Carg11505 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg11505
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	ribonuclease 2-like
Location	Cucurbita_argyrosperma_scaffold_083 : 312898 .. 315896 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

CGAGCCAATTGCCGATCAGGCTATAAGCCCTCTCTCCGCCAATCCCCAAAATCAAGCGGTTCCCATGATTCCGTTCATCTTTTTTCTTCAATTCAGCCTCTCTGTTGCATCCACTTCCTTGAATGATTCTTCGGCGGATGCGATAATTTCGCAGATCAAGGAGGGACGAGAACAGAGAGAATTGGATTACTTCAAATTGACGCTGCAATGGCCTGGCACTGTCTGCAAGGGCACCGACAGCTGTTGTTCCTCCAACGCATGCTGTAATAGGTGAGTGCTTCTTCTCTTTTTCCTACAACATTCCCCGTTTAGAATCCTCGATTACTCGTTACTTTCGTTTGAGGTTCTACAGCTAAGTAACTTCTACAGCCTTTTCACATTCCCCGTTTGTGAATTAATTAATTAAGCTGTAGAAGTTACCACATTCCCCGTTTAGAACAGACCAAATAGGAGAGATCCTACAAATTTAAAATTATGCATCCAAACCTCTTCAATCAATTCTATAATATAAAAACCATCGGAAAATTCTTGATATTTTATAATAACAAGATTCTATCATCTATCATTTATAGTAAATCCCTTATGGAAAGATTTACAGACGTGAAAAATATAAGTTCAATCAATTCTATAAGGGGGGGAATCATGGTAATGATCAAAGAGGAGAAACATTTTGCCATTTGAATCTTTGTTAGGCATAATAAGTGGACAGAAACCGAAGAAATCTTCTTCGATAATCTTGGAGTGGATATTTGTAATCTAAGGTGAAGTTTTTTGTTCATTGTTAGAGTAGCTATAGACTTTGTTAGATTTCATGCCCTTCTGCCATCCCTTATGGTTTATAATGTATCTTTTTGTTCCATCTATTAATTTTGGAACACTTCTTCGTAAGTTACTTTCAAGTTGTAGTAGCTTTCCAATGATCTTTCATGGATTTAAATTTGAGCGTCTTCTTGCACCATCATCTACATTCTGTGTTATTGTTATTAGGCAATTGGGTACTTCGACATTGAAAGAATTACCATGGAGATGACCCCAAAAAGTAGTTGAGAAAAGGTTATTAGACCATTGATAGAACAAAAATTTCAAGTTTATGGTTGTGAAAGTTTTGCCTATAGGTCATGTTCGGTATTTTCTTGAGCGTTCTTCTGAATTCTCTTGATGTTCTTTTTCATTGTTCATAAACTTATGCTCATTTATCCTTTCTCTGGTAGATCTGGTGCTTTTGCTGACTTTACAATTCGTAAGTTGAAGCCACAACTGCATTTCTTCCACAACGTATAAGTGCAAGCGGTGTTTATAAGCTTAATCACAGAGCATATCAATATCGATTCCCTAAGAATAAACTTGGAGTTGTTCATTTGTTTGAGAATTTTCTTTATATAAATATAAAATATTAAGAGTTCGTTATTGTATGACTATGAATTTATAATCTGTTGCTTGCGTGATAGATGGGTTATGGCCTGATTATAATGATGGAACATGGCCTTCATGTTGCAATGGAACAAGTTTTGATGAGAAGGAGGTGCGTTGTTATTAAAGTTAGGCTGTTGATATTCATGATATGATCCATAGTTGAAGAGCTAAAACAAAACTTTGTCAGCCTATTGGCTTTATTTTGATCATTGTGCCGTTTACTTTGTTCTTGTGTGGCACAAGGCATTTTTGTATCATCCTGCATAATTTTATCTTGCAGATTCATTCCTTACTTGATCCCCTGAAGAAATATTGGCCATCTTTGAGTTGTTCATCTTCAACTTGCCATGGTGGGAAGGGATCATTTTGGGCTCATGAGGTGACCATCACTAATACAAGATATATTTGTGTAAATTTGCACTGATGGTACCCAAGTTTTAACTGATTCTTTTTTCCCCACTTTTTGTTCCTGTGATGGCTGAATTGGCTACTGCATTGACTAGTGGGGTAATAATCCTTGGCTTCTCTCACTTGGATACTATAATCTATATTCTATAATGCATTGAGGCTTTACTTCTTTTATTGAATTTTTCTGATTGGCAAAGGATAATTTTTTAGATTTTTCTGATGAACTATAAAGATTTTAAAAGGCGTTCACATCATGGCCATATATGATCTATGCATTGCATAATGATATCCTATACAAAAGTGTATTTTTCTATCATTTACCTTGGACCAATGATACTCAACTTTGATGTTGGCCCCTCGTATCTACGTAGAGTTTGTTCTTGATTGGATGTGACAGCATATGTCTTTTTGGTAATTTGCTACGTTTTAGGACACAGGAAATAGTTTGATATGTTCATATTATTGTTTGATGCCAATGTTGGAATCAAAGCATGTTTAATGTTCTTCCCATGCTTTGGTTTTCTCATATTGTATTTCTATGGCATGCAGAGAAGCATGGAACTTGTTCTTATCCAGTAATTCGGGATGAGTACAGTTACTTTTTAACTACTCTCAACGTCTTTTTCAAATATAATGTCACTGTAAGTTGTGGAATGATGCTACACTTTCTACATCAGCTCTAATATCAATAGATCAGATCCTGCTGCTTGCAGTTTAGTTCCCCATTTTTGCTCTTGTCGATTAATTTTACTGATGACTTTCCTTTGGAAATCGAGTATAACTCAATGAATAAGACACATCTTACTACTTGAAAGGCTAACGATTTGACCAAATCCTACCATTATTGAACCCAAAAGAGAGAATAAACTACGTATTTGATTACTGAAACACATCTATGGAAATTGAAACAACTTGGCTCCGTTTGGTAACCATTTAGCTTTTCGTTTTTGGTTTTTGAAAATTAGCTTATAAACACCGCTGGCACTTATAAGTTTCCTTGATTTGCTATTCATATAATCTATTTAAAACTTTATTATTTCTTATTTTGCATTGGAATGAGTTTGGTTACTAATGAACATGTTATGTCCCAGAAAGTTCTGAATGATGCTGGATATCTACCTTCAAATACCGAGAAATATCCTCTTGGAGGAATCGTTTCAGCAGTTGAGAATGCTTTT

