Carg11921 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg11921
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Homeobox protein ath1
Location	Cucurbita_argyrosperma_scaffold_036 : 814198 .. 814599 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTGCTGAGAAGACTTGGCAGGAACAGAAGTTTCAACAGAGAGAATCCAGATATTTTGATTATGATGATTGCAGTGGATCAGATAATAAGAGGACATGAGCAAGACAAAGGAGATGGCACAGAGAGGAAGGGCATGGGCCCTTTAAAGCCTGTAACAAAGAGTGAGTGGCTCTGCACCCAAGGGCAAATCTCTCTCTCTCCTCTCTCTCTCCTTCTCTCTCCCCACCCCCTGGTTTTCTCTTGTGCGGCTGTTGCTTCTTTCTATCTTTATCTAGTGGGTCCATTTCCTCCATCTCCACCGTCATGCAGAGTTCTCTTGTGGCCTCTTCACTCTCTTTCTTCCTTTTCATGGTTCTCTGAGATGGGTGTCATTCATTTTCCTGAGCTGTACGCATTTTAG

mRNA sequence

ATGGTGCTGAGAAGACTTGGCAGGAACAGAAGTTTCAACAGAGAGAATCCAGATATTTTGATTATGATGATTGCAGTGGATCAGATAATAAGAGGACATGAGCAAGACAAAGGAGATGGCACAGAGAGGAAGGGCATGGGCCCTTTAAAGCCTGTAACAAAGAGTGAGTGGCTCTGCACCCAAGGGCAAATCTCTCTCTCTCCTCTCTCTCTCCTTCTCTCTCCCCACCCCCTGGTTTTCTCTTGTGCGGCTGTTGCTTCTTTCTATCTTTATCTAGTGGGTCCATTTCCTCCATCTCCACCGTCATGCAGAGTTCTCTTGTGGCCTCTTCACTCTCTTTCTTCCTTTTCATGGTTCTCTGAGATGGGTGTCATTCATTTTCCTGAGCTGTACGCATTTTAG

Coding sequence (CDS)

ATGGTGCTGAGAAGACTTGGCAGGAACAGAAGTTTCAACAGAGAGAATCCAGATATTTTGATTATGATGATTGCAGTGGATCAGATAATAAGAGGACATGAGCAAGACAAAGGAGATGGCACAGAGAGGAAGGGCATGGGCCCTTTAAAGCCTGTAACAAAGAGTGAGTGGCTCTGCACCCAAGGGCAAATCTCTCTCTCTCCTCTCTCTCTCCTTCTCTCTCCCCACCCCCTGGTTTTCTCTTGTGCGGCTGTTGCTTCTTTCTATCTTTATCTAGTGGGTCCATTTCCTCCATCTCCACCGTCATGCAGAGTTCTCTTGTGGCCTCTTCACTCTCTTTCTTCCTTTTCATGGTTCTCTGAGATGGGTGTCATTCATTTTCCTGAGCTGTACGCATTTTAG

Protein sequence

MVLRRLGRNRSFNRENPDILIMMIAVDQIIRGHEQDKGDGTERKGMGPLKPVTKSEWLCTQGQISLSPLSLLLSPHPLVFSCAAVASFYLYLVGPFPPSPPSCRVLLWPLHSLSSFSWFSEMGVIHFPELYAF

Homology

[Close]

BLAST of Carg11921 vs. NCBI nr
Match: KGN62394.1 (hypothetical protein Csa_2G351750 [Cucumis sativus])

HSP 1 Score: 103.6 bits (257), Expect = 5.3e-19
Identity = 50/56 (89.29%), Postives = 52/56 (92.86%), Query Frame = 0


Query: 1  MVLRRLGRNRSFNRENPDILIMMIAVDQIIRGHEQDKGDGTERKGMGPLKPVTKSE 57
          MVLRR GRNR+FNRENPDILIMMIAVDQIIRG EQDKGDGTERKGMGPLKP TK +
Sbjct: 1  MVLRRPGRNRNFNRENPDILIMMIAVDQIIRGCEQDKGDGTERKGMGPLKPATKRD 56

[Close]

