Carg12204 (gene) Silver-seed gourd

Overview
NameCarg12204
Typegene
OrganismCucurbita argyrosperma (Silver-seed gourd)
DescriptionDynein light chain
LocationCucurbita_argyrosperma_scaffold_054 : 446522 .. 447069 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TATATACACGCTAGTATTATATAATAAATTCCATTATAATCCTCTCTTTGCCTCTTCCTGTGTCGTTCTGATAATATAGAAGATCATGTTGGAAGGGAAAGCCACCGTCAAACAAACCGACATGTCGGAGAAGATGCAGATTCACGCCAAGGCCTCTGCATCTCACGCCCTCGATCTCTTCGACGTCTCCGATTGCCTCTCGCTTGCTGCACATATCAAGAAGGTATAATTTCCTTTTCCTTTTCATTTTAATTTTAATTTTAATTTGGTATGATATTATCAAAATTAAATCAATTAGGAATTTGATCGGAGCTATGGGAGTGGGTGGCAATGTGTGGTGGGTTCCAATTTCGGCTGCTTCTTCACTCATTCAAAGGGGACCTTCATCTATTTTTCCCTTGAAACTCTCAATTTTCTCATCTTTAAAGCTGCTTCCAACTAATTATTTCCAAAATTACCATTTCAAAGCACCACAAATGCTTCCATCTTCAGGGGCACCCTCGTCCTTTCCCCTCCTCCTCTCTCTAAATTACATGGAACCAACCATG

mRNA sequence

TATATACACGCTAGTATTATATAATAAATTCCATTATAATCCTCTCTTTGCCTCTTCCTGTGTCGTTCTGATAATATAGAAGATCATGTTGGAAGGGAAAGCCACCGTCAAACAAACCGACATGTCGGAGAAGATGCAGATTCACGCCAAGGCCTCTGCATCTCACGCCCTCGATCTCTTCGACGTCTCCGATTGCCTCTCGCTTGCTGCACATATCAAGAAGGAATTTGATCGGAGCTATGGGAGTGGGTGGCAATGTGTGGTGGGTTCCAATTTCGGCTGCTTCTTCACTCATTCAAAGGGGACCTTCATCTATTTTTCCCTTGAAACTCTCAATTTTCTCATCTTTAAAGCTGCTTCCAACTAATTATTTCCAAAATTACCATTTCAAAGCACCACAAATGCTTCCATCTTCAGGGGCACCCTCGTCCTTTCCCCTCCTCCTCTCTCTAAATTACATGGAACCAACCATG

Coding sequence (CDS)

ATGTTGGAAGGGAAAGCCACCGTCAAACAAACCGACATGTCGGAGAAGATGCAGATTCACGCCAAGGCCTCTGCATCTCACGCCCTCGATCTCTTCGACGTCTCCGATTGCCTCTCGCTTGCTGCACATATCAAGAAGGAATTTGATCGGAGCTATGGGAGTGGGTGGCAATGTGTGGTGGGTTCCAATTTCGGCTGCTTCTTCACTCATTCAAAGGGGACCTTCATCTATTTTTCCCTTGAAACTCTCAATTTTCTCATCTTTAAAGCTGCTTCCAACTAA

Protein sequence

MLEGKATVKQTDMSEKMQIHAKASASHALDLFDVSDCLSLAAHIKKEFDRSYGSGWQCVVGSNFGCFFTHSKGTFIYFSLETLNFLIFKAASN
Homology
[Close]
BLAST of Carg12204 vs. NCBI nr
Match: XP_022933771.1 (dynein light chain 1, cytoplasmic-like [Cucurbita moschata] >XP_022973196.1 dynein light chain 1, cytoplasmic-like [Cucurbita maxima] >XP_023529424.1 dynein light chain 1, cytoplasmic-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 188.7 bits (478), Expect = 8.7e-45
Identity = 93/93 (100.00%), Postives = 93/93 (100.00%), Query Frame = 0 

Query: 1  MLEGKATVKQTDMSEKMQIHAKASASHALDLFDVSDCLSLAAHIKKEFDRSYGSGWQCVV 60
          MLEGKATVKQTDMSEKMQIHAKASASHALDLFDVSDCLSLAAHIKKEFDRSYGSGWQCVV
Sbjct: 1  MLEGKATVKQTDMSEKMQIHAKASASHALDLFDVSDCLSLAAHIKKEFDRSYGSGWQCVV 60

