Carg12898 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg12898
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	peroxisomal adenine nucleotide carrier 1-like
Location	Cucurbita_argyrosperma_scaffold_043 : 1042884 .. 1043809 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GGAAGCCCGAAAGGAAAAATCAAAGAAGACAATATCTGCTAGTGGTAGGCTTCTTGCCTGACTTGGGCTTGGGCGGTGTACTCTCTTACTGTTCAATCCAGCCAATTTATCTTCTTCTAAACATTTCTTTTTGTGGCTTCACTCTGGATTTAACACAACAACTATGATTTTACTTCAGTACACAGTATTTGATCAGCTAAAGCAGAACATCCTCAAAGGAAAACAGAACAAAGCAGAAAAAGGTTCATCTCCAGTAGTCCTTTCTGCTTTTACAGCTTTTGTAATAGGTGCAATTTCAAAAAGCATTGCCACCCTTTTGACATATCCTGCAATCAGGTGCACTATATTTCTTTCACATCCTTATCCTTCTCACACTGGCATGTTGAAACACTAAAGATTTTTCTCCGCACGCAGGTGTAAGGTGATGATCCAAGCTGCACATGACAACGAAACGAAAGAACATCGTCCAAACGTCCGCCGAACAGTTCCGGGTGTTGTCCGTTCTATATGGAGAAAAGAAGGGATACTAGGATTTTTCAAGGGATTGCAAGCACAGATCTTGAAAACGGTACTTAGTTCAGCTCTGCTTTTGATGATAAAAGAGAAGATCACTTCAAGTACATGGGTTTTAATACTTGCAACCAGAAGGTATCTATTTCTTACTAAGCCTAGACTAAAGAGTAGCTGAAGGTGTCAATAAAGGCCAAAAACCTGTGATAAAGAAGGAGAAGAAGCAATAACATGGAAACAATGCAATCTTGTTGGTTAGAAATTAATATATCCTCTGTGGAGAGTTCCATATTTTAGGTTGAAATGCAGGATTTTTTGTTAGAGGGTTCTGGTCAATAATAGCATGACCATAGGTAATGCCATAAATTTTGTACTCAATTACTCTTTGTAAAATAGTTTGTAACCCTACCATTTCA

mRNA sequence

GGAAGCCCGAAAGGAAAAATCAAAGAAGACAATATCTGCTAGTGGTAGGCTTCTTGCCTGACTTGGGCTTGGGCGGTGTACTCTCTTACTGTTCAATCCAGCCAATTTATCTTCTTCTAAACATTTCTTTTTGTGGCTTCACTCTGGATTTAACACAACAACTATGATTTTACTTCAGTACACAGTATTTGATCAGCTAAAGCAGAACATCCTCAAAGGAAAACAGAACAAAGCAGAAAAAGGTTCATCTCCAGTAGTCCTTTCTGCTTTTACAGCTTTTGTAATAGGTGCAATTTCAAAAAGCATTGCCACCCTTTTGACATATCCTGCAATCAGGTGTAAGGTGATGATCCAAGCTGCACATGACAACGAAACGAAAGAACATCGTCCAAACGTCCGCCGAACAGTTCCGGGTGTTGTCCGTTCTATATGGAGAAAAGAAGGGATACTAGGATTTTTCAAGGGATTGCAAGCACAGATCTTGAAAACGGTACTTAGTTCAGCTCTGCTTTTGATGATAAAAGAGAAGATCACTTCAAGTACATGGGTTTTAATACTTGCAACCAGAAGGTATCTATTTCTTACTAAGCCTAGACTAAAGAGTAGCTGAAGGTGTCAATAAAGGCCAAAAACCTGTGATAAAGAAGGAGAAGAAGCAATAACATGGAAACAATGCAATCTTGTTGGTTAGAAATTAATATATCCTCTGTGGAGAGTTCCATATTTTAGGTTGAAATGCAGGATTTTTTGTTAGAGGGTTCTGGTCAATAATAGCATGACCATAGGTAATGCCATAAATTTTGTACTCAATTACTCTTTGTAAAATAGTTTGTAACCCTACCATTTCA

Coding sequence (CDS)

ATGATTTTACTTCAGTACACAGTATTTGATCAGCTAAAGCAGAACATCCTCAAAGGAAAACAGAACAAAGCAGAAAAAGGTTCATCTCCAGTAGTCCTTTCTGCTTTTACAGCTTTTGTAATAGGTGCAATTTCAAAAAGCATTGCCACCCTTTTGACATATCCTGCAATCAGGTGTAAGGTGATGATCCAAGCTGCACATGACAACGAAACGAAAGAACATCGTCCAAACGTCCGCCGAACAGTTCCGGGTGTTGTCCGTTCTATATGGAGAAAAGAAGGGATACTAGGATTTTTCAAGGGATTGCAAGCACAGATCTTGAAAACGGTACTTAGTTCAGCTCTGCTTTTGATGATAAAAGAGAAGATCACTTCAAGTACATGGGTTTTAATACTTGCAACCAGAAGGTATCTATTTCTTACTAAGCCTAGACTAAAGAGTAGCTGA

