Carg13151 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg13151
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Profilin family protein
Location	Cucurbita_argyrosperma_scaffold_101 : 624100 .. 624738 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CGGGAAATGTCTTCAACCAATTCGGACGAACGAGATATTTGCTAGAGCTCACTGGTTCATTTCCATGGAAGCTTAAGACGACCGGAGGGTTTCGCGTAAATGGAAGCTTGGAACAAATGCGCATCCGGCAGCAATGGCACCATCGGTAACCAACGCCCAACGCCATGTTGAATCTATGTGCTCGGATACGTTTTTAATGGATGTTTGTTTGTTTATTGTAGGTCAGGCATCGAAGGCTGCTGTCTCGATCAATTATGATCCAACTAGACCTTCCCGCTTGCTGTCGACTATGTAAGTCGTCTGGATTTCCGCTTTGAATGTGCTCGTAACTTGCAATTTCGTGTGTTCGTTGTTGTCTAGGGTTCTTGGCGATTGATTTCTTATGCACTTCACTTTGTTGATTGATAACTTGCAATTTTTTATGCACATGTGGCTTAATTTAACATCTCATATCTTTTGTTTGTTTTTTTGGTCTCTTCTCGAGATTTGTCTGAAGGATAAAATTCAGTATTTAATTGTGATTTTATTGAAGTTTGAGCATTGAGCTGAAGCATTAGGATGGATCCCACGCATCCCTTTGTATAATGATGCAGTCTTTGGGCAGTAGACATGTTTATTTGTCTAAGCTTTTGCTTTCAA

mRNA sequence

CGGGAAATGTCTTCAACCAATTCGGACGAACGAGATATTTGCTAGAGCTCACTGGTTCATTTCCATGGAAGCTTAAGACGACCGGAGGGTTTCGCGTAAATGGAAGCTTGGAACAAATGCGCATCCGGCAGCAATGGCACCATCGGTCAGGCATCGAAGGCTGCTGTCTCGATCAATTATGATCCAACTAGACCTTCCCGCTTGCTGTCGACTATGTAAGTCGTCTGGATTTCCGCTTTGAATGTGCTCGTAACTTGCAATTTCGTGTGTTCGTTGTTGTCTAGGGTTCTTGGCGATTGATTTCTTATGCACTTCACTTTGTTGATTGATAACTTGCAATTTTTTATGCACATGTGGCTTAATTTAACATCTCATATCTTTTGTTTGTTTTTTTGGTCTCTTCTCGAGATTTGTCTGAAGGATAAAATTCAGTATTTAATTGTGATTTTATTGAAGTTTGAGCATTGAGCTGAAGCATTAGGATGGATCCCACGCATCCCTTTGTATAATGATGCAGTCTTTGGGCAGTAGACATGTTTATTTGTCTAAGCTTTTGCTTTCAA

Coding sequence (CDS)

ATGGAAGCTTGGAACAAATGCGCATCCGGCAGCAATGGCACCATCGGTCAGGCATCGAAGGCTGCTGTCTCGATCAATTATGATCCAACTAGACCTTCCCGCTTGCTGTCGACTATGTAA

Protein sequence

MEAWNKCASGSNGTIGQASKAAVSINYDPTRPSRLLSTM

Homology

[Close]

BLAST of Carg13151 vs. NCBI nr
Match: XP_008451862.1 (PREDICTED: uncharacterized protein LOC103493024 [Cucumis melo])

HSP 1 Score: 54.3 bits (129), Expect = 1.1e-04
Identity = 27/38 (71.05%), Postives = 31/38 (81.58%), Query Frame = 0


Query: 2  EAWNKCASGSNGTIGQASKAAVSINYDPTRPSRLLSTM 40
          +AW+K ASGS GT GQ  KAA+ INYDPT PSRLLST+
Sbjct: 8  KAWDKWASGSIGTFGQPLKAALLINYDPTGPSRLLSTI 45

[Close]

BLAST of Carg13151 vs. NCBI nr
Match: XP_011653239.1 (PREDICTED: uncharacterized protein LOC105435190 [Cucumis sativus])

HSP 1 Score: 54.3 bits (129), Expect = 1.1e-04
Identity = 27/38 (71.05%), Postives = 31/38 (81.58%), Query Frame = 0


Query: 2  EAWNKCASGSNGTIGQASKAAVSINYDPTRPSRLLSTM 40
          +AW+K ASGS GT GQ  KAA+ INYDPT PSRLLST+
Sbjct: 8  KAWDKWASGSIGTFGQPLKAALLINYDPTGPSRLLSTI 45

[Close]