Query: 61 GSNFGCFFTHSKGTFIYFSLETLNFLIFKAASN 94
          GSNFGCFFTHSKGTFIYFSLETLNFLIFKAASN
Sbjct: 61 GSNFGCFFTHSKGTFIYFSLETLNFLIFKAASN 93

[Close]
BLAST of Carg12204 vs. NCBI nr
Match: XP_008462685.1 (PREDICTED: dynein light chain 1, cytoplasmic-like [Cucumis melo])

HSP 1 Score: 163.7 bits (413), Expect = 3.0e-37
Identity = 80/92 (86.96%), Postives = 87/92 (94.57%), Query Frame = 0 

Query: 1  MLEGKATVKQTDMSEKMQIHAKASASHALDLFDVSDCLSLAAHIKKEFDRSYGSGWQCVV 60
          MLEGKATVK+TDMSEKMQ+HA ASASHALDLFDVSD LSLA++IKK+FD +YGSGWQCVV
Sbjct: 1  MLEGKATVKETDMSEKMQMHAMASASHALDLFDVSDFLSLASYIKKDFDGTYGSGWQCVV 60

Query: 61 GSNFGCFFTHSKGTFIYFSLETLNFLIFKAAS 93
          GSNFGCFFTHS GTFIYFSLETLNFLIFK+ S
Sbjct: 61 GSNFGCFFTHSMGTFIYFSLETLNFLIFKSPS 92

[Close]
BLAST of Carg12204 vs. NCBI nr
Match: XP_004150050.1 (PREDICTED: dynein light chain 1, cytoplasmic-like [Cucumis sativus])

HSP 1 Score: 163.3 bits (412), Expect = 3.9e-37
Identity = 80/92 (86.96%), Postives = 86/92 (93.48%), Query Frame = 0 

Query: 1  MLEGKATVKQTDMSEKMQIHAKASASHALDLFDVSDCLSLAAHIKKEFDRSYGSGWQCVV 60
          MLEGKATVK+TDMSEKMQ+HA ASAS ALDLFDVSD LSLA+HIKK+FD +YGSGWQCVV
Sbjct: 1  MLEGKATVKETDMSEKMQMHAMASASQALDLFDVSDSLSLASHIKKDFDGTYGSGWQCVV 60

Query: 61 GSNFGCFFTHSKGTFIYFSLETLNFLIFKAAS 93
          GSNFGCFFTHS GTFIYFSLETLNFLIFK+ S
Sbjct: 61 GSNFGCFFTHSMGTFIYFSLETLNFLIFKSPS 92

[Close]
BLAST of Carg12204 vs. NCBI nr
Match: XP_014508216.1 (dynein light chain 1, cytoplasmic [Vigna radiata var. radiata])

HSP 1 Score: 161.8 bits (408), Expect = 1.1e-36
Identity = 76/93 (81.72%), Postives = 86/93 (92.47%), Query Frame = 0 

Query: 1  MLEGKATVKQTDMSEKMQIHAKASASHALDLFDVSDCLSLAAHIKKEFDRSYGSGWQCVV 60
          MLEGKA VK+TDMS KMQIHA A+ASHALDL+DVSDC+S+AAHIKKEFD  YG+GWQCVV
Sbjct: 1  MLEGKALVKETDMSPKMQIHAMAAASHALDLYDVSDCISVAAHIKKEFDSVYGNGWQCVV 60

Query: 61 GSNFGCFFTHSKGTFIYFSLETLNFLIFKAASN 94
          GSNFGC+FTHS GTFIYF+LETLNFLIFK +S+
Sbjct: 61 GSNFGCYFTHSSGTFIYFALETLNFLIFKGSSS 93

[Close]
BLAST of Carg12204 vs. NCBI nr
Match: XP_022144999.1 (dynein light chain 1, cytoplasmic-like [Momordica charantia])

HSP 1 Score: 161.8 bits (408), Expect = 1.1e-36
Identity = 79/89 (88.76%), Postives = 82/89 (92.13%), Query Frame = 0 

Query: 1  MLEGKATVKQTDMSEKMQIHAKASASHALDLFDVSDCLSLAAHIKKEFDRSYGSGWQCVV 60
          MLEGK  VK+TDMSEKMQIHA ASASHALDLFDVSDCLSLAAHIKKEFDR+YG GWQCVV
Sbjct: 1  MLEGKGRVKETDMSEKMQIHAMASASHALDLFDVSDCLSLAAHIKKEFDRTYGGGWQCVV 60

Query: 61 GSNFGCFFTHSKGTFIYFSLETLNFLIFK 90
          GSNFG FFTHS  TFIYF+LETLNFLIFK
Sbjct: 61 GSNFGSFFTHSTATFIYFALETLNFLIFK 89

[Close]
BLAST of Carg12204 vs. TAIR10
Match: AT3G16120.1 (Dynein light chain type 1 family protein)

HSP 1 Score: 141.7 bits (356), Expect = 2.2e-34
Identity = 69/92 (75.00%), Postives = 77/92 (83.70%), Query Frame = 0 

Query: 1  MLEGKATVKQTDMSEKMQIHAKASASHALDLFDVSDCLSLAAHIKKEFDRSYGSGWQCVV 60
          MLEGKA V++TDM  KMQ+ A   AS +LDLFDV D +S+AAHIKKEFD  YGSGWQCVV
Sbjct: 1  MLEGKAKVEETDMPVKMQMQAMKIASQSLDLFDVFDSISIAAHIKKEFDERYGSGWQCVV 60

Query: 61 GSNFGCFFTHSKGTFIYFSLETLNFLIFKAAS 93
          G+NFGCFFTHSKGTFIYF L TLNFLIFK A+
Sbjct: 61 GTNFGCFFTHSKGTFIYFHLGTLNFLIFKGAT 92

[Close]
BLAST of Carg12204 vs. TAIR10
Match: AT4G27360.1 (Dynein light chain type 1 family protein)

HSP 1 Score: 104.4 bits (259), Expect = 3.9e-23
Identity = 51/91 (56.04%), Postives = 66/91 (72.53%), Query Frame = 0 

Query: 1  MLEGKATVKQTDMSEKMQIHAKASASHALDLFDVSDCLSLAAHIKKEFDRSYGSGWQCVV 60
          MLEGKA +  TDM + M+  A + AS ALD FDV++   +A  IKKEFDRSYGSGWQC+V
Sbjct: 1  MLEGKAVMGDTDMKQTMKEDALSLASKALDCFDVTEPTQIARFIKKEFDRSYGSGWQCIV 60

Query: 61 GSNFGCFFTHSKGTFIYFSLETLNFLIFKAA 92
          G++FG F TH  G FI+FS+ +L  L+FK +
Sbjct: 61 GTHFGSFVTHCSGCFIHFSVGSLTILLFKGS 91

[Close]
BLAST of Carg12204 vs. TAIR10
Match: AT1G52240.1 (RHO guanyl-nucleotide exchange factor 11)

HSP 1 Score: 86.7 bits (213), Expect = 8.5e-18
Identity = 42/59 (71.19%), Postives = 46/59 (77.97%), Query Frame = 0 

Query: 1  MLEGKATVKQTDMSEKMQIHAKASASHALDLFDVSDCLSLAAHIKKEFDRSYGSGWQCV 60
          MLEGKA V+ +DM  KMQ+ A A AS ALDLFDV DC S+A HIKKEFD  YGSGWQCV
Sbjct: 1  MLEGKAMVEDSDMPVKMQMQAMAFASQALDLFDVFDCKSIAGHIKKEFDERYGSGWQCV 59

[Close]
BLAST of Carg12204 vs. TAIR10
Match: AT5G20110.1 (Dynein light chain type 1 family protein)

HSP 1 Score: 77.0 bits (188), Expect = 6.7e-15
Identity = 38/78 (48.72%), Postives = 48/78 (61.54%), Query Frame = 0 

Query: 12  DMSEKMQIHAKASASHALDLFDVSDCLSLAAHIKKEFDRSYGSGWQCVVGSNFGCFFTHS 71
           DM   MQ HA   A   LD  +      +A ++KKEFD+ YG  W C+VGS+FG F THS
Sbjct: 123 DMPGFMQAHAFRCARMTLDSLEKFSSKHMAFNLKKEFDKGYGPAWHCIVGSSFGSFVTHS 182

Query: 72  KGTFIYFSLETLNFLIFK 90
            G FIYFS++ L  L+FK
Sbjct: 183 TGCFIYFSMDKLYVLLFK 200

[Close]
BLAST of Carg12204 vs. TAIR10
Match: AT4G15930.1 (Dynein light chain type 1 family protein)

HSP 1 Score: 68.2 bits (165), Expect = 3.1e-12
Identity = 34/86 (39.53%), Postives = 50/86 (58.14%), Query Frame = 0 

Query: 5   KATVKQTDMSEKMQIHAKASASHALDLFDVSDCLSLAAHIKKEFDRSYGSGWQCVVGSNF 64
           +A +K  DM + MQ  A   A  A + + V     +A +IKKEFD+ +G+ W C+VG NF
Sbjct: 39  RAVIKSADMKDDMQKEAIEIAISAFEKYSVEK--DIAENIKKEFDKKHGATWHCIVGRNF 98

Query: 65  GCFFTHSKGTFIYFSLETLNFLIFKA 91
           G + TH    F+YF L+    L+FK+
Sbjct: 99  GSYVTHETNHFVYFYLDQKAVLLFKS 122

[Close]
BLAST of Carg12204 vs. Swiss-Prot
Match: sp|P61285|DYL1_BOVIN (Dynein light chain 1, cytoplasmic OS=Bos taurus OX=9913 GN=DYNLL1 PE=1 SV=1)

HSP 1 Score: 79.7 bits (195), Expect = 1.9e-14
Identity = 40/90 (44.44%), Postives = 56/90 (62.22%), Query Frame = 0 

Query: 1  MLEGKATVKQTDMSEKMQIHAKASASHALDLFDVSDCLSLAAHIKKEFDRSYGSGWQCVV 60
          M + KA +K  DMSE+MQ  +   A+ AL+ +++     +AAHIKKEFD+ Y   W C+V
Sbjct: 1  MCDRKAVIKNADMSEEMQQDSVECATQALEKYNIEK--DIAAHIKKEFDKKYNPTWHCIV 60

Query: 61 GSNFGCFFTHSKGTFIYFSLETLNFLIFKA 91
          G NFG + TH    FIYF L  +  L+FK+
Sbjct: 61 GRNFGSYVTHETKHFIYFYLGQVAILLFKS 88

[Close]
BLAST of Carg12204 vs. Swiss-Prot
Match: sp|P63167|DYL1_HUMAN (Dynein light chain 1, cytoplasmic OS=Homo sapiens OX=9606 GN=DYNLL1 PE=1 SV=1)

HSP 1 Score: 79.7 bits (195), Expect = 1.9e-14
Identity = 40/90 (44.44%), Postives = 56/90 (62.22%), Query Frame = 0 

Query: 1  MLEGKATVKQTDMSEKMQIHAKASASHALDLFDVSDCLSLAAHIKKEFDRSYGSGWQCVV 60
          M + KA +K  DMSE+MQ  +   A+ AL+ +++     +AAHIKKEFD+ Y   W C+V
Sbjct: 1  MCDRKAVIKNADMSEEMQQDSVECATQALEKYNIEK--DIAAHIKKEFDKKYNPTWHCIV 60

Query: 61 GSNFGCFFTHSKGTFIYFSLETLNFLIFKA 91
          G NFG + TH    FIYF L  +  L+FK+
Sbjct: 61 GRNFGSYVTHETKHFIYFYLGQVAILLFKS 88

[Close]
BLAST of Carg12204 vs. Swiss-Prot
Match: sp|P61273|DYL1_MACFA (Dynein light chain 1, cytoplasmic OS=Macaca fascicularis OX=9541 GN=DYNLL1 PE=3 SV=1)

HSP 1 Score: 79.7 bits (195), Expect = 1.9e-14
Identity = 40/90 (44.44%), Postives = 56/90 (62.22%), Query Frame = 0 

Query: 1  MLEGKATVKQTDMSEKMQIHAKASASHALDLFDVSDCLSLAAHIKKEFDRSYGSGWQCVV 60
          M + KA +K  DMSE+MQ  +   A+ AL+ +++     +AAHIKKEFD+ Y   W C+V
Sbjct: 1  MCDRKAVIKNADMSEEMQQDSVECATQALEKYNIEK--DIAAHIKKEFDKKYNPTWHCIV 60

Query: 61 GSNFGCFFTHSKGTFIYFSLETLNFLIFKA 91
          G NFG + TH    FIYF L  +  L+FK+
Sbjct: 61 GRNFGSYVTHETKHFIYFYLGQVAILLFKS 88

[Close]
BLAST of Carg12204 vs. Swiss-Prot
Match: sp|P63168|DYL1_MOUSE (Dynein light chain 1, cytoplasmic OS=Mus musculus OX=10090 GN=Dynll1 PE=1 SV=1)

HSP 1 Score: 79.7 bits (195), Expect = 1.9e-14
Identity = 40/90 (44.44%), Postives = 56/90 (62.22%), Query Frame = 0 

Query: 1  MLEGKATVKQTDMSEKMQIHAKASASHALDLFDVSDCLSLAAHIKKEFDRSYGSGWQCVV 60
          M + KA +K  DMSE+MQ  +   A+ AL+ +++     +AAHIKKEFD+ Y   W C+V
Sbjct: 1  MCDRKAVIKNADMSEEMQQDSVECATQALEKYNIEK--DIAAHIKKEFDKKYNPTWHCIV 60

Query: 61 GSNFGCFFTHSKGTFIYFSLETLNFLIFKA 91
          G NFG + TH    FIYF L  +  L+FK+
Sbjct: 61 GRNFGSYVTHETKHFIYFYLGQVAILLFKS 88

[Close]
BLAST of Carg12204 vs. Swiss-Prot
Match: sp|P63169|DYL1_RABIT (Dynein light chain 1, cytoplasmic OS=Oryctolagus cuniculus OX=9986 GN=DYNLL1 PE=1 SV=1)

HSP 1 Score: 79.7 bits (195), Expect = 1.9e-14
Identity = 40/90 (44.44%), Postives = 56/90 (62.22%), Query Frame = 0 

Query: 1  MLEGKATVKQTDMSEKMQIHAKASASHALDLFDVSDCLSLAAHIKKEFDRSYGSGWQCVV 60
          M + KA +K  DMSE+MQ  +   A+ AL+ +++     +AAHIKKEFD+ Y   W C+V
Sbjct: 1  MCDRKAVIKNADMSEEMQQDSVECATQALEKYNIEK--DIAAHIKKEFDKKYNPTWHCIV 60

Query: 61 GSNFGCFFTHSKGTFIYFSLETLNFLIFKA 91
          G NFG + TH    FIYF L  +  L+FK+
Sbjct: 61 GRNFGSYVTHETKHFIYFYLGQVAILLFKS 88

[Close]
BLAST of Carg12204 vs. TrEMBL
Match: tr|A0A1S3CJ38|A0A1S3CJ38_CUCME (Dynein light chain OS=Cucumis melo OX=3656 GN=LOC103500988 PE=3 SV=1)

HSP 1 Score: 163.7 bits (413), Expect = 2.0e-37
Identity = 80/92 (86.96%), Postives = 87/92 (94.57%), Query Frame = 0 

Query: 1  MLEGKATVKQTDMSEKMQIHAKASASHALDLFDVSDCLSLAAHIKKEFDRSYGSGWQCVV 60
          MLEGKATVK+TDMSEKMQ+HA ASASHALDLFDVSD LSLA++IKK+FD +YGSGWQCVV
Sbjct: 1  MLEGKATVKETDMSEKMQMHAMASASHALDLFDVSDFLSLASYIKKDFDGTYGSGWQCVV 60

Query: 61 GSNFGCFFTHSKGTFIYFSLETLNFLIFKAAS 93
          GSNFGCFFTHS GTFIYFSLETLNFLIFK+ S
Sbjct: 61 GSNFGCFFTHSMGTFIYFSLETLNFLIFKSPS 92

[Close]
BLAST of Carg12204 vs. TrEMBL
Match: tr|A0A1S3UQ79|A0A1S3UQ79_VIGRR (Dynein light chain OS=Vigna radiata var. radiata OX=3916 GN=LOC106767782 PE=3 SV=1)

HSP 1 Score: 161.8 bits (408), Expect = 7.6e-37
Identity = 76/93 (81.72%), Postives = 86/93 (92.47%), Query Frame = 0 

Query: 1  MLEGKATVKQTDMSEKMQIHAKASASHALDLFDVSDCLSLAAHIKKEFDRSYGSGWQCVV 60
          MLEGKA VK+TDMS KMQIHA A+ASHALDL+DVSDC+S+AAHIKKEFD  YG+GWQCVV
Sbjct: 1  MLEGKALVKETDMSPKMQIHAMAAASHALDLYDVSDCISVAAHIKKEFDSVYGNGWQCVV 60

Query: 61 GSNFGCFFTHSKGTFIYFSLETLNFLIFKAASN 94
          GSNFGC+FTHS GTFIYF+LETLNFLIFK +S+
Sbjct: 61 GSNFGCYFTHSSGTFIYFALETLNFLIFKGSSS 93

[Close]
BLAST of Carg12204 vs. TrEMBL
Match: tr|A0A0L9VRV1|A0A0L9VRV1_PHAAN (Dynein light chain OS=Phaseolus angularis OX=3914 GN=LR48_Vigan11g083300 PE=3 SV=1)

HSP 1 Score: 161.4 bits (407), Expect = 9.9e-37
Identity = 76/93 (81.72%), Postives = 85/93 (91.40%), Query Frame = 0 

Query: 1  MLEGKATVKQTDMSEKMQIHAKASASHALDLFDVSDCLSLAAHIKKEFDRSYGSGWQCVV 60
          MLEGKA VK+TDMS KMQIHA A+ASHALDL+DVSDC+S+AAHIKKEFD  YG+GWQCVV
Sbjct: 1  MLEGKALVKETDMSPKMQIHAMAAASHALDLYDVSDCISVAAHIKKEFDSVYGNGWQCVV 60

Query: 61 GSNFGCFFTHSKGTFIYFSLETLNFLIFKAASN 94
          GSNFGC+FTHS GTFIYF+LETLNFLIFK  S+
Sbjct: 61 GSNFGCYFTHSSGTFIYFALETLNFLIFKGTSS 93

[Close]
BLAST of Carg12204 vs. TrEMBL
Match: tr|A0A0S3QWU7|A0A0S3QWU7_PHAAN (Dynein light chain OS=Vigna angularis var. angularis OX=157739 GN=Vigan.01G026900 PE=3 SV=1)

HSP 1 Score: 161.4 bits (407), Expect = 9.9e-37
Identity = 76/93 (81.72%), Postives = 85/93 (91.40%), Query Frame = 0 

Query: 1  MLEGKATVKQTDMSEKMQIHAKASASHALDLFDVSDCLSLAAHIKKEFDRSYGSGWQCVV 60
          MLEGKA VK+TDMS KMQIHA A+ASHALDL+DVSDC+S+AAHIKKEFD  YG+GWQCVV
Sbjct: 1  MLEGKALVKETDMSPKMQIHAMAAASHALDLYDVSDCISVAAHIKKEFDSVYGNGWQCVV 60

Query: 61 GSNFGCFFTHSKGTFIYFSLETLNFLIFKAASN 94
          GSNFGC+FTHS GTFIYF+LETLNFLIFK  S+
Sbjct: 61 GSNFGCYFTHSSGTFIYFALETLNFLIFKGTSS 93

[Close]
BLAST of Carg12204 vs. TrEMBL
Match: tr|V7CSS4|V7CSS4_PHAVU (Dynein light chain OS=Phaseolus vulgaris OX=3885 GN=PHAVU_002G312600g PE=3 SV=1)

HSP 1 Score: 161.4 bits (407), Expect = 9.9e-37
Identity = 77/93 (82.80%), Postives = 84/93 (90.32%), Query Frame = 0 

Query: 1  MLEGKATVKQTDMSEKMQIHAKASASHALDLFDVSDCLSLAAHIKKEFDRSYGSGWQCVV 60
          MLEGKA VK+TDMS KMQIHA ASASHALDL+DVSDC S+AAHIKKEFD  YG+GWQCVV
Sbjct: 1  MLEGKALVKETDMSPKMQIHAMASASHALDLYDVSDCTSVAAHIKKEFDSVYGNGWQCVV 60

Query: 61 GSNFGCFFTHSKGTFIYFSLETLNFLIFKAASN 94
          GSNFGC+FTHS GTFIYF+LETLNFLIFK  S+
Sbjct: 61 GSNFGCYFTHSSGTFIYFALETLNFLIFKGTSS 93

The following BLAST results are available for this feature:
BLAST of Carg12204 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022933771.18.7e-45100.00dynein light chain 1, cytoplasmic-like [Cucurbita moschata] >XP_022973196.1 dyne... [more]
XP_008462685.13.0e-3786.96PREDICTED: dynein light chain 1, cytoplasmic-like [Cucumis melo][more]
XP_004150050.13.9e-3786.96PREDICTED: dynein light chain 1, cytoplasmic-like [Cucumis sativus][more]
XP_014508216.11.1e-3681.72dynein light chain 1, cytoplasmic [Vigna radiata var. radiata][more]
XP_022144999.11.1e-3688.76dynein light chain 1, cytoplasmic-like [Momordica charantia][more]
BLAST of Carg12204 vs. TAIR10
Match NameE-valueIdentityDescription
AT3G16120.12.2e-3475.00Dynein light chain type 1 family protein[more]
AT4G27360.13.9e-2356.04Dynein light chain type 1 family protein[more]
AT1G52240.18.5e-1871.19RHO guanyl-nucleotide exchange factor 11[more]
AT5G20110.16.7e-1548.72Dynein light chain type 1 family protein[more]
AT4G15930.13.1e-1239.53Dynein light chain type 1 family protein[more]
BLAST of Carg12204 vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|P61285|DYL1_BOVIN1.9e-1444.44Dynein light chain 1, cytoplasmic OS=Bos taurus OX=9913 GN=DYNLL1 PE=1 SV=1[more]
sp|P63167|DYL1_HUMAN1.9e-1444.44Dynein light chain 1, cytoplasmic OS=Homo sapiens OX=9606 GN=DYNLL1 PE=1 SV=1[more]
sp|P61273|DYL1_MACFA1.9e-1444.44Dynein light chain 1, cytoplasmic OS=Macaca fascicularis OX=9541 GN=DYNLL1 PE=3 ... [more]
sp|P63168|DYL1_MOUSE1.9e-1444.44Dynein light chain 1, cytoplasmic OS=Mus musculus OX=10090 GN=Dynll1 PE=1 SV=1[more]
sp|P63169|DYL1_RABIT1.9e-1444.44Dynein light chain 1, cytoplasmic OS=Oryctolagus cuniculus OX=9986 GN=DYNLL1 PE=... [more]
BLAST of Carg12204 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A1S3CJ38|A0A1S3CJ38_CUCME2.0e-3786.96Dynein light chain OS=Cucumis melo OX=3656 GN=LOC103500988 PE=3 SV=1[more]
tr|A0A1S3UQ79|A0A1S3UQ79_VIGRR7.6e-3781.72Dynein light chain OS=Vigna radiata var. radiata OX=3916 GN=LOC106767782 PE=3 SV... [more]
tr|A0A0L9VRV1|A0A0L9VRV1_PHAAN9.9e-3781.72Dynein light chain OS=Phaseolus angularis OX=3914 GN=LR48_Vigan11g083300 PE=3 SV... [more]
tr|A0A0S3QWU7|A0A0S3QWU7_PHAAN9.9e-3781.72Dynein light chain OS=Vigna angularis var. angularis OX=157739 GN=Vigan.01G02690... [more]
tr|V7CSS4|V7CSS4_PHAVU9.9e-3782.80Dynein light chain OS=Phaseolus vulgaris OX=3885 GN=PHAVU_002G312600g PE=3 SV=1[more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0007017microtubule-based process
Vocabulary: Cellular Component
TermDefinition
GO:0030286dynein complex
Vocabulary: INTERPRO
TermDefinition
IPR037177DLC_sf
IPR001372Dynein_light_chain_typ-1/2
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0007017 microtubule-based process
cellular_component GO:0030286 dynein complex
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg12204-RACarg12204-RAmRNA


