Carg11516 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg11516
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Alpha/beta hydrolase fold-3
Location	Cucurbita_argyrosperma_scaffold_083 : 383267 .. 383470 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTTGTGTTCGTGGGAGGATTCGATCCATTGAAGGATTGGCAGAGGAAATATTATGAATGGCTGAAGAAAAGTGGAAAGAAAGTGGATTTGATCGAATATCCGAAGATGATTCATGCATTTTATTTGTTTCCAGAATTGCCTCACTGTGCTCTGCTCATTAATCAGCTCACAGACTTCGTTTCCAAATGTACGCTCAAATGA

mRNA sequence

ATGGTTGTGTTCGTGGGAGGATTCGATCCATTGAAGGATTGGCAGAGGAAATATTATGAATGGCTGAAGAAAAGTGGAAAGAAAGTGGATTTGATCGAATATCCGAAGATGATTCATGCATTTTATTTGTTTCCAGAATTGCCTCACTGTGCTCTGCTCATTAATCAGCTCACAGACTTCGTTTCCAAATGTACGCTCAAATGA

Coding sequence (CDS)

ATGGTTGTGTTCGTGGGAGGATTCGATCCATTGAAGGATTGGCAGAGGAAATATTATGAATGGCTGAAGAAAAGTGGAAAGAAAGTGGATTTGATCGAATATCCGAAGATGATTCATGCATTTTATTTGTTTCCAGAATTGCCTCACTGTGCTCTGCTCATTAATCAGCTCACAGACTTCGTTTCCAAATGTACGCTCAAATGA

Protein sequence

MVVFVGGFDPLKDWQRKYYEWLKKSGKKVDLIEYPKMIHAFYLFPELPHCALLINQLTDFVSKCTLK

Homology

[Close]

BLAST of Carg11516 vs. NCBI nr
Match: XP_022143557.1 (probable carboxylesterase 18 [Momordica charantia])

HSP 1 Score: 114.8 bits (286), Expect = 1.2e-22
Identity = 52/66 (78.79%), Postives = 58/66 (87.88%), Query Frame = 0


Query: 2   VVFVGGFDPLKDWQRKYYEWLKKSGKKVDLIEYPKMIHAFYLFPELPHCALLINQLTDFV 61
           VVFVGGFDPLKD QR+YY+WLK+SGKKVDLIEYP MIHAFYLFPELP  + LINQ+ DFV
Sbjct: 101 VVFVGGFDPLKDRQRRYYKWLKESGKKVDLIEYPNMIHAFYLFPELPESSKLINQVRDFV 160

Query: 62  SKCTLK 68
           S C +K
Sbjct: 161 SNCMVK 166

[Close]

BLAST of Carg11516 vs. NCBI nr
Match: XP_008451245.1 (PREDICTED: probable carboxylesterase 18 [Cucumis melo])

HSP 1 Score: 114.4 bits (285), Expect = 1.5e-22
Identity = 50/66 (75.76%), Postives = 58/66 (87.88%), Query Frame = 0


Query: 2   VVFVGGFDPLKDWQRKYYEWLKKSGKKVDLIEYPKMIHAFYLFPELPHCALLINQLTDFV 61
           VVFVGGFDPLKDWQR+YY WLKK+GKKVDLIEYP MIHAFYLFPE+   ++L+NQ+ +FV
Sbjct: 281 VVFVGGFDPLKDWQRRYYAWLKKNGKKVDLIEYPNMIHAFYLFPEIGESSVLMNQVREFV 340

Query: 62  SKCTLK 68
           SKC  K
Sbjct: 341 SKCMEK 346

[Close]

BLAST of Carg11516 vs. NCBI nr
Match: XP_004148971.1 (PREDICTED: probable carboxylesterase 18 [Cucumis sativus] >KGN44731.1 hypothetical protein Csa_7G375730 [Cucumis sativus])

HSP 1 Score: 109.0 bits (271), Expect = 6.3e-21
Identity = 46/66 (69.70%), Postives = 58/66 (87.88%), Query Frame = 0


Query: 2   VVFVGGFDPLKDWQRKYYEWLKKSGKKVDLIEYPKMIHAFYLFPELPHCALLINQLTDFV 61
           +VFVGGFDPLKDWQR+YY+WLKK+GK V+LIEYP MIHAFYLFPE+   ++L+N++ +FV
Sbjct: 279 LVFVGGFDPLKDWQRRYYDWLKKNGKIVELIEYPNMIHAFYLFPEISESSVLMNEVREFV 338

Query: 62  SKCTLK 68
           SKC  K
Sbjct: 339 SKCMEK 344

[Close]

BLAST of Carg11516 vs. NCBI nr
Match: XP_021890247.1 (probable carboxylesterase 18 [Carica papaya])