BLAST of Carg13151 vs. NCBI nr
Match: XP_022136632.1 (uncharacterized protein LOC111008291 [Momordica charantia])

HSP 1 Score: 52.0 bits (123), Expect = 5.3e-04
Identity = 26/38 (68.42%), Postives = 30/38 (78.95%), Query Frame = 0


Query: 2  EAWNKCASGSNGTIGQASKAAVSINYDPTRPSRLLSTM 40
          +AW+K AS S GT GQ  KAA+ INYDPT PSRLLST+
Sbjct: 8  KAWDKWASASIGTFGQPLKAAMLINYDPTGPSRLLSTI 45

[Close]

BLAST of Carg13151 vs. TAIR10
Match: AT4G19400.1 (Profilin family protein)

HSP 1 Score: 42.4 bits (98), Expect = 7.7e-05
Identity = 22/38 (57.89%), Postives = 28/38 (73.68%), Query Frame = 0


Query: 3  AWNK-CASGSNGTIGQASKAAVSINYDPTRPSRLLSTM 40
          AW+K   +G+ G+ G   KAA+ INYDPT PSRLLST+
Sbjct: 9  AWDKWVTTGNVGSSGNPLKAAILINYDPTGPSRLLSTI 46

[Close]

BLAST of Carg13151 vs. TrEMBL
Match: tr|A0A1S3BTL7|A0A1S3BTL7_CUCME (uncharacterized protein LOC103493024 OS=Cucumis melo OX=3656 GN=LOC103493024 PE=3 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 7.1e-05
Identity = 27/38 (71.05%), Postives = 31/38 (81.58%), Query Frame = 0


Query: 2  EAWNKCASGSNGTIGQASKAAVSINYDPTRPSRLLSTM 40
          +AW+K ASGS GT GQ  KAA+ INYDPT PSRLLST+
Sbjct: 8  KAWDKWASGSIGTFGQPLKAALLINYDPTGPSRLLSTI 45

The following BLAST results are available for this feature:

BLAST of Carg13151 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008451862.1	1.1e-04	71.05	PREDICTED: uncharacterized protein LOC103493024 [Cucumis melo]	[more]
XP_011653239.1	1.1e-04	71.05	PREDICTED: uncharacterized protein LOC105435190 [Cucumis sativus]	[more]
XP_022136632.1	5.3e-04	68.42	uncharacterized protein LOC111008291 [Momordica charantia]	[more]

BLAST of Carg13151 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G19400.1	7.7e-05	57.89	Profilin family protein	[more]

BLAST of Carg13151 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Carg13151 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3BTL7\|A0A1S3BTL7_CUCME	7.1e-05	71.05	uncharacterized protein LOC103493024 OS=Cucumis melo OX=3656 GN=LOC103493024 PE=...	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg13151-RA	Carg13151-RA	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg13151	MELO3C016211	Melon (DHL92) v3.5.1	carmeB0044
Carg13151	CSPI04G06850	Wild cucumber (PI 183967)	carcpiB0051
Carg13151	Cucsa.228730	Cucumber (Gy14) v1	carcgyB0053
Carg13151	CmaCh16G005120	Cucurbita maxima (Rimu)	carcmaB0052
Carg13151	CmaCh04G005960	Cucurbita maxima (Rimu)	carcmaB0055
Carg13151	CmoCh04G006360	Cucurbita moschata (Rifu)	carcmoB0058
Carg13151	Lsi07G007680	Bottle gourd (USVL1VR-Ls)	carlsiB043
Carg13151	Cp4.1LG14g02790	Cucurbita pepo (Zucchini)	carcpeB0057
Carg13151	CsGy4G006780	Cucumber (Gy14) v2	carcgybB0047
Carg13151	MELO3C016211.2	Melon (DHL92) v3.6.1	carmedB0047
Carg13151	CsaV3_4G007060	Cucumber (Chinese Long) v3	carcucB0052

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Carg13151	Carg11427	Silver-seed gourd	carcarB050

The following block(s) are covering this gene:


Gene	Organism	Block
Carg13151	Wax gourd	carwgoB0053
Carg13151	Cucurbita moschata (Rifu)	carcmoB0054
Carg13151	Cucurbita pepo (Zucchini)	carcpeB0061
Carg13151	Cucumber (Chinese Long) v2	carcuB0047
Carg13151	Melon (DHL92) v3.5.1	carmeB0042
Carg13151	Melon (DHL92) v3.6.1	carmedB0045
Carg13151	Watermelon (Charleston Gray)	carwcgB0046
Carg13151	Watermelon (97103) v1	carwmB0043
Carg13151	Watermelon (97103) v2	carwmbB0043