCTTTGGACACCCACCCCCTCCATATGTTCAAGGCTACCCGCCCCCTCCCTCGGCTCAAGGCTACCCACCACCTCCCCTGGCTCAAGGCTACGCATCCCCTCCCCCAACACAAGGCTACCCGCCCCCTCCCTCGGCTCAAGGCTACCCGCCTCCTCCCCCAGGTCAAGGCTTCTCATCTCCTCCCCCGACTCAAGGCTACCCACCTCCTCCTCGTGCTGAAGACTATCCGCCACCGGCTTATCCTCTGCATCAGCCACCTGGTCAATAC

Coding sequence (CDS)

ATGCCGATTACCTTGAGAAAATGCAGCTTCGTCAGGATTACAGAAATTTCTGGCATACGGATCTCACGGGCACCATTTCTGCCAATACGCCTTATTGTTGCTTTTCTATATTCTGAGTATTTTGGTATGGTTTTTCTTATAATGCTTCTTGATTGTGTGAAAAGTGCCCCATGTGCTTCTTACCTTCTGCGAAAACGAGCTCTTTATGACGATATGTCGAGATACAAATGCTGTGGTGGTTACATGCCTTGTAGTGGCAAATGTGGAGAAGGCCACTGCCCTGAAGCTTGTCTATGCACCGAGGTTTTCTGTTGCTTTGCAAATTCAGTTGCATCAACACGTTTCATGTTGCAAGACGAGTTCAATATACAGACAACAGAGTGTGATAACTGCATCATCGGCTTTATGTTGTGCCTCTCACAACTGGCTTGCATATGCTCCATAATTGCTTGCTTGCTTGGAAGTGAAGAGCTTCAAGAAGCCTCGGATATAGTGACCTGTTTATCTAACCTTGTGTACTGCAGTGTATGTGCGTGCATGCAGACACAACACAAGATGGAGTTAGACAAAAGGGATGGCAAGTTTGGACCCCAACCAGCCATGGCTGTGCCTCCTACACAGCAGATGTCTCGGATCAATCAACCGATCCCCGGTCCAGTCGGATATCCTCCTCCGATGTATGGACAACCCTTTGGACACCCACCCCCTCCATATGTTCAAGGCTACCCGCCCCCTCCCTCGGCTCAAGGCTACCCACCACCTCCCCTGGCTCAAGGCTACGCATCCCCTCCCCCAACACAAGGCTACCCGCCCCCTCCCTCGGCTCAAGGCTACCCGCCTCCTCCCCCAGGTCAAGGCTTCTCATCTCCTCCCCCGACTCAAGGCTACCCACCTCCTCCTCGTGCTGAAGACTATCCGCCACCGGCTTATCCTCTGCATCAGCCACCTGGTCAATAC

Protein sequence

MPITLRKCSFVRITEISGIRISRAPFLPIRLIVAFLYSEYFGMVFLIMLLDCVKSAPCASYLLRKRALYDDMSRYKCCGGYMPCSGKCGEGHCPEACLCTEVFCCFANSVASTRFMLQDEFNIQTTECDNCIIGFMLCLSQLACICSIIACLLGSEELQEASDIVTCLSNLVYCSVCACMQTQHKMELDKRDGKFGPQPAMAVPPTQQMSRINQPIPGPVGYPPPMYGQPFGHPPPPYVQGYPPPPSAQGYPPPPLAQGYASPPPTQGYPPPPSAQGYPPPPPGQGFSSPPPTQGYPPPPRAEDYPPPAYPLHQPPGQY
Homology
[Close]
BLAST of Carg13838 vs. NCBI nr
Match: XP_022964021.1 (leucine-rich repeat extensin-like protein 2 [Cucurbita moschata])

HSP 1 Score: 372.5 bits (955), Expect = 1.5e-99
Identity = 185/185 (100.00%), Postives = 185/185 (100.00%), Query Frame = 0 

