Carg13128 (gene) Silver-seed gourd

Overview
NameCarg13128
Typegene
OrganismCucurbita argyrosperma (Silver-seed gourd)
DescriptionSerine hydroxymethyltransferase
LocationCucurbita_argyrosperma_scaffold_101 : 471450 .. 475010 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexonthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCAGGCTGCGAGTGGTGCCGCAGTGATGGGCTCTCTGCAAGTTGTTGTTTGTGCGAAGGGATCGTCTTTTCCTTCGAAAGGGTCTAGCATTTGTGTGTTTCCGCAACACAAGAAATGGACCGTCTTAAAGCCCTGCAAATCCTCTAGTGTTGAAGCAAACATGGTTGCGGGGAAGGCATCATCTTCTGTATCCGTCTCTGCTCCACAACTTGGAGGTAAAATATAATCTAATGTCATTTACCAATGTTGTGATTGTTTGAAAGAATTTTGGCATCTCTGCTTGATACATGTTAATGGTTTGACCCTTTACTCAGGCAAGAATTGTACAAGATTTATTTTGTTTCTTGATACCAGATTAGCCTAATTGATTGCTAGGAATGAGAAGAACTGTGTTTGATTGAGTGGGAGAATTTGGCACTGGTTAACTTCATTGGTGTTGTGCAGGTGGAAGCGGTTTTGTAGACCATGGCTTGAGCGAAGCAGATCCCGATGTTCGAAGCATTATCGATAAAGAGAAGCAACGACAGTTTAAAAGCCTCGAACTCATTGCATCTGAGAATTTTACATCTAGGGCAGTTATGGAGGCAGTGGGGTCCTGCCTCACAAACAAGTACTCAGAAGGATTGCCTGGAAAAAGGTGAACTTTATTCATTTGATGTACTATGGATGTGAATTCTAATTTTTGGTGGGAGGTTTTGGGATAAGTTGTCGTTGAGAGGATTATTGCGTATTAAGATTTTTGTCATTCATCTCAGGTACTATGGTGGCAATGAACATATTGATGAGCTTGAAACACTCTGTCAACAAAGGGCTCTAGCAGCATTTCGTTTGGACAAGAACAAGTGGGGTGTAAATGTTCAACCATTATCTGGATCACCTGCTAACTTTGAGGTTTATACTGCAATTCTTAATCCACACGATCGAATCATGGTGAGTATCCATATAGTTATTTTTTAATCCCCACGTTAATTTAGATAATCACTGGCGCTACTGACTCATGTTAAATGACTTTAGGGTTTGGACTTGCCTCATGGAGGACATTTGTCTCATGGGTTTATGACACCAAAGAGGCGGGTGTCAGGCACATCAATTTATTTTGAATCTATGCCTTATCGTCTTGACGAGACTACAGGTACGTACCGCACGTGGGATAGAGTTTTTTAATGGTCTCTTCGCTGGTTTGTTCATTCTAAGTAAATAGAAAACTCTTACAGGCATTGTAGATTATGACATGCTCGAAAAAACTGCCAACTTATTTCGACCAAAGCTGATTATTGCTGGTGCAAGTGCTTATCCACGTGATTTTGATTATCCTCGCATGAGAAAAGTCAGGATTCCCGATATTATTCACCATTTTACATTAAGTAGCCTTATTTAGATTCTAACGAGCATTAGTGAATAACTTATTTGATTTGCTCTCGTAGATTGCTGATGCTGTTGGTGCTTTTCTCATGATGGATATGGCTCACATTAGTGGGCTTGTTGCTGCTTCGGTGGTTGCTGATCCTTTTGAATACTGTGATATTGTGACCACAACAACACACAAGGTAAAGAACAAATTTTCATCAAAGGTTATTTCATTTTATAAAATAAGAAATGTGTACATTCAAGAACCAAACCTAGCAGCCAGGGTAGAGAAAGAACTCCAATCCATGTTAACATAAAAAATAAAAGGAAAATTGTGATTACAAAATAAATTCTCTTTGAAGGGCACCCAACTGAAAAGGCCATATGTCATATATGATCACGAGAAGAATTAAAATAGTGTTGGACCCTTCGATTTCTTTCAAGCCATATAATCCACCAAAGAGTTCAAACAACGCATTTCTAGATCACTTTTGCTTTGTCTTTCAGCCACCAGCCCAAGATAGCTTCAGGAAGACAAATATATACCCTTTTTCTGAAAAAATAGACGTGATACGGAGTTCATTTCATACACATTTACTTATATTGATTGTTTTTCGGTCATGATGTCATTCTGCCTTCTCTTAGAACATATTAGCTTTGTATATAATTTGGTAGGATACTGGTTGTTTTTTTGCATAAAAAAACTGCTTTCTCAGCCTGAAAGAAATGTCAAATTGTTTACAGTCTCTGAGAGGCCCAAGAGGTGGCATGATTTTCTTCAGAAAAGATCCTGTCCTGGGAGTTGACTTAGAATCTGCAATTAATAATGCTGTGTTCCCAGGATTACAGGTTGGTTTGACCAGCCTTGTGGTAGCATGTAAAGAAGAGTTCGTTCATTTTGCTCGAGACTTCGACTTTGGTTTTTAAATATGTTGGTTTTATTGTTGTCTTACAGGGTGGTCCTCATAATCATACAATTGGGGGACTTGCTGTCTGCTTGAAGCATGCTCAATCCCTGGAATTTAAGGACTATCAGAACAAGGTACGACACTAAACGTGGTGTAAAACACTTGTTTTCTTATTTTCTAACACAGCTTTTATACTTTAGGTCGTCTCCAATTGCAGAGCTCTTGCTAGTCGACTGGTCGAGTTAGGTTATAAGCTAGTTTCTGGTGGAAGTGACAATCACCTGGTTCTTGTAGATCTGAGGCCATTGGTAAATACATTGTTCCTCACATCTGTGCTTCGAAAATTGAGATGACGATGTAAAGAAGCATGTATTAGCATATGTTAATCTTTAAGTACACTCTAACCACAGGGCATCGATGGGGCACGGGTGGAAAAGATTCTCGACATGGCCTCAATCACTCTCAACAAGAACTCAGTACCAGGTAATGACTTGCGTTTCAAAAGCCGGTCACCATATCCAGTTTTCTTGAACTAACTCCTTGCTATTTTGTGCTTAGGTGACAAGAGTGCTCTAGTTCCAGGAGGCATCCGAATCGGATCGCCTGCCATGACCACCCGAGGATTCACTGAGAAGGAATTCATTGCAGTTGCAGACTTCATACATGAGGGCGTTAAGATAACTCTCGATGCCAAACCACTAGCCCCAGGATCAAAGCTTCAAGAGTTCCTCAAGTTTGTAGCAACCTCTGATTTCCCCTTGATCGACCGAGTTTCGGATCTTCGCTCGAGAGTTGAAGCTCTTACAACTCAATTCCCAATCCCTGGCTTGTAAGTCTCACTACACATAATGAAATGGGTATAAACTTGCAATAAAAATTCCGACAAAAAAAAGGTGACAAAGGTCCGAGGAAATGTCACTTGATCTTGATGATGTCGTGTTTGTGATGATTGTAGTAATAAAAATGGAAAAGACCAAGCAGTTTGTAACATTTTAGAAGCTGCTGTGAGGCTCTGGTAGGAACTATTTTTTAATTTTGTGTTCTTATTCTGTTGTAGTTGCTATGAATAGTTTTATTTTCAGAAAGAAATTTTTATGGGTAGTTTTGGATGTGTTCTCCGAAAAAGTGCTTATCTTATTTGACGAGGATTGGAGTCCTTTCGAGATGTGGTTTTACATTTCTGTCTATTTGTGTTTAATATGTTTTTAAACTTTCGTTTTTGTGTCGAAGCATGAGCTACGGGTTACTGATGACTCGAGGCTTTAGTGGTTTTCTTCTACATTCAATCTCAAAGAGCATCTTTC

mRNA sequence

ATGCAGGCTGCGAGTGGTGCCGCAGTGATGGGCTCTCTGCAAGTTGTTGTTTGTGCGAAGGGATCGTCTTTTCCTTCGAAAGGGTCTAGCATTTGTGTGTTTCCGCAACACAAGAAATGGACCGTCTTAAAGCCCTGCAAATCCTCTAGTGTTGAAGCAAACATGGTTGCGGGGAAGGCATCATCTTCTGTATCCGTCTCTGCTCCACAACTTGGAGGTGGAAGCGGTTTTGTAGACCATGGCTTGAGCGAAGCAGATCCCGATGTTCGAAGCATTATCGATAAAGAGAAGCAACGACAGTTTAAAAGCCTCGAACTCATTGCATCTGAGAATTTTACATCTAGGGCAGTTATGGAGGCAGTGGGGTCCTGCCTCACAAACAAGTACTCAGAAGGATTGCCTGGAAAAAGGTACTATGGTGGCAATGAACATATTGATGAGCTTGAAACACTCTGTCAACAAAGGGCTCTAGCAGCATTTCGTTTGGACAAGAACAAGTGGGGTGTAAATGTTCAACCATTATCTGGATCACCTGCTAACTTTGAGGTTTATACTGCAATTCTTAATCCACACGATCGAATCATGGGTTTGGACTTGCCTCATGGAGGACATTTGTCTCATGGGTTTATGACACCAAAGAGGCGGGTGTCAGGCACATCAATTTATTTTGAATCTATGCCTTATCGTCTTGACGAGACTACAGAACATATTAGCTTTGTATATAATTTGTCTCTGAGAGGCCCAAGAGGTGGCATGATTTTCTTCAGAAAAGATCCTGTCCTGGGAGTTGACTTAGAATCTGCAATTAATAATGCTGTGTTCCCAGGATTACAGGGTGGTCCTCATAATCATACAATTGGGGGACTTGCTGTCTGCTTGAAGCATGCTCAATCCCTGGAATTTAAGGACTATCAGAACAAGGGCATCGATGGGGCACGGGTGGAAAAGATTCTCGACATGGCCTCAATCACTCTCAACAAGAACTCAGTACCAGGTGACAAGAGTGCTCTAGTTCCAGGAGGCATCCGAATCGGATCGCCTGCCATGACCACCCGAGGATTCACTGAGAAGGAATTCATTGCAGTTGCAGACTTCATACATGAGGGCGTTAAGATAACTCTCGATGCCAAACCACTAGCCCCAGGATCAAAGCTTCAAGAGTTCCTCAAGTTTGTAGCAACCTCTGATTTCCCCTTGATCGACCGAGTTTCGGATCTTCGCTCGAGAGTTGAAGCTCTTACAACTCAATTCCCAATCCCTGGCTTGTAAGTCTCACTACACATAATGAAATGGGTATAAACTTGCAATAAAAATTCCGACAAAAAAAAGGTGACAAAGGTCCGAGGAAATGTCACTTGATCTTGATGATGTCGTGTTTGTGATGATTGTAGTAATAAAAATGGAAAAGACCAAGCAGTTTGTAACATTTTAGAAGCTGCTGTGAGGCTCTGGTAGGAACTATTTTTTAATTTTGTGTTCTTATTCTGTTGTAGTTGCTATGAATAGTTTTATTTTCAGAAAGAAATTTTTATGGGTAGTTTTGGATGTGTTCTCCGAAAAAGTGCTTATCTTATTTGACGAGGATTGGAGTCCTTTCGAGATGTGGTTTTACATTTCTGTCTATTTGTGTTTAATATGTTTTTAAACTTTCGTTTTTGTGTCGAAGCATGAGCTACGGGTTACTGATGACTCGAGGCTTTAGTGGTTTTCTTCTACATTCAATCTCAAAGAGCATCTTTC

