Carg12078 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg12078
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Ubiquitin family protein
Location	Cucurbita_argyrosperma_scaffold_037 : 1046629 .. 1052059 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GAAGGGATTGCAGACTCGGATGAGAGAAGACGGAAGCTCCCTCTCACTGCACGCAAATCGCTGGAAGACGTACCCGAATCTTTGTCTGTGTCATGGCGGAGATTGTTGAGGTCCCCAATTTCAATCGGAACATTAGCGGAGGACCCAATTCGAGCATCACCTATGGCAATCCTCCGGAAAACACAATCGAGATCACCATTCGAACCATCGGCCCTGCGCGTCCCTCTCGCCTTCTCGTCCCTTCGCCGATCAAGGTACGGAAACCTTTCTTCTTCTTCTTCTTCTTCTTCTTCGATATTGATTGATTTTGTTTCATCAGGTGTGTGACTTGCGGAAATTGGTCGCGGAGCGTAGTCAATTACCCATTGGGAATTTGAAGCTTATTTTACGAGGAAAAATTTTGGACGACTGTAAAAATGACGATGATGTATTTGTGCGGCTCAATCATGGCGGTATAATTGCGGTATTCTGCTGATTGCGGGATATTTCATTCTGTTGTTTGTATCACGGTCGTCTGAAATACTATATGTAGTCTAGGTTTATACTTTCTCTATTGCTTTTCCGTATACACCGCCCTTTTCATGGTGATGCTGGCCCCTTTGATGACTATACATGCTTCAGCTTTCAAAATGTCGTTGTGATGCATGTTTCTCCATATTACACATTTCTTGCTTCGATCTTCTAGGTTCTGGACTATCATTTTTCATATGCTAGTACCTGCTTGGATTCTAGTTACAAATAAAAGCAAGAAAATGTCCCACCGCTGAAAATTGAATCATGATTCTTGCTTATTGATCTTGTTTTTTTTTTTTTTTTTTTTTTTTTCTAATCGACCTGTCTTGTGTTGTTCGTGGTACTTTGGCTTCTTGTTGCACAGTATCTGTTTCTTTGTTGTTCTGCATGCTTTCTATACTGTTCTGAATGGTTTGAGTTTCTATGGGCTTATCATTTGACAATTCAGTTTGAAATCAGTAATTGGATGCCTCCGTTTCTTGTGTAGATTCATTGACTGTTGCTGTGAAGCCAAAGCCCCCAGCAGAACATCTTCGTGATGATTCTGATGATGATGAGGATGATCTGGTATGAACCATTAAGTATTTCAATTGTTGTTCTTAGACAGGAAGCTTAGCTTGAAGCTGTTCTCAATTATCTGTTTCGCATCAATGGTTACATTTTCAGAAGTTTCGGCTTCCAGAGTCTTCAAGTCGGTTGAAGAAGAAAATTTACAATTTTCTGCGCGAGAAGTTGAAGTTTCCTGGTAATAATCATATGCTAAATTATGCCAAGAAGTTCTATGTACGAATTTTCTAATTTCATTTTGGTTCTTTGTTCTGTGAATAGATATCCTTTTGATGGTGATTTTCTCTCTCAGTCTAAAGGCTTGGGCTGCTATACTTATCTGGTTTATCATGGCACCTGTTGCCCATAGCTGGGATCTTGGACCTTTATATGTAAGTAATAATGTTCTGTTAGTTACTAGATTTTGAATTTTGGTGCCATTATTTTCGGTAGTTATTTTATGGCAACCTTAGGAGCTGTTTCTTAAACAGTTGTGCAAATCAGTTTTTCAAAAATATTTTTAGTATTGCAACATAATTAACAAGTGTCTTAGAATATGGTTTCACTGTGTTTGATCATTGTTATCCAATTGTGTGGTCTGAGAAAACCAATTTCAATTGTTCTTAAAAAATCAACACATTTTGCAGATAATAAAGCAAGAGAAAACAATTTTTAGCACACAATTACTTCAAAATGTTATCAAATTAGAGTATTTGGTGCGGAAAATTACTGTTTTTCAATTTGACTCTCGTAAATCCTCTCATTTTTTTGAGTAGTGTCTCTCTCAGCACGTGACAATTTCTATTCTCCATATACTTTTTTGAAGCTGAAGTACCTTATTCTAGTATATTGTGAGAAAATATATGCATGTCATGGAAACAAGTCTGGTTTTCTTTTTGAATTATCATGGCACAACATCAAACAGGATTTTCTATGTTTGAGTATTTTTTGCAGATACTTGGCACTGGTTTTTGCATCATTCTACTAAATCTTGGACATCGGCGATCTGGGGAAATGAGGTAAGTAGTATTTGAGAGAAACTCTCATCCCATTCATGTCCAGCTGAGTTGTAGGACTTTTGTATGCTTTAGATAAACTAAGTCAAGGCATGATTGTGTGTTTATACATTCTCCGATCTCATGGCTTGTCCAGTTGTTTGTTCTTAAATGTGTTAGGTCCCTATACATTTGTGGAAAAGGAAAAGTACGCGGTTAAAGGGTAACAATAAGAATGGGTGACGATGCAAATTGATTAGTAGAGGTGGGAATTAGAAAGAATAAGAACCTAGGAAGCTGGTGAGAACTATAGCATAATGAAATACTTATAGCTAGGGGTGTCAAAAGAGAAGATGTTATTCTTTAGGTGGTGCTCGGAAGTCTCAATTTCTCCCTCTTGTTTGTGCAACTTTCCACTATTTTTTCAATTACATATCTACTGAGTAGTGGTACTCGAACAATCGGTTCCTAGGACTTGATGGTTGCAAATAGGAAAATAGAGAATCGCTTGGAAGCAATTGAGGAGAAGTTACTATAATGTTTAAATAGACTTGTCGGTAATGCATTGGGCAGGGGATGCAGGAAATGCCCAAGGAGATGAGCCATTTGATGGAATACTATATGGAAAATATAATGAATATTGAGTTTGGGGCTAATCTTGTGCCAACCTCAGAAAATAAGGATAAGGTTCCAATCATACAAGCAAAGTATGGCATCAATTAAGTGCTAGATTAAGGAAGGGGGAAGGCTTCGATAGGATCATCATCTAGACCAAGGGGGAAGGGCATCATAGAGAACTAATGAGGATCCAAAGTGGAGATTTGAAATGGAAATTTCTAGTGACCCGCTGTGGCCTGCTAACCTTAGCTGAGTGATACTTGAACGATCATAAATTGATTGAGGAGAAGCTTGTGGTAGCAACACTTGAATGTTAATAAATTGGTTGAGGAGAAGCTTGAGCGGGCAGCAATGTATATGAAAGGAGAGGCATTGAAATGGTTTTAGCTGGAGGAAAGATGCAAGTCTTTCAAAAATTGGATTGGGTAGCAAGGAAAAAGATAGTTGCTAAAGTTACTTTTGCAATTGCAAGAGGAATCACACTCGAGAGATTTCAAGCTGTGTAATGAGAGACTACCATGAGGGAGTATGAAAGGCATTTCAGCATCATTGATTGGCATAAATGATGGGTTCTGGATGGTGAAGTAAGAATTATTCCGTAGGCACTTGTGTCAGCTGCCAGTGATGCTCATCTATGATCAAGAACCTGGCATAGAGGAAGAATAATATCTAACAGAGGAGGATTTGGTGGTACATACAGAATATCTAATAGCTGATATGGTGCCATAGATACAATAAAAAAGAGATTCGTTAAAAAATGGAGTGGAGTAGAGAGGTGAGTTGTGATTGAATTGTTGATGGGGTTGTCTTTGATTTCAGTGGTGGGCTTTGATACATACATACATATATATTAGTTCAATAACGGTGGAGTGGAGATTCGAATCTATGATGGTAGAAGATATAATATCTTAACTAGTTGAGCTAAGTTTAGATTGGATGGGTTTGATATATATTTTAGGATGATGAAGAACTAAGGGATGGATATGAGGAGAGGTGATAAATATAGTACTTTAATCAGCCGAGTTATGCTCACATTGGTCGGACTTCGATATATTTTCTAGGACGATAGAGATCGAGGGATAACTATGAGCAAAGGTGATTGATATAATATATTAACCAGATGAGTTATACTCAGGTTGGTTGGGTTTGATATATTTTCTAGGAGGTTGAAGATCAAGGGACGGATATAAGGATAGGTGATAGCGTTAATTGTCTGTGGTGAGACACAATTTTATTTCAAAGAAATTGTAGAAGCCTTAGCATTGCCAACGACCAAAACTTCAAGTTATGGAGTAGTAATGAATGGACAGAATATTTGTTCAAGGGGGTAATACAAATGTGTGACAAGAGGAGCTGATGCTTTCAGATTCAAGACTGGGGGTTTTCTTGAGGGTCATTAACGATAAGTTAAGTATTATGACACAAGTCTTTGACAAAAGCAGATAGATGAGGAAATTGATAAATAATGTATCAAGGAGAAGCTGTGACAAGGTACCTCTTCCATTTCAGGTACTTGATGCATCATGCTTCATTATGTCACAATAATAATTGCATGATCTCAAGCTGAGAATGTAGCCAATATTTTCTTTCGTGGAGTTGCTTGTTTACGTGGGATTCCTGGAAGTACTGTCCCCGATCATGATCGTAGTTAGACTAGTAATATTTTGTCAAAACTATTTAAATGGCAAGGCATGTTCTCCTTGTCATCCAATTTGAGGTGATTAGTTGAGGACAAGGATCGTAATTTGCTCTAACGAAACCCGAACCATAAGCTTGTTTGCAACTTGTGATAACTTGTGTAGATAGTGCTTCAGTTGCGTAGTTTAACATTTGTGATGGGTATGTGTAAGCGGACCACATAAGTACTGATTCAATGGAAAGGGGTGTGTGCTGATGATGTCACATGGGATCCAGCCATCACATAATATCCATTTCTAACCTCTCTTTGCCTCGAGGGCAGCGTTGCTATTTGAGGTCGGGGGTACTGGACGGCCCCTGACCCAAACAAAATGCAATGGAAGGAGATGTAAGATGATTGGGCAATGCGTCTGCGCAGTGATGTAAACTGATTAGAGGAAGCCCACACCGTTAGCAGATCTTGTCCGCTTTGGTTCATTACATATTGCTATCAGTCTCACTCTTTTAAAATGCGTCTACTAGGGAGAAGTTTCCACACTCCTATAAAAAAATGTTTTGTTCCGCTCTCCACCTGACGTGGGATCTCACATAGGAATTAATTAGGAATCTAGGAGGTTCATTAGGAACACCAACATGTAAATACGTATAGCAAGACGGTAACAGAAAGAGTGATTAACGGGATACTAGAGCAATTGAAAGTTCTTGAATTCTCCCTATTATAAGAATAACGTCCAAATAGTTTTCATCGACATTTCCACATCAAGTCTATTAAAAAATGTTGTGTGAATGCGCTCTCTTAAGCCTCTATATGGGCTCATTAATTATAGGTTTTATGTGCATGGTAGCTTGCATGATGACACTGTTATATTGCGAACATTATTCTGAGGCGTGAATGTCGAATTTTTGCAGTGCATATTCCATCTTCAACGAAGGTTTCAGAGAGCTTCCAGGGACCCTCAATGCAGACCGCCTCGATAGAGACGTTAGGCTGGGTCAGTTCTGATAAACTTAATATGTTAATGCTGATTTTGTAGTTGAACTATAGACAAAAGGTAATGTTCCTAAGGAAAGTTAATACTCCTGTCTTGTTCACTTATGTGTATAAAAGTTCCATCTTCAGT