BLAST of Carg11921 vs. NCBI nr
Match: POE64703.1 (homeobox protein ath1 [Quercus suber])

HSP 1 Score: 80.9 bits (198), Expect = 3.7e-12
Identity = 39/54 (72.22%), Postives = 45/54 (83.33%), Query Frame = 0


Query: 1  MVLRRLGRNRSFNRENPDILIMMIAVDQIIRGHEQDKGDGTERKGMGPLKPVTK 55
          MVLRR G NRS NRENPDILIMMIA  QI+RG  +DKG+  E++GMGPLKPVT+
Sbjct: 1  MVLRRPGMNRSLNRENPDILIMMIAEQQIMRGGGEDKGEKREKEGMGPLKPVTQ 54

[Close]

BLAST of Carg11921 vs. NCBI nr
Match: POE64704.1 (homeobox protein ath1 [Quercus suber])

HSP 1 Score: 80.9 bits (198), Expect = 3.7e-12
Identity = 39/54 (72.22%), Postives = 45/54 (83.33%), Query Frame = 0


Query: 1  MVLRRLGRNRSFNRENPDILIMMIAVDQIIRGHEQDKGDGTERKGMGPLKPVTK 55
          MVLRR G NRS NRENPDILIMMIA  QI+RG  +DKG+  E++GMGPLKPVT+
Sbjct: 1  MVLRRPGMNRSLNRENPDILIMMIAEQQIMRGGGEDKGEKREKEGMGPLKPVTQ 54

[Close]

BLAST of Carg11921 vs. NCBI nr
Match: EXB66878.1 (hypothetical protein L484_019516 [Morus notabilis])

HSP 1 Score: 67.4 bits (163), Expect = 4.2e-08
Identity = 37/62 (59.68%), Postives = 44/62 (70.97%), Query Frame = 0


Query: 1  MVLRRLGRNRSFNRENPDILIMMIAVDQIIRGHEQDKGDGTERKGM-GPLKPVTKSEWLC 60
          MVLR  GRNRS++R NPDILIMMIA  QI+RG E DK    +R+G  GP K   ++EW C
Sbjct: 1  MVLRGPGRNRSWSRGNPDILIMMIAEKQIMRGGEDDK--EVQREGRDGPSKACNRNEWHC 60

Query: 61 TQ 62
          TQ
Sbjct: 61 TQ 60

[Close]

BLAST of Carg11921 vs. NCBI nr
Match: PNS92794.1 (hypothetical protein POPTR_018G054600v3 [Populus trichocarpa])

HSP 1 Score: 67.0 bits (162), Expect = 5.5e-08
Identity = 45/94 (47.87%), Postives = 55/94 (58.51%), Query Frame = 0


Query: 1  MVLRRLGRNRSFNRENPDILIMMIAVDQIIRGHEQDKGDGTERKGMGPLKPVTKSEWLCT 60
          MVLRR   NRS NRENPDILI+MIA +QI+RG E DK    ER+ MGP KP  +      
Sbjct: 1  MVLRRPAMNRSCNRENPDILIVMIADEQIMRGGEDDK----ERETMGPQKPAREMSGTAP 60

Query: 61 QGQI----SLSPLSLLLSPHPLVFSCAAVASFYL 91
          +  +    S   LSL +   PL +SC A+ S  L
Sbjct: 61 KSNLLPHHSFFFLSLSI---PLFYSCVALLSLSL 87

[Close]

BLAST of Carg11921 vs. TrEMBL
Match: tr|A0A0A0LN23|A0A0A0LN23_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G351750 PE=4 SV=1)

HSP 1 Score: 103.6 bits (257), Expect = 3.5e-19
Identity = 50/56 (89.29%), Postives = 52/56 (92.86%), Query Frame = 0


Query: 1  MVLRRLGRNRSFNRENPDILIMMIAVDQIIRGHEQDKGDGTERKGMGPLKPVTKSE 57
          MVLRR GRNR+FNRENPDILIMMIAVDQIIRG EQDKGDGTERKGMGPLKP TK +
Sbjct: 1  MVLRRPGRNRNFNRENPDILIMMIAVDQIIRGCEQDKGDGTERKGMGPLKPATKRD 56