Coding sequence (CDS)

ATGCAGGCTGCGAGTGGTGCCGCAGTGATGGGCTCTCTGCAAGTTGTTGTTTGTGCGAAGGGATCGTCTTTTCCTTCGAAAGGGTCTAGCATTTGTGTGTTTCCGCAACACAAGAAATGGACCGTCTTAAAGCCCTGCAAATCCTCTAGTGTTGAAGCAAACATGGTTGCGGGGAAGGCATCATCTTCTGTATCCGTCTCTGCTCCACAACTTGGAGGTGGAAGCGGTTTTGTAGACCATGGCTTGAGCGAAGCAGATCCCGATGTTCGAAGCATTATCGATAAAGAGAAGCAACGACAGTTTAAAAGCCTCGAACTCATTGCATCTGAGAATTTTACATCTAGGGCAGTTATGGAGGCAGTGGGGTCCTGCCTCACAAACAAGTACTCAGAAGGATTGCCTGGAAAAAGGTACTATGGTGGCAATGAACATATTGATGAGCTTGAAACACTCTGTCAACAAAGGGCTCTAGCAGCATTTCGTTTGGACAAGAACAAGTGGGGTGTAAATGTTCAACCATTATCTGGATCACCTGCTAACTTTGAGGTTTATACTGCAATTCTTAATCCACACGATCGAATCATGGGTTTGGACTTGCCTCATGGAGGACATTTGTCTCATGGGTTTATGACACCAAAGAGGCGGGTGTCAGGCACATCAATTTATTTTGAATCTATGCCTTATCGTCTTGACGAGACTACAGAACATATTAGCTTTGTATATAATTTGTCTCTGAGAGGCCCAAGAGGTGGCATGATTTTCTTCAGAAAAGATCCTGTCCTGGGAGTTGACTTAGAATCTGCAATTAATAATGCTGTGTTCCCAGGATTACAGGGTGGTCCTCATAATCATACAATTGGGGGACTTGCTGTCTGCTTGAAGCATGCTCAATCCCTGGAATTTAAGGACTATCAGAACAAGGGCATCGATGGGGCACGGGTGGAAAAGATTCTCGACATGGCCTCAATCACTCTCAACAAGAACTCAGTACCAGGTGACAAGAGTGCTCTAGTTCCAGGAGGCATCCGAATCGGATCGCCTGCCATGACCACCCGAGGATTCACTGAGAAGGAATTCATTGCAGTTGCAGACTTCATACATGAGGGCGTTAAGATAACTCTCGATGCCAAACCACTAGCCCCAGGATCAAAGCTTCAAGAGTTCCTCAAGTTTGTAGCAACCTCTGATTTCCCCTTGATCGACCGAGTTTCGGATCTTCGCTCGAGAGTTGAAGCTCTTACAACTCAATTCCCAATCCCTGGCTTGTAA

Protein sequence

MQAASGAAVMGSLQVVVCAKGSSFPSKGSSICVFPQHKKWTVLKPCKSSSVEANMVAGKASSSVSVSAPQLGGGSGFVDHGLSEADPDVRSIIDKEKQRQFKSLELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEHIDELETLCQQRALAAFRLDKNKWGVNVQPLSGSPANFEVYTAILNPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDETTEHISFVYNLSLRGPRGGMIFFRKDPVLGVDLESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSLEFKDYQNKGIDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFTEKEFIAVADFIHEGVKITLDAKPLAPGSKLQEFLKFVATSDFPLIDRVSDLRSRVEALTTQFPIPGL
Homology
[Close]
BLAST of Carg13128 vs. NCBI nr
Match: XP_022942709.1 (serine hydroxymethyltransferase 3, chloroplastic-like [Cucurbita moschata] >XP_022942710.1 serine hydroxymethyltransferase 3, chloroplastic-like [Cucurbita moschata])

HSP 1 Score: 776.2 bits (2003), Expect = 5.8e-221
Identity = 415/528 (78.60%), Postives = 417/528 (78.98%), Query Frame = 0 

Query: 1   MQAASGAAVMGSLQVVVCAKGSSFPSKGSSICVFPQHKKWTVLKPCKSSSVEANMVAGKA 60
           MQAASGAAVMGSLQVVVCAKGSSFPSKGSSICVFPQHKKWTVLKPCKSSSVEANMVAGKA
Sbjct: 1   MQAASGAAVMGSLQVVVCAKGSSFPSKGSSICVFPQHKKWTVLKPCKSSSVEANMVAGKA 60

Query: 61  SSSVSVSAPQLGGGSGFVDHGLSEADPDVRSIIDKEKQRQFKSLELIASENFTSRAVMEA 120
           SSSVSVSAPQLGGGSGFVDHGLSEADPDVRSIIDKEKQRQFKSLELIASENFTSRAVMEA
Sbjct: 61  SSSVSVSAPQLGGGSGFVDHGLSEADPDVRSIIDKEKQRQFKSLELIASENFTSRAVMEA 120

Query: 121 VGSCLTNKYSEGLPGKRYYGGNEHIDELETLCQQRALAAFRLDKNKWGVNVQPLSGSPAN 180
           VGSCLTNKYSEGLPGKRYYGGNEHIDELETLCQQRALAAFRLD NKWGVNVQPLSGSPAN
Sbjct: 121 VGSCLTNKYSEGLPGKRYYGGNEHIDELETLCQQRALAAFRLDNNKWGVNVQPLSGSPAN 180

Query: 181 FEVYTAILNPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDETT------ 240
           FEVYTAILNPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDETT      
Sbjct: 181 FEVYTAILNPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDETTGIVDYD 240

Query: 241 ---------------------------------------------EHIS----------- 300
                                                         HIS           
Sbjct: 241 MLEKTANLFRPKLIIAGASAYPRDFDYPRMRKIADAVGAFLMMDMAHISGLVAASVVADP 300

Query: 301 FVY--------NLSLRGPRGGMIFFRKDPVLGVDLESAINNAVFPGLQGGPHNHTIGGLA 360
           F Y        + SLRGPRGGMIFFRKDPVLGVDLESAINNAVFPGLQGGPHNHTIGGLA
Sbjct: 301 FEYCDIVTTTTHKSLRGPRGGMIFFRKDPVLGVDLESAINNAVFPGLQGGPHNHTIGGLA 360

Query: 361 VCLKHAQSLEFKDYQNK------------------------------------GIDGARV 420
           VCLKHAQS EFKDYQNK                                    GIDGARV
Sbjct: 361 VCLKHAQSPEFKDYQNKVVSNCRALASRLVELGYKLVSGGSDNHLVLVDLRPLGIDGARV 420

Query: 421 EKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFTEKEFIAVADFIHEGVKITL 423
           EKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFTEKEFIAVADFIHEGVKITL
Sbjct: 421 EKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFTEKEFIAVADFIHEGVKITL 480

[Close]
BLAST of Carg13128 vs. NCBI nr
Match: XP_023545608.1 (serine hydroxymethyltransferase 3, chloroplastic-like [Cucurbita pepo subsp. pepo] >XP_023545618.1 serine hydroxymethyltransferase 3, chloroplastic-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 776.2 bits (2003), Expect = 5.8e-221
Identity = 415/528 (78.60%), Postives = 417/528 (78.98%), Query Frame = 0 

Query: 1   MQAASGAAVMGSLQVVVCAKGSSFPSKGSSICVFPQHKKWTVLKPCKSSSVEANMVAGKA 60
           MQAASGAAVMGSLQVVVCAKGSSFPSKGSSICVFPQHKKWTVLKPCKSSSVEANMVAGKA
Sbjct: 1   MQAASGAAVMGSLQVVVCAKGSSFPSKGSSICVFPQHKKWTVLKPCKSSSVEANMVAGKA 60

Query: 61  SSSVSVSAPQLGGGSGFVDHGLSEADPDVRSIIDKEKQRQFKSLELIASENFTSRAVMEA 120
           SSSVSVSAPQLGGGSGFVDHGLSEADPDVRSIIDKEKQRQFKSLELIASENFTSRAVMEA
Sbjct: 61  SSSVSVSAPQLGGGSGFVDHGLSEADPDVRSIIDKEKQRQFKSLELIASENFTSRAVMEA 120

Query: 121 VGSCLTNKYSEGLPGKRYYGGNEHIDELETLCQQRALAAFRLDKNKWGVNVQPLSGSPAN 180
           VGSCLTNKYSEGLPGKRYYGGNEHIDELETLCQQRALAAFRLD +KWGVNVQPLSGSPAN
Sbjct: 121 VGSCLTNKYSEGLPGKRYYGGNEHIDELETLCQQRALAAFRLDNSKWGVNVQPLSGSPAN 180