mRNA sequence

CGAGCCAATTGCCGATCAGGCTATAAGCCCTCTCTCCGCCAATCCCCAAAATCAAGCGGTTCCCATGATTCCGTTCATCTTTTTTCTTCAATTCAGCCTCTCTGTTGCATCCACTTCCTTGAATGATTCTTCGGCGGATGCGATAATTTCGCAGATCAAGGAGGGACGAGAACAGAGAGAATTGGATTACTTCAAATTGACGCTGCAATGGCCTGGCACTGTCTGCAAGGGCACCGACAGCTGTTGTTCCTCCAACGCATGCTGTAATAGATCTGGTGCTTTTGCTGACTTTACAATTCATGGGTTATGGCCTGATTATAATGATGGAACATGGCCTTCATGTTGCAATGGAACAAGTTTTGATGAGAAGGAGATTCATTCCTTACTTGATCCCCTGAAGAAATATTGGCCATCTTTGAGTTGTTCATCTTCAACTTGCCATGGTGGGAAGGGATCATTTTGGGCTCATGAGAAAGTTCTGAATGATGCTGGATATCTACCTTCAAATACCGAGAAATATCCTCTTGGAGGAATCGTTTCAGCAGTTGAGAATGCTTTT

Coding sequence (CDS)

ATGATTCCGTTCATCTTTTTTCTTCAATTCAGCCTCTCTGTTGCATCCACTTCCTTGAATGATTCTTCGGCGGATGCGATAATTTCGCAGATCAAGGAGGGACGAGAACAGAGAGAATTGGATTACTTCAAATTGACGCTGCAATGGCCTGGCACTGTCTGCAAGGGCACCGACAGCTGTTGTTCCTCCAACGCATGCTGTAATAGATCTGGTGCTTTTGCTGACTTTACAATTCATGGGTTATGGCCTGATTATAATGATGGAACATGGCCTTCATGTTGCAATGGAACAAGTTTTGATGAGAAGGAGATTCATTCCTTACTTGATCCCCTGAAGAAATATTGGCCATCTTTGAGTTGTTCATCTTCAACTTGCCATGGTGGGAAGGGATCATTTTGGGCTCATGAGAAAGTTCTGAATGATGCTGGATATCTACCTTCAAATACCGAGAAATATCCTCTTGGAGGAATCGTTTCAGCAGTTGAGAATGCTTTT

Protein sequence

MIPFIFFLQFSLSVASTSLNDSSADAIISQIKEGREQRELDYFKLTLQWPGTVCKGTDSCCSSNACCNRSGAFADFTIHGLWPDYNDGTWPSCCNGTSFDEKEIHSLLDPLKKYWPSLSCSSSTCHGGKGSFWAHEKVLNDAGYLPSNTEKYPLGGIVSAVENAF

Homology

[Close]

BLAST of Carg11505 vs. NCBI nr
Match: XP_022953173.1 (ribonuclease 2-like isoform X2 [Cucurbita moschata])

HSP 1 Score: 355.5 bits (911), Expect = 9.6e-95
Identity = 164/165 (99.39%), Postives = 165/165 (100.00%), Query Frame = 0


Query: 1   MIPFIFFLQFSLSVASTSLNDSSADAIISQIKEGREQRELDYFKLTLQWPGTVCKGTDSC 60
           MIPFIFFLQF+LSVASTSLNDSSADAIISQIKEGREQRELDYFKLTLQWPGTVCKGTDSC
Sbjct: 1   MIPFIFFLQFALSVASTSLNDSSADAIISQIKEGREQRELDYFKLTLQWPGTVCKGTDSC 60

Query: 61  CSSNACCNRSGAFADFTIHGLWPDYNDGTWPSCCNGTSFDEKEIHSLLDPLKKYWPSLSC 120
           CSSNACCNRSGAFADFTIHGLWPDYNDGTWPSCCNGTSFDEKEIHSLLDPLKKYWPSLSC
Sbjct: 61  CSSNACCNRSGAFADFTIHGLWPDYNDGTWPSCCNGTSFDEKEIHSLLDPLKKYWPSLSC 120

Query: 121 SSSTCHGGKGSFWAHEKVLNDAGYLPSNTEKYPLGGIVSAVENAF 166
           SSSTCHGGKGSFWAHEKVLNDAGYLPSNTEKYPLGGIVSAVENAF
Sbjct: 121 SSSTCHGGKGSFWAHEKVLNDAGYLPSNTEKYPLGGIVSAVENAF 165

[Close]

BLAST of Carg11505 vs. NCBI nr
Match: XP_023547522.1 (ribonuclease 2-like isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 350.1 bits (897), Expect = 4.0e-93
Identity = 161/165 (97.58%), Postives = 163/165 (98.79%), Query Frame = 0


Query: 1   MIPFIFFLQFSLSVASTSLNDSSADAIISQIKEGREQRELDYFKLTLQWPGTVCKGTDSC 60
           MIPFIF LQF+LSVAST LNDSSADAIISQIKEGREQRELDYFKLTLQWPGTVCKGTDSC
Sbjct: 1   MIPFIFLLQFTLSVASTPLNDSSADAIISQIKEGREQRELDYFKLTLQWPGTVCKGTDSC 60

Query: 61  CSSNACCNRSGAFADFTIHGLWPDYNDGTWPSCCNGTSFDEKEIHSLLDPLKKYWPSLSC 120
           CSSNACCNRSGAFADFTIHGLWPDYNDGTWPSCCNGTSFDEKEIH+LLDPLKKYWPSLSC
Sbjct: 61  CSSNACCNRSGAFADFTIHGLWPDYNDGTWPSCCNGTSFDEKEIHTLLDPLKKYWPSLSC 120