HSP 1 Score: 108.6 bits (270), Expect = 8.3e-21
Identity = 47/62 (75.81%), Postives = 53/62 (85.48%), Query Frame = 0


Query: 2   VVFVGGFDPLKDWQRKYYEWLKKSGKKVDLIEYPKMIHAFYLFPELPHCALLINQLTDFV 61
           VVFVGGFDPLKDWQR+YYEWLKKSGK+  LIEYP M+HAFY+FPELP    LI Q+ DFV
Sbjct: 275 VVFVGGFDPLKDWQRRYYEWLKKSGKEASLIEYPNMVHAFYVFPELPEATQLIMQVRDFV 334

Query: 62  SK 64
           +K
Sbjct: 335 TK 336

[Close]

BLAST of Carg11516 vs. NCBI nr
Match: XP_006426384.1 (probable carboxylesterase 18 [Citrus clementina] >ESR39624.1 hypothetical protein CICLE_v10026049mg [Citrus clementina])

HSP 1 Score: 107.1 bits (266), Expect = 2.4e-20
Identity = 46/62 (74.19%), Postives = 54/62 (87.10%), Query Frame = 0


Query: 2   VVFVGGFDPLKDWQRKYYEWLKKSGKKVDLIEYPKMIHAFYLFPELPHCALLINQLTDFV 61
           VV VGGFDPL+DWQR+YYEWLKKSGK+  LIEYP MIHAFY+FPELP  + LI+Q+ DF+
Sbjct: 265 VVVVGGFDPLQDWQRRYYEWLKKSGKEATLIEYPNMIHAFYVFPELPEASQLISQIKDFI 324

Query: 62  SK 64
           SK
Sbjct: 325 SK 326

[Close]

BLAST of Carg11516 vs. TAIR10
Match: AT5G23530.1 (carboxyesterase 18)

HSP 1 Score: 94.4 bits (233), Expect = 2.9e-20
Identity = 41/62 (66.13%), Postives = 46/62 (74.19%), Query Frame = 0


Query: 2   VVFVGGFDPLKDWQRKYYEWLKKSGKKVDLIEYPKMIHAFYLFPELPHCALLINQLTDFV 61
           +V V GFDPLKDWQR YYEWLK  GKK  LIEYP M HAFY+FPELP    LI ++ DFV
Sbjct: 267 MVVVAGFDPLKDWQRSYYEWLKLCGKKATLIEYPNMFHAFYIFPELPEAGQLIMRIKDFV 326

Query: 62  SK 64
            +
Sbjct: 327 DE 328

[Close]

BLAST of Carg11516 vs. TAIR10
Match: AT5G06570.1 (alpha/beta-Hydrolases superfamily protein)

HSP 1 Score: 39.7 bits (91), Expect = 8.6e-04
Identity = 22/64 (34.38%), Postives = 36/64 (56.25%), Query Frame = 0


Query: 1   MVVFVGGFDPLKDWQRKY-YEWLKKSGKKVDLIEYPKMIHAFYL-FPELPHCALLINQLT 60
           M+V VGG + L+D  ++Y Y+  K  GK+VD IE+    H FY  +P       ++  + 
Sbjct: 263 MLVIVGGSELLRDRAKEYAYKLKKMGGKRVDYIEFENKEHGFYSNYPSSEAAEQVLRIIG 322

Query: 61  DFVS 63
           DF++
Sbjct: 323 DFMN 326

[Close]

BLAST of Carg11516 vs. Swiss-Prot
Match: sp|Q9LT10|CXE18_ARATH (Probable carboxylesterase 18 OS=Arabidopsis thaliana OX=3702 GN=CXE18 PE=1 SV=1)

HSP 1 Score: 94.4 bits (233), Expect = 5.3e-19
Identity = 41/62 (66.13%), Postives = 46/62 (74.19%), Query Frame = 0


Query: 2   VVFVGGFDPLKDWQRKYYEWLKKSGKKVDLIEYPKMIHAFYLFPELPHCALLINQLTDFV 61
           +V V GFDPLKDWQR YYEWLK  GKK  LIEYP M HAFY+FPELP    LI ++ DFV
Sbjct: 267 MVVVAGFDPLKDWQRSYYEWLKLCGKKATLIEYPNMFHAFYIFPELPEAGQLIMRIKDFV 326

Query: 62  SK 64
            +
Sbjct: 327 DE 328

[Close]

BLAST of Carg11516 vs. TrEMBL
Match: tr|A0A1S3BR05|A0A1S3BR05_CUCME (probable carboxylesterase 18 OS=Cucumis melo OX=3656 GN=LOC103492592 PE=4 SV=1)