Query: 181 FEVYTAILNPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDETT------ 240
           FEVYTAILNPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDETT      
Sbjct: 181 FEVYTAILNPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDETTGIVDYD 240

Query: 241 ---------------------------------------------EHIS----------- 300
                                                         HIS           
Sbjct: 241 MLEKTANLFQPKLIIAGASAYPRDFDYPRIRKIADAVGAFLMMDMAHISGLVAASVVADP 300

Query: 301 FVY--------NLSLRGPRGGMIFFRKDPVLGVDLESAINNAVFPGLQGGPHNHTIGGLA 360
           F Y        + SLRGPRGGMIFFRKDPVLGVDLESAINNAVFPGLQGGPHNHTIGGLA
Sbjct: 301 FEYCDIVTTTTHKSLRGPRGGMIFFRKDPVLGVDLESAINNAVFPGLQGGPHNHTIGGLA 360

Query: 361 VCLKHAQSLEFKDYQNK------------------------------------GIDGARV 420
           VCLKHAQS EFKDYQNK                                    GIDGARV
Sbjct: 361 VCLKHAQSPEFKDYQNKVVSNCRALASRLVELGYKLVSGGSDNHLVLVDLRPLGIDGARV 420

Query: 421 EKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFTEKEFIAVADFIHEGVKITL 423
           EKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFTEKEFIAVADFIHEGVKITL
Sbjct: 421 EKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFTEKEFIAVADFIHEGVKITL 480

[Close]
BLAST of Carg13128 vs. NCBI nr
Match: XP_022980294.1 (serine hydroxymethyltransferase 3, chloroplastic-like [Cucurbita maxima] >XP_022980300.1 serine hydroxymethyltransferase 3, chloroplastic-like [Cucurbita maxima])

HSP 1 Score: 771.9 bits (1992), Expect = 1.1e-219
Identity = 411/528 (77.84%), Postives = 415/528 (78.60%), Query Frame = 0 

Query: 1   MQAASGAAVMGSLQVVVCAKGSSFPSKGSSICVFPQHKKWTVLKPCKSSSVEANMVAGKA 60
           MQAASGAAVMGSLQVVVCAKGSSFPSKGSSICVFPQHKKW VLKPCKSSSVEANMVAGKA
Sbjct: 1   MQAASGAAVMGSLQVVVCAKGSSFPSKGSSICVFPQHKKWIVLKPCKSSSVEANMVAGKA 60

Query: 61  SSSVSVSAPQLGGGSGFVDHGLSEADPDVRSIIDKEKQRQFKSLELIASENFTSRAVMEA 120
           SSSVSVS+PQLGGGSGFVDHGLSEADPDVRSIIDKEKQRQFKSLELIASENFTSRAVMEA
Sbjct: 61  SSSVSVSSPQLGGGSGFVDHGLSEADPDVRSIIDKEKQRQFKSLELIASENFTSRAVMEA 120

Query: 121 VGSCLTNKYSEGLPGKRYYGGNEHIDELETLCQQRALAAFRLDKNKWGVNVQPLSGSPAN 180
           VGSCLTNKYSEGLPGKRYYGGNEHIDELETLCQQRALAAFRLDKNKWGVNVQPLSGSPAN
Sbjct: 121 VGSCLTNKYSEGLPGKRYYGGNEHIDELETLCQQRALAAFRLDKNKWGVNVQPLSGSPAN 180

Query: 181 FEVYTAILNPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDETT------ 240
           FEVYTAILNPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDETT      
Sbjct: 181 FEVYTAILNPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDETTGIVDYD 240

Query: 241 ---------------------------------------------EHISFVY-------- 300
                                                         HIS +         
Sbjct: 241 MLEKTANLFRPKLIIAGASAYPRDFDYPRMRKIADAVGAFLMMDMAHISGLVAASVVADP 300

Query: 301 -----------NLSLRGPRGGMIFFRKDPVLGVDLESAINNAVFPGLQGGPHNHTIGGLA 360
                      + SLRGPRGGMIFFRKDPVLGVDLESAINNAVFPGLQGGPHNHTIGGLA
Sbjct: 301 FEFCDIVTTTTHKSLRGPRGGMIFFRKDPVLGVDLESAINNAVFPGLQGGPHNHTIGGLA 360

Query: 361 VCLKHAQSLEFKDYQNK------------------------------------GIDGARV 420
           VCLKHAQS EFKDYQNK                                    GIDGARV
Sbjct: 361 VCLKHAQSPEFKDYQNKVVSNCRALASRLVELGYKLVSGGSDNHLVLVDLRPLGIDGARV 420

Query: 421 EKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFTEKEFIAVADFIHEGVKITL 423
           EKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFTEKEFIAVADFIHEGVKITL
Sbjct: 421 EKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFTEKEFIAVADFIHEGVKITL 480

[Close]
BLAST of Carg13128 vs. NCBI nr
Match: XP_011653260.1 (PREDICTED: serine hydroxymethyltransferase 3, chloroplastic [Cucumis sativus] >KGN53502.1 hypothetical protein Csa_4G062380 [Cucumis sativus])

HSP 1 Score: 724.2 bits (1868), Expect = 2.6e-205
Identity = 386/528 (73.11%), Postives = 396/528 (75.00%), Query Frame = 0 

Query: 1   MQAASGAAVMGSLQVVVCAKGSSFPSKGSSICVFPQHKKWTVLKPCKSSSVEANMVAGKA 60
           MQA SG AVMGSLQV VC KGS FPSK SSICVFPQ KK  +LKPCKS  VEA+MVAGK 
Sbjct: 1   MQATSGVAVMGSLQVAVCGKGSCFPSKSSSICVFPQQKKMNILKPCKSFKVEASMVAGKP 60

Query: 61  SSSVSVSAPQLGGGSGFVDHGLSEADPDVRSIIDKEKQRQFKSLELIASENFTSRAVMEA 120
           SSSVSV+ P++GG S FVDH LSE DP+VRSIIDKEKQRQFKSLELIASENFTSRAVMEA
Sbjct: 61  SSSVSVTVPEIGGVSNFVDHALSETDPEVRSIIDKEKQRQFKSLELIASENFTSRAVMEA 120

Query: 121 VGSCLTNKYSEGLPGKRYYGGNEHIDELETLCQQRALAAFRLDKNKWGVNVQPLSGSPAN 180
           VGSCLTNKYSEGLPGKRYYGGNEHIDELETLCQQRALAAF LD NKWGVNVQPLSGSPAN
Sbjct: 121 VGSCLTNKYSEGLPGKRYYGGNEHIDELETLCQQRALAAFHLDNNKWGVNVQPLSGSPAN 180

Query: 181 FEVYTAILNPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDETT------ 240
           FEVYTA+LNPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDETT      
Sbjct: 181 FEVYTAVLNPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDETTGIVDYD 240

Query: 241 ---------------------------------------------EHIS----------- 300
                                                         HIS           
Sbjct: 241 MLEKTANLFRPKLIIAGASAYPRDFDYPRMRKIADAVGAFLMMDMAHISGLVAASVVADP 300

Query: 301 FVY--------NLSLRGPRGGMIFFRKDPVLGVDLESAINNAVFPGLQGGPHNHTIGGLA 360
           F Y        + SLRGPRGGMIFFRKDPVLGVDLESAINNAVFPGLQGGPHNHTIGGLA
Sbjct: 301 FEYCDIVTTTTHKSLRGPRGGMIFFRKDPVLGVDLESAINNAVFPGLQGGPHNHTIGGLA 360

Query: 361 VCLKHAQSLEFKDYQNK------------------------------------GIDGARV 420
           VCLKHAQS EFK YQNK                                    GIDGARV
Sbjct: 361 VCLKHAQSPEFKVYQNKVIANCRALANRLVELGYKLVSGGSDNHLVLVDLRPLGIDGARV 420

Query: 421 EKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFTEKEFIAVADFIHEGVKITL 423
           EKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFTEKEF+AVADFIHEGVKITL
Sbjct: 421 EKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFTEKEFVAVADFIHEGVKITL 480

[Close]
BLAST of Carg13128 vs. NCBI nr
Match: XP_008451853.1 (PREDICTED: serine hydroxymethyltransferase 3, chloroplastic [Cucumis melo])

HSP 1 Score: 719.5 bits (1856), Expect = 6.4e-204
Identity = 385/528 (72.92%), Postives = 395/528 (74.81%), Query Frame = 0 

Query: 1   MQAASGAAVMGSLQVVVCAKGSSFPSKGSSICVFPQHKKWTVLKPCKSSSVEANMVAGKA 60
           MQA SGAAVMGSL+V VC KGS FPSK SSICVFPQHKK  +LKP KSS V+A+MV GK 
Sbjct: 1   MQATSGAAVMGSLEVAVCGKGSCFPSKSSSICVFPQHKKMNILKPSKSSKVKASMVVGKP 60

Query: 61  SSSVSVSAPQLGGGSGFVDHGLSEADPDVRSIIDKEKQRQFKSLELIASENFTSRAVMEA 120
           SSS SV+ P++GG S FVDH LSE DP+VRSIIDKEKQRQFKSLELIASENFTSRAVMEA
Sbjct: 61  SSSASVTVPEIGGVSHFVDHALSETDPEVRSIIDKEKQRQFKSLELIASENFTSRAVMEA 120

Query: 121 VGSCLTNKYSEGLPGKRYYGGNEHIDELETLCQQRALAAFRLDKNKWGVNVQPLSGSPAN 180
           VGSCLTNKYSEGLPGKRYYGGNEHIDELETLCQQRALAAF LD NKWGVNVQPLSGSPAN
Sbjct: 121 VGSCLTNKYSEGLPGKRYYGGNEHIDELETLCQQRALAAFHLDNNKWGVNVQPLSGSPAN 180

Query: 181 FEVYTAILNPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDETT------ 240
           FEVYTA+LNPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDETT      
Sbjct: 181 FEVYTAVLNPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDETTGIVDYD 240

Query: 241 ---------------------------------------------EHIS----------- 300
                                                         HIS           
Sbjct: 241 MLERTANLFRPKLIIAGASAYPRDFDYPRMRKIADAVGAFLMMDMAHISGLVAASVVADP 300