Protein sequence

MILLQYTVFDQLKQNILKGKQNKAEKGSSPVVLSAFTAFVIGAISKSIATLLTYPAIRCKVMIQAAHDNETKEHRPNVRRTVPGVVRSIWRKEGILGFFKGLQAQILKTVLSSALLLMIKEKITSSTWVLILATRRYLFLTKPRLKSS

Homology

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BLAST of Carg12898 vs. NCBI nr
Match: XP_022946759.1 (peroxisomal adenine nucleotide carrier 1-like [Cucurbita moschata])

HSP 1 Score: 275.0 bits (702), Expect = 1.5e-70
Identity = 144/145 (99.31%), Postives = 145/145 (100.00%), Query Frame = 0


Query: 4   LQYTVFDQLKQNILKGKQNKAEKGSSPVVLSAFTAFVIGAISKSIATLLTYPAIRCKVMI 63
           +QYTVFDQLKQNILKGKQNKAEKGSSPVVLSAFTAFVIGAISKSIATLLTYPAIRCKVMI
Sbjct: 173 IQYTVFDQLKQNILKGKQNKAEKGSSPVVLSAFTAFVIGAISKSIATLLTYPAIRCKVMI 232

Query: 64  QAAHDNETKEHRPNVRRTVPGVVRSIWRKEGILGFFKGLQAQILKTVLSSALLLMIKEKI 123
           QAAHDNETKEHRPNVRRTVPGVVRSIWRKEGILGFFKGLQAQILKTVLSSALLLMIKEKI
Sbjct: 233 QAAHDNETKEHRPNVRRTVPGVVRSIWRKEGILGFFKGLQAQILKTVLSSALLLMIKEKI 292

Query: 124 TSSTWVLILATRRYLFLTKPRLKSS 149
           TSSTWVLILATRRYLFLTKPRLKSS
Sbjct: 293 TSSTWVLILATRRYLFLTKPRLKSS 317

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BLAST of Carg12898 vs. NCBI nr
Match: XP_023521764.1 (peroxisomal adenine nucleotide carrier 1-like, partial [Cucurbita pepo subsp. pepo])

HSP 1 Score: 265.8 bits (678), Expect = 8.9e-68
Identity = 138/145 (95.17%), Postives = 142/145 (97.93%), Query Frame = 0


Query: 4   LQYTVFDQLKQNILKGKQNKAEKGSSPVVLSAFTAFVIGAISKSIATLLTYPAIRCKVMI 63
           +QYTVFDQLKQNIL+GKQNK E+GSSPVVLSAFTAFVIGAISKSIAT+LTYPAIRCKVMI
Sbjct: 165 IQYTVFDQLKQNILRGKQNKTEQGSSPVVLSAFTAFVIGAISKSIATVLTYPAIRCKVMI 224

Query: 64  QAAHDNETKEHRPNVRRTVPGVVRSIWRKEGILGFFKGLQAQILKTVLSSALLLMIKEKI 123
           QAAHDNETKEHRPNVRRTVPGVV SIWRKEGILGFFKGLQAQILKTVLSSALLLMIKEKI
Sbjct: 225 QAAHDNETKEHRPNVRRTVPGVVHSIWRKEGILGFFKGLQAQILKTVLSSALLLMIKEKI 284

Query: 124 TSSTWVLILATRRYLFLTKPRLKSS 149
           TSS WVLILATRRYLFLTKPRLKSS
Sbjct: 285 TSSAWVLILATRRYLFLTKPRLKSS 309

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BLAST of Carg12898 vs. NCBI nr
Match: XP_023545367.1 (peroxisomal adenine nucleotide carrier 1-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 265.8 bits (678), Expect = 8.9e-68
Identity = 138/145 (95.17%), Postives = 142/145 (97.93%), Query Frame = 0


Query: 4   LQYTVFDQLKQNILKGKQNKAEKGSSPVVLSAFTAFVIGAISKSIATLLTYPAIRCKVMI 63
           +QYTVFDQLKQNIL+GKQNK E+GSSPVVLSAFTAFVIGAISKSIAT+LTYPAIRCKVMI
Sbjct: 173 IQYTVFDQLKQNILRGKQNKTEQGSSPVVLSAFTAFVIGAISKSIATVLTYPAIRCKVMI 232

Query: 64  QAAHDNETKEHRPNVRRTVPGVVRSIWRKEGILGFFKGLQAQILKTVLSSALLLMIKEKI 123
           QAAHDNETKEHRPNVRRTVPGVV SIWRKEGILGFFKGLQAQILKTVLSSALLLMIKEKI
Sbjct: 233 QAAHDNETKEHRPNVRRTVPGVVHSIWRKEGILGFFKGLQAQILKTVLSSALLLMIKEKI 292

Query: 124 TSSTWVLILATRRYLFLTKPRLKSS 149
           TSS WVLILATRRYLFLTKPRLKSS
Sbjct: 293 TSSAWVLILATRRYLFLTKPRLKSS 317

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BLAST of Carg12898 vs. NCBI nr
Match: XP_004139184.1 (PREDICTED: peroxisomal adenine nucleotide carrier 1-like [Cucumis sativus] >KGN60898.1 hypothetical protein Csa_2G021690 [Cucumis sativus])

HSP 1 Score: 252.7 bits (644), Expect = 7.8e-64
Identity = 130/145 (89.66%), Postives = 141/145 (97.24%), Query Frame = 0


Query: 4   LQYTVFDQLKQNILKGKQNKAEKGSSPVVLSAFTAFVIGAISKSIATLLTYPAIRCKVMI 63
           +QYTVFDQLKQNILKGKQNK+E+GSSPVVLSAFTAFVIGAISKSIAT+LTYPAIRCKVMI
Sbjct: 173 IQYTVFDQLKQNILKGKQNKSEQGSSPVVLSAFTAFVIGAISKSIATVLTYPAIRCKVMI 232

Query: 64  QAAHDNETKEHRPNVRRTVPGVVRSIWRKEGILGFFKGLQAQILKTVLSSALLLMIKEKI 123
           QAAHD+ETKE+RP V+RTVPGVV SIWRKEG+LGFFKGLQAQILKTVLSSALLLMIKEKI
Sbjct: 233 QAAHDDETKENRPKVQRTVPGVVHSIWRKEGVLGFFKGLQAQILKTVLSSALLLMIKEKI 292

Query: 124 TSSTWVLILATRRYLFLTKPRLKSS 149
           TS+TWVLILA RRYL LT+P+LKSS
Sbjct: 293 TSTTWVLILAARRYLLLTRPKLKSS 317

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BLAST of Carg12898 vs. NCBI nr
Match: XP_008454763.1 (PREDICTED: peroxisomal adenine nucleotide carrier 1-like [Cucumis melo] >ABR67418.1 mitochondrial FAD carrier [Cucumis melo subsp. melo])

HSP 1 Score: 249.6 bits (636), Expect = 6.6e-63
Identity = 130/145 (89.66%), Postives = 140/145 (96.55%), Query Frame = 0


Query: 4   LQYTVFDQLKQNILKGKQNKAEKGSSPVVLSAFTAFVIGAISKSIATLLTYPAIRCKVMI 63
           +QYTVFDQLKQNILKGKQNK+E+GSSPVVLSAFTAFVIGAISKSIAT+LTYPAIRCKVMI
Sbjct: 173 IQYTVFDQLKQNILKGKQNKSEQGSSPVVLSAFTAFVIGAISKSIATVLTYPAIRCKVMI 232

Query: 64  QAAHDNETKEHRPNVRRTVPGVVRSIWRKEGILGFFKGLQAQILKTVLSSALLLMIKEKI 123
           QAAHD+ETKE+R  V+RTVPGVV SIWRKEGILGFFKGLQAQILKTVLSSALLLMIKEKI
Sbjct: 233 QAAHDDETKENRQKVQRTVPGVVHSIWRKEGILGFFKGLQAQILKTVLSSALLLMIKEKI 292

Query: 124 TSSTWVLILATRRYLFLTKPRLKSS 149
           TS+TWVLILA RRYL LT+P+LKSS
Sbjct: 293 TSTTWVLILAIRRYLLLTRPKLKSS 317

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BLAST of Carg12898 vs. TAIR10
Match: AT3G05290.1 (peroxisomal adenine nucleotide carrier 1)

HSP 1 Score: 206.5 bits (524), Expect = 1.2e-53
Identity = 110/146 (75.34%), Postives = 127/146 (86.99%), Query Frame = 0


Query: 4   LQYTVFDQLKQNILKGKQNKAEKGSSPVVLSAFTAFVIGAISKSIATLLTYPAIRCKVMI 63
           +QYTVFDQLKQ++LK K  KAE GSSPVVLSAF AFV+GA+SKS+AT+LTYPAIRCKVMI
Sbjct: 173 IQYTVFDQLKQHLLKQKNAKAENGSSPVVLSAFMAFVLGAVSKSVATVLTYPAIRCKVMI 232

Query: 64  QAA---HDNETKEHRPNVRRTVPGVVRSIWRKEGILGFFKGLQAQILKTVLSSALLLMIK 123
           QAA    +NETK+ R   R+T+PGVV +IWRKEG+LGFFKGLQAQILKTVLSSALLLMIK
Sbjct: 233 QAADESKENETKKPRRRTRKTIPGVVYAIWRKEGMLGFFKGLQAQILKTVLSSALLLMIK 292

Query: 124 EKITSSTWVLILATRRYLFLTKPRLK 147
           EKIT++TW+LILA RR LFLT  + K
Sbjct: 293 EKITATTWILILAIRRTLFLTNTKGK 318

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BLAST of Carg12898 vs. TAIR10
Match: AT5G27520.1 (peroxisomal adenine nucleotide carrier 2)

HSP 1 Score: 199.9 bits (507), Expect = 1.1e-51
Identity = 108/147 (73.47%), Postives = 127/147 (86.39%), Query Frame = 0


Query: 4   LQYTVFDQLKQNILKGKQNKAEKGSSPVVLSAFTAFVIGAISKSIATLLTYPAIRCKVMI 63
           +QYTVFDQLKQN+L+  + K+ K SSPVVLSAF AFV+GA+SKS AT++TYPAIRCKVMI
Sbjct: 175 IQYTVFDQLKQNLLEKGKAKSNKDSSPVVLSAFMAFVLGAVSKSAATVITYPAIRCKVMI 234

Query: 64  QAAHD---NETKEHRPNVRRTVPGVVRSIWRKEGILGFFKGLQAQILKTVLSSALLLMIK 123
           QAA D   NE K+ R  +R+T+PGVV +IW+KEGILGFFKGLQAQILKTVLSSALLLMIK
Sbjct: 235 QAADDSKENEAKKPRKRIRKTIPGVVYAIWKKEGILGFFKGLQAQILKTVLSSALLLMIK 294

Query: 124 EKITSSTWVLILATRRYLFLTKPRLKS 148
           EKIT++TW+LILA R  LF+TK RLKS
Sbjct: 295 EKITATTWILILAIRT-LFVTKARLKS 320

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BLAST of Carg12898 vs. TAIR10
Match: AT2G39970.1 (Mitochondrial substrate carrier family protein)

HSP 1 Score: 66.2 bits (160), Expect = 1.9e-11
Identity = 42/128 (32.81%), Postives = 80/128 (62.50%), Query Frame = 0


Query: 4   LQYTVFDQLKQNILKGKQNKAEKGSSPVVLSAFTAFVIGAISKSIATLLTYPAIRCKVMI 63
           +Q+ +++ +   + K K+ +A KGS+ V  +A   F++GA++K  AT+ TYP +  K  +
Sbjct: 205 MQFMLYETM---LTKLKKKRALKGSNNV--TALETFLLGAVAKLGATVTTYPLLVVKSRL 264

Query: 64  QAAHDNETKEHRPNVRRTVPGVVRSIWRKEGILGFFKGLQAQILKTVLSSALLLMIKEKI 123
           QA     T + R   + T+  +++ I R EG+ GF+KG+  +I+++VL++A+L MIKE++
Sbjct: 265 QAKQVT-TGDKRQQYKGTLDAILKMI-RYEGLYGFYKGMSTKIVQSVLAAAVLFMIKEEL 324

Query: 124 TSSTWVLI 132
                +L+
Sbjct: 325 VKGAKLLL 325

[Close]

BLAST of Carg12898 vs. TAIR10
Match: AT5G66380.1 (folate transporter 1)

HSP 1 Score: 51.6 bits (122), Expect = 4.8e-07
Identity = 35/122 (28.69%), Postives = 67/122 (54.92%), Query Frame = 0


Query: 4   LQYTVFDQLKQNILKGKQNKAEKGSSPVVLSAFTAFVIGAISKSIATLLTYP--AIRCKV 63
           +Q+T +++L++ I+  K+ + +  S+  +L++     +G  SK  A LLTYP   IR ++
Sbjct: 181 IQFTAYEELRKIIVDLKERRRKSESTDNLLNSADYAALGGSSKVAAVLLTYPFQVIRARL 240

Query: 64  MIQAAHDNETKEHRPNVRRTVPGVVRSIWRKEGILGFFKGLQAQILKTVLSSALLLMIKE 123
             Q    N    +  ++      V+R   R EG+ GF++GL A +LK V +S++  ++ E
Sbjct: 241 Q-QRPSTNGIPRYIDSLH-----VIRETARYEGLRGFYRGLTANLLKNVPASSITFIVYE 296

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BLAST of Carg12898 vs. Swiss-Prot
Match: sp|Q9MA90|PNC1_ARATH (Peroxisomal adenine nucleotide carrier 1 OS=Arabidopsis thaliana OX=3702 GN=PNC1 PE=1 SV=1)

HSP 1 Score: 206.5 bits (524), Expect = 2.1e-52
Identity = 110/146 (75.34%), Postives = 127/146 (86.99%), Query Frame = 0


Query: 4   LQYTVFDQLKQNILKGKQNKAEKGSSPVVLSAFTAFVIGAISKSIATLLTYPAIRCKVMI 63
           +QYTVFDQLKQ++LK K  KAE GSSPVVLSAF AFV+GA+SKS+AT+LTYPAIRCKVMI
Sbjct: 173 IQYTVFDQLKQHLLKQKNAKAENGSSPVVLSAFMAFVLGAVSKSVATVLTYPAIRCKVMI 232

Query: 64  QAA---HDNETKEHRPNVRRTVPGVVRSIWRKEGILGFFKGLQAQILKTVLSSALLLMIK 123
           QAA    +NETK+ R   R+T+PGVV +IWRKEG+LGFFKGLQAQILKTVLSSALLLMIK
Sbjct: 233 QAADESKENETKKPRRRTRKTIPGVVYAIWRKEGMLGFFKGLQAQILKTVLSSALLLMIK 292

Query: 124 EKITSSTWVLILATRRYLFLTKPRLK 147
           EKIT++TW+LILA RR LFLT  + K
Sbjct: 293 EKITATTWILILAIRRTLFLTNTKGK 318

[Close]