Query: 121 SSSTCHGGKGSFWAHEKVLNDAGYLPSNTEKYPLGGIVSAVENAF 166
           SSSTCHGGKGSFWAHEKVLNDAGYLPSNTEKYPLGGIVSAVENAF
Sbjct: 121 SSSTCHGGKGSFWAHEKVLNDAGYLPSNTEKYPLGGIVSAVENAF 165

[Close]

BLAST of Carg11505 vs. NCBI nr
Match: XP_022953172.1 (ribonuclease 2-like isoform X1 [Cucurbita moschata])

HSP 1 Score: 339.0 bits (868), Expect = 9.3e-90
Identity = 164/197 (83.25%), Postives = 165/197 (83.76%), Query Frame = 0


Query: 1   MIPFIFFLQFSLSVASTSLNDSSADAIISQIKEGREQRELDYFKLTLQWPGTVCKGTDSC 60
           MIPFIFFLQF+LSVASTSLNDSSADAIISQIKEGREQRELDYFKLTLQWPGTVCKGTDSC
Sbjct: 1   MIPFIFFLQFALSVASTSLNDSSADAIISQIKEGREQRELDYFKLTLQWPGTVCKGTDSC 60

Query: 61  CSSNACCNRSGAFADFTIHGLWPDYNDGTWPSCCNGTSFDEKEIHSLLDPLKKYWPSLSC 120
           CSSNACCNRSGAFADFTIHGLWPDYNDGTWPSCCNGTSFDEKEIHSLLDPLKKYWPSLSC
Sbjct: 61  CSSNACCNRSGAFADFTIHGLWPDYNDGTWPSCCNGTSFDEKEIHSLLDPLKKYWPSLSC 120

Query: 121 SSSTCHGGKGSFWAHE--------------------------------KVLNDAGYLPSN 166
           SSSTCHGGKGSFWAHE                                KVLNDAGYLPSN
Sbjct: 121 SSSTCHGGKGSFWAHEWEKHGTCSYPVIRDEYSYFLTTLNVFFKYNVTKVLNDAGYLPSN 180

[Close]

BLAST of Carg11505 vs. NCBI nr
Match: XP_023547521.1 (ribonuclease 2-like isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 333.6 bits (854), Expect = 3.9e-88
Identity = 161/197 (81.73%), Postives = 163/197 (82.74%), Query Frame = 0


Query: 1   MIPFIFFLQFSLSVASTSLNDSSADAIISQIKEGREQRELDYFKLTLQWPGTVCKGTDSC 60
           MIPFIF LQF+LSVAST LNDSSADAIISQIKEGREQRELDYFKLTLQWPGTVCKGTDSC
Sbjct: 1   MIPFIFLLQFTLSVASTPLNDSSADAIISQIKEGREQRELDYFKLTLQWPGTVCKGTDSC 60

Query: 61  CSSNACCNRSGAFADFTIHGLWPDYNDGTWPSCCNGTSFDEKEIHSLLDPLKKYWPSLSC 120
           CSSNACCNRSGAFADFTIHGLWPDYNDGTWPSCCNGTSFDEKEIH+LLDPLKKYWPSLSC
Sbjct: 61  CSSNACCNRSGAFADFTIHGLWPDYNDGTWPSCCNGTSFDEKEIHTLLDPLKKYWPSLSC 120

Query: 121 SSSTCHGGKGSFWAHE--------------------------------KVLNDAGYLPSN 166
           SSSTCHGGKGSFWAHE                                KVLNDAGYLPSN
Sbjct: 121 SSSTCHGGKGSFWAHEWEKHGTCSYPVIRDEYSYFLTTLNVFFKYNVTKVLNDAGYLPSN 180

[Close]

BLAST of Carg11505 vs. NCBI nr
Match: XP_022991824.1 (ribonuclease 2-like [Cucurbita maxima])

HSP 1 Score: 325.1 bits (832), Expect = 1.4e-85
Identity = 158/197 (80.20%), Postives = 162/197 (82.23%), Query Frame = 0


Query: 1   MIPFIFFLQFSLSVASTSLNDSSADAIISQIKEGREQRELDYFKLTLQWPGTVCKGTDSC 60
           MIPFIF LQF++SVASTSLNDSS DAIISQIK+GREQRELDYFKLTLQWPGTVCKGTDSC
Sbjct: 1   MIPFIFLLQFTVSVASTSLNDSS-DAIISQIKDGREQRELDYFKLTLQWPGTVCKGTDSC 60