Query: 301 FVY--------NLSLRGPRGGMIFFRKDPVLGVDLESAINNAVFPGLQGGPHNHTIGGLA 360
           F Y        + SLRGPRGGMIFFRKDPVLGVDLESAINNAVFPGLQGGPHNHTIGGLA
Sbjct: 301 FEYCDIVTTTTHKSLRGPRGGMIFFRKDPVLGVDLESAINNAVFPGLQGGPHNHTIGGLA 360

Query: 361 VCLKHAQSLEFKDYQNK------------------------------------GIDGARV 420
           VCLKHAQS EFK YQNK                                    GIDGARV
Sbjct: 361 VCLKHAQSPEFKVYQNKVIANCRALASRLVELGYKLVSGGSDNHLVLVDLRPLGIDGARV 420

Query: 421 EKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFTEKEFIAVADFIHEGVKITL 423
           EKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFTEKEF AVADFIHEGVKITL
Sbjct: 421 EKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFTEKEFAAVADFIHEGVKITL 480

[Close]
BLAST of Carg13128 vs. TAIR10
Match: AT4G32520.1 (serine hydroxymethyltransferase 3)

HSP 1 Score: 570.1 bits (1468), Expect = 1.1e-162
Identity = 313/529 (59.17%), Postives = 353/529 (66.73%), Query Frame = 0 

Query: 1   MQAASGAAVMGSLQVVVCAKGSSFPSKGSSICVFPQHKKWTVLKPCKSSSVEANMVAGKA 60
           MQA  G   M SLQ     +GS FP     +  F Q  K+ + KP +SS ++ N+V+   
Sbjct: 1   MQACCGGNSMASLQQPGRVQGSVFPPIMPPVTKFSQQLKFNISKPFRSSFLKRNLVSEMR 60

Query: 61  SSSVSVSAPQLGGGS-GFVDHGLSEADPDVRSIIDKEKQRQFKSLELIASENFTSRAVME 120
           +SSVS+   ++      F D+GL E DP+VR+II KEK RQF+SLELIASENFTSRAVME
Sbjct: 61  ASSVSLPNVEISSKEIPFEDYGLGEVDPEVRTIITKEKDRQFRSLELIASENFTSRAVME 120

Query: 121 AVGSCLTNKYSEGLPGKRYYGGNEHIDELETLCQQRALAAFRLDKNKWGVNVQPLSGSPA 180
           AVGSCLTNKYSEGLPGKRYYGGNE+ID+LETLCQ RALAAFRLD  KWGVNVQPLSGSPA
Sbjct: 121 AVGSCLTNKYSEGLPGKRYYGGNEYIDQLETLCQNRALAAFRLDSTKWGVNVQPLSGSPA 180

Query: 181 NFEVYTAILNPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDETT----- 240
           NF VYTAIL+PHDRIMGLDLPHGGHLSHGFMT KRRVSGTSIYFESMPYRLDE+T     
Sbjct: 181 NFAVYTAILSPHDRIMGLDLPHGGHLSHGFMTAKRRVSGTSIYFESMPYRLDESTGIVDY 240

Query: 241 ----------------------------------------------EHIS---------- 300
                                                          HIS          
Sbjct: 241 DMLEKTATLFRPKLIIAGASAYSRDFDYPRMRKIADSVGAFLMMDMAHISGLVAASVVAD 300

Query: 301 -FVY--------NLSLRGPRGGMIFFRKDPVLGVDLESAINNAVFPGLQGGPHNHTIGGL 360
            F Y        + SLRGPRGGMIFFRKDP+ GVDLESA+NNAVFPGLQGGPHNHTIGGL
Sbjct: 301 PFEYCDIVTTTTHKSLRGPRGGMIFFRKDPINGVDLESAVNNAVFPGLQGGPHNHTIGGL 360

Query: 361 AVCLKHAQSLEFKDYQNK------------------------------------GIDGAR 420
           AVCLKHAQS EFK YQ +                                    G+DGAR
Sbjct: 361 AVCLKHAQSPEFKAYQKRVVSNCRALANRLVELGFKLVSGGSDNHLVLVDLRPMGMDGAR 420

Query: 421 VEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFTEKEFIAVADFIHEGVKIT 423
           VEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRG +EK+F+ VADFI EGV+IT
Sbjct: 421 VEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGLSEKDFVVVADFIKEGVEIT 480

[Close]
BLAST of Carg13128 vs. TAIR10
Match: AT4G37930.1 (serine transhydroxymethyltransferase 1)

HSP 1 Score: 381.3 bits (978), Expect = 7.6e-106
Identity = 209/454 (46.04%), Postives = 256/454 (56.39%), Query Frame = 0 

Query: 82  LSEADPDVRSIIDKEKQRQFKSLELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGG 141
           L E DP++  II+ EK RQ+K LELI SENFTS +VM+AVGS +TNKYSEG PG RYYGG
Sbjct: 55  LEEVDPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGG 114

Query: 142 NEHIDELETLCQQRALAAFRLDKNKWGVNVQPLSGSPANFEVYTAILNPHDRIMGLDLPH 201
           NE+ID  ETLCQ+RAL AFRLD  KWGVNVQPLSGSPANF VYTA+L PH+RIM LDLPH
Sbjct: 115 NEYIDMAETLCQKRALEAFRLDPEKWGVNVQPLSGSPANFHVYTALLKPHERIMALDLPH 174

Query: 202 GGHLSHGFMTPKRRVSGTSIYFESMPYRLDETTEHISF---------------------- 261
           GGHLSHG+ T  +++S  SI+FE+MPYRLDE+T +I +                      
Sbjct: 175 GGHLSHGYQTDTKKISAVSIFFETMPYRLDESTGYIDYDQMEKSATLFRPKLIVAGASAY 234

Query: 262 ------------------------------------------------VYNLSLRGPRGG 321
                                                             + SLRGPRG 
Sbjct: 235 ARLYDYARIRKVCNKQKAVMLADMAHISGLVAANVIPSPFDYADVVTTTTHKSLRGPRGA 294

Query: 322 MIFFRK--------DPVLGVDLESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSLEFKD 381
           MIFFRK           +  D E  IN AVFPGLQGGPHNHTI GLAV LK A + E+K 
Sbjct: 295 MIFFRKGVKEINKQGKEVLYDFEDKINQAVFPGLQGGPHNHTITGLAVALKQATTSEYKA 354

Query: 382 YQN------------------------------------KGIDGARVEKILDMASITLNK 422
           YQ                                     KGIDG+RVEK+L+   I  NK
Sbjct: 355 YQEQVLSNSAKFAQTLMERGYELVSGGTDNHLVLVNLKPKGIDGSRVEKVLEAVHIASNK 414

[Close]
BLAST of Carg13128 vs. TAIR10
Match: AT5G26780.3 (serine hydroxymethyltransferase 2)

HSP 1 Score: 370.2 bits (949), Expect = 1.7e-102
Identity = 217/514 (42.22%), Postives = 274/514 (53.31%), Query Frame = 0 

Query: 41  TVLKPCKSSSVEANMVAGKASSSVSVSAPQLGGGSGFV---DHGLSEADPDVRSIIDKEK 100
           +V KP    S     +   +S S +  A      S ++   +  L E DP+V  II+ EK
Sbjct: 11  SVKKPISLLSSNGGSLRFMSSLSTAAMAESEKSRSSWIKQLNASLDEIDPEVADIIELEK 70

Query: 101 QRQFKSLELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEHIDELETLCQQRAL 160
            RQ+K  ELI SENFTS +VM+AVGS +TNKYSEG PG RYYGGNE+ID  ETLCQ+RAL
Sbjct: 71  ARQWKGFELIPSENFTSLSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAETLCQKRAL 130

Query: 161 AAFRLDKNKWGVNVQPLSGSPANFEVYTAILNPHDRIMGLDLPHGGHLSHGFMTPKRRVS 220
            AF+LD +KWGVNVQ LSGSPANF+VYTA+L PH+RIM LDLPHGGHLSHG+ T  +++S
Sbjct: 131 EAFQLDPSKWGVNVQSLSGSPANFQVYTALLKPHERIMALDLPHGGHLSHGYQTDTKKIS 190

Query: 221 GTSIYFESMPYRLDETTEHISF-------------------------------------- 280
             SI+FE+MPYRLDE T +I +                                      
Sbjct: 191 AVSIFFETMPYRLDENTGYIDYDQLEKSAVLFRPKLIVAGASAYARLYDYARIRKVCNKQ 250

Query: 281 --------------------------------VYNLSLRGPRGGMIFFRK--------DP 340
                                             + SLRGPRG MIFFRK          
Sbjct: 251 KAVMLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRGAMIFFRKGLKEINKQGK 310

Query: 341 VLGVDLESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSLEFKDYQ-------------- 400
            +  D E  IN AVFPGLQGGPHNHTI GLAV LK A++ E+K YQ              
Sbjct: 311 EVMYDYEDRINQAVFPGLQGGPHNHTITGLAVALKQARTPEYKAYQDQVLRNCSKFAELD 370

Query: 401 --------------------------------------NKGIDGARVEKILDMASITLNK 422
                                                 NKGIDG+RVEK+L++  I  NK
Sbjct: 371 IRPTVIISYGLSMQTLLAKGYDLVSGGTDNHLVLVNLKNKGIDGSRVEKVLELVHIAANK 430

[Close]
BLAST of Carg13128 vs. TAIR10
Match: AT4G13930.1 (serine hydroxymethyltransferase 4)

HSP 1 Score: 336.7 bits (862), Expect = 2.1e-92
Identity = 192/463 (41.47%), Postives = 246/463 (53.13%), Query Frame = 0 

Query: 75  SGFVDHGLSEADPDVRSIIDKEKQRQFKSLELIASENFTSRAVMEAVGSCLTNKYSEGLP 134
           S + +  L   DP++  +I+KEK+RQ + +ELIASENFTS AV+EA+GS LTNKYSEG+P
Sbjct: 5   SSWGNTSLVSVDPEIHDLIEKEKRRQCRGIELIASENFTSFAVIEALGSALTNKYSEGIP 64

Query: 135 GKRYYGGNEHIDELETLCQQRALAAFRLDKNKWGVNVQPLSGSPANFEVYTAILNPHDRI 194
           G RYYGGNE IDE+E LC+ RAL AF  D   WGVNVQP SGSPANF  YTA+L PHDRI
Sbjct: 65  GNRYYGGNEFIDEIENLCRSRALEAFHCDPAAWGVNVQPYSGSPANFAAYTALLQPHDRI 124

Query: 195 MGLDLPHGGHLSHGFMTP-KRRVSGTSIYFESMPYRLDETTEHISF-------------- 254
           MGLDLP GGHL+HG+ T   +++S TSIYFES+PY+++ TT +I +              
Sbjct: 125 MGLDLPSGGHLTHGYYTSGGKKISATSIYFESLPYKVNFTTGYIDYDKLEEKALDFRPKL 184

Query: 255 --------------------------------------------------------VYNL 314
                                                                     + 
Sbjct: 185 LICGGSAYPRDWDYARFRAIADKVGALLLCDMAHISGLVAAQEAANPFEYCDVVTTTTHK 244

Query: 315 SLRGPRGGMIFFRKDPV---------LGVDLESAINNAVFPGLQGGPHNHTIGGLAVCLK 374
           SLRGPR GMIF+RK P             D E  IN AVFP LQGGPHNH IG LAV LK
Sbjct: 245 SLRGPRAGMIFYRKGPKPPKKGQPEGAVYDFEDKINFAVFPALQGGPHNHQIGALAVALK 304

Query: 375 HAQSLEFKDYQNK------------------------------------GIDGARVEKIL 422
            A +  FK Y  +                                    G+ G +VEK+ 
Sbjct: 305 QANTPGFKVYAKQVKANAVALGNYLMSKGYQIVTNGTENHLVLWDLRPLGLTGNKVEKLC 364

[Close]
BLAST of Carg13128 vs. TAIR10
Match: AT4G13890.1 (Pyridoxal phosphate (PLP)-dependent transferases superfamily protein)

HSP 1 Score: 327.8 bits (839), Expect = 9.9e-90
Identity = 183/456 (40.13%), Postives = 243/456 (53.29%), Query Frame = 0 

Query: 82  LSEADPDVRSIIDKEKQRQFKSLELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGG 141
           L   DP++  +I+KEK RQ + +ELIA+ENFTS AVMEA+GSCLTNKYSEG+PG RYYGG
Sbjct: 12  LDFVDPEIYDLIEKEKHRQCRGIELIAAENFTSVAVMEALGSCLTNKYSEGMPGNRYYGG 71

Query: 142 NEHIDELETLCQQRALAAFRLDKNKWGVNVQPLSGSPANFEVYTAILNPHDRIMGLDLPH 201
            E IDE+E+LC+ R+L AF  +  KWGVNVQP SGSPANF  YTA+L PHDRIMGLDLP 
Sbjct: 72  TEFIDEIESLCRSRSLEAFHCNPEKWGVNVQPYSGSPANFAAYTALLQPHDRIMGLDLPS 131

Query: 202 GGHLSHGFMTP-KRRVSGTSIYFESMPYRLDETTEHIS---------------------- 261
           GGH++HG+ +   + +S TSIYFE++PY++D  T +I                       
Sbjct: 132 GGHITHGYYSSGGKNISATSIYFENLPYKVDSKTGYIDYDKLEEKAMDFRPKLIICGGTS 191

Query: 262 ----------------------------------------FVY--------NLSLRGPRG 321
                                                   F Y        + SLRGPR 
Sbjct: 192 YPREWDYARFRAVADKVGAFLLCDMAHNSALVAAQEAADPFEYCDVVTTSTHKSLRGPRA 251

Query: 322 GMIFFRKDPVLG---------VDLESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSLEF 381
           GMIF+RK P             D ++ IN+AVFP LQ GPHN+ IG LAV LK   +  F
Sbjct: 252 GMIFYRKGPKPAKKGQPEGEVYDFDAKINSAVFPALQSGPHNNKIGALAVALKQVMAPSF 311

Query: 382 KDYQNK------------------------------------GIDGARVEKILDMASITL 422
           K Y  +                                    G+ G +VEK+ ++  ITL
Sbjct: 312 KVYAKQVKANAACLASYLINKGYTLVTDGTDNHLILWDLRPLGLTGNKVEKVCELCYITL 371

[Close]
BLAST of Carg13128 vs. Swiss-Prot
Match: sp|Q94JQ3|GLYP3_ARATH (Serine hydroxymethyltransferase 3, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=SHM3 PE=1 SV=2)

HSP 1 Score: 570.1 bits (1468), Expect = 2.1e-161
Identity = 313/529 (59.17%), Postives = 353/529 (66.73%), Query Frame = 0 

Query: 1   MQAASGAAVMGSLQVVVCAKGSSFPSKGSSICVFPQHKKWTVLKPCKSSSVEANMVAGKA 60
           MQA  G   M SLQ     +GS FP     +  F Q  K+ + KP +SS ++ N+V+   
Sbjct: 1   MQACCGGNSMASLQQPGRVQGSVFPPIMPPVTKFSQQLKFNISKPFRSSFLKRNLVSEMR 60

Query: 61  SSSVSVSAPQLGGGS-GFVDHGLSEADPDVRSIIDKEKQRQFKSLELIASENFTSRAVME 120
           +SSVS+   ++      F D+GL E DP+VR+II KEK RQF+SLELIASENFTSRAVME
Sbjct: 61  ASSVSLPNVEISSKEIPFEDYGLGEVDPEVRTIITKEKDRQFRSLELIASENFTSRAVME 120

Query: 121 AVGSCLTNKYSEGLPGKRYYGGNEHIDELETLCQQRALAAFRLDKNKWGVNVQPLSGSPA 180
           AVGSCLTNKYSEGLPGKRYYGGNE+ID+LETLCQ RALAAFRLD  KWGVNVQPLSGSPA
Sbjct: 121 AVGSCLTNKYSEGLPGKRYYGGNEYIDQLETLCQNRALAAFRLDSTKWGVNVQPLSGSPA 180

Query: 181 NFEVYTAILNPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDETT----- 240
           NF VYTAIL+PHDRIMGLDLPHGGHLSHGFMT KRRVSGTSIYFESMPYRLDE+T     
Sbjct: 181 NFAVYTAILSPHDRIMGLDLPHGGHLSHGFMTAKRRVSGTSIYFESMPYRLDESTGIVDY 240

Query: 241 ----------------------------------------------EHIS---------- 300
                                                          HIS          
Sbjct: 241 DMLEKTATLFRPKLIIAGASAYSRDFDYPRMRKIADSVGAFLMMDMAHISGLVAASVVAD 300

Query: 301 -FVY--------NLSLRGPRGGMIFFRKDPVLGVDLESAINNAVFPGLQGGPHNHTIGGL 360
            F Y        + SLRGPRGGMIFFRKDP+ GVDLESA+NNAVFPGLQGGPHNHTIGGL
Sbjct: 301 PFEYCDIVTTTTHKSLRGPRGGMIFFRKDPINGVDLESAVNNAVFPGLQGGPHNHTIGGL 360

Query: 361 AVCLKHAQSLEFKDYQNK------------------------------------GIDGAR 420
           AVCLKHAQS EFK YQ +                                    G+DGAR
Sbjct: 361 AVCLKHAQSPEFKAYQKRVVSNCRALANRLVELGFKLVSGGSDNHLVLVDLRPMGMDGAR 420

Query: 421 VEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFTEKEFIAVADFIHEGVKIT 423
           VEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRG +EK+F+ VADFI EGV+IT
Sbjct: 421 VEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGLSEKDFVVVADFIKEGVEIT 480

[Close]
BLAST of Carg13128 vs. Swiss-Prot
Match: sp|P34899|GLYM_PEA (Serine hydroxymethyltransferase, mitochondrial OS=Pisum sativum OX=3888 PE=1 SV=1)

HSP 1 Score: 382.5 bits (981), Expect = 6.1e-105
Identity = 207/454 (45.59%), Postives = 260/454 (57.27%), Query Frame = 0 

Query: 82  LSEADPDVRSIIDKEKQRQFKSLELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGG 141
           L   DP++  II+ EK RQ+K LELI SENFTS +VM+AVGS +TNKYSEG PG RYYGG
Sbjct: 56  LEVIDPEIADIIELEKARQWKGLELIPSENFTSLSVMQAVGSVMTNKYSEGYPGARYYGG 115

Query: 142 NEHIDELETLCQQRALAAFRLDKNKWGVNVQPLSGSPANFEVYTAILNPHDRIMGLDLPH 201
           NE+ID  ETLCQ+RAL AFRLD  KWGVNVQPLSGSP+NF+VYTA+L PHDRIM LDLPH
Sbjct: 116 NEYIDMAETLCQKRALEAFRLDPAKWGVNVQPLSGSPSNFQVYTALLKPHDRIMALDLPH 175

Query: 202 GGHLSHGFMTPKRRVSGTSIYFESMPYRLDETTEHISF---------------------- 261
           GGHLSHG+ T  +++S  SI+FE+MPYRLDE+T +I +                      
Sbjct: 176 GGHLSHGYQTDTKKISAVSIFFETMPYRLDESTGYIDYDQLEKSATLFRPKLIVAGASAY 235

Query: 262 ------------------------------------------------VYNLSLRGPRGG 321
                                                             + SLRGPRG 
Sbjct: 236 ARLYDYARIRKVCDKQKAVLLADMAHISGLVAAGVIPSPFDYADVVTTTTHKSLRGPRGA 295

Query: 322 MIFFRK--------DPVLGVDLESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSLEFKD 381
           MIFFRK           +  D E  IN AVFPGLQGGPHNHTI GLAV LK A + E++ 
Sbjct: 296 MIFFRKGLKEVNKQGKEVFYDYEDKINQAVFPGLQGGPHNHTITGLAVALKQATTPEYRA 355

Query: 382 YQ------------------------------------NKGIDGARVEKILDMASITLNK 422
           YQ                                    NKGIDG+RVEK+L++  I  NK
Sbjct: 356 YQEQVLSNSSKFAKALSEKGYDLVSGGTENHLVLVNLKNKGIDGSRVEKVLELVHIAANK 415

[Close]
BLAST of Carg13128 vs. Swiss-Prot
Match: sp|P50433|GLYM_SOLTU (Serine hydroxymethyltransferase, mitochondrial OS=Solanum tuberosum OX=4113 PE=2 SV=1)

HSP 1 Score: 382.1 bits (980), Expect = 8.0e-105
Identity = 209/454 (46.04%), Postives = 258/454 (56.83%), Query Frame = 0 

Query: 82  LSEADPDVRSIIDKEKQRQFKSLELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGG 141
           L   DP++  II+ EK RQ+K LELI SENFTS +VM+AVGS +TNKYSEG PG RYYGG
Sbjct: 56  LEVVDPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGG 115

Query: 142 NEHIDELETLCQQRALAAFRLDKNKWGVNVQPLSGSPANFEVYTAILNPHDRIMGLDLPH 201
           NE+ID  ETLCQ+RAL AFRLD  KWGVNVQPLSGSPANF+VYTA+L PH+RIM LDLPH
Sbjct: 116 NEYIDMAETLCQKRALEAFRLDPAKWGVNVQPLSGSPANFQVYTALLKPHERIMALDLPH 175

Query: 202 GGHLSHGFMTPKRRVSGTSIYFESMPYRLDETTEHISF---------------------- 261
           GGHLSHG+ T  +++S  SI+FE+MPYRLDE+T +I +                      
Sbjct: 176 GGHLSHGYQTDTKKISAVSIFFETMPYRLDESTGYIDYDQLEKSATLFRPKLIVAGASAY 235

Query: 262 ------------------------------------------------VYNLSLRGPRGG 321
                                                             + SLRGPRG 
Sbjct: 236 ARLYDYDRIRKVCNKQKAILLADMAHISGLVAAGVIPSPFDYADVVTTTTHKSLRGPRGA 295

Query: 322 MIFFRK--------DPVLGVDLESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSLEFKD 381
           MIF+RK           +  D E  IN AVFPGLQGGPHNHTI GLAV LK A + E++ 
Sbjct: 296 MIFYRKGVKEVNKQGKEVFYDYEDKINQAVFPGLQGGPHNHTITGLAVALKQATTPEYRA 355

Query: 382 YQ------------------------------------NKGIDGARVEKILDMASITLNK 422
           YQ                                    NKGIDG+RVEK+L+   I  NK
Sbjct: 356 YQEQVLSNSSKFAQALGEKGYELVSGGTDNHLVLVNMKNKGIDGSRVEKVLEAVHIAANK 415

[Close]
BLAST of Carg13128 vs. Swiss-Prot
Match: sp|Q9SZJ5|GLYM1_ARATH (Serine hydroxymethyltransferase 1, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=SHM1 PE=1 SV=1)

HSP 1 Score: 381.3 bits (978), Expect = 1.4e-104
Identity = 209/454 (46.04%), Postives = 256/454 (56.39%), Query Frame = 0 

Query: 82  LSEADPDVRSIIDKEKQRQFKSLELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGG 141
           L E DP++  II+ EK RQ+K LELI SENFTS +VM+AVGS +TNKYSEG PG RYYGG
Sbjct: 55  LEEVDPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGG 114

Query: 142 NEHIDELETLCQQRALAAFRLDKNKWGVNVQPLSGSPANFEVYTAILNPHDRIMGLDLPH 201
           NE+ID  ETLCQ+RAL AFRLD  KWGVNVQPLSGSPANF VYTA+L PH+RIM LDLPH
Sbjct: 115 NEYIDMAETLCQKRALEAFRLDPEKWGVNVQPLSGSPANFHVYTALLKPHERIMALDLPH 174

Query: 202 GGHLSHGFMTPKRRVSGTSIYFESMPYRLDETTEHISF---------------------- 261
           GGHLSHG+ T  +++S  SI+FE+MPYRLDE+T +I +                      
Sbjct: 175 GGHLSHGYQTDTKKISAVSIFFETMPYRLDESTGYIDYDQMEKSATLFRPKLIVAGASAY 234

Query: 262 ------------------------------------------------VYNLSLRGPRGG 321
                                                             + SLRGPRG 
Sbjct: 235 ARLYDYARIRKVCNKQKAVMLADMAHISGLVAANVIPSPFDYADVVTTTTHKSLRGPRGA 294

Query: 322 MIFFRK--------DPVLGVDLESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSLEFKD 381
           MIFFRK           +  D E  IN AVFPGLQGGPHNHTI GLAV LK A + E+K 
Sbjct: 295 MIFFRKGVKEINKQGKEVLYDFEDKINQAVFPGLQGGPHNHTITGLAVALKQATTSEYKA 354

Query: 382 YQN------------------------------------KGIDGARVEKILDMASITLNK 422
           YQ                                     KGIDG+RVEK+L+   I  NK
Sbjct: 355 YQEQVLSNSAKFAQTLMERGYELVSGGTDNHLVLVNLKPKGIDGSRVEKVLEAVHIASNK 414

[Close]
BLAST of Carg13128 vs. Swiss-Prot
Match: sp|Q94C74|GLYM2_ARATH (Serine hydroxymethyltransferase 2, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=SHM2 PE=1 SV=2)

HSP 1 Score: 376.3 bits (965), Expect = 4.4e-103
Identity = 217/498 (43.57%), Postives = 274/498 (55.02%), Query Frame = 0 

Query: 41  TVLKPCKSSSVEANMVAGKASSSVSVSAPQLGGGSGFV---DHGLSEADPDVRSIIDKEK 100
           +V KP    S     +   +S S +  A      S ++   +  L E DP+V  II+ EK
Sbjct: 11  SVKKPISLLSSNGGSLRFMSSLSTAAMAESEKSRSSWIKQLNASLDEIDPEVADIIELEK 70

Query: 101 QRQFKSLELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEHIDELETLCQQRAL 160
            RQ+K  ELI SENFTS +VM+AVGS +TNKYSEG PG RYYGGNE+ID  ETLCQ+RAL
Sbjct: 71  ARQWKGFELIPSENFTSLSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAETLCQKRAL 130

Query: 161 AAFRLDKNKWGVNVQPLSGSPANFEVYTAILNPHDRIMGLDLPHGGHLSHGFMTPKRRVS 220
            AF+LD +KWGVNVQ LSGSPANF+VYTA+L PH+RIM LDLPHGGHLSHG+ T  +++S
Sbjct: 131 EAFQLDPSKWGVNVQSLSGSPANFQVYTALLKPHERIMALDLPHGGHLSHGYQTDTKKIS 190

Query: 221 GTSIYFESMPYRLDETTEHISF-------------------------------------- 280
             SI+FE+MPYRLDE T +I +                                      
Sbjct: 191 AVSIFFETMPYRLDENTGYIDYDQLEKSAVLFRPKLIVAGASAYARLYDYARIRKVCNKQ 250

Query: 281 --------------------------------VYNLSLRGPRGGMIFFRK--------DP 340
                                             + SLRGPRG MIFFRK          
Sbjct: 251 KAVMLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRGAMIFFRKGLKEINKQGK 310

Query: 341 VLGVDLESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSLEFKDYQ-------------- 400
            +  D E  IN AVFPGLQGGPHNHTI GLAV LK A++ E+K YQ              
Sbjct: 311 EVMYDYEDRINQAVFPGLQGGPHNHTITGLAVALKQARTPEYKAYQDQVLRNCSKFAETL 370

Query: 401 ----------------------NKGIDGARVEKILDMASITLNKNSVPGDKSALVPGGIR 422
                                 NKGIDG+RVEK+L++  I  NKN+VPGD SA+VPGGIR
Sbjct: 371 LAKGYDLVSGGTDNHLVLVNLKNKGIDGSRVEKVLELVHIAANKNTVPGDVSAMVPGGIR 430

[Close]
BLAST of Carg13128 vs. TrEMBL
Match: tr|A0A0A0KYS6|A0A0A0KYS6_CUCSA (Serine hydroxymethyltransferase OS=Cucumis sativus OX=3659 GN=Csa_4G062380 PE=3 SV=1)

HSP 1 Score: 724.2 bits (1868), Expect = 1.7e-205
Identity = 386/528 (73.11%), Postives = 396/528 (75.00%), Query Frame = 0 

Query: 1   MQAASGAAVMGSLQVVVCAKGSSFPSKGSSICVFPQHKKWTVLKPCKSSSVEANMVAGKA 60
           MQA SG AVMGSLQV VC KGS FPSK SSICVFPQ KK  +LKPCKS  VEA+MVAGK 
Sbjct: 1   MQATSGVAVMGSLQVAVCGKGSCFPSKSSSICVFPQQKKMNILKPCKSFKVEASMVAGKP 60

Query: 61  SSSVSVSAPQLGGGSGFVDHGLSEADPDVRSIIDKEKQRQFKSLELIASENFTSRAVMEA 120
           SSSVSV+ P++GG S FVDH LSE DP+VRSIIDKEKQRQFKSLELIASENFTSRAVMEA
Sbjct: 61  SSSVSVTVPEIGGVSNFVDHALSETDPEVRSIIDKEKQRQFKSLELIASENFTSRAVMEA 120

Query: 121 VGSCLTNKYSEGLPGKRYYGGNEHIDELETLCQQRALAAFRLDKNKWGVNVQPLSGSPAN 180
           VGSCLTNKYSEGLPGKRYYGGNEHIDELETLCQQRALAAF LD NKWGVNVQPLSGSPAN
Sbjct: 121 VGSCLTNKYSEGLPGKRYYGGNEHIDELETLCQQRALAAFHLDNNKWGVNVQPLSGSPAN 180

Query: 181 FEVYTAILNPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDETT------ 240
           FEVYTA+LNPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDETT      
Sbjct: 181 FEVYTAVLNPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDETTGIVDYD 240

Query: 241 ---------------------------------------------EHIS----------- 300
                                                         HIS           
Sbjct: 241 MLEKTANLFRPKLIIAGASAYPRDFDYPRMRKIADAVGAFLMMDMAHISGLVAASVVADP 300