HSP 1 Score: 114.4 bits (285), Expect = 1.0e-22
Identity = 50/66 (75.76%), Postives = 58/66 (87.88%), Query Frame = 0


Query: 2   VVFVGGFDPLKDWQRKYYEWLKKSGKKVDLIEYPKMIHAFYLFPELPHCALLINQLTDFV 61
           VVFVGGFDPLKDWQR+YY WLKK+GKKVDLIEYP MIHAFYLFPE+   ++L+NQ+ +FV
Sbjct: 281 VVFVGGFDPLKDWQRRYYAWLKKNGKKVDLIEYPNMIHAFYLFPEIGESSVLMNQVREFV 340

Query: 62  SKCTLK 68
           SKC  K
Sbjct: 341 SKCMEK 346

[Close]

BLAST of Carg11516 vs. TrEMBL
Match: tr|A0A0A0KA95|A0A0A0KA95_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G375730 PE=4 SV=1)

HSP 1 Score: 109.0 bits (271), Expect = 4.2e-21
Identity = 46/66 (69.70%), Postives = 58/66 (87.88%), Query Frame = 0


Query: 2   VVFVGGFDPLKDWQRKYYEWLKKSGKKVDLIEYPKMIHAFYLFPELPHCALLINQLTDFV 61
           +VFVGGFDPLKDWQR+YY+WLKK+GK V+LIEYP MIHAFYLFPE+   ++L+N++ +FV
Sbjct: 279 LVFVGGFDPLKDWQRRYYDWLKKNGKIVELIEYPNMIHAFYLFPEISESSVLMNEVREFV 338

Query: 62  SKCTLK 68
           SKC  K
Sbjct: 339 SKCMEK 344

[Close]

BLAST of Carg11516 vs. TrEMBL
Match: tr|V4UJX3|V4UJX3_9ROSI (Uncharacterized protein OS=Citrus clementina OX=85681 GN=CICLE_v10026049mg PE=4 SV=1)

HSP 1 Score: 107.1 bits (266), Expect = 1.6e-20
Identity = 46/62 (74.19%), Postives = 54/62 (87.10%), Query Frame = 0


Query: 2   VVFVGGFDPLKDWQRKYYEWLKKSGKKVDLIEYPKMIHAFYLFPELPHCALLINQLTDFV 61
           VV VGGFDPL+DWQR+YYEWLKKSGK+  LIEYP MIHAFY+FPELP  + LI+Q+ DF+
Sbjct: 265 VVVVGGFDPLQDWQRRYYEWLKKSGKEATLIEYPNMIHAFYVFPELPEASQLISQIKDFI 324

Query: 62  SK 64
           SK
Sbjct: 325 SK 326

[Close]

BLAST of Carg11516 vs. TrEMBL
Match: tr|A0A2H5NES6|A0A2H5NES6_CITUN (Uncharacterized protein OS=Citrus unshiu OX=55188 GN=CUMW_038620 PE=4 SV=1)

HSP 1 Score: 107.1 bits (266), Expect = 1.6e-20
Identity = 46/62 (74.19%), Postives = 54/62 (87.10%), Query Frame = 0


Query: 2   VVFVGGFDPLKDWQRKYYEWLKKSGKKVDLIEYPKMIHAFYLFPELPHCALLINQLTDFV 61
           VV VGGFDPL+DWQR+YYEWLKKSGK+  LIEYP MIHAFY+FPELP  + LI+Q+ DF+
Sbjct: 265 VVVVGGFDPLQDWQRRYYEWLKKSGKEATLIEYPNMIHAFYVFPELPEASQLISQIKDFI 324

Query: 62  SK 64
           SK
Sbjct: 325 SK 326

[Close]

BLAST of Carg11516 vs. TrEMBL
Match: tr|V7C0S7|V7C0S7_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris OX=3885 GN=PHAVU_004G073600g PE=4 SV=1)

HSP 1 Score: 104.8 bits (260), Expect = 7.9e-20
Identity = 44/61 (72.13%), Postives = 53/61 (86.89%), Query Frame = 0


Query: 2   VVFVGGFDPLKDWQRKYYEWLKKSGKKVDLIEYPKMIHAFYLFPELPHCALLINQLTDFV 61
           +VFVGGFDPL+DWQR+YYEWL+KSGKK  LIEYP MIHAFY+FPELP    LI+Q+ DF+
Sbjct: 267 LVFVGGFDPLQDWQRRYYEWLRKSGKKAQLIEYPTMIHAFYIFPELPEAFQLISQVKDFI 326

Query: 62  S 63
           +
Sbjct: 327 A 327

The following BLAST results are available for this feature:

BLAST of Carg11516 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022143557.1	1.2e-22	78.79	probable carboxylesterase 18 [Momordica charantia]	[more]
XP_008451245.1	1.5e-22	75.76	PREDICTED: probable carboxylesterase 18 [Cucumis melo]	[more]
XP_004148971.1	6.3e-21	69.70	PREDICTED: probable carboxylesterase 18 [Cucumis sativus] >KGN44731.1 hypothetic...	[more]
XP_021890247.1	8.3e-21	75.81	probable carboxylesterase 18 [Carica papaya]	[more]
XP_006426384.1	2.4e-20	74.19	probable carboxylesterase 18 [Citrus clementina] >ESR39624.1 hypothetical protei...	[more]

BLAST of Carg11516 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G23530.1	2.9e-20	66.13	carboxyesterase 18	[more]
AT5G06570.1	8.6e-04	34.38	alpha/beta-Hydrolases superfamily protein	[more]

BLAST of Carg11516 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q9LT10\|CXE18_ARATH	5.3e-19	66.13	Probable carboxylesterase 18 OS=Arabidopsis thaliana OX=3702 GN=CXE18 PE=1 SV=1	[more]

BLAST of Carg11516 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3BR05\|A0A1S3BR05_CUCME	1.0e-22	75.76	probable carboxylesterase 18 OS=Cucumis melo OX=3656 GN=LOC103492592 PE=4 SV=1	[more]
tr\|A0A0A0KA95\|A0A0A0KA95_CUCSA	4.2e-21	69.70	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G375730 PE=4 SV=1	[more]
tr\|V4UJX3\|V4UJX3_9ROSI	1.6e-20	74.19	Uncharacterized protein OS=Citrus clementina OX=85681 GN=CICLE_v10026049mg PE=4 ...	[more]
tr\|A0A2H5NES6\|A0A2H5NES6_CITUN	1.6e-20	74.19	Uncharacterized protein OS=Citrus unshiu OX=55188 GN=CUMW_038620 PE=4 SV=1	[more]
tr\|V7C0S7\|V7C0S7_PHAVU	7.9e-20	72.13	Uncharacterized protein OS=Phaseolus vulgaris OX=3885 GN=PHAVU_004G073600g PE=4 ...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0016787	hydrolase activity

Vocabulary: **Biological Process**
Term	Definition
GO:0008152	metabolic process

Vocabulary: **INTERPRO**
Term	Definition
IPR029058	AB_hydrolase
IPR013094	AB_hydrolase_3

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008152	metabolic process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0016787	hydrolase activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg11516-RA	Carg11516-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR013094	Alpha/beta hydrolase fold-3	PFAM	PF07859	Abhydrolase_3	coord: 2..42 e-value: 4.0E-10 score: 39.8
IPR029058	Alpha/Beta hydrolase fold	GENE3D	G3DSA:3.40.50.1820		coord: 1..66 e-value: 5.5E-15 score: 57.4
IPR029058	Alpha/Beta hydrolase fold	SUPERFAMILY	SSF53474	alpha/beta-Hydrolases	coord: 2..63
None	No IPR available	PANTHER	PTHR23024	MEMBER OF 'GDXG' FAMILY OF LIPOLYTIC ENZYMES	coord: 2..63
None	No IPR available	PANTHER	PTHR23024:SF331	SUBFAMILY NOT NAMED	coord: 2..63

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg11516	Cla97C09G170440	Watermelon (97103) v2	carwmbB0012
Carg11516	Bhi09G000974	Wax gourd	carwgoB0015

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Carg11516	Carg05112	Silver-seed gourd	carcarB009

The following block(s) are covering this gene:


Gene	Organism	Block
Carg11516	Cucumber (Gy14) v2	carcgybB0012
Carg11516	Cucumber (Gy14) v1	carcgyB0013
Carg11516	Cucurbita maxima (Rimu)	carcmaB0020
Carg11516	Cucurbita maxima (Rimu)	carcmaB0021
Carg11516	Cucurbita moschata (Rifu)	carcmoB0021
Carg11516	Cucurbita moschata (Rifu)	carcmoB0022
Carg11516	Cucurbita pepo (Zucchini)	carcpeB0023
Carg11516	Cucurbita pepo (Zucchini)	carcpeB0018
Carg11516	Wild cucumber (PI 183967)	carcpiB0013
Carg11516	Cucumber (Chinese Long) v2	carcuB0013
Carg11516	Cucumber (Chinese Long) v3	carcucB0013
Carg11516	Bottle gourd (USVL1VR-Ls)	carlsiB012
Carg11516	Melon (DHL92) v3.5.1	carmeB0012
Carg11516	Melon (DHL92) v3.6.1	carmedB0013
Carg11516	Watermelon (Charleston Gray)	carwcgB0012
Carg11516	Watermelon (97103) v1	carwmB0014