InterPro
Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001372Dynein light chain, type 1/2SMARTSM01375Dynein_light_2coord: 1..90
e-value: 1.9E-42
score: 157.0
IPR001372Dynein light chain, type 1/2PFAMPF01221Dynein_lightcoord: 5..89
e-value: 4.2E-31
score: 107.0
IPR001372Dynein light chain, type 1/2PANTHERPTHR11886DYNEIN LIGHT CHAINcoord: 1..92
IPR037177Dynein light chain superfamilyGENE3DG3DSA:3.30.740.10coord: 1..91
e-value: 3.8E-30
score: 105.8
IPR037177Dynein light chain superfamilySUPERFAMILYSSF54648DLCcoord: 1..89
NoneNo IPR availablePANTHERPTHR11886:SF47SUBFAMILY NOT NAMEDcoord: 1..92

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Carg12204Cla010655Watermelon (97103) v1carwmB0039
Carg12204MELO3C024627Melon (DHL92) v3.5.1carmeB0035
Carg12204ClCG06G008710Watermelon (Charleston Gray)carwcgB0040
Carg12204CSPI07G21450Wild cucumber (PI 183967)carcpiB0045
Carg12204CmaCh11G006160Cucurbita maxima (Rimu)carcmaB0047
Carg12204CmoCh11G006240Cucurbita moschata (Rifu)carcmoB0050
Carg12204Lsi06G008610Bottle gourd (USVL1VR-Ls)carlsiB037
Carg12204Cp4.1LG04g09900Cucurbita pepo (Zucchini)carcpeB0054
Carg12204MELO3C024627.2Melon (DHL92) v3.6.1carmedB0036
Carg12204CsaV3_7G033370Cucumber (Chinese Long) v3carcucB0047
Carg12204Cla97C06G118450Watermelon (97103) v2carwmbB0034
Carg12204Cla97C09G164120Watermelon (97103) v2carwmbB0040
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
Carg12204Carg18793Silver-seed gourdcarcarB045
Carg12204Carg09522Silver-seed gourdcarcarB047
The following block(s) are covering this gene:
GeneOrganismBlock
Carg12204Watermelon (97103) v2carwmbB0031
Carg12204Wax gourdcarwgoB0038
Carg12204Wax gourdcarwgoB0043
Carg12204Silver-seed gourdcarcarB046
Carg12204Silver-seed gourdcarcarB041
Carg12204Silver-seed gourdcarcarB042
Carg12204Silver-seed gourdcarcarB044
Carg12204Cucumber (Gy14) v2carcgybB0035
Carg12204Cucumber (Gy14) v2carcgybB0041
Carg12204Cucumber (Gy14) v1carcgyB0040
Carg12204Cucurbita maxima (Rimu)carcmaB0044
Carg12204Cucurbita maxima (Rimu)carcmaB0048
Carg12204Cucurbita maxima (Rimu)carcmaB0049
Carg12204Cucurbita moschata (Rifu)carcmoB0047
Carg12204Cucurbita moschata (Rifu)carcmoB0051
Carg12204Cucurbita moschata (Rifu)carcmoB0052
Carg12204Cucurbita pepo (Zucchini)carcpeB0049
Carg12204Cucurbita pepo (Zucchini)carcpeB0053
Carg12204Cucurbita pepo (Zucchini)carcpeB0055
Carg12204Wild cucumber (PI 183967)carcpiB0044
Carg12204Cucumber (Chinese Long) v2carcuB0042
Carg12204Cucumber (Chinese Long) v3carcucB0037
Carg12204Cucumber (Chinese Long) v3carcucB0045
Carg12204Bottle gourd (USVL1VR-Ls)carlsiB033
Carg12204Melon (DHL92) v3.5.1carmeB0039
Carg12204Melon (DHL92) v3.6.1carmedB0040
Carg12204Watermelon (Charleston Gray)carwcgB0037
Carg12204Watermelon (97103) v1carwmB0038