Query: 301 FVY--------NLSLRGPRGGMIFFRKDPVLGVDLESAINNAVFPGLQGGPHNHTIGGLA 360
           F Y        + SLRGPRGGMIFFRKDPVLGVDLESAINNAVFPGLQGGPHNHTIGGLA
Sbjct: 301 FEYCDIVTTTTHKSLRGPRGGMIFFRKDPVLGVDLESAINNAVFPGLQGGPHNHTIGGLA 360

Query: 361 VCLKHAQSLEFKDYQNK------------------------------------GIDGARV 420
           VCLKHAQS EFK YQNK                                    GIDGARV
Sbjct: 361 VCLKHAQSPEFKVYQNKVIANCRALANRLVELGYKLVSGGSDNHLVLVDLRPLGIDGARV 420

Query: 421 EKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFTEKEFIAVADFIHEGVKITL 423
           EKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFTEKEF+AVADFIHEGVKITL
Sbjct: 421 EKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFTEKEFVAVADFIHEGVKITL 480

[Close]
BLAST of Carg13128 vs. TrEMBL
Match: tr|A0A1S3BSI5|A0A1S3BSI5_CUCME (Serine hydroxymethyltransferase OS=Cucumis melo OX=3656 GN=LOC103493017 PE=3 SV=1)

HSP 1 Score: 719.5 bits (1856), Expect = 4.3e-204
Identity = 385/528 (72.92%), Postives = 395/528 (74.81%), Query Frame = 0 

Query: 1   MQAASGAAVMGSLQVVVCAKGSSFPSKGSSICVFPQHKKWTVLKPCKSSSVEANMVAGKA 60
           MQA SGAAVMGSL+V VC KGS FPSK SSICVFPQHKK  +LKP KSS V+A+MV GK 
Sbjct: 1   MQATSGAAVMGSLEVAVCGKGSCFPSKSSSICVFPQHKKMNILKPSKSSKVKASMVVGKP 60

Query: 61  SSSVSVSAPQLGGGSGFVDHGLSEADPDVRSIIDKEKQRQFKSLELIASENFTSRAVMEA 120
           SSS SV+ P++GG S FVDH LSE DP+VRSIIDKEKQRQFKSLELIASENFTSRAVMEA
Sbjct: 61  SSSASVTVPEIGGVSHFVDHALSETDPEVRSIIDKEKQRQFKSLELIASENFTSRAVMEA 120

Query: 121 VGSCLTNKYSEGLPGKRYYGGNEHIDELETLCQQRALAAFRLDKNKWGVNVQPLSGSPAN 180
           VGSCLTNKYSEGLPGKRYYGGNEHIDELETLCQQRALAAF LD NKWGVNVQPLSGSPAN
Sbjct: 121 VGSCLTNKYSEGLPGKRYYGGNEHIDELETLCQQRALAAFHLDNNKWGVNVQPLSGSPAN 180

Query: 181 FEVYTAILNPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDETT------ 240
           FEVYTA+LNPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDETT      
Sbjct: 181 FEVYTAVLNPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDETTGIVDYD 240

Query: 241 ---------------------------------------------EHIS----------- 300
                                                         HIS           
Sbjct: 241 MLERTANLFRPKLIIAGASAYPRDFDYPRMRKIADAVGAFLMMDMAHISGLVAASVVADP 300

Query: 301 FVY--------NLSLRGPRGGMIFFRKDPVLGVDLESAINNAVFPGLQGGPHNHTIGGLA 360
           F Y        + SLRGPRGGMIFFRKDPVLGVDLESAINNAVFPGLQGGPHNHTIGGLA
Sbjct: 301 FEYCDIVTTTTHKSLRGPRGGMIFFRKDPVLGVDLESAINNAVFPGLQGGPHNHTIGGLA 360

Query: 361 VCLKHAQSLEFKDYQNK------------------------------------GIDGARV 420
           VCLKHAQS EFK YQNK                                    GIDGARV
Sbjct: 361 VCLKHAQSPEFKVYQNKVIANCRALASRLVELGYKLVSGGSDNHLVLVDLRPLGIDGARV 420

Query: 421 EKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFTEKEFIAVADFIHEGVKITL 423
           EKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFTEKEF AVADFIHEGVKITL
Sbjct: 421 EKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFTEKEFAAVADFIHEGVKITL 480

[Close]
BLAST of Carg13128 vs. TrEMBL
Match: tr|A0A2N9F760|A0A2N9F760_FAGSY (Serine hydroxymethyltransferase OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS10874 PE=3 SV=1)

HSP 1 Score: 650.6 bits (1677), Expect = 2.4e-183
Identity = 349/529 (65.97%), Postives = 384/529 (72.59%), Query Frame = 0 

Query: 1    MQAASGAAVMGSLQVVVCAKGSSFPSKGSSICVFPQHKKWTVLKPCKSSSVEANMVAGKA 60
            MQA SGAAVMGSLQ  +  KGS+FP KGSS+  FP   + ++LKPC+ SSVE ++V G  
Sbjct: 475  MQACSGAAVMGSLQQPIWIKGSNFPPKGSSVIGFPHQGRLSLLKPCR-SSVEGSLVTGGL 534

Query: 61   SSSVSVSAPQLGG-GSGFVDHGLSEADPDVRSIIDKEKQRQFKSLELIASENFTSRAVME 120
             SSVSV  P++GG GS F+D+GL+EADP+VR+IIDKEK+RQFKSLELIASENFTSRAVME
Sbjct: 535  PSSVSVPVPEIGGSGSSFLDYGLTEADPEVRTIIDKEKERQFKSLELIASENFTSRAVME 594

Query: 121  AVGSCLTNKYSEGLPGKRYYGGNEHIDELETLCQQRALAAFRLDKNKWGVNVQPLSGSPA 180
            AVGSCLTNKYSEGLPGKRYYGGNEHIDELE LCQQRALAAF LD  KWGVNVQPLSGSPA
Sbjct: 595  AVGSCLTNKYSEGLPGKRYYGGNEHIDELEILCQQRALAAFHLDGKKWGVNVQPLSGSPA 654

Query: 181  NFEVYTAILNPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDETT----- 240
            NFEVYTA+L PHDRIMGLDLPHGGHLSHGFMT KRRVSGTSIYFESMPYRLDE+T     
Sbjct: 655  NFEVYTAVLKPHDRIMGLDLPHGGHLSHGFMTAKRRVSGTSIYFESMPYRLDESTGIVDY 714

Query: 241  ----------------------------------------------EHIS---------- 300
                                                           HIS          
Sbjct: 715  DMLEKTAVLFRPKLIIAGASAYPRDFDYARMRKIADAVGAFLMMDMAHISGLVATSVVAD 774

Query: 301  -FVY--------NLSLRGPRGGMIFFRKDPVLGVDLESAINNAVFPGLQGGPHNHTIGGL 360
             F Y        + SLRGPRGGMIFF+KDPVLGVDLESAINNAVFPGLQGGPHNHTIGGL
Sbjct: 775  PFEYCDIVTTTTHKSLRGPRGGMIFFKKDPVLGVDLESAINNAVFPGLQGGPHNHTIGGL 834

Query: 361  AVCLKHAQSLEFKDYQNK------------------------------------GIDGAR 420
            AVCLK+AQS EFK YQNK                                    GIDGAR
Sbjct: 835  AVCLKYAQSPEFKAYQNKVVSNCRALASRLTELGYTLVSGGSDNHLVLVDLRPLGIDGAR 894

Query: 421  VEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFTEKEFIAVADFIHEGVKIT 423
             EKILD+ASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFTEK+F+A+ADFIHEGVKIT
Sbjct: 895  AEKILDLASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFTEKDFVAIADFIHEGVKIT 954

[Close]
BLAST of Carg13128 vs. TrEMBL
Match: tr|A0A2R6PHE0|A0A2R6PHE0_ACTCH (Serine hydroxymethyltransferase OS=Actinidia chinensis var. chinensis OX=1590841 GN=CEY00_Acc28646 PE=3 SV=1)

HSP 1 Score: 644.0 bits (1660), Expect = 2.3e-181
Identity = 347/529 (65.60%), Postives = 380/529 (71.83%), Query Frame = 0 

Query: 1   MQAASGAAVMGSLQVVVCAKGSSFPSKGSSICVFPQHKKWTVLKPCKSSSVEANMVAGKA 60
           M A SGAAVMGS+Q  +  KGS+F  KG S   FP   K ++++PC+SS +E ++V G+ 
Sbjct: 1   MHACSGAAVMGSIQQPLWMKGSAFSLKGPSFNGFPHQFKLSLVEPCRSSQLEGSLVTGRP 60

Query: 61  SSSVSVSAPQLGG-GSGFVDHGLSEADPDVRSIIDKEKQRQFKSLELIASENFTSRAVME 120
            +SVSVSAP++GG GS FVDHGL EAD +VRSIIDKEKQRQFKSLELIASENFTSRAVME
Sbjct: 61  PTSVSVSAPEIGGFGSSFVDHGLGEADAEVRSIIDKEKQRQFKSLELIASENFTSRAVME 120

Query: 121 AVGSCLTNKYSEGLPGKRYYGGNEHIDELETLCQQRALAAFRLDKNKWGVNVQPLSGSPA 180
           AVGSCLTNKYSEGLPGKRYYGGNEHIDELETLCQ+RALAAF LD  KWGVNVQPLSGSPA
Sbjct: 121 AVGSCLTNKYSEGLPGKRYYGGNEHIDELETLCQERALAAFHLDGKKWGVNVQPLSGSPA 180

Query: 181 NFEVYTAILNPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDETT----- 240
           NFEVYTA+LNPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRL+E+T     
Sbjct: 181 NFEVYTALLNPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLNESTGIVDY 240

Query: 241 ----------------------------------------------EHIS---------- 300
                                                          HIS          
Sbjct: 241 DMLEKTAILFRPKLIIAGASAYPRDFDYSRMRKIADAVGAFLMMDMAHISGLVAASVVAD 300

Query: 301 -FVY--------NLSLRGPRGGMIFFRKDPVLGVDLESAINNAVFPGLQGGPHNHTIGGL 360
            F Y        + SLRGPRGGMIFF+++ VLGVDLESAINNAVFPGLQGGPHNHTIGGL
Sbjct: 301 PFEYCDVVTTTTHKSLRGPRGGMIFFKRESVLGVDLESAINNAVFPGLQGGPHNHTIGGL 360

