CSPI02G18040 (gene) Wild cucumber (PI 183967)

Overview
NameCSPI02G18040
Typegene
OrganismCucumis sativus (Wild cucumber (PI 183967))
DescriptionUnknown protein
LocationChr2 : 16809912 .. 16810169 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
GTCTGAAAAATGGTGCTGAGAAGACCTGGCAGGAACAGGAGTTTCAACAGAGAGAATCCAGATATTTTGATTATGATGATTGCAGTGGATCAGATAATAAGAGGTTGTGAGCAGGACAAAGGAGATGGCACAGAGAGGAAGGGGATGGGCCCTTTAAAGCCTGCAACAAAGAGTGAGTGGTTTCTGCATCCCAAGAGCTATGGTCTCTCTCCCTCTCTTTCTTGCTCTCCACCCCCTGGTTTTCTCTTGTGCGGCTGA

mRNA sequence

ATGGTGCTGAGAAGACCTGGCAGGAACAGGAGTTTCAACAGAGAGAATCCAGATATTTTGATTATGATGATTGCAGTGGATCAGATAATAAGAGGTTGTGAGCAGGACAAAGGAGATGGCACAGAGAGGAAGGGGATGGGCCCTTTAAAGCCTGCAACAAAGAGTGAGTGGTTTCTGCATCCCAAGAGCTATGGTCTCTCTCCCTCTCTTTCTTGCTCTCCACCCCCTGGTTTTCTCTTGTGCGGCTGA

Coding sequence (CDS)

ATGGTGCTGAGAAGACCTGGCAGGAACAGGAGTTTCAACAGAGAGAATCCAGATATTTTGATTATGATGATTGCAGTGGATCAGATAATAAGAGGTTGTGAGCAGGACAAAGGAGATGGCACAGAGAGGAAGGGGATGGGCCCTTTAAAGCCTGCAACAAAGAGTGAGTGGTTTCTGCATCCCAAGAGCTATGGTCTCTCTCCCTCTCTTTCTTGCTCTCCACCCCCTGGTTTTCTCTTGTGCGGCTGA
Homology
[Close]
BLAST of CSPI02G18040 vs. TrEMBL
Match: A0A0A0LN23_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G351750 PE=4 SV=1)

HSP 1 Score: 114.4 bits (285), Expect = 6.7e-23
Identity = 53/56 (94.64%), Postives = 55/56 (98.21%), Query Frame = 1 

Query: 1  MVLRRPGRNRSFNRENPDILIMMIAVDQIIRGCEQDKGDGTERKGMGPLKPATKSE 57
          MVLRRPGRNR+FNRENPDILIMMIAVDQIIRGCEQDKGDGTERKGMGPLKPATK +
Sbjct: 1  MVLRRPGRNRNFNRENPDILIMMIAVDQIIRGCEQDKGDGTERKGMGPLKPATKRD 56

[Close]
BLAST of CSPI02G18040 vs. TrEMBL
Match: A0A0R0JC99_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_06G051700 PE=4 SV=1)

HSP 1 Score: 71.2 bits (173), Expect = 6.5e-10
Identity = 38/54 (70.37%), Postives = 40/54 (74.07%), Query Frame = 1 

Query: 1  MVLRRPGRNRSFNRENPDILIMMIAVDQIIRGCEQDKGDGTERKGMGPLKPATK 55
          M LR P  NRS NRENPDIL MMIA  QIIRG E DK D  ERK MGP+KPAT+
Sbjct: 1  MFLRVPAMNRSLNRENPDILNMMIAGKQIIRGVEDDKRDQRERK-MGPVKPATQ 53

[Close]
BLAST of CSPI02G18040 vs. TrEMBL
Match: W9RBQ4_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_019516 PE=4 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 3.6e-08
Identity = 35/58 (60.34%), Postives = 42/58 (72.41%), Query Frame = 1 