BLAST of Carg12898 vs. Swiss-Prot
Match: sp|Q8VZS0|PNC2_ARATH (Peroxisomal adenine nucleotide carrier 2 OS=Arabidopsis thaliana OX=3702 GN=PNC2 PE=1 SV=1)

HSP 1 Score: 199.9 bits (507), Expect = 2.0e-50
Identity = 108/147 (73.47%), Postives = 127/147 (86.39%), Query Frame = 0


Query: 4   LQYTVFDQLKQNILKGKQNKAEKGSSPVVLSAFTAFVIGAISKSIATLLTYPAIRCKVMI 63
           +QYTVFDQLKQN+L+  + K+ K SSPVVLSAF AFV+GA+SKS AT++TYPAIRCKVMI
Sbjct: 175 IQYTVFDQLKQNLLEKGKAKSNKDSSPVVLSAFMAFVLGAVSKSAATVITYPAIRCKVMI 234

Query: 64  QAAHD---NETKEHRPNVRRTVPGVVRSIWRKEGILGFFKGLQAQILKTVLSSALLLMIK 123
           QAA D   NE K+ R  +R+T+PGVV +IW+KEGILGFFKGLQAQILKTVLSSALLLMIK
Sbjct: 235 QAADDSKENEAKKPRKRIRKTIPGVVYAIWKKEGILGFFKGLQAQILKTVLSSALLLMIK 294

Query: 124 EKITSSTWVLILATRRYLFLTKPRLKS 148
           EKIT++TW+LILA R  LF+TK RLKS
Sbjct: 295 EKITATTWILILAIRT-LFVTKARLKS 320

[Close]

BLAST of Carg12898 vs. Swiss-Prot
Match: sp|B6ZJZ9|PNC1_SOYBN (Peroxisomal adenine nucleotide carrier 1 OS=Glycine max OX=3847 GN=PNC1 PE=2 SV=1)

HSP 1 Score: 181.0 bits (458), Expect = 9.5e-45
Identity = 97/145 (66.90%), Postives = 119/145 (82.07%), Query Frame = 0


Query: 4   LQYTVFDQLKQNILKGKQNKAEKGSSPVVLSAFTAFVIGAISKSIATLLTYPAIRCKVMI 63
           +QYTVFDQLKQ  LK KQ+ A+KG+SP  LSAF AF++GAISKSIAT LTYPAIRCKV+I
Sbjct: 173 IQYTVFDQLKQRALKNKQDNADKGTSPASLSAFMAFLLGAISKSIATCLTYPAIRCKVII 232

Query: 64  QAAHD-NETKEHRPNVRRTVPGVVRSIWRKEGILGFFKGLQAQILKTVLSSALLLMIKEK 123
           QAA    ET + +   ++TV  V+  IW++EGILG+FKGL AQILKTVLSSALLLMIKEK
Sbjct: 233 QAADSAEETSKTKIKSQKTVLSVLYGIWKREGILGYFKGLHAQILKTVLSSALLLMIKEK 292

Query: 124 ITSSTWVLILATRRYLFLTKPRLKS 148
           I++STWVLILA +RYL L + ++K+
Sbjct: 293 ISASTWVLILALKRYLLLPRGKVKN 317

[Close]

BLAST of Carg12898 vs. Swiss-Prot
Match: sp|O70579|PM34_MOUSE (Peroxisomal membrane protein PMP34 OS=Mus musculus OX=10090 GN=Slc25a17 PE=1 SV=1)

HSP 1 Score: 68.6 bits (166), Expect = 6.9e-11
Identity = 40/129 (31.01%), Postives = 78/129 (60.47%), Query Frame = 0


Query: 4   LQYTVFDQLKQNILKGKQNKAEKGSSPVVLSAFTAFVIGAISKSIATLLTYPAIRCKVMI 63
           +Q+  ++ LK+ +LK +            LS+   F+IGAI+K+IAT +TYP    + ++
Sbjct: 181 IQFMFYEGLKRQLLKKRMK----------LSSLDVFIIGAIAKAIATTVTYPMQTVQSIL 240

Query: 64  QAAHDNETKEHRP-NVRRTVPGVVRSIWRKEGILGFFKGLQAQILKTVLSSALLLMIKEK 123
           +        E+R     R V  ++    ++ GI+G +KGL+A++L+TVL++AL+ ++ EK
Sbjct: 241 RFGRHRLNPENRTLGSLRNVLSLLHQRVKRFGIMGLYKGLEAKLLQTVLTAALMFLVYEK 299

Query: 124 ITSSTWVLI 132
           +T++T+ ++
Sbjct: 301 LTAATFTVM 299

[Close]

BLAST of Carg12898 vs. Swiss-Prot
Match: sp|O43808|PM34_HUMAN (Peroxisomal membrane protein PMP34 OS=Homo sapiens OX=9606 GN=SLC25A17 PE=1 SV=1)

HSP 1 Score: 67.8 bits (164), Expect = 1.2e-10
Identity = 42/135 (31.11%), Postives = 79/135 (58.52%), Query Frame = 0


Query: 4   LQYTVFDQLKQNILKGKQNKAEKGSSPVVLSAFTAFVIGAISKSIATLLTYPAIRCKVMI 63
           +Q+  ++ LK+ +LK +            LS+   F+IGA++K+IAT +TYP    + ++
Sbjct: 181 IQFMFYEGLKRQLLKKRMK----------LSSLDVFIIGAVAKAIATTVTYPLQTVQSIL 240

Query: 64  QAAHDNETKEHRPNVRRTVPGVVRSIW-------RKEGILGFFKGLQAQILKTVLSSALL 123
           +         HR N      G +R+I        R+ GI+G +KGL+A++L+TVL++AL+
Sbjct: 241 RFG------RHRLNPENRTLGSLRNILYLLHQRVRRFGIMGLYKGLEAKLLQTVLTAALM 299

Query: 124 LMIKEKITSSTWVLI 132
            ++ EK+T++T+ ++
Sbjct: 301 FLVYEKLTAATFTVM 299

[Close]

BLAST of Carg12898 vs. TrEMBL
Match: tr|A0A0A0LGC2|A0A0A0LGC2_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G021690 PE=3 SV=1)

HSP 1 Score: 252.7 bits (644), Expect = 5.2e-64
Identity = 130/145 (89.66%), Postives = 141/145 (97.24%), Query Frame = 0


Query: 4   LQYTVFDQLKQNILKGKQNKAEKGSSPVVLSAFTAFVIGAISKSIATLLTYPAIRCKVMI 63
           +QYTVFDQLKQNILKGKQNK+E+GSSPVVLSAFTAFVIGAISKSIAT+LTYPAIRCKVMI
Sbjct: 173 IQYTVFDQLKQNILKGKQNKSEQGSSPVVLSAFTAFVIGAISKSIATVLTYPAIRCKVMI 232

Query: 64  QAAHDNETKEHRPNVRRTVPGVVRSIWRKEGILGFFKGLQAQILKTVLSSALLLMIKEKI 123
           QAAHD+ETKE+RP V+RTVPGVV SIWRKEG+LGFFKGLQAQILKTVLSSALLLMIKEKI
Sbjct: 233 QAAHDDETKENRPKVQRTVPGVVHSIWRKEGVLGFFKGLQAQILKTVLSSALLLMIKEKI 292

Query: 124 TSSTWVLILATRRYLFLTKPRLKSS 149
           TS+TWVLILA RRYL LT+P+LKSS
Sbjct: 293 TSTTWVLILAARRYLLLTRPKLKSS 317

[Close]

BLAST of Carg12898 vs. TrEMBL
Match: tr|A0A1S3BYW5|A0A1S3BYW5_CUCME (peroxisomal adenine nucleotide carrier 1-like OS=Cucumis melo OX=3656 GN=LOC103495080 PE=3 SV=1)

HSP 1 Score: 249.6 bits (636), Expect = 4.4e-63
Identity = 130/145 (89.66%), Postives = 140/145 (96.55%), Query Frame = 0


Query: 4   LQYTVFDQLKQNILKGKQNKAEKGSSPVVLSAFTAFVIGAISKSIATLLTYPAIRCKVMI 63
           +QYTVFDQLKQNILKGKQNK+E+GSSPVVLSAFTAFVIGAISKSIAT+LTYPAIRCKVMI
Sbjct: 173 IQYTVFDQLKQNILKGKQNKSEQGSSPVVLSAFTAFVIGAISKSIATVLTYPAIRCKVMI 232

Query: 64  QAAHDNETKEHRPNVRRTVPGVVRSIWRKEGILGFFKGLQAQILKTVLSSALLLMIKEKI 123
           QAAHD+ETKE+R  V+RTVPGVV SIWRKEGILGFFKGLQAQILKTVLSSALLLMIKEKI
Sbjct: 233 QAAHDDETKENRQKVQRTVPGVVHSIWRKEGILGFFKGLQAQILKTVLSSALLLMIKEKI 292

Query: 124 TSSTWVLILATRRYLFLTKPRLKSS 149
           TS+TWVLILA RRYL LT+P+LKSS
Sbjct: 293 TSTTWVLILAIRRYLLLTRPKLKSS 317

[Close]

BLAST of Carg12898 vs. TrEMBL
Match: tr|A6YTC9|A6YTC9_CUCME (Mitochondrial FAD carrier OS=Cucumis melo subsp. melo OX=412675 PE=3 SV=1)

HSP 1 Score: 249.6 bits (636), Expect = 4.4e-63
Identity = 130/145 (89.66%), Postives = 140/145 (96.55%), Query Frame = 0


Query: 4   LQYTVFDQLKQNILKGKQNKAEKGSSPVVLSAFTAFVIGAISKSIATLLTYPAIRCKVMI 63
           +QYTVFDQLKQNILKGKQNK+E+GSSPVVLSAFTAFVIGAISKSIAT+LTYPAIRCKVMI
Sbjct: 173 IQYTVFDQLKQNILKGKQNKSEQGSSPVVLSAFTAFVIGAISKSIATVLTYPAIRCKVMI 232