Query: 56  APCASYLLRKRALYDDMSRYKCCGGYMPCSGKCGEGHCPEACLCTEVFCCFANSVASTRF 115
           APCASYLLRKRALYDDMSRYKCCGGYMPCSGKCGEGHCPEACLCTEVFCCFANSVASTRF
Sbjct: 43  APCASYLLRKRALYDDMSRYKCCGGYMPCSGKCGEGHCPEACLCTEVFCCFANSVASTRF 102

Query: 116 MLQDEFNIQTTECDNCIIGFMLCLSQLACICSIIACLLGSEELQEASDIVTCLSNLVYCS 175
           MLQDEFNIQTTECDNCIIGFMLCLSQLACICSIIACLLGSEELQEASDIVTCLSNLVYCS
Sbjct: 103 MLQDEFNIQTTECDNCIIGFMLCLSQLACICSIIACLLGSEELQEASDIVTCLSNLVYCS 162

Query: 176 VCACMQTQHKMELDKRDGKFGPQPAMAVPPTQQMSRINQPIPGPVGYPPPMYGQPXXXXX 235
           VCACMQTQHKMELDKRDGKFGPQPAMAVPPTQQMSRINQPIPGPVGYPPPMYGQPXXXXX
Sbjct: 163 VCACMQTQHKMELDKRDGKFGPQPAMAVPPTQQMSRINQPIPGPVGYPPPMYGQPXXXXX 222

Query: 236 XXXVQ 241
           XXXVQ
Sbjct: 223 XXXVQ 227

[Close]
BLAST of Carg13838 vs. NCBI nr
Match: XP_023513590.1 (leucine-rich repeat extensin-like protein 2 isoform X3 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 369.4 bits (947), Expect = 1.2e-98
Identity = 184/185 (99.46%), Postives = 184/185 (99.46%), Query Frame = 0 

Query: 56  APCASYLLRKRALYDDMSRYKCCGGYMPCSGKCGEGHCPEACLCTEVFCCFANSVASTRF 115
           APCASYLLRKRALYDDMSRYKCCGGYMPCSGKCGEGHCPEACLCTEVFCCFANSVASTRF
Sbjct: 43  APCASYLLRKRALYDDMSRYKCCGGYMPCSGKCGEGHCPEACLCTEVFCCFANSVASTRF 102

Query: 116 MLQDEFNIQTTECDNCIIGFMLCLSQLACICSIIACLLGSEELQEASDIVTCLSNLVYCS 175
           MLQDEFNIQTTECDNCIIGFMLCLSQLACICSIIACLLGSEELQEASDIVTCLSNLVYCS
Sbjct: 103 MLQDEFNIQTTECDNCIIGFMLCLSQLACICSIIACLLGSEELQEASDIVTCLSNLVYCS 162

Query: 176 VCACMQTQHKMELDKRDGKFGPQPAMAVPPTQQMSRINQPIPGPVGYPPPMYGQPXXXXX 235
           VCACMQTQHKMELDKRDGKFGPQ AMAVPPTQQMSRINQPIPGPVGYPPPMYGQPXXXXX
Sbjct: 163 VCACMQTQHKMELDKRDGKFGPQQAMAVPPTQQMSRINQPIPGPVGYPPPMYGQPXXXXX 222

Query: 236 XXXVQ 241
           XXXVQ
Sbjct: 223 XXXVQ 227

[Close]
BLAST of Carg13838 vs. NCBI nr
Match: XP_023513587.1 (leucine-rich repeat extensin-like protein 2 isoform X1 [Cucurbita pepo subsp. pepo] >XP_023513588.1 leucine-rich repeat extensin-like protein 2 isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 369.4 bits (947), Expect = 1.2e-98
Identity = 184/185 (99.46%), Postives = 184/185 (99.46%), Query Frame = 0 