Query: 61  CSSNACCNRSGAFADFTIHGLWPDYNDGTWPSCCNGTSFDEKEIHSLLDPLKKYWPSLSC 120
           CSSNACCNRSG FADFTIHGLWPDYNDGTWPSCCNGTSFDEKEIH+LLDPLKKYWPSLSC
Sbjct: 61  CSSNACCNRSGGFADFTIHGLWPDYNDGTWPSCCNGTSFDEKEIHTLLDPLKKYWPSLSC 120

Query: 121 SSSTCHGGKGSFWAHE--------------------------------KVLNDAGYLPSN 166
           SSSTCHGGKGSFWAHE                                KVLNDAGYLPSN
Sbjct: 121 SSSTCHGGKGSFWAHEWEKHGTCSYPVIRDEYSYFLTTLNVFFKYNVTKVLNDAGYLPSN 180

[Close]

BLAST of Carg11505 vs. TAIR10
Match: AT2G39780.1 (ribonuclease 2)

HSP 1 Score: 196.8 bits (499), Expect = 1.0e-50
Identity = 93/168 (55.36%), Postives = 108/168 (64.29%), Query Frame = 0


Query: 31  IKEGREQRELDYFKLTLQWPGTVCKGTDSCCSSNACCNRSGAFADFTIHGLWPDYNDGTW 90
           I+  R QRE DYF L+LQWPGT C+GT  CCS NACC  S A   FTIHGLWPDYNDG+W
Sbjct: 23  IELNRSQREFDYFALSLQWPGTYCRGTRHCCSKNACCRGSDAPTQFTIHGLWPDYNDGSW 82

Query: 91  PSCCNGTSFDEKEIHSLLDPLKKYWPSLSCSS-STCHGGKGSFWAHE------------- 150
           PSCC  + F EKEI +L+D L+KYWPSLSC S S+C+GGKGSFW HE             
Sbjct: 83  PSCCYRSDFKEKEISTLMDGLEKYWPSLSCGSPSSCNGGKGSFWGHEWEKHGTCSSPVFH 142

Query: 151 -------------------KVLNDAGYLPSNTEKYPLGGIVSAVENAF 166
                               VL  AGY+ SN+EKYPLGGIV+A++NAF
Sbjct: 143 DEYNYFLTTLNLYLKHNVTDVLYQAGYVASNSEKYPLGGIVTAIQNAF 190

[Close]

BLAST of Carg11505 vs. TAIR10
Match: AT1G14220.1 (Ribonuclease T2 family protein)

HSP 1 Score: 96.7 bits (239), Expect = 1.5e-20
Identity = 46/103 (44.66%), Postives = 59/103 (57.28%), Query Frame = 0


Query: 35  REQRELDYFKLTLQWPGTVCKGTDSCCSSNACCNRSGAFADFTIHGLWPDYNDGTWPSCC 94
           R Q + D+F   LQWPG  C  + +CC   +        ADF IHGLWP+YN G+WPS C
Sbjct: 23  RPQEDFDFFYFVLQWPGAYCDTSRACCYPTS----GKPAADFGIHGLWPNYNGGSWPSNC 82

Query: 95  NGTS-FDEKEIHSLLDPLKKYWPSLSCSSSTCHGGKGSFWAHE 137
           +  S FD  +I  L+  LKK WP+LSC S+       +FW HE
Sbjct: 83  DPDSQFDRSQISDLVSSLKKNWPTLSCPSNEGF----NFWEHE 117

[Close]

BLAST of Carg11505 vs. TAIR10
Match: AT2G02990.1 (ribonuclease 1)

HSP 1 Score: 90.9 bits (224), Expect = 8.0e-19
Identity = 43/99 (43.43%), Postives = 55/99 (55.56%), Query Frame = 0