Query: 361 AVCLKHAQSLEFKDYQNK------------------------------------GIDGAR 420
           AVCLKHAQS EF+ YQNK                                    GIDGAR
Sbjct: 361 AVCLKHAQSPEFRAYQNKVVSNCRALASRLIELGYNLVSGGSDNHLVLVDLRPLGIDGAR 420

Query: 421 VEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFTEKEFIAVADFIHEGVKIT 423
           VEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFTEKEF+A ADFIHEGV+IT
Sbjct: 421 VEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFTEKEFMATADFIHEGVQIT 480

[Close]
BLAST of Carg13128 vs. TrEMBL
Match: tr|A0A2P5D4U9|A0A2P5D4U9_9ROSA (Serine hydroxymethyltransferase OS=Trema orientalis OX=63057 GN=TorRG33x02_262400 PE=3 SV=1)

HSP 1 Score: 639.8 bits (1649), Expect = 4.3e-180
Identity = 350/530 (66.04%), Postives = 379/530 (71.51%), Query Frame = 0 

Query: 1   MQAASGAAVMGSLQVVVCAKGSSFPSKGSSICVFP-QHKKWTVLKPCKSSSVEANMVAGK 60
           MQA +GAA+ GSLQ  + +KG++FP KG +I  FP Q K +  LKPC+ S VE ++V G+
Sbjct: 1   MQACNGAALTGSLQQPLWSKGTAFPPKGFAINGFPHQIKLYDSLKPCRVSHVEGSLVTGR 60

Query: 61  ASSSVSVSAPQL-GGGSGFVDHGLSEADPDVRSIIDKEKQRQFKSLELIASENFTSRAVM 120
             SSVSV APQL G GS FVD+GLSEADP+VR I+DKEKQRQFKSLELIASENFT RAVM
Sbjct: 61  PPSSVSVPAPQLTGDGSSFVDYGLSEADPEVREIVDKEKQRQFKSLELIASENFTYRAVM 120

Query: 121 EAVGSCLTNKYSEGLPGKRYYGGNEHIDELETLCQQRALAAFRLDKNKWGVNVQPLSGSP 180
           EAVGSCLTNKYSEGLPGKRYYGGNE IDELE LCQ+RAL AF LD  KWGVNVQPLSGSP
Sbjct: 121 EAVGSCLTNKYSEGLPGKRYYGGNEFIDELEILCQKRALDAFHLDSEKWGVNVQPLSGSP 180

Query: 181 ANFEVYTAILNPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDETT---- 240
           ANFEVYTA+LNPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDE+T    
Sbjct: 181 ANFEVYTAVLNPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVD 240

Query: 241 -----------------------------------------------EHIS--------- 300
                                                           HIS         
Sbjct: 241 YDMLEKTATLFRPKLIIAGASAYPRDFDYPRMRKIADSVGAFLMMDMAHISGLVAASVVA 300

Query: 301 --FVY--------NLSLRGPRGGMIFFRKDPVLGVDLESAINNAVFPGLQGGPHNHTIGG 360
             F Y        + SLRGPRGGMIFFRKDPVLGVDLESAINNAVFPGLQGGPHNHTIGG
Sbjct: 301 DPFEYCDIVTTTTHKSLRGPRGGMIFFRKDPVLGVDLESAINNAVFPGLQGGPHNHTIGG 360

Query: 361 LAVCLKHAQSLEFKDYQNK------------------------------------GIDGA 420
           LAVCLK+AQS EFK YQ                                      G+DGA
Sbjct: 361 LAVCLKYAQSPEFKAYQKNVVSNCRALASRLMELGYKLVSGGSDNHLVLVDLRPLGLDGA 420

Query: 421 RVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFTEKEFIAVADFIHEGVKI 423
           RVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFTEKEFIA+ADFIHEGV+I
Sbjct: 421 RVEKILDMASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFTEKEFIAIADFIHEGVEI 480

The following BLAST results are available for this feature:
BLAST of Carg13128 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022942709.15.8e-22178.60serine hydroxymethyltransferase 3, chloroplastic-like [Cucurbita moschata] >XP_0... [more]
XP_023545608.15.8e-22178.60serine hydroxymethyltransferase 3, chloroplastic-like [Cucurbita pepo subsp. pep... [more]
XP_022980294.11.1e-21977.84serine hydroxymethyltransferase 3, chloroplastic-like [Cucurbita maxima] >XP_022... [more]
XP_011653260.12.6e-20573.11PREDICTED: serine hydroxymethyltransferase 3, chloroplastic [Cucumis sativus] >K... [more]
XP_008451853.16.4e-20472.92PREDICTED: serine hydroxymethyltransferase 3, chloroplastic [Cucumis melo][more]
BLAST of Carg13128 vs. TAIR10
Match NameE-valueIdentityDescription
AT4G32520.11.1e-16259.17serine hydroxymethyltransferase 3[more]
AT4G37930.17.6e-10646.04serine transhydroxymethyltransferase 1[more]
AT5G26780.31.7e-10242.22serine hydroxymethyltransferase 2[more]
AT4G13930.12.1e-9241.47serine hydroxymethyltransferase 4[more]
AT4G13890.19.9e-9040.13Pyridoxal phosphate (PLP)-dependent transferases superfamily protein[more]
BLAST of Carg13128 vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|Q94JQ3|GLYP3_ARATH2.1e-16159.17Serine hydroxymethyltransferase 3, chloroplastic OS=Arabidopsis thaliana OX=3702... [more]
sp|P34899|GLYM_PEA6.1e-10545.59Serine hydroxymethyltransferase, mitochondrial OS=Pisum sativum OX=3888 PE=1 SV=... [more]
sp|P50433|GLYM_SOLTU8.0e-10546.04Serine hydroxymethyltransferase, mitochondrial OS=Solanum tuberosum OX=4113 PE=2... [more]
sp|Q9SZJ5|GLYM1_ARATH1.4e-10446.04Serine hydroxymethyltransferase 1, mitochondrial OS=Arabidopsis thaliana OX=3702... [more]
sp|Q94C74|GLYM2_ARATH4.4e-10343.57Serine hydroxymethyltransferase 2, mitochondrial OS=Arabidopsis thaliana OX=3702... [more]
BLAST of Carg13128 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0KYS6|A0A0A0KYS6_CUCSA1.7e-20573.11Serine hydroxymethyltransferase OS=Cucumis sativus OX=3659 GN=Csa_4G062380 PE=3 ... [more]
tr|A0A1S3BSI5|A0A1S3BSI5_CUCME4.3e-20472.92Serine hydroxymethyltransferase OS=Cucumis melo OX=3656 GN=LOC103493017 PE=3 SV=... [more]
tr|A0A2N9F760|A0A2N9F760_FAGSY2.4e-18365.97Serine hydroxymethyltransferase OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS10874 PE... [more]
tr|A0A2R6PHE0|A0A2R6PHE0_ACTCH2.3e-18165.60Serine hydroxymethyltransferase OS=Actinidia chinensis var. chinensis OX=1590841... [more]
tr|A0A2P5D4U9|A0A2P5D4U9_9ROSA4.3e-18066.04Serine hydroxymethyltransferase OS=Trema orientalis OX=63057 GN=TorRG33x02_26240... [more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0035999tetrahydrofolate interconversion
GO:0019264glycine biosynthetic process from serine
Vocabulary: Molecular Function
TermDefinition
GO:0030170pyridoxal phosphate binding
GO:0004372glycine hydroxymethyltransferase activity
GO:0003824catalytic activity
Vocabulary: INTERPRO
TermDefinition
IPR015424PyrdxlP-dep_Trfase
IPR001085Ser_HO-MeTrfase
IPR015422PyrdxlP-dep_Trfase_dom1
IPR015421PyrdxlP-dep_Trfase_major
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0019264 glycine biosynthetic process from serine
biological_process GO:0035999 tetrahydrofolate interconversion
cellular_component GO:0005575 cellular_component
molecular_function GO:0004372 glycine hydroxymethyltransferase activity
molecular_function GO:0030170 pyridoxal phosphate binding
molecular_function GO:0003824 catalytic activity
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg13128-RACarg13128-RAmRNA


InterPro
Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR015421Pyridoxal phosphate-dependent transferase, major domainGENE3DG3DSA:3.40.640.10coord: 111..239
e-value: 2.6E-79
score: 268.7
IPR015421Pyridoxal phosphate-dependent transferase, major domainGENE3DG3DSA:3.40.640.10coord: 244..302
e-value: 5.2E-23
score: 83.0
NoneNo IPR availablePFAMPF00464SHMTcoord: 303..366
e-value: 3.0E-21
score: 75.4
coord: 82..239
e-value: 1.8E-74
score: 250.6
NoneNo IPR availablePANTHERPTHR11680:SF20SERINE HYDROXYMETHYLTRANSFERASE 3, CHLOROPLASTICcoord: 307..422
coord: 244..307
NoneNo IPR availablePANTHERPTHR11680SERINE HYDROXYMETHYLTRANSFERASEcoord: 35..238
NoneNo IPR availablePANTHERPTHR11680:SF20SERINE HYDROXYMETHYLTRANSFERASE 3, CHLOROPLASTICcoord: 35..238
NoneNo IPR availablePANTHERPTHR11680SERINE HYDROXYMETHYLTRANSFERASEcoord: 307..422
coord: 244..307
IPR015422Pyridoxal phosphate-dependent transferase domain 1GENE3DG3DSA:3.90.1150.10coord: 303..422
e-value: 2.8E-39
score: 136.4
coord: 86..110
e-value: 2.6E-79
score: 268.7
IPR001085Serine hydroxymethyltransferasePIRSFPIRSF000412SHMTcoord: 76..240
e-value: 4.5E-60
score: 201.1
coord: 303..422
e-value: 5.6E-22
score: 75.5
coord: 242..307
e-value: 1.1E-18
score: 64.7
IPR001085Serine hydroxymethyltransferaseCDDcd00378SHMTcoord: 84..380
e-value: 5.0768E-137
score: 400.81
IPR015424Pyridoxal phosphate-dependent transferaseSUPERFAMILYSSF53383PLP-dependent transferasescoord: 80..421