Query: 56  APCASYLLRKRALYDDMSRYKCCGGYMPCSGKCGEGHCPEACLCTEVFCCFANSVASTRF 115
           APCASYLLRKRALYDDMSRYKCCGGYMPCSGKCGEGHCPEACLCTEVFCCFANSVASTRF
Sbjct: 43  APCASYLLRKRALYDDMSRYKCCGGYMPCSGKCGEGHCPEACLCTEVFCCFANSVASTRF 102

Query: 116 MLQDEFNIQTTECDNCIIGFMLCLSQLACICSIIACLLGSEELQEASDIVTCLSNLVYCS 175
           MLQDEFNIQTTECDNCIIGFMLCLSQLACICSIIACLLGSEELQEASDIVTCLSNLVYCS
Sbjct: 103 MLQDEFNIQTTECDNCIIGFMLCLSQLACICSIIACLLGSEELQEASDIVTCLSNLVYCS 162

Query: 176 VCACMQTQHKMELDKRDGKFGPQPAMAVPPTQQMSRINQPIPGPVGYPPPMYGQPXXXXX 235
           VCACMQTQHKMELDKRDGKFGPQ AMAVPPTQQMSRINQPIPGPVGYPPPMYGQPXXXXX
Sbjct: 163 VCACMQTQHKMELDKRDGKFGPQQAMAVPPTQQMSRINQPIPGPVGYPPPMYGQPXXXXX 222

Query: 236 XXXVQ 241
           XXXVQ
Sbjct: 223 XXXVQ 227

[Close]
BLAST of Carg13838 vs. NCBI nr
Match: XP_023000584.1 (leucine-rich repeat extensin-like protein 2 [Cucurbita maxima])

HSP 1 Score: 368.6 bits (945), Expect = 2.1e-98
Identity = 173/175 (98.86%), Postives = 174/175 (99.43%), Query Frame = 0 

Query: 56  APCASYLLRKRALYDDMSRYKCCGGYMPCSGKCGEGHCPEACLCTEVFCCFANSVASTRF 115
           APCASYLLRKRALYDDMSRYKCCGGYMPCSGKCGEGHCPEACLCTEVFCCF NSVASTRF
Sbjct: 43  APCASYLLRKRALYDDMSRYKCCGGYMPCSGKCGEGHCPEACLCTEVFCCFTNSVASTRF 102

Query: 116 MLQDEFNIQTTECDNCIIGFMLCLSQLACICSIIACLLGSEELQEASDIVTCLSNLVYCS 175
           MLQDEFNIQTTECDNCIIGFMLCLSQLACICSIIACLLGSEELQEASDIVTCLSNLVYCS
Sbjct: 103 MLQDEFNIQTTECDNCIIGFMLCLSQLACICSIIACLLGSEELQEASDIVTCLSNLVYCS 162

Query: 176 VCACMQTQHKMELDKRDGKFGPQPAMAVPPTQQMSRINQPIPGPVGYPPPMYGQP 231
           VCACMQTQHK+ELDKRDGKFGPQPAMAVPPTQQMSRINQPIPGPVGYPPPMYGQP
Sbjct: 163 VCACMQTQHKVELDKRDGKFGPQPAMAVPPTQQMSRINQPIPGPVGYPPPMYGQP 217

[Close]
BLAST of Carg13838 vs. NCBI nr
Match: XP_004138581.1 (PREDICTED: uncharacterized protein LOC101221132 [Cucumis sativus] >KGN45682.1 hypothetical protein Csa_6G006690 [Cucumis sativus])

HSP 1 Score: 328.6 bits (841), Expect = 2.4e-86
Identity = 158/177 (89.27%), Postives = 166/177 (93.79%), Query Frame = 0 

Query: 56  APCASYLLRKRALYDDMSRYKCCGGYMPCSGKCGEGHCPEACLCTEVFCCFANSVASTRF 115
           +PC SYLLRKRALYDDMSRY CCGGYMPCSGKCGE HCPEACLCTEVFCCFANSVASTRF
Sbjct: 43  SPCVSYLLRKRALYDDMSRYTCCGGYMPCSGKCGEKHCPEACLCTEVFCCFANSVASTRF 102

Query: 116 MLQDEFNIQTTECDNCIIGFMLCLSQLACICSIIACLLGSEELQEASDIVTCLSNLVYCS 175
           MLQDEFNIQ+TECDNCIIGFMLCLSQLACICSIIACLLGSEELQEASD++TCLSNLVYCS
Sbjct: 103 MLQDEFNIQSTECDNCIIGFMLCLSQLACICSIIACLLGSEELQEASDLITCLSNLVYCS 162

Query: 176 VCACMQTQHKMELDKRDGKFGPQ-PAMAVPPTQQMSRINQPIPGPVG--YPPPMYGQ 230
           VCACMQTQHK+E+DKRDGKF PQ P MAVP TQQMSRI+QPIP PVG   PPP+YGQ
Sbjct: 163 VCACMQTQHKIEMDKRDGKFEPQLPPMAVPLTQQMSRIDQPIPAPVGGYPPPPVYGQ 219

[Close]
BLAST of Carg13838 vs. TAIR10
Match: AT4G23470.1 (PLAC8 family protein)

HSP 1 Score: 278.9 bits (712), Expect = 4.0e-75
Identity = 130/165 (78.79%), Postives = 146/165 (88.48%), Query Frame = 0 

Query: 56  APCASYLLRKRALYDDMSRYKCCGGYMPCSGKCGEGHCPEACLCTEVFCCFANSVASTRF 115
           APCASYLLRKRALYDDMSRY CC GYMPCSG+CGE  CP+ CL TEVFCCFANSVASTRF
Sbjct: 41  APCASYLLRKRALYDDMSRYVCCAGYMPCSGRCGEAKCPQLCLATEVFCCFANSVASTRF 100

Query: 116 MLQDEFNIQTTECDNCIIGFMLCLSQLACICSIIACLLGSEELQEASDIVTCLSNLVYCS 175
           +LQDEF IQTT+CDNCIIGFM+CLSQ+ACI SI+AC++G +EL EAS I+TC S++VYC+
Sbjct: 101 LLQDEFQIQTTKCDNCIIGFMVCLSQVACIFSIVACIVGMDELSEASQILTCCSDMVYCT 160

Query: 176 VCACMQTQHKMELDKRDGKFGPQPAMAVPPTQQMSRINQPIPGPV 221
           VCACMQTQHKME+DKRDGKFGPQP MAVPP QQMSR +Q  P  V
Sbjct: 161 VCACMQTQHKMEMDKRDGKFGPQP-MAVPPAQQMSRFDQATPPAV 204

[Close]
BLAST of Carg13838 vs. TAIR10
Match: AT1G63830.2 (PLAC8 family protein)

HSP 1 Score: 275.0 bits (702), Expect = 5.8e-74
Identity = 124/167 (74.25%), Postives = 146/167 (87.43%), Query Frame = 0 

Query: 57  PCASYLLRKRALYDDMSRYKCCGGYMPCSGKCGEGHCPEACLCTEVFCCFANSVASTRFM 116
           PC SY+LR+RALY+DMSRY CC GYMPCSG+CGE  CP+ CL TEVF CF NSVASTRF+
Sbjct: 44  PCVSYMLRRRALYNDMSRYTCCAGYMPCSGRCGESKCPQLCLATEVFLCFGNSVASTRFL 103

Query: 117 LQDEFNIQTTECDNCIIGFMLCLSQLACICSIIACLLGSEELQEASDIVTCLSNLVYCSV 176
           LQDEFNIQTT+CDNCIIGFM CLSQ+ACI SI+AC++GS+EL EAS I++C +++VYC+V
Sbjct: 104 LQDEFNIQTTQCDNCIIGFMFCLSQVACIFSIVACIVGSDELSEASQILSCCADMVYCTV 163