Query: 39  ELDYFKLTLQWPGTVCKGTDSCCSSNACCNRSGAFADFTIHGLWPDYNDGTWPSCCNGTS 98
           + D+F    QWPG+ C     CC  N+        ADF IHGLWP+Y DGT+PS C+ + 
Sbjct: 29  DFDFFYFVQQWPGSYCDTQKKCCYPNS----GKPAADFGIHGLWPNYKDGTYPSNCDASK 88

Query: 99  -FDEKEIHSLLDPLKKYWPSLSCSSSTCHGGKGSFWAHE 137
            FD   I  LL  +KK WP+L+C S    G   +FW HE
Sbjct: 89  PFDSSTISDLLTSMKKSWPTLACPS----GSGEAFWEHE 119

[Close]

BLAST of Carg11505 vs. TAIR10
Match: AT1G26820.1 (ribonuclease 3)

HSP 1 Score: 88.6 bits (218), Expect = 4.0e-18
Identity = 43/100 (43.00%), Postives = 54/100 (54.00%), Query Frame = 0


Query: 38  RELDYFKLTLQWPGTVCKGTDSCCSSNACCNRSGAFADFTIHGLWPDYNDGTWPSCCNGT 97
           ++ D+F   LQWPG  C    SCC            ADF IHGLWP+Y  G WP  CN  
Sbjct: 20  QDFDFFYFVLQWPGAYCDSRHSCCYPQT----GKPAADFGIHGLWPNYKTGGWPQNCNPD 79

Query: 98  S-FDEKEIHSLLDPLKKYWPSLSCSSSTCHGGKGSFWAHE 137
           S FD+  +  L+  L++ WP+LSC S+   G K  FW HE
Sbjct: 80  SRFDDLRVSDLMSDLQREWPTLSCPSN--DGMK--FWTHE 111

[Close]

BLAST of Carg11505 vs. TAIR10
Match: AT1G14210.1 (Ribonuclease T2 family protein)

HSP 1 Score: 74.3 bits (181), Expect = 7.7e-14
Identity = 32/107 (29.91%), Postives = 53/107 (49.53%), Query Frame = 0


Query: 31  IKEGREQRELDYFKLTLQWPGTVCKGTDSCCSSNACCNRSGAFADFTIHGLWPDYNDGTW 90
           +   + + + ++F     WPG +C     CC       +    +DF IHGLWP +N+GTW
Sbjct: 17  VSSSQTEPDFNFFYWVNYWPGAICDSQKGCCPP----TKGNTASDFIIHGLWPQFNNGTW 76

Query: 91  PSCCNGTS-FDEKEIHSLLDPLKKYWPSLSCSSSTCHGGKGSFWAHE 137
           P+ C+ T+ FD  +I  L+  ++K W      +  C   + + W HE
Sbjct: 77  PAFCDQTNLFDISKISDLVCQMEKKWTEWGVWA--CPSNETNLWEHE 117

[Close]

BLAST of Carg11505 vs. Swiss-Prot
Match: sp|P42814|RNS2_ARATH (Ribonuclease 2 OS=Arabidopsis thaliana OX=3702 GN=RNS2 PE=2 SV=1)

HSP 1 Score: 196.8 bits (499), Expect = 1.9e-49
Identity = 93/168 (55.36%), Postives = 108/168 (64.29%), Query Frame = 0


Query: 31  IKEGREQRELDYFKLTLQWPGTVCKGTDSCCSSNACCNRSGAFADFTIHGLWPDYNDGTW 90
           I+  R QRE DYF L+LQWPGT C+GT  CCS NACC  S A   FTIHGLWPDYNDG+W
Sbjct: 23  IELNRSQREFDYFALSLQWPGTYCRGTRHCCSKNACCRGSDAPTQFTIHGLWPDYNDGSW 82

Query: 91  PSCCNGTSFDEKEIHSLLDPLKKYWPSLSCSS-STCHGGKGSFWAHE------------- 150
           PSCC  + F EKEI +L+D L+KYWPSLSC S S+C+GGKGSFW HE             
Sbjct: 83  PSCCYRSDFKEKEISTLMDGLEKYWPSLSCGSPSSCNGGKGSFWGHEWEKHGTCSSPVFH 142

Query: 151 -------------------KVLNDAGYLPSNTEKYPLGGIVSAVENAF 166
                               VL  AGY+ SN+EKYPLGGