Carg11617 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg11617
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Unknown protein
Location	Cucurbita_argyrosperma_scaffold_035 : 100589 .. 102635 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGAGAGGTAATATTGAGAAAAGGGATGAGTTGGTTAGGAAGAAAACCATTGCTACAGACTTGGGTTCTAGTTTGCCAAGATTGTATGGTCAGGAAATAGCAGATAGAGTAATGGCAGCCATCCTAAAGGGATGAGTTTGCTTTGCTTGTTATTTATGATTTTAGCTGGGTTCTTATGAATCAATACTTGACATTATTTGTTTCATACATTTGTATCTCTGGTCGATGTTTTTATGTATCATGTCGGAGGGGATAAAAAGATTATAAGACTAAGTATTTAAAATACAATCTATACAAAAAATTACTCAGTGACTAAAAGTAAACCATGGCACATTTGATTGTATTTTTCAACTCTGACAGATGGTAGGATCACTTATTCAATATTTTTAAATACTTAAACCATGTTTAACATTTTCTCAAGTAAAGATAAGGTCCCATGAACATAAGTACATACGACGGAGTTGTTTTTTATTGTTGTTAACCTGTCATTTTTTTATGATTCTATTATTATGTTTGAAAATAAATTTATGAACTTTTTATGTTTGTGGCAACGTTTAAGTGAATTGTTTTAATGGTTTTTCACACACTACAGTTATGACATACATGTAATAAAAAAAAAAAAAAAAAGGAAGGAAATAGTAGGATAATCACGATCATTCATCTTAATTATTATAGTGGTTATATTTAAAATTTTGAAAATTAAAGTAATTTTTTAATTAGTTTATAGTTTTGATGTATTTGAACATAAATATTAAATTTGAAAATTGAATTAGAATATTTTCTTGGATGGTATATAATTTTCCATATTTTATTATATAATTATTTTATGTGATTCTAATTTTTCCCTTTATTTTAAGAAAATTAAGAAAACAATTAGAAAAATTAGTATGTACATAATTAAGTAATTTACTGAATTTGACAAATTATAAATAAAGTTAAATTAGATATAAAGAAAACCGTAATTATTTATGCACAATATATATTTACATAAAAAAATTTATCAGCTTTGTATTAATGTAATCCTGATAATTTTTTAAAAAGGAATGTTATTATTATTATTTTTATCTTAAAATAGTAAAATATAAATAATAAATAATAAATAAATACAATAAAGTGCAAGATAATAAATTAAAATCTTAAAATTCAGTAACTTCCAACCAAACACAAATACCATAACAAATTCAGTTCATGAATTTACGGTTGCACACATTAAGTGCATAATATTGACTATTCTCTAAAATATTAATTATTTTAATTAAAATCCAATTTTATGGCAACTTTCTTTATTTTAATTAAAATCCAATTTTATGGCAACTTTTTGTTTATTTGTATTTGTAATTTATGAAATTAGTTTTTTTTATAATTATTTTATGGACATTTTGTTAAACTCTAATTCTAATTTTTTTTTTTAACTAAACCGTCAACCTACAAATTTTGAGTTGGAAGTTAAAAAAATTATTTTTAAGAGTTATTAGATAATAAATAATAAAAATTCATTATAAAAATAAAATAAATACATGTATATATATAATTGTATCATGAGCAAAAATATATATTTTAAAAATATCAATAAATTCAAATTAGTTCCATTCAATCCAATATATAAAGTGTCATTTTTTTAAACCGACCCAAATAAGTTTATAGCCCAACCAAAAATTATAGTGAGTTGGGTTGGTTGAAATTTTTAAACATCCCAAACAAATGCAATTTGGAGTTCAAACGATCAAAGTCATCTAGACCCGTGATCGAGTAGGGAAGCCCTTTGGTTGATAAAAAAGAAAATAAAAATTGGAGCATTTAATGAAAGGAATGTGGGATTTGAAAACATAGAGAATGGAGGGTAAGTAATTTGTTGATTGATGGTTACCAAATATAGAGAGTGTGTATGGATAAGGGGTTGAAATGGTTGTGTGTAGGTCGTAGGCGTAAGAAGAGCGATGGAATTTGGGCGTGTCCAGAAGTCTTCTTACAAATGAGTGCAGCACGCGCAGGGTCTTTGGTCGCTACTCCAGCTCACTCTCCACCCACCTTCCAAACAACCTAA

mRNA sequence

ATGGAGAGAGGTAATATTGAGAAAAGGGATGAGTTGGTTAGGAAGAAAACCATTGCTACAGACTTGGGTTCTAGTTTGCCAAGATTGTATGGTCGTAGGCGTAAGAAGAGCGATGGAATTTGGGCGTGTCCAGAAGTCTTCTTACAAATGAGTGCAGCACGCGCAGGGTCTTTGGTCGCTACTCCAGCTCACTCTCCACCCACCTTCCAAACAACCTAA

Coding sequence (CDS)

ATGGAGAGAGGTAATATTGAGAAAAGGGATGAGTTGGTTAGGAAGAAAACCATTGCTACAGACTTGGGTTCTAGTTTGCCAAGATTGTATGGTCGTAGGCGTAAGAAGAGCGATGGAATTTGGGCGTGTCCAGAAGTCTTCTTACAAATGAGTGCAGCACGCGCAGGGTCTTTGGTCGCTACTCCAGCTCACTCTCCACCCACCTTCCAAACAACCTAA

Protein sequence

MERGNIEKRDELVRKKTIATDLGSSLPRLYGRRRKKSDGIWACPEVFLQMSAARAGSLVATPAHSPPTFQTT

Homology

[Close]

BLAST of Carg11617 vs. NCBI nr
Match: XP_022948072.1 (red chlorophyll catabolite reductase [Cucurbita moschata])

HSP 1 Score: 57.4 bits (137), Expect = 2.3e-05
Identity = 27/32 (84.38%), Postives = 30/32 (93.75%), Query Frame = 0


Query: 1   MERGNIEKRDELVRKKTIATDLGSSLPRLYGR 33
           MERGNIEKRDELV+KKTI  DLGSSLPRL+G+
Sbjct: 269 MERGNIEKRDELVKKKTIDIDLGSSLPRLFGQ 300

[Close]

BLAST of Carg11617 vs. NCBI nr
Match: XP_023521266.1 (red chlorophyll catabolite reductase-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 57.4 bits (137), Expect = 2.3e-05
Identity = 27/32 (84.38%), Postives = 30/32 (93.75%), Query Frame = 0


Query: 1   MERGNIEKRDELVRKKTIATDLGSSLPRLYGR 33
           MERGNIEKRDELV+KKTI  DLGSSLPRL+G+
Sbjct: 269 MERGNIEKRDELVKKKTIDIDLGSSLPRLFGQ 300

[Close]

BLAST of Carg11617 vs. NCBI nr
Match: XP_023006823.1 (LOW QUALITY PROTEIN: red chlorophyll catabolite reductase, chloroplastic-like [Cucurbita maxima])

HSP 1 Score: 56.6 bits (135), Expect = 4.0e-05
Identity = 27/32 (84.38%), Postives = 29/32 (90.62%), Query Frame = 0


Query: 1   MERGNIEKRDELVRKKTIATDLGSSLPRLYGR 33
           MERGNIEKRDELV KKTI  DLGSSLPRL+G+
Sbjct: 163 MERGNIEKRDELVEKKTIDIDLGSSLPRLFGQ 194

[Close]

BLAST of Carg11617 vs. NCBI nr
Match: XP_023007060.1 (red chlorophyll catabolite reductase-like [Cucurbita maxima])

HSP 1 Score: 56.6 bits (135), Expect = 4.0e-05
Identity = 27/32 (84.38%), Postives = 29/32 (90.62%), Query Frame = 0