Query: 1  MVLRRPGRNRSFNRENPDILIMMIAVDQIIRGCEQDKGDGTERKGM-GPLKPATKSEW 58
          MVLR PGRNRS++R NPDILIMMIA  QI+RG E DK    +R+G  GP K   ++EW
Sbjct: 1  MVLRGPGRNRSWSRGNPDILIMMIAEKQIMRGGEDDK--EVQREGRDGPSKACNRNEW 56

[Close]
BLAST of CSPI02G18040 vs. NCBI nr
Match: gi|700207275|gb|KGN62394.1| (hypothetical protein Csa_2G351750 [Cucumis sativus])

HSP 1 Score: 114.4 bits (285), Expect = 9.6e-23
Identity = 53/56 (94.64%), Postives = 55/56 (98.21%), Query Frame = 1 

Query: 1  MVLRRPGRNRSFNRENPDILIMMIAVDQIIRGCEQDKGDGTERKGMGPLKPATKSE 57
          MVLRRPGRNR+FNRENPDILIMMIAVDQIIRGCEQDKGDGTERKGMGPLKPATK +
Sbjct: 1  MVLRRPGRNRNFNRENPDILIMMIAVDQIIRGCEQDKGDGTERKGMGPLKPATKRD 56

[Close]
BLAST of CSPI02G18040 vs. NCBI nr
Match: gi|947103810|gb|KRH52193.1| (hypothetical protein GLYMA_06G051700 [Glycine max])

HSP 1 Score: 71.2 bits (173), Expect = 9.3e-10
Identity = 38/54 (70.37%), Postives = 40/54 (74.07%), Query Frame = 1 

Query: 1  MVLRRPGRNRSFNRENPDILIMMIAVDQIIRGCEQDKGDGTERKGMGPLKPATK 55
          M LR P  NRS NRENPDIL MMIA  QIIRG E DK D  ERK MGP+KPAT+
Sbjct: 1  MFLRVPAMNRSLNRENPDILNMMIAGKQIIRGVEDDKRDQRERK-MGPVKPATQ 53

[Close]
BLAST of CSPI02G18040 vs. NCBI nr
Match: gi|703101023|ref|XP_010097077.1| (hypothetical protein L484_019516 [Morus notabilis])

HSP 1 Score: 65.5 bits (158), Expect = 5.1e-08
Identity = 35/58 (60.34%), Postives = 42/58 (72.41%), Query Frame = 1 

Query: 1  MVLRRPGRNRSFNRENPDILIMMIAVDQIIRGCEQDKGDGTERKGM-GPLKPATKSEW 58
          MVLR PGRNRS++R NPDILIMMIA  QI+RG E DK    +R+G  GP K   ++EW
Sbjct: 1  MVLRGPGRNRSWSRGNPDILIMMIAEKQIMRGGEDDK--EVQREGRDGPSKACNRNEW 56