mRNA sequence

GAAGGGATTGCAGACTCGGATGAGAGAAGACGGAAGCTCCCTCTCACTGCACGCAAATCGCTGGAAGACGTACCCGAATCTTTGTCTGTGTCATGGCGGAGATTGTTGAGGTCCCCAATTTCAATCGGAACATTAGCGGAGGACCCAATTCGAGCATCACCTATGGCAATCCTCCGGAAAACACAATCGAGATCACCATTCGAACCATCGGCCCTGCGCGTCCCTCTCGCCTTCTCGTCCCTTCGCCGATCAAGGTGTGTGACTTGCGGAAATTGGTCGCGGAGCGTAGTCAATTACCCATTGGGAATTTGAAGCTTATTTTACGAGGAAAAATTTTGGACGACTGTAAAAATGACGATGATGTATTTGTGCGGCTCAATCATGGCGATTCATTGACTGTTGCTGTGAAGCCAAAGCCCCCAGCAGAACATCTTCGTGATGATTCTGATGATGATGAGGATGATCTGAAGTTTCGGCTTCCAGAGTCTTCAAGTCGGTTGAAGAAGAAAATTTACAATTTTCTGCGCGAGAAGTTGAAGTTTCCTGATATCCTTTTGATGGTGATTTTCTCTCTCAGTCTAAAGGCTTGGGCTGCTATACTTATCTGGTTTATCATGGCACCTGTTGCCCATAGCTGGGATCTTGGACCTTTATATTATATTGTGAGAAAATATATGCATGTCATGGAAACAAGTCTGGTTTTCTTTTTGAATTATCATGGCACAACATCAAACAGGATTTTCTATATACTTGGCACTGGTTTTTGCATCATTCTACTAAATCTTGGACATCGGCGATCTGGGGAAATGAGTGCATATTCCATCTTCAACGAAGGTTTCAGAGAGCTTCCAGGGACCCTCAATGCAGACCGCCTCGATAGAGACGTTAGGCTGGGTCAGTTCTGATAAACTTAATATGTTAATGCTGATTTTGTAGTTGAACTATAGACAAAAGGTAATGTTCCTAAGGAAAGTTAATACTCCTGTCTTGTTCACTTATGTGTATAAAAGTTCCATCTTCAGT

Coding sequence (CDS)

ATGGCGGAGATTGTTGAGGTCCCCAATTTCAATCGGAACATTAGCGGAGGACCCAATTCGAGCATCACCTATGGCAATCCTCCGGAAAACACAATCGAGATCACCATTCGAACCATCGGCCCTGCGCGTCCCTCTCGCCTTCTCGTCCCTTCGCCGATCAAGGTGTGTGACTTGCGGAAATTGGTCGCGGAGCGTAGTCAATTACCCATTGGGAATTTGAAGCTTATTTTACGAGGAAAAATTTTGGACGACTGTAAAAATGACGATGATGTATTTGTGCGGCTCAATCATGGCGATTCATTGACTGTTGCTGTGAAGCCAAAGCCCCCAGCAGAACATCTTCGTGATGATTCTGATGATGATGAGGATGATCTGAAGTTTCGGCTTCCAGAGTCTTCAAGTCGGTTGAAGAAGAAAATTTACAATTTTCTGCGCGAGAAGTTGAAGTTTCCTGATATCCTTTTGATGGTGATTTTCTCTCTCAGTCTAAAGGCTTGGGCTGCTATACTTATCTGGTTTATCATGGCACCTGTTGCCCATAGCTGGGATCTTGGACCTTTATATTATATTGTGAGAAAATATATGCATGTCATGGAAACAAGTCTGGTTTTCTTTTTGAATTATCATGGCACAACATCAAACAGGATTTTCTATATACTTGGCACTGGTTTTTGCATCATTCTACTAAATCTTGGACATCGGCGATCTGGGGAAATGAGTGCATATTCCATCTTCAACGAAGGTTTCAGAGAGCTTCCAGGGACCCTCAATGCAGACCGCCTCGATAGAGACGTTAGGCTGGGTCAGTTCTGA

Protein sequence

MAEIVEVPNFNRNISGGPNSSITYGNPPENTIEITIRTIGPARPSRLLVPSPIKVCDLRKLVAERSQLPIGNLKLILRGKILDDCKNDDDVFVRLNHGDSLTVAVKPKPPAEHLRDDSDDDEDDLKFRLPESSSRLKKKIYNFLREKLKFPDILLMVIFSLSLKAWAAILIWFIMAPVAHSWDLGPLYYIVRKYMHVMETSLVFFLNYHGTTSNRIFYILGTGFCIILLNLGHRRSGEMSAYSIFNEGFRELPGTLNADRLDRDVRLGQF

Homology

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BLAST of Carg12078 vs. NCBI nr
Match: XP_022948058.1 (uncharacterized protein LOC111451749 [Cucurbita moschata])

HSP 1 Score: 464.5 bits (1194), Expect = 2.4e-127
Identity = 240/270 (88.89%), Postives = 240/270 (88.89%), Query Frame = 0


Query: 1   MAEIVEVPNFNRNISGGPNSSITYGNPPENTIEITIRTIGPARPSRLLVPSPIKVCDLRK 60
           MAEIVEVPNFNRNISGGPNSSITYGNPPENTIEITIRTIGPARPSRLLVPSPIKVCDLRK
Sbjct: 1   MAEIVEVPNFNRNISGGPNSSITYGNPPENTIEITIRTIGPARPSRLLVPSPIKVCDLRK 60

Query: 61  LVAERSQLPIGNLKLILRGKILDDCKNDDDVFVRLNHGDSLTVAVKPKPPAEHLRDDSDD 120
           LVAERSQLPIGNLKLILRGKILDDCKNDDDVFVRLNHGDSLTVAVKPKPPAEHLRDDSDD
Sbjct: 61  LVAERSQLPIGNLKLILRGKILDDCKNDDDVFVRLNHGDSLTVAVKPKPPAEHLRDDSDD 120

Query: 121 DEDDLKFRLPESSSRLKKKIYNFLREKLKFPDILLMVIFSLSLKAWAAILIWFIMAPVAH 180
           DEDDLKFRLPESSSRLKKKIYNFLREKLKFPDILLMVIFSLSLKAWAAILIWFIMAPVAH
Sbjct: 121 DEDDLKFRLPESSSRLKKKIYNFLREKLKFPDILLMVIFSLSLKAWAAILIWFIMAPVAH 180

Query: 181 SWDLGPLYYIVRKYMHVMETSLVFFLNYHGTTSNRIFYILGTGFCIILLNLGHRRSGEMS 240
           SWDLGPL                              YILGTGFCIILLNLGHRRSGEMS
Sbjct: 181 SWDLGPL------------------------------YILGTGFCIILLNLGHRRSGEMS 240

Query: 241 AYSIFNEGFRELPGTLNADRLDRDVRLGQF 271
           AYSIFNEGFRELPGTLNADRLDRDVRLGQF
Sbjct: 241 AYSIFNEGFRELPGTLNADRLDRDVRLGQF 240

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BLAST of Carg12078 vs. NCBI nr
Match: XP_023520906.1 (uncharacterized protein LOC111784424 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 452.2 bits (1162), Expect = 1.2e-123
Identity = 233/270 (86.30%), Postives = 237/270 (87.78%), Query Frame = 0


Query: 1   MAEIVEVPNFNRNISGGPNSSITYGNPPENTIEITIRTIGPARPSRLLVPSPIKVCDLRK 60
           MAEIVEVPNFNRNISG PNSS++YGNPPENTIEITIRTIGPARPSRLLVPSPIKVCDLRK
Sbjct: 1   MAEIVEVPNFNRNISGAPNSSVSYGNPPENTIEITIRTIGPARPSRLLVPSPIKVCDLRK 60

Query: 61  LVAERSQLPIGNLKLILRGKILDDCKNDDDVFVRLNHGDSLTVAVKPKPPAEHLRDDSDD 120
           LVAERSQLPIGNLKLILRGKILDD KNDDDVFVRLNHGDSLTVAVKP+PPAEHLRDDSDD
Sbjct: 61  LVAERSQLPIGNLKLILRGKILDDSKNDDDVFVRLNHGDSLTVAVKPRPPAEHLRDDSDD 120

Query: 121 DEDDLKFRLPESSSRLKKKIYNFLREKLKFPDILLMVIFSLSLKAWAAILIWFIMAPVAH 180
           +EDDLKFRLPESSSRLKKKIYNFLREKLKFPDILLMVIFSLSLKAW AILIWFIMAPVAH
Sbjct: 121 EEDDLKFRLPESSSRLKKKIYNFLREKLKFPDILLMVIFSLSLKAWVAILIWFIMAPVAH 180

Query: 181 SWDLGPLYYIVRKYMHVMETSLVFFLNYHGTTSNRIFYILGTGFCIILLNLGHRRSGEMS 240
           SWDLGPL                              YILGTGFCIILLNLGHRRSGEMS
Sbjct: 181 SWDLGPL------------------------------YILGTGFCIILLNLGHRRSGEMS 240

Query: 241 AYSIFNEGFRELPGTLNADRLDRDVRLGQF 271
           AYSIFNEGFRELPGTLNADRLDRDVRLGQF
Sbjct: 241 AYSIFNEGFRELPGTLNADRLDRDVRLGQF 240

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BLAST of Carg12078 vs. NCBI nr
Match: XP_023005519.1 (uncharacterized protein LOC111498482 [Cucurbita maxima])

HSP 1 Score: 450.3 bits (1157), Expect = 4.7e-123
Identity = 234/270 (86.67%), Postives = 235/270 (87.04%), Query Frame = 0


Query: 1   MAEIVEVPNFNRNISGGPNSSITYGNPPENTIEITIRTIGPARPSRLLVPSPIKVCDLRK 60
           MAEIVEVPNFNRNI G PNSSITYGNPPENTIEITIRTIGPARPSRLLVPS IKVCDLRK
Sbjct: 1   MAEIVEVPNFNRNIGGAPNSSITYGNPPENTIEITIRTIGPARPSRLLVPSRIKVCDLRK 60

Query: 61  LVAERSQLPIGNLKLILRGKILDDCKNDDDVFVRLNHGDSLTVAVKPKPPAEHLRDDSDD 120
           LVAERSQLPIGNLKLILRGKILDD KNDDDVFVRLNHGDSLTVAVKPKPPAEHLRDDSDD
Sbjct: 61  LVAERSQLPIGNLKLILRGKILDDSKNDDDVFVRLNHGDSLTVAVKPKPPAEHLRDDSDD 120

Query: 121 DEDDLKFRLPESSSRLKKKIYNFLREKLKFPDILLMVIFSLSLKAWAAILIWFIMAPVAH 180
           +EDDLKFRLPESSSRLKKKIYNFLREKLKFPDILLMVIFSLSLKAW AILIWFIMAPVAH
Sbjct: 121 EEDDLKFRLPESSSRLKKKIYNFLREKLKFPDILLMVIFSLSLKAWVAILIWFIMAPVAH 180

Query: 181 SWDLGPLYYIVRKYMHVMETSLVFFLNYHGTTSNRIFYILGTGFCIILLNLGHRRSGEMS 240
           SWDLGPL                              YILGTGFCIILLNLGHRRSGEMS
Sbjct: 181 SWDLGPL------------------------------YILGTGFCIILLNLGHRRSGEMS 240

Query: 241 AYSIFNEGFRELPGTLNADRLDRDVRLGQF 271
           AYSIFNEGFRELPGTLNADRLDRDVRLGQF
Sbjct: 241 AYSIFNEGFRELPGTLNADRLDRDVRLGQF 240

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BLAST of Carg12078 vs. NCBI nr
Match: XP_004148728.1 (PREDICTED: uncharacterized protein LOC101223066 [Cucumis sativus] >KGN55783.1 hypothetical protein Csa_3G011840 [Cucumis sativus])

HSP 1 Score: 409.8 bits (1052), Expect = 7.0e-111
Identity = 209/270 (77.41%), Postives = 226/270 (83.70%), Query Frame = 0


Query: 1   MAEIVEVPNFNRNISGGPNSSITYGNPPENTIEITIRTIGPARPSRLLVPSPIKVCDLRK 60
           MAEIVE  NFNR+I+GG +SSI+   PP++T+E+ +RTIGP RPSRLL PS IKVCDLRK
Sbjct: 1   MAEIVEDSNFNRSITGGADSSISNRTPPQDTVEVIVRTIGPTRPSRLLTPSTIKVCDLRK 60

Query: 61  LVAERSQLPIGNLKLILRGKILDDCKNDDDVFVRLNHGDSLTVAVKPKPPAEHLRDDSDD 120
           LVAE ++LPIGNLKLILRGKILDDCKN+DDV+VRLNHGDSLTVAVKPKPPAEHLRD+ D+
Sbjct: 61  LVAESNRLPIGNLKLILRGKILDDCKNEDDVYVRLNHGDSLTVAVKPKPPAEHLRDEFDE 120

Query: 121 DEDDLKFRLPESSSRLKKKIYNFLREKLKFPDILLMVIFSLSLKAWAAILIWFIMAPVAH 180
           DEDDLKFRLPESSSRLKKK+Y FLREKLKFPDILLMV+FSLSLK WAAILIWFIMAPVAH
Sbjct: 121 DEDDLKFRLPESSSRLKKKVYTFLREKLKFPDILLMVVFSLSLKGWAAILIWFIMAPVAH 180

Query: 181 SWDLGPLYYIVRKYMHVMETSLVFFLNYHGTTSNRIFYILGTGFCIILLNLGHRRSGEMS 240
           SWDLGPL                              YILGTGFCIILLNLGHRRSGEMS
Sbjct: 181 SWDLGPL------------------------------YILGTGFCIILLNLGHRRSGEMS 240

Query: 241 AYSIFNEGFRELPGTLNADRLDRDVRLGQF 271
           AYSIFNEGFRELPGTLNADRLDRDVRLGQF
Sbjct: 241 AYSIFNEGFRELPGTLNADRLDRDVRLGQF 240

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BLAST of Carg12078 vs. NCBI nr
Match: XP_022145366.1 (uncharacterized protein LOC111014834 [Momordica charantia])

HSP 1 Score: 405.6 bits (1041), Expect = 1.3e-109
Identity = 213/270 (78.89%), Postives = 221/270 (81.85%), Query Frame = 0


Query: 1   MAEIVEVPNFNRNISGGPNSSITYGNPPENTIEITIRTIGPARPSRLLVPSPIKVCDLRK 60
           MAEIVE  NFNRNI GG        NPPENT++I +RTIGPARPSRL VPSP+KV DLRK
Sbjct: 1   MAEIVEEHNFNRNIIGGGXXXXXNANPPENTVQIIVRTIGPARPSRLFVPSPVKVRDLRK 60

Query: 61  LVAERSQLPIGNLKLILRGKILDDCKNDDDVFVRLNHGDSLTVAVKPKPPAEHLRDDSDD 120
           LVAE +QLPIGNLKLILRGKILDD KNDDDV+VRLN G+SLTVAVKPKPPAEHLRD  DD
Sbjct: 61  LVAESNQLPIGNLKLILRGKILDDYKNDDDVYVRLNDGESLTVAVKPKPPAEHLRDGFDD 120

Query: 121 DEDDLKFRLPESSSRLKKKIYNFLREKLKFPDILLMVIFSLSLKAWAAILIWFIMAPVAH 180
           DEDDLKFRLPESSSRLKKKIYNFLREKLKFPDILLMVIFSLSLKAWAAILIWFIMAPVAH
Sbjct: 121 DEDDLKFRLPESSSRLKKKIYNFLREKLKFPDILLMVIFSLSLKAWAAILIWFIMAPVAH 180

Query: 181 SWDLGPLYYIVRKYMHVMETSLVFFLNYHGTTSNRIFYILGTGFCIILLNLGHRRSGEMS 240
           SWDLGPL                              YILGTGFCIILLNLGHR+SGEMS
Sbjct: 181 SWDLGPL------------------------------YILGTGFCIILLNLGHRKSGEMS 240

Query: 241 AYSIFNEGFRELPGTLNADRLDRDVRLGQF 271
           AYSIFNEGFRELPGTLNADRLDRDVRLGQF
Sbjct: 241 AYSIFNEGFRELPGTLNADRLDRDVRLGQF 240

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BLAST of Carg12078 vs. TAIR10
Match: AT2G35360.1 (ubiquitin family protein)

HSP 1 Score: 231.9 bits (590), Expect = 4.7e-61
Identity = 124/239 (51.88%), Postives = 156/239 (65.27%), Query Frame = 0


Query: 31  TIEITIRTIGPARPSRLLVPSPIKVCDLRKLVAERSQLPIGNLKLILRGKILDDCKNDDD 90
           T+EIT +TIGPARPS++ V S IK+ DLR  +AE+ + P+  L++ILRGK L D ++ DD
Sbjct: 17  TVEITYKTIGPARPSQIRVASHIKIRDLRNAIAEKGKFPVSTLRMILRGKALQDEEDGDD 76