Query: 177 CACMQTQHKMELDKRDGKFGPQPAMAVPPTQQMSRINQPIPGPVGYP 224
           CACMQTQHK+E+DKRDG FG QP M VPP QQMSR +QP+P PVGYP
Sbjct: 164 CACMQTQHKLEMDKRDGVFGSQP-MGVPPAQQMSRFDQPVPPPVGYP 209

[Close]
BLAST of Carg13838 vs. TAIR10
Match: AT5G41390.1 (PLAC8 family protein)

HSP 1 Score: 271.9 bits (694), Expect = 4.9e-73
Identity = 124/168 (73.81%), Postives = 146/168 (86.90%), Query Frame = 0 

Query: 57  PCASYLLRKRALYDDMSRYKCCGGYMPCSGKCGEGHCPEACLCTEVFCCFANSVASTRFM 116
           PC SYLLRKRALY+DMSRY CCGGYMPCSGKCGE  CP+ CL TEV  CF NSVASTRFM
Sbjct: 44  PCVSYLLRKRALYNDMSRYTCCGGYMPCSGKCGESKCPQFCLATEVCLCFGNSVASTRFM 103

Query: 117 LQDEFNIQTTECDNCIIGFMLCLSQLACICSIIACLLGSEELQEASDIVTCLSNLVYCSV 176
           LQDEFNI TT+CDNCIIGFM CL+Q+ACI S++AC++GS+EL EAS +++CL+++VYC+V
Sbjct: 104 LQDEFNIHTTKCDNCIIGFMFCLNQIACIFSLVACIVGSDELSEASQLLSCLADMVYCTV 163

Query: 177 CACMQTQHKMELDKRDGKFGPQPAMAVPPTQQMSRINQPIPGPVGYPP 225
           CACMQTQHK+E+DKRDG   PQP M+VPP QQMSRI+QP+P   GYPP
Sbjct: 164 CACMQTQHKIEMDKRDGLISPQP-MSVPPAQQMSRIDQPVPPYAGYPP 210

[Close]
BLAST of Carg13838 vs. TrEMBL
Match: tr|A0A0A0KBB6|A0A0A0KBB6_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G006690 PE=4 SV=1)

HSP 1 Score: 328.6 bits (841), Expect = 1.6e-86
Identity = 158/177 (89.27%), Postives = 166/177 (93.79%), Query Frame = 0 

Query: 56  APCASYLLRKRALYDDMSRYKCCGGYMPCSGKCGEGHCPEACLCTEVFCCFANSVASTRF 115
           +PC SYLLRKRALYDDMSRY CCGGYMPCSGKCGE HCPEACLCTEVFCCFANSVASTRF
Sbjct: 43  SPCVSYLLRKRALYDDMSRYTCCGGYMPCSGKCGEKHCPEACLCTEVFCCFANSVASTRF 102

Query: 116 MLQDEFNIQTTECDNCIIGFMLCLSQLACICSIIACLLGSEELQEASDIVTCLSNLVYCS 175
           MLQDEFNIQ+TECDNCIIGFMLCLSQLACICSIIACLLGSEELQEASD++TCLSNLVYCS
Sbjct: 103 MLQDEFNIQSTECDNCIIGFMLCLSQLACICSIIACLLGSEELQEASDLITCLSNLVYCS 162

Query: 176 VCACMQTQHKMELDKRDGKFGPQ-PAMAVPPTQQMSRINQPIPGPVG--YPPPMYGQ 230
           VCACMQTQHK+E+DKRDGKF PQ P MAVP TQQMSRI+QPIP PVG   PPP+YGQ
Sbjct: 163 VCACMQTQHKIEMDKRDGKFEPQLPPMAVPLTQQMSRIDQPIPAPVGGYPPPPVYGQ 219

[Close]
BLAST of Carg13838 vs. TrEMBL
Match: tr|A0A1S3C791|A0A1S3C791_CUCME (survival motor neuron protein-like isoform X4 OS=Cucumis melo OX=3656 GN=LOC103497697 PE=4 SV=1)