The following BLAST results are available for this feature:
BLAST of CSPI02G18040 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CSPI02G18040 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LN23_CUCSA6.7e-2394.64Uncharacterized protein OS=Cucumis sativus GN=Csa_2G351750 PE=4 SV=1[more]
A0A0R0JC99_SOYBN6.5e-1070.37Uncharacterized protein OS=Glycine max GN=GLYMA_06G051700 PE=4 SV=1[more]
W9RBQ4_9ROSA3.6e-0860.34Uncharacterized protein OS=Morus notabilis GN=L484_019516 PE=4 SV=1[more]
BLAST of CSPI02G18040 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CSPI02G18040 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700207275|gb|KGN62394.1|9.6e-2394.64hypothetical protein Csa_2G351750 [Cucumis sativus][more]
gi|947103810|gb|KRH52193.1|9.3e-1070.37hypothetical protein GLYMA_06G051700 [Glycine max][more]
gi|703101023|ref|XP_010097077.1|5.1e-0860.34hypothetical protein L484_019516 [Morus notabilis][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
biological_process GO:0006355 regulation of transcription, DNA-templated
biological_process GO:1901564 organonitrogen compound metabolic process
biological_process GO:0044702 single organism reproductive process
biological_process GO:0008299 isoprenoid biosynthetic process
biological_process GO:0009653 anatomical structure morphogenesis
biological_process GO:0048367 shoot system development
biological_process GO:0048608 reproductive structure development
biological_process GO:0009791 post-embryonic development
biological_process GO:0032787 monocarboxylic acid metabolic process
biological_process GO:0008610 lipid biosynthetic process
biological_process GO:0051186 cofactor metabolic process
biological_process GO:0044255 cellular lipid metabolic process
biological_process GO:0006520 cellular amino acid metabolic process
biological_process GO:0046394 carboxylic acid biosynthetic process
biological_process GO:0048513 animal organ development
cellular_component GO:0005575 cellular_component
cellular_component GO:0005634 nucleus
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0003677 DNA binding
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI02G18040.1CSPI02G18040.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CSPI02G18040Csa2G351750Cucumber (Chinese Long) v2cpicuB065
CSPI02G18040Lsi08G015770Bottle gourd (USVL1VR-Ls)cpilsiB141
CSPI02G18040CsaV3_2G025620Cucumber (Chinese Long) v3cpicucB081
CSPI02G18040Cla97C08G160660Watermelon (97103) v2cpiwmbB166
CSPI02G18040CmaCh12G006340Cucurbita maxima (Rimu)cmacpiB175
CSPI02G18040CmaCh05G000980Cucurbita maxima (Rimu)cmacpiB793
CSPI02G18040CmoCh05G001070Cucurbita moschata (Rifu)cmocpiB782
CSPI02G18040Cp4.1LG07g06190Cucurbita pepo (Zucchini)cpecpiB820
CSPI02G18040Cp4.1LG11g00120Cucurbita pepo (Zucchini)cpecpiB092
CSPI02G18040CsGy2G017980Cucumber (Gy14) v2cgybcpiB057
CSPI02G18040Carg11921Silver-seed gourdcarcpiB0209
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CSPI02G18040Cucurbita pepo (Zucchini)cpecpiB541
CSPI02G18040Bottle gourd (USVL1VR-Ls)cpilsiB114
CSPI02G18040Melon (DHL92) v3.6.1cpimedB114
CSPI02G18040Melon (DHL92) v3.6.1cpimedB142
CSPI02G18040Cucumber (Gy14) v2cgybcpiB163
CSPI02G18040Silver-seed gourdcarcpiB0352
CSPI02G18040Silver-seed gourdcarcpiB0732
CSPI02G18040Silver-seed gourdcarcpiB0806
CSPI02G18040Cucumber (Chinese Long) v3cpicucB103
CSPI02G18040Watermelon (97103) v2cpiwmbB141
CSPI02G18040Wax gourdcpiwgoB159
CSPI02G18040Wax gourdcpiwgoB198
CSPI02G18040Wild cucumber (PI 183967)cpicpiB074
CSPI02G18040Cucumber (Gy14) v1cgycpiB578
CSPI02G18040Cucurbita maxima (Rimu)cmacpiB011
CSPI02G18040Cucurbita maxima (Rimu)cmacpiB439
CSPI02G18040Cucurbita moschata (Rifu)cmocpiB002
CSPI02G18040Cucurbita moschata (Rifu)cmocpiB160
CSPI02G18040Cucumber (Chinese Long) v2cpicuB080
CSPI02G18040Melon (DHL92) v3.5.1cpimeB118
CSPI02G18040Melon (DHL92) v3.5.1cpimeB148
CSPI02G18040Watermelon (Charleston Gray)cpiwcgB147
CSPI02G18040Watermelon (Charleston Gray)cpiwcgB172
CSPI02G18040Watermelon (97103) v1cpiwmB116
CSPI02G18040Watermelon (97103) v1cpiwmB132