Query: 64  QAAHDNETKEHRPNVRRTVPGVVRSIWRKEGILGFFKGLQAQILKTVLSSALLLMIKEKI 123
           QAAHD+ETKE+R  V+RTVPGVV SIWRKEGILGFFKGLQAQILKTVLSSALLLMIKEKI
Sbjct: 233 QAAHDDETKENRQKVQRTVPGVVHSIWRKEGILGFFKGLQAQILKTVLSSALLLMIKEKI 292

Query: 124 TSSTWVLILATRRYLFLTKPRLKSS 149
           TS+TWVLILA RRYL LT+P+LKSS
Sbjct: 293 TSTTWVLILAIRRYLLLTRPKLKSS 317

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BLAST of Carg12898 vs. TrEMBL
Match: tr|A0A087H731|A0A087H731_ARAAL (Uncharacterized protein OS=Arabis alpina OX=50452 GN=AALP_AA3G049000 PE=3 SV=1)

HSP 1 Score: 208.4 bits (529), Expect = 1.1e-50
Identity = 110/147 (74.83%), Postives = 129/147 (87.76%), Query Frame = 0


Query: 4   LQYTVFDQLKQNILKGKQNKAEKGSSPVVLSAFTAFVIGAISKSIATLLTYPAIRCKVMI 63
           +QYTVFDQLKQ++LK K  KAE GSSPVVLSAF AFV+GA+SKS+AT+LTYPAIRCKVMI
Sbjct: 173 IQYTVFDQLKQHLLKQKTEKAENGSSPVVLSAFMAFVLGAVSKSVATVLTYPAIRCKVMI 232

Query: 64  QAAHDN---ETKEHRPNVRRTVPGVVRSIWRKEGILGFFKGLQAQILKTVLSSALLLMIK 123
           QAA D+   ETK+ +   R+T+P VV +IWRKEG+LGFFKGLQAQILKTVLSSALLLMIK
Sbjct: 233 QAADDSKETETKKPKRRTRKTIPSVVYAIWRKEGMLGFFKGLQAQILKTVLSSALLLMIK 292

Query: 124 EKITSSTWVLILATRRYLFLTKPRLKS 148
           EKIT++TW+LILA RR LFLTK +LK+
Sbjct: 293 EKITATTWILILAIRRTLFLTKGKLKN 319

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BLAST of Carg12898 vs. TrEMBL
Match: tr|A0A2P6R6X8|A0A2P6R6X8_ROSCH (Putative mitochondrial carrier protein OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr3g0454671 PE=3 SV=1)

HSP 1 Score: 208.0 bits (528), Expect = 1.5e-50
Identity = 106/148 (71.62%), Postives = 130/148 (87.84%), Query Frame = 0


Query: 4   LQYTVFDQLKQNILKGKQNKAEKGSSPVVLSAFTAFVIGAISKSIATLLTYPAIRCKVMI 63
           +QYTVFDQLKQ +LKGKQ+K  KGSSP  LSAF+AFV+GA+SKS+AT+LTYPAIRCKVMI
Sbjct: 243 IQYTVFDQLKQRLLKGKQDKLAKGSSPEALSAFSAFVLGAVSKSVATVLTYPAIRCKVMI 302

Query: 64  QAA---HDNETKEHRPNVRRTVPGVVRSIWRKEGILGFFKGLQAQILKTVLSSALLLMIK 123
           QAA    D++TKE RP +R+T+PG   +IW++EGI G+FKGL AQILKTVLSSALLLMIK
Sbjct: 303 QAADPDDDDKTKEARPRIRKTIPGTFSAIWKREGIPGYFKGLHAQILKTVLSSALLLMIK 362

Query: 124 EKITSSTWVLILATRRYLFLTKPRLKSS 149
           EKI+++TWVLILA RRYLFLT+ R+K++
Sbjct: 363 EKISATTWVLILAIRRYLFLTRGRVKNA 390

The following BLAST results are available for this feature:

BLAST of Carg12898 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022946759.1	1.5e-70	99.31	peroxisomal adenine nucleotide carrier 1-like [Cucurbita moschata]	[more]
XP_023521764.1	8.9e-68	95.17	peroxisomal adenine nucleotide carrier 1-like, partial [Cucurbita pepo subsp. pe...	[more]
XP_023545367.1	8.9e-68	95.17	peroxisomal adenine nucleotide carrier 1-like [Cucurbita pepo subsp. pepo]	[more]
XP_004139184.1	7.8e-64	89.66	PREDICTED: peroxisomal adenine nucleotide carrier 1-like [Cucumis sativus] >KGN6...	[more]
XP_008454763.1	6.6e-63	89.66	PREDICTED: peroxisomal adenine nucleotide carrier 1-like [Cucumis melo] >ABR6741...	[more]

BLAST of Carg12898 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G05290.1	1.2e-53	75.34	peroxisomal adenine nucleotide carrier 1	[more]
AT5G27520.1	1.1e-51	73.47	peroxisomal adenine nucleotide carrier 2	[more]
AT2G39970.1	1.9e-11	32.81	Mitochondrial substrate carrier family protein	[more]
AT5G66380.1	4.8e-07	28.69	folate transporter 1	[more]