HSP 1 Score: 317.0 bits (811), Expect = 4.8e-83
Identity = 156/178 (87.64%), Postives = 161/178 (90.45%), Query Frame = 0 

Query: 56  APCASYLLRKRALYDDMSRYKCCGGYMPCSGKCGEGHCPEACLCTEVFCCFANSVASTRF 115
           AP ASYLLRKRALYDDMSRY CCGGYMPCSGKCGE  CPE CLCTEVFCCFANSVASTRF
Sbjct: 43  APYASYLLRKRALYDDMSRYTCCGGYMPCSGKCGEKRCPEVCLCTEVFCCFANSVASTRF 102

Query: 116 MLQDEFNIQTTECDNCIIGFMLCLSQLACICSIIACLLGSEELQEASDIVTCLSNLVYCS 175
           MLQDEFNIQTTECDNCII F LCLSQLACICSIIACLLGSEEL+EASD++TCLSNLVYCS
Sbjct: 103 MLQDEFNIQTTECDNCIIAFTLCLSQLACICSIIACLLGSEELREASDLLTCLSNLVYCS 162

Query: 176 VCACMQTQHKMELDKRDGKFGPQ-PAMAVPPTQQMSRINQPIPGPVG--YPPPMYGQP 231
           VCACMQTQHK+ELDKRDGKFGPQ P MA P TQQMSRI QPIP  VG   PPP+YGQP
Sbjct: 163 VCACMQTQHKLELDKRDGKFGPQPPPMAAPLTQQMSRIVQPIPAAVGGYPPPPVYGQP 220

[Close]
BLAST of Carg13838 vs. TrEMBL
Match: tr|A0A2I4FU72|A0A2I4FU72_9ROSI (uncharacterized protein LOC109002057 OS=Juglans regia OX=51240 GN=LOC109002057 PE=4 SV=1)

HSP 1 Score: 303.9 bits (777), Expect = 4.2e-79
Identity = 138/174 (79.31%), Postives = 155/174 (89.08%), Query Frame = 0 

Query: 57  PCASYLLRKRALYDDMSRYKCCGGYMPCSGKCGEGHCPEACLCTEVFCCFANSVASTRFM 116
           PCASYLLRKRALY+DMSRY CC GYMPCSG+CGE HCPE CLCTEVFCCF NSVASTRF+
Sbjct: 41  PCASYLLRKRALYNDMSRYTCCAGYMPCSGRCGESHCPEICLCTEVFCCFGNSVASTRFL 100

Query: 117 LQDEFNIQTTECDNCIIGFMLCLSQLACICSIIACLLGSEELQEASDIVTCLSNLVYCSV 176
           LQDEFNIQTT+CDNCIIGFM CL QLACICSI+AC++GS+E+QE S ++ CL++L YC+V
Sbjct: 101 LQDEFNIQTTKCDNCIIGFMFCLQQLACICSIVACIVGSDEIQEISQMLNCLADLTYCTV 160

Query: 177 CACMQTQHKMELDKRDGKFGPQPAMAVPPTQQMSRINQPIPGPVGYP-PPMYGQ 230
           CACMQTQHK+E+DKRDGKFGPQP MAVP  QQMSRI+QP P PVGYP  P YGQ
Sbjct: 161 CACMQTQHKIEMDKRDGKFGPQPMMAVPAVQQMSRIDQPTPPPVGYPSQPAYGQ 214

[Close]
BLAST of Carg13838 vs. TrEMBL
Match: tr|B7FIY1|B7FIY1_MEDTR (PLAC8 family protein OS=Medicago truncatula OX=3880 GN=25502081 PE=2 SV=1)

HSP 1 Score: 300.4 bits (768), Expect = 4.7e-78
Identity = 140/175 (80.00%), Postives = 157/175 (89.71%), Query Frame = 0 