Query: 1   MERGNIEKRDELVRKKTIATDLGSSLPRLYGR 33
           MERGNIEKRDELV KKTI  DLGSSLPRL+G+
Sbjct: 269 MERGNIEKRDELVEKKTIDIDLGSSLPRLFGQ 300

[Close]

BLAST of Carg11617 vs. NCBI nr
Match: XP_023521264.1 (red chlorophyll catabolite reductase, chloroplastic-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 56.2 bits (134), Expect = 5.2e-05
Identity = 26/32 (81.25%), Postives = 30/32 (93.75%), Query Frame = 0


Query: 1   MERGNIEKRDELVRKKTIATDLGSSLPRLYGR 33
           M+RGNIEKRDELV+KKTI  DLGSSLPRL+G+
Sbjct: 164 MDRGNIEKRDELVKKKTIDIDLGSSLPRLFGQ 195

The following BLAST results are available for this feature:

BLAST of Carg11617 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022948072.1	2.3e-05	84.38	red chlorophyll catabolite reductase [Cucurbita moschata]	[more]
XP_023521266.1	2.3e-05	84.38	red chlorophyll catabolite reductase-like [Cucurbita pepo subsp. pepo]	[more]
XP_023006823.1	4.0e-05	84.38	LOW QUALITY PROTEIN: red chlorophyll catabolite reductase, chloroplastic-like [C...	[more]
XP_023007060.1	4.0e-05	84.38	red chlorophyll catabolite reductase-like [Cucurbita maxima]	[more]
XP_023521264.1	5.2e-05	81.25	red chlorophyll catabolite reductase, chloroplastic-like [Cucurbita pepo subsp. ...	[more]

BLAST of Carg11617 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of Carg11617 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Carg11617 vs. TrEMBL


Match Name	E-value	Identity	Description

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0051743	red chlorophyll catabolite reductase activity

Vocabulary: **INTERPRO**
Term	Definition
IPR009439	RCC_reductase

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0051743	red chlorophyll catabolite reductase activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg11617-RA	Carg11617-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR009439	Red chlorophyll catabolite reductase	PFAM	PF06405	RCC_reductase	coord: 2..32 e-value: 9.5E-6 score: 24.9

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg11617	CmoCh02G005530	Cucurbita moschata (Rifu)	carcmoB1422
Carg11617	Cp4.1LG05g11370	Cucurbita pepo (Zucchini)	carcpeB1476

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Carg11617	Wax gourd	carwgoB1245
Carg11617	Cucumber (Gy14) v2	carcgybB1039
Carg11617	Cucumber (Gy14) v2	carcgybB1042
Carg11617	Cucumber (Gy14) v1	carcgyB1177
Carg11617	Cucumber (Gy14) v1	carcgyB1178
Carg11617	Cucurbita maxima (Rimu)	carcmaB1466
Carg11617	Wild cucumber (PI 183967)	carcpiB1093
Carg11617	Cucumber (Chinese Long) v2	carcuB1070
Carg11617	Cucumber (Chinese Long) v3	carcucB1103
Carg11617	Cucumber (Chinese Long) v3	carcucB1106
Carg11617	Bottle gourd (USVL1VR-Ls)	carlsiB963
Carg11617	Bottle gourd (USVL1VR-Ls)	carlsiB969
Carg11617	Melon (DHL92) v3.5.1	carmeB1025
Carg11617	Melon (DHL92) v3.5.1	carmeB1028
Carg11617	Melon (DHL92) v3.6.1	carmedB1038
Carg11617	Melon (DHL92) v3.6.1	carmedB1041
Carg11617	Melon (DHL92) v3.6.1	carmedB1042
Carg11617	Watermelon (Charleston Gray)	carwcgB1029
Carg11617	Watermelon (Charleston Gray)	carwcgB1034
Carg11617	Watermelon (97103) v1	carwmB1063
Carg11617	Watermelon (97103) v1	carwmB1058
Carg11617	Watermelon (97103) v2	carwmbB1116
Carg11617	Watermelon (97103) v2	carwmbB1120