Query: 91  VFVRLNHGDSLTVAVKPKPPAEHLRDDSDDDEDDLKFRLPESSSRLKKKIYNFLREKLKF 150
           ++V L   DS  VAV P PPA  +           KF+LP S+SR K+K+Y FLR KLK 
Sbjct: 77  LYVTLKDQDSFIVAVIPNPPA-GVESFXXXXXXXXKFKLPPSASRWKRKLYYFLRNKLKL 136

Query: 151 PDILLMVIFSLSLKAWAAILIWFIMAPVAHSWDLGPLYYIVRKYMHVMETSLVFFLNYHG 210
           PDI+LM +FSLSLK W  I +WFI+AP+AH WDLGP+                       
Sbjct: 137 PDIILMGLFSLSLKMWVIITLWFILAPIAHRWDLGPI----------------------- 196

Query: 211 TTSNRIFYILGTGFCIILLNLGHRRSGEMSAYSIFNEGFRELPGTLNADRLDRDVRLGQ 270
                  +ILGTGF IILLNLG R+ G++SAYSIFNE FRELPGT NADR+DRD+R GQ
Sbjct: 197 -------FILGTGFSIILLNLGKRQPGDVSAYSIFNEDFRELPGTYNADRIDRDIRAGQ 224

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BLAST of Carg12078 vs. TrEMBL
Match: tr|A0A0A0L1Y1|A0A0A0L1Y1_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G011840 PE=4 SV=1)

HSP 1 Score: 409.8 bits (1052), Expect = 4.6e-111
Identity = 209/270 (77.41%), Postives = 226/270 (83.70%), Query Frame = 0


Query: 1   MAEIVEVPNFNRNISGGPNSSITYGNPPENTIEITIRTIGPARPSRLLVPSPIKVCDLRK 60
           MAEIVE  NFNR+I+GG +SSI+   PP++T+E+ +RTIGP RPSRLL PS IKVCDLRK
Sbjct: 1   MAEIVEDSNFNRSITGGADSSISNRTPPQDTVEVIVRTIGPTRPSRLLTPSTIKVCDLRK 60

Query: 61  LVAERSQLPIGNLKLILRGKILDDCKNDDDVFVRLNHGDSLTVAVKPKPPAEHLRDDSDD 120
           LVAE ++LPIGNLKLILRGKILDDCKN+DDV+VRLNHGDSLTVAVKPKPPAEHLRD+ D+
Sbjct: 61  LVAESNRLPIGNLKLILRGKILDDCKNEDDVYVRLNHGDSLTVAVKPKPPAEHLRDEFDE 120

Query: 121 DEDDLKFRLPESSSRLKKKIYNFLREKLKFPDILLMVIFSLSLKAWAAILIWFIMAPVAH 180
           DEDDLKFRLPESSSRLKKK+Y FLREKLKFPDILLMV+FSLSLK WAAILIWFIMAPVAH
Sbjct: 121 DEDDLKFRLPESSSRLKKKVYTFLREKLKFPDILLMVVFSLSLKGWAAILIWFIMAPVAH 180

Query: 181 SWDLGPLYYIVRKYMHVMETSLVFFLNYHGTTSNRIFYILGTGFCIILLNLGHRRSGEMS 240
           SWDLGPL                              YILGTGFCIILLNLGHRRSGEMS
Sbjct: 181 SWDLGPL------------------------------YILGTGFCIILLNLGHRRSGEMS 240

Query: 241 AYSIFNEGFRELPGTLNADRLDRDVRLGQF 271
           AYSIFNEGFRELPGTLNADRLDRDVRLGQF
Sbjct: 241 AYSIFNEGFRELPGTLNADRLDRDVRLGQF 240

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BLAST of Carg12078 vs. TrEMBL
Match: tr|A0A1S4DY93|A0A1S4DY93_CUCME (uncharacterized protein LOC103490803 OS=Cucumis melo OX=3656 GN=LOC103490803 PE=4 SV=1)

HSP 1 Score: 397.9 bits (1021), Expect = 1.8e-107
Identity = 206/270 (76.30%), Postives = 220/270 (81.48%), Query Frame = 0


Query: 1   MAEIVEVPNFNRNISGGPNSSITYGNPPENTIEITIRTIGPARPSRLLVPSPIKVCDLRK 60
           MAEIVE  NFNRNIS          NPP++T+E+ +RTIGP RPSRLL PS IKVCDLRK
Sbjct: 1   MAEIVEDSNFNRNISN--------RNPPQDTVEVIVRTIGPTRPSRLLTPSTIKVCDLRK 60

Query: 61  LVAERSQLPIGNLKLILRGKILDDCKNDDDVFVRLNHGDSLTVAVKPKPPAEHLRDDSDD 120
           LVAE S+LPIGNLKLILRGKILDDCKN+DDV+VRLNHGDSLTVAVKPKPPAEHLRD+ D+
Sbjct: 61  LVAESSRLPIGNLKLILRGKILDDCKNEDDVYVRLNHGDSLTVAVKPKPPAEHLRDEFDE 120

Query: 121 DEDDLKFRLPESSSRLKKKIYNFLREKLKFPDILLMVIFSLSLKAWAAILIWFIMAPVAH 180
           DEDDLKFRLPESSSRLKKK+Y FLREKLKFPDILL+V+FSLSLK WAAIL+WFIMAPVAH
Sbjct: 121 DEDDLKFRLPESSSRLKKKVYTFLREKLKFPDILLVVVFSLSLKGWAAILLWFIMAPVAH 180

Query: 181 SWDLGPLYYIVRKYMHVMETSLVFFLNYHGTTSNRIFYILGTGFCIILLNLGHRRSGEMS 240
           SWDLGPL                              YILGTGFCIILLNLGHRRSGEMS
Sbjct: 181 SWDLGPL------------------------------YILGTGFCIILLNLGHRRSGEMS 232

Query: 241 AYSIFNEGFRELPGTLNADRLDRDVRLGQF 271
           AYSIFNEGFRELPGTLNADRLDRDVRLGQF
Sbjct: 241 AYSIFNEGFRELPGTLNADRLDRDVRLGQF 232

[Close]

BLAST of Carg12078 vs. TrEMBL
Match: tr|A0A2P2IWJ8|A0A2P2IWJ8_RHIMU (Uncharacterized protein OS=Rhizophora mucronata OX=61149 PE=4 SV=1)

HSP 1 Score: 299.3 bits (765), Expect = 8.8e-78
Identity = 156/281 (55.52%), Postives = 198/281 (70.46%), Query Frame = 0


Query: 1   MAEIVEVPNFNRNISGGPNSSITYGNPP-----------ENTIEITIRTIGPARPSRLLV 60
           M EIVE    N+N +   N  +  G              +N +EIT++TIGP+ PSRLLV
Sbjct: 1   MGEIVEEVEDNKNSNINSNGDVNNGEEARTRRRREIEDMKNMVEITLKTIGPSPPSRLLV 60

Query: 61  PSPIKVCDLRKLVAERSQLPIGNLKLILRGKILDDCKNDDDVFVRLNHGDSLTVAVKPKP 120
           PSPIKV DLRKL+AE ++LPI +LKLI RG +++D K+DDDV++RLN+ DS+ VAVKPKP
Sbjct: 61  PSPIKVRDLRKLIAENNRLPIESLKLIFRGNVVNDSKDDDDVYLRLNNNDSVMVAVKPKP 120

Query: 121 PAEHLRDDSDDDEDDLKFRLPESSSRLKKKIYNFLREKLKFPDILLMVIFSLSLKAWAAI 180
           PA+HL+D  D ++DDLKFRLP+S+SR K+K+Y+FL ++LK PDILLM +F+LSLK W  I
Sbjct: 121 PAKHLQDGFDFEDDDLKFRLPQSTSRWKRKLYSFLHDELKVPDILLMALFTLSLKVWVFI 180

Query: 181 LIWFIMAPVAHSWDLGPLYYIVRKYMHVMETSLVFFLNYHGTTSNRIFYILGTGFCIILL 240
           ++WFI+APVA+ WDLGPL                              YILGTGF II L
Sbjct: 181 ILWFILAPVAYRWDLGPL------------------------------YILGTGFSIIFL 240

Query: 241 NLGHRRSGEMSAYSIFNEGFRELPGTLNADRLDRDVRLGQF 271
           NLG R +G++SAYSIFNE FRELPGTLNADRLDRD+R+GQF
Sbjct: 241 NLGRREAGDLSAYSIFNEEFRELPGTLNADRLDRDIRVGQF 251

[Close]

BLAST of Carg12078 vs. TrEMBL
Match: tr|B9N2Q0|B9N2Q0_POPTR (Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_003G089400v3 PE=4 SV=1)

HSP 1 Score: 296.6 bits (758), Expect = 5.7e-77
Identity = 152/241 (63.07%), Postives = 183/241 (75.93%), Query Frame = 0


Query: 30  NTIEITIRTIGPARPSRLLVPSPIKVCDLRKLVAERSQLPIGNLKLILRGKILDDCKNDD 89
           N  EIT++TIGP+ PSRLL+PSPIKV DLRKLVAE   LPI NL+LILRG +L D +++D
Sbjct: 22  NMAEITVKTIGPSPPSRLLLPSPIKVRDLRKLVAENRHLPIENLRLILRGNVLHDSRDED 81

Query: 90  DVFVRLNHGDSLTVAVKPKPPAEHLRDDSDDDEDDLKFRLPESSSRLKKKIYNFLREKLK 149
           D  +RLN+GDSL VAVKPKPPA+HLRD  DDD+DDLKF+LP+S+SR K+++Y FL +KLK
Sbjct: 82  D--IRLNNGDSLIVAVKPKPPAKHLRDGFDDDDDDLKFQLPQSASRWKRRLYFFLHDKLK 141

Query: 150 FPDILLMVIFSLSLKAWAAILIWFIMAPVAHSWDLGPLYYIVRKYMHVMETSLVFFLNYH 209
            PDILLM +FSLSLKAWA  ++WFI+APVAH WDLGP+                      
Sbjct: 142 LPDILLMGLFSLSLKAWAVFILWFILAPVAHRWDLGPI---------------------- 201

Query: 210 GTTSNRIFYILGTGFCIILLNLGHRRSGEMSAYSIFNEGFRELPGTLNADRLDRDVRLGQ 269
                   YI+GTGF IILLNLG R++G++SAYSIFNE FRELPGTLNADRLDRD+R GQ
Sbjct: 202 --------YIIGTGFVIILLNLGRRQAGDLSAYSIFNEDFRELPGTLNADRLDRDIRAGQ 230

Query: 270 F 271
           F
Sbjct: 262 F 230

[Close]

BLAST of Carg12078 vs. TrEMBL
Match: tr|A0A2N9HMK5|A0A2N9HMK5_FAGSY (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS40731 PE=4 SV=1)

HSP 1 Score: 293.1 bits (749), Expect = 6.3e-76
Identity = 159/273 (58.24%), Postives = 190/273 (69.60%), Query Frame = 0


Query: 1   MAEIVEVPNFNRNISGGPNSSITYGNPPENTIEITIRTIGPARPSRLLVPSPIKVCDLRK 60
           M EI+E      N  GG  + I       N+++I +RTIGPARPSRL VPSPIKVC LRK
Sbjct: 1   MGEIIEEEELIVNSKGGEKAYI-----DTNSVDIILRTIGPARPSRLRVPSPIKVCHLRK 60