[Close]

BLAST of Carg11921 vs. TrEMBL
Match: tr|A0A2P4I859|A0A2P4I859_QUESU (Homeobox protein ath1 OS=Quercus suber OX=58331 GN=CFP56_06318 PE=4 SV=1)

HSP 1 Score: 80.9 bits (198), Expect = 2.4e-12
Identity = 39/54 (72.22%), Postives = 45/54 (83.33%), Query Frame = 0


Query: 1  MVLRRLGRNRSFNRENPDILIMMIAVDQIIRGHEQDKGDGTERKGMGPLKPVTK 55
          MVLRR G NRS NRENPDILIMMIA  QI+RG  +DKG+  E++GMGPLKPVT+
Sbjct: 1  MVLRRPGMNRSLNRENPDILIMMIAEQQIMRGGGEDKGEKREKEGMGPLKPVTQ 54

[Close]

BLAST of Carg11921 vs. TrEMBL
Match: tr|A0A2P4I868|A0A2P4I868_QUESU (Homeobox protein ath1 OS=Quercus suber OX=58331 GN=CFP56_06318 PE=4 SV=1)

HSP 1 Score: 80.9 bits (198), Expect = 2.4e-12
Identity = 39/54 (72.22%), Postives = 45/54 (83.33%), Query Frame = 0


Query: 1  MVLRRLGRNRSFNRENPDILIMMIAVDQIIRGHEQDKGDGTERKGMGPLKPVTK 55
          MVLRR G NRS NRENPDILIMMIA  QI+RG  +DKG+  E++GMGPLKPVT+
Sbjct: 1  MVLRRPGMNRSLNRENPDILIMMIAEQQIMRGGGEDKGEKREKEGMGPLKPVTQ 54

[Close]

BLAST of Carg11921 vs. TrEMBL
Match: tr|W9RBQ4|W9RBQ4_9ROSA (Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_019516 PE=4 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 2.8e-08
Identity = 37/62 (59.68%), Postives = 44/62 (70.97%), Query Frame = 0


Query: 1  MVLRRLGRNRSFNRENPDILIMMIAVDQIIRGHEQDKGDGTERKGM-GPLKPVTKSEWLC 60
          MVLR  GRNRS++R NPDILIMMIA  QI+RG E DK    +R+G  GP K   ++EW C
Sbjct: 1  MVLRGPGRNRSWSRGNPDILIMMIAEKQIMRGGEDDK--EVQREGRDGPSKACNRNEWHC 60

Query: 61 TQ 62
          TQ
Sbjct: 61 TQ 60

[Close]

BLAST of Carg11921 vs. TrEMBL
Match: tr|A0A2K1WW84|A0A2K1WW84_POPTR (Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_018G054600v3 PE=4 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 3.6e-08
Identity = 45/94 (47.87%), Postives = 55/94 (58.51%), Query Frame = 0


Query: 1  MVLRRLGRNRSFNRENPDILIMMIAVDQIIRGHEQDKGDGTERKGMGPLKPVTKSEWLCT 60
          MVLRR   NRS NRENPDILI+MIA +QI+RG E DK    ER+ MGP KP  +      
Sbjct: 1  MVLRRPAMNRSCNRENPDILIVMIADEQIMRGGEDDK----ERETMGPQKPAREMSGTAP 60

Query: 61 QGQI----SLSPLSLLLSPHPLVFSCAAVASFYL 91
          +  +    S   LSL +   PL +SC A+ S  L
Sbjct: 61 KSNLLPHHSFFFLSLSI---PLFYSCVALLSLSL 87

The following BLAST results are available for this feature:

BLAST of Carg11921 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN62394.1	5.3e-19	89.29	hypothetical protein Csa_2G351750 [Cucumis sativus]	[more]
POE64703.1	3.7e-12	72.22	homeobox protein ath1 [Quercus suber]	[more]
POE64704.1	3.7e-12	72.22	homeobox protein ath1 [Quercus suber]	[more]
EXB66878.1	4.2e-08	59.68	hypothetical protein L484_019516 [Morus notabilis]	[more]
PNS92794.1	5.5e-08	47.87	hypothetical protein POPTR_018G054600v3 [Populus trichocarpa]	[more]