Query: 56  APCASYLLRKRALYDDMSRYKCCGGYMPCSGKCGEGHCPEACLCTEVFCCFANSVASTRF 115
           APC SYLLRKRALYDDMSRY CC GYMPCSG+CGE  CPE CLCTEVF CF NSVASTRF
Sbjct: 42  APCVSYLLRKRALYDDMSRYTCCAGYMPCSGRCGESKCPEFCLCTEVFLCFGNSVASTRF 101

Query: 116 MLQDEFNIQTTECDNCIIGFMLCLSQLACICSIIACLLGSEELQEASDIVTCLSNLVYCS 175
           +LQDEFNIQTT+CDNCIIGFMLCL+Q+ACI SI+A ++GSEE+ EAS I++CL++LVYCS
Sbjct: 102 LLQDEFNIQTTQCDNCIIGFMLCLNQVACIFSIVAMIVGSEEISEASQILSCLADLVYCS 161

Query: 176 VCACMQTQHKMELDKRDGKFGPQPAMAVPPTQQMSRINQPIPGPVGY-PPPMYGQ 230
           VCACMQTQHK+E+DKRDGKFGPQPAMAVPP QQMSRI+QP+P  VGY P P YGQ
Sbjct: 162 VCACMQTQHKVEMDKRDGKFGPQPAMAVPPVQQMSRIDQPVPPSVGYAPQPAYGQ 216

[Close]
BLAST of Carg13838 vs. TrEMBL
Match: tr|A0A2I4H8R2|A0A2I4H8R2_9ROSI (uncharacterized protein LOC109014493 OS=Juglans regia OX=51240 GN=LOC109014493 PE=4 SV=1)

HSP 1 Score: 300.1 bits (767), Expect = 6.1e-78
Identity = 138/176 (78.41%), Postives = 157/176 (89.20%), Query Frame = 0 

Query: 56  APCASYLLRKRALYDDMSRYKCCGGYMPCSGKCGEGHCPEACLCTEVFCCFANSVASTRF 115
           APCASYLLRKRALYDDMSRY CC GYMPCSG+CGE  CPE CLCTEVF CF NSVASTRF
Sbjct: 42  APCASYLLRKRALYDDMSRYVCCAGYMPCSGRCGESKCPEFCLCTEVFLCFGNSVASTRF 101

Query: 116 MLQDEFNIQTTECDNCIIGFMLCLSQLACICSIIACLLGSEELQEASDIVTCLSNLVYCS 175
           +LQD+FNIQTT+CDNCIIGFM CL Q+ACI SI+A ++GSEE+QEAS +++CL+++VYC+
Sbjct: 102 LLQDQFNIQTTQCDNCIIGFMFCLQQIACIFSIVAMIVGSEEIQEASQLLSCLADMVYCT 161

Query: 176 VCACMQTQHKMELDKRDGKFGPQPAMAVPPTQQMSRINQPIPGPVGYPP-PMYGQP 231
           VCACMQTQHK+E+DKRDGKFGPQP MAVPP QQMSRI+QP P  VGYPP P YGQP
Sbjct: 162 VCACMQTQHKIEMDKRDGKFGPQPVMAVPPMQQMSRIDQPFPPSVGYPPQPAYGQP 217