Query: 61  LVAERSQLPIGNLKLILRGKILDDCKNDDDVFVRLNHGDSLTVAVKPKPPAEHLRD--DS 120
           L+AE   LPI NL+LILRG +L DC+N DDV+++LN+GDSL VAVKPKPP +HLRD  D 
Sbjct: 61  LIAENDHLPIENLRLILRGNVLHDCQNGDDVYLQLNNGDSLIVAVKPKPPVKHLRDGFDX 120

Query: 121 DDDEDDLKFRLPESSSRLKKKIYNFLREKLKFPDILLMVIFSLSLKAWAAILIWFIMAPV 180
                 LKF+LP+SSS+ K+++Y+FL  KLK PDILLM IF+LSLKAWA I++WFI+APV
Sbjct: 121 XXXXXXLKFQLPQSSSQWKRRLYSFLHNKLKLPDILLMAIFTLSLKAWAIIVLWFILAPV 180

Query: 181 AHSWDLGPLYYIVRKYMHVMETSLVFFLNYHGTTSNRIFYILGTGFCIILLNLGHRRSGE 240
           AH WDLGPL                              YILGTGF II+LNLG R+ G+
Sbjct: 181 AHRWDLGPL------------------------------YILGTGFVIIVLNLGQRKPGD 238

Query: 241 MSAYSIFNEGFRELPGTLNADRLDRDVR--LGQ 270
           +SAYSIFNE FRELPGTLNADRLDRD+R  LGQ
Sbjct: 241 VSAYSIFNEDFRELPGTLNADRLDRDIRAELGQ 238

The following BLAST results are available for this feature:

BLAST of Carg12078 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022948058.1	2.4e-127	88.89	uncharacterized protein LOC111451749 [Cucurbita moschata]	[more]
XP_023520906.1	1.2e-123	86.30	uncharacterized protein LOC111784424 [Cucurbita pepo subsp. pepo]	[more]
XP_023005519.1	4.7e-123	86.67	uncharacterized protein LOC111498482 [Cucurbita maxima]	[more]
XP_004148728.1	7.0e-111	77.41	PREDICTED: uncharacterized protein LOC101223066 [Cucumis sativus] >KGN55783.1 hy...	[more]
XP_022145366.1	1.3e-109	78.89	uncharacterized protein LOC111014834 [Momordica charantia]	[more]

BLAST of Carg12078 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G35360.1	4.7e-61	51.88	ubiquitin family protein	[more]

BLAST of Carg12078 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Carg12078 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0L1Y1\|A0A0A0L1Y1_CUCSA	4.6e-111	77.41	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G011840 PE=4 SV=1	[more]
tr\|A0A1S4DY93\|A0A1S4DY93_CUCME	1.8e-107	76.30	uncharacterized protein LOC103490803 OS=Cucumis melo OX=3656 GN=LOC103490803 PE=...	[more]
tr\|A0A2P2IWJ8\|A0A2P2IWJ8_RHIMU	8.8e-78	55.52	Uncharacterized protein OS=Rhizophora mucronata OX=61149 PE=4 SV=1	[more]
tr\|B9N2Q0\|B9N2Q0_POPTR	5.7e-77	63.07	Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_003G089400v3 PE=...	[more]
tr\|A0A2N9HMK5\|A0A2N9HMK5_FAGSY	6.3e-76	58.24	Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS40731 PE=4 SV=1	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0005515	protein binding

Vocabulary: **INTERPRO**
Term	Definition
IPR029071	Ubiquitin-like_domsf
IPR000626	Ubiquitin_dom
IPR039159	SAYSD1
IPR019387	Uncharacterised_SAYSvFN

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0005515	protein binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg12078-RA	Carg12078-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR019387	Uncharacterised domain SAYSvFN	PFAM	PF10260	SAYSvFN	coord: 216..264 e-value: 2.5E-18 score: 65.7
None	No IPR available	GENE3D	G3DSA:3.10.20.90		coord: 20..111 e-value: 5.9E-7 score: 31.2
None	No IPR available	CDD	cd01769	UBL	coord: 46..84 e-value: 3.8753E-4 score: 36.4762
IPR039159	SAYSvFN domain-containing protein 1	PANTHER	PTHR13527	UNCHARACTERIZED	coord: 217..270 coord: 32..191
IPR000626	Ubiquitin domain	PROSITE	PS50053	UBIQUITIN_2	coord: 32..84 score: 11.203
IPR029071	Ubiquitin-like domain superfamily	SUPERFAMILY	SSF54236	Ubiquitin-like	coord: 28..97

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg12078	Csa3G011840	Cucumber (Chinese Long) v2	carcuB0592
Carg12078	MELO3C013865	Melon (DHL92) v3.5.1	carmeB0570
Carg12078	ClCG10G001830	Watermelon (Charleston Gray)	carwcgB0549
Carg12078	CSPI03G01870	Wild cucumber (PI 183967)	carcpiB0597
Carg12078	Cucsa.321680	Cucumber (Gy14) v1	carcgyB0642
Carg12078	CmaCh06G008450	Cucurbita maxima (Rimu)	carcmaB0791
Carg12078	CmoCh06G008700	Cucurbita moschata (Rifu)	carcmoB0770
Carg12078	Lsi07G012190	Bottle gourd (USVL1VR-Ls)	carlsiB513
Carg12078	CsGy3G001740	Cucumber (Gy14) v2	carcgybB0567
Carg12078	MELO3C013865.2	Melon (DHL92) v3.6.1	carmedB0577
Carg12078	CsaV3_3G001910	Cucumber (Chinese Long) v3	carcucB0599
Carg12078	Cla97C10G186440	Watermelon (97103) v2	carwmbB0586
Carg12078	Bhi11G000115	Wax gourd	carwgoB0670

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Carg12078	Silver-seed gourd	carcarB520
Carg12078	Cucurbita maxima (Rimu)	carcmaB0786
Carg12078	Cucurbita moschata (Rifu)	carcmoB0766
Carg12078	Cucurbita pepo (Zucchini)	carcpeB0802
Carg12078	Watermelon (97103) v1	carwmB0561