BLAST of Carg11921 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of Carg11921 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Carg11921 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0LN23\|A0A0A0LN23_CUCSA	3.5e-19	89.29	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G351750 PE=4 SV=1	[more]
tr\|A0A2P4I859\|A0A2P4I859_QUESU	2.4e-12	72.22	Homeobox protein ath1 OS=Quercus suber OX=58331 GN=CFP56_06318 PE=4 SV=1	[more]
tr\|A0A2P4I868\|A0A2P4I868_QUESU	2.4e-12	72.22	Homeobox protein ath1 OS=Quercus suber OX=58331 GN=CFP56_06318 PE=4 SV=1	[more]
tr\|W9RBQ4\|W9RBQ4_9ROSA	2.8e-08	59.68	Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_019516 PE=4 SV=1	[more]
tr\|A0A2K1WW84\|A0A2K1WW84_POPTR	3.6e-08	47.87	Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_018G054600v3 PE=...	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg11921-RA	Carg11921-RA	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg11921	Csa2G351750	Cucumber (Chinese Long) v2	carcuB0202
Carg11921	CSPI02G18040	Wild cucumber (PI 183967)	carcpiB0209
Carg11921	CmaCh05G000980	Cucurbita maxima (Rimu)	carcmaB0256
Carg11921	CsGy2G017980	Cucumber (Gy14) v2	carcgybB0195
Carg11921	CsaV3_2G025620	Cucumber (Chinese Long) v3	carcucB0209
Carg11921	Cla97C08G160660	Watermelon (97103) v2	carwmbB0190

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Carg11921	Silver-seed gourd	carcarB216
Carg11921	Silver-seed gourd	carcarB223
Carg11921	Silver-seed gourd	carcarB224
Carg11921	Cucumber (Gy14) v2	carcgybB0197
Carg11921	Cucumber (Gy14) v2	carcgybB0199
Carg11921	Cucumber (Gy14) v1	carcgyB0221
Carg11921	Cucumber (Gy14) v1	carcgyB0225
Carg11921	Cucurbita maxima (Rimu)	carcmaB0247
Carg11921	Cucurbita maxima (Rimu)	carcmaB0249
Carg11921	Cucurbita maxima (Rimu)	carcmaB0251
Carg11921	Cucurbita moschata (Rifu)	carcmoB0255
Carg11921	Cucurbita moschata (Rifu)	carcmoB0257
Carg11921	Cucurbita moschata (Rifu)	carcmoB0263
Carg11921	Cucurbita pepo (Zucchini)	carcpeB0263
Carg11921	Cucurbita pepo (Zucchini)	carcpeB0265
Carg11921	Cucurbita pepo (Zucchini)	carcpeB0268
Carg11921	Wild cucumber (PI 183967)	carcpiB0211
Carg11921	Wild cucumber (PI 183967)	carcpiB0214
Carg11921	Cucumber (Chinese Long) v2	carcuB0204
Carg11921	Cucumber (Chinese Long) v2	carcuB0207
Carg11921	Cucumber (Chinese Long) v3	carcucB0211
Carg11921	Bottle gourd (USVL1VR-Ls)	carlsiB162
Carg11921	Bottle gourd (USVL1VR-Ls)	carlsiB164
Carg11921	Melon (DHL92) v3.5.1	carmeB0185
Carg11921	Melon (DHL92) v3.5.1	carmeB0186
Carg11921	Melon (DHL92) v3.5.1	carmeB0187
Carg11921	Melon (DHL92) v3.6.1	carmedB0189
Carg11921	Melon (DHL92) v3.6.1	carmedB0190
Carg11921	Melon (DHL92) v3.6.1	carmedB0191
Carg11921	Watermelon (Charleston Gray)	carwcgB0177
Carg11921	Watermelon (Charleston Gray)	carwcgB0178
Carg11921	Watermelon (97103) v1	carwmB0172
Carg11921	Watermelon (97103) v1	carwmB0175
Carg11921	Watermelon (97103) v2	carwmbB0189
Carg11921	Wax gourd	carwgoB0231
Carg11921	Wax gourd	carwgoB0236