The following BLAST results are available for this feature:
BLAST of Carg13838 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022964021.11.5e-99100.00leucine-rich repeat extensin-like protein 2 [Cucurbita moschata][more]
XP_023513590.11.2e-9899.46leucine-rich repeat extensin-like protein 2 isoform X3 [Cucurbita pepo subsp. pe... [more]
XP_023513587.11.2e-9899.46leucine-rich repeat extensin-like protein 2 isoform X1 [Cucurbita pepo subsp. pe... [more]
XP_023000584.12.1e-9898.86leucine-rich repeat extensin-like protein 2 [Cucurbita maxima][more]
XP_004138581.12.4e-8689.27PREDICTED: uncharacterized protein LOC101221132 [Cucumis sativus] >KGN45682.1 hy... [more]
BLAST of Carg13838 vs. TAIR10
Match NameE-valueIdentityDescription
AT4G23470.14.0e-7578.79PLAC8 family protein[more]
AT1G63830.25.8e-7474.25PLAC8 family protein[more]
AT5G41390.14.9e-7373.81PLAC8 family protein[more]
BLAST of Carg13838 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Carg13838 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0KBB6|A0A0A0KBB6_CUCSA1.6e-8689.27Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G006690 PE=4 SV=1[more]
tr|A0A1S3C791|A0A1S3C791_CUCME4.8e-8387.64survival motor neuron protein-like isoform X4 OS=Cucumis melo OX=3656 GN=LOC1034... [more]
tr|A0A2I4FU72|A0A2I4FU72_9ROSI4.2e-7979.31uncharacterized protein LOC109002057 OS=Juglans regia OX=51240 GN=LOC109002057 P... [more]
tr|B7FIY1|B7FIY1_MEDTR4.7e-7880.00PLAC8 family protein OS=Medicago truncatula OX=3880 GN=25502081 PE=2 SV=1[more]
tr|A0A2I4H8R2|A0A2I4H8R2_9ROSI6.1e-7878.41uncharacterized protein LOC109014493 OS=Juglans regia OX=51240 GN=LOC109014493 P... [more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg13838-RACarg13838-RAmRNA


InterPro
Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 217..319
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 203..319
NoneNo IPR availablePANTHERPTHR31152:SF6SUBFAMILY NOT NAMEDcoord: 54..223
NoneNo IPR availablePANTHERPTHR31152FAMILY NOT NAMEDcoord: 54..223

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Carg13838Csa6G006690Cucumber (Chinese Long) v2carcuB0630
Carg13838MELO3C021191Melon (DHL92) v3.5.1carmeB0603
Carg13838ClCG06G003520Watermelon (Charleston Gray)carwcgB0586
Carg13838CSPI06G00700Wild cucumber (PI 183967)carcpiB0636
Carg13838Cucsa.135680Cucumber (Gy14) v1carcgyB0678
Carg13838CmaCh08G008950Cucurbita maxima (Rimu)carcmaB0842
Carg13838CmaCh17G004490Cucurbita maxima (Rimu)carcmaB0841
Carg13838CmoCh17G004260Cucurbita moschata (Rifu)carcmoB0819
Carg13838CmoCh08G008680Cucurbita moschata (Rifu)carcmoB0820
Carg13838Lsi09G015860Bottle gourd (USVL1VR-Ls)carlsiB545
Carg13838Cp4.1LG17g03650Cucurbita pepo (Zucchini)carcpeB0851
Carg13838Cp4.1LG12g03780Cucurbita pepo (Zucchini)carcpeB0850
Carg13838CsGy6G000760Cucumber (Gy14) v2carcgybB0602
Carg13838MELO3C021191.2Melon (DHL92) v3.6.1carmedB0609
Carg13838CsaV3_6G000790Cucumber (Chinese Long) v3carcucB0637
Carg13838Cla97C06G112890Watermelon (97103) v2carwmbB0628
Carg13838Bhi12G001683Wax gourdcarwgoB0714
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
Carg13838Carg05620Silver-seed gourdcarcarB082
The following block(s) are covering this gene:
GeneOrganismBlock
Carg13838Cucumber (Gy14) v2carcgybB0601
Carg13838Wild cucumber (PI 183967)carcpiB0635
Carg13838Cucumber (Chinese Long) v2carcuB0629
Carg13838Cucumber (Chinese Long) v3carcucB0636
Carg13838Melon (DHL92) v3.5.1carmeB0607
Carg13838Melon (DHL92) v3.6.1carmedB0613
Carg13838Watermelon (97103) v1carwmB0600
Carg13838Watermelon (97103) v1carwmB0601
Carg13838Watermelon (97103) v2carwmbB0627