BLAST of Carg12898 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q9MA90\|PNC1_ARATH	2.1e-52	75.34	Peroxisomal adenine nucleotide carrier 1 OS=Arabidopsis thaliana OX=3702 GN=PNC1...	[more]
sp\|Q8VZS0\|PNC2_ARATH	2.0e-50	73.47	Peroxisomal adenine nucleotide carrier 2 OS=Arabidopsis thaliana OX=3702 GN=PNC2...	[more]
sp\|B6ZJZ9\|PNC1_SOYBN	9.5e-45	66.90	Peroxisomal adenine nucleotide carrier 1 OS=Glycine max OX=3847 GN=PNC1 PE=2 SV=...	[more]
sp\|O70579\|PM34_MOUSE	6.9e-11	31.01	Peroxisomal membrane protein PMP34 OS=Mus musculus OX=10090 GN=Slc25a17 PE=1 SV=...	[more]
sp\|O43808\|PM34_HUMAN	1.2e-10	31.11	Peroxisomal membrane protein PMP34 OS=Homo sapiens OX=9606 GN=SLC25A17 PE=1 SV=1	[more]

BLAST of Carg12898 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0LGC2\|A0A0A0LGC2_CUCSA	5.2e-64	89.66	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G021690 PE=3 SV=1	[more]
tr\|A0A1S3BYW5\|A0A1S3BYW5_CUCME	4.4e-63	89.66	peroxisomal adenine nucleotide carrier 1-like OS=Cucumis melo OX=3656 GN=LOC1034...	[more]
tr\|A6YTC9\|A6YTC9_CUCME	4.4e-63	89.66	Mitochondrial FAD carrier OS=Cucumis melo subsp. melo OX=412675 PE=3 SV=1	[more]
tr\|A0A087H731\|A0A087H731_ARAAL	1.1e-50	74.83	Uncharacterized protein OS=Arabis alpina OX=50452 GN=AALP_AA3G049000 PE=3 SV=1	[more]
tr\|A0A2P6R6X8\|A0A2P6R6X8_ROSCH	1.5e-50	71.62	Putative mitochondrial carrier protein OS=Rosa chinensis OX=74649 GN=RchiOBHm_Ch...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR018108	Mitochondrial_sb/sol_carrier
IPR023395	Mt_carrier_dom_sf

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg12898-RA	Carg12898-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR023395	Mitochondrial carrier domain superfamily	GENE3D	G3DSA:1.50.40.10		coord: 1..128 e-value: 5.0E-18 score: 66.8
IPR023395	Mitochondrial carrier domain superfamily	SUPERFAMILY	SSF103506	Mitochondrial carrier	coord: 4..122
IPR018108	Mitochondrial substrate/solute carrier	PFAM	PF00153	Mito_carr	coord: 34..124 e-value: 2.3E-17 score: 62.6
IPR018108	Mitochondrial substrate/solute carrier	PROSITE	PS50920	SOLCAR	coord: 33..126 score: 15.991
None	No IPR available	PANTHER	PTHR24089	FAMILY NOT NAMED	coord: 4..136
None	No IPR available	PANTHER	PTHR24089:SF445	SUBFAMILY NOT NAMED	coord: 4..136

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg12898	Cla019884	Watermelon (97103) v1	carwmB0907
Carg12898	Csa2G021690	Cucumber (Chinese Long) v2	carcuB0917
Carg12898	MELO3C004274	Melon (DHL92) v3.5.1	carmeB0893
Carg12898	ClCG02G015870	Watermelon (Charleston Gray)	carwcgB0883
Carg12898	CSPI02G03870	Wild cucumber (PI 183967)	carcpiB0938
Carg12898	Cucsa.091550	Cucumber (Gy14) v1	carcgyB1020
Carg12898	CmaCh05G011440	Cucurbita maxima (Rimu)	carcmaB1246
Carg12898	CmaCh12G010760	Cucurbita maxima (Rimu)	carcmaB1241
Carg12898	CmoCh05G011550	Cucurbita moschata (Rifu)	carcmoB1216
Carg12898	CmoCh12G010910	Cucurbita moschata (Rifu)	carcmoB1212
Carg12898	Lsi11G005340	Bottle gourd (USVL1VR-Ls)	carlsiB822
Carg12898	Cp4.1LG11g09410	Cucurbita pepo (Zucchini)	carcpeB1252
Carg12898	Cp4.1LG07g09040	Cucurbita pepo (Zucchini)	carcpeB1256
Carg12898	CsGy2G003940	Cucumber (Gy14) v2	carcgybB0890
Carg12898	MELO3C004274.2	Melon (DHL92) v3.6.1	carmedB0900
Carg12898	CsaV3_2G005190	Cucumber (Chinese Long) v3	carcucB0940
Carg12898	Cla97C02G041620	Watermelon (97103) v2	carwmbB0946
Carg12898	Bhi05G001646	Wax gourd	carwgoB1046

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Carg12898	Carg17547	Silver-seed gourd	carcarB587

The following block(s) are covering this gene:


Gene	Organism	Block
Carg12898	Watermelon (97103) v2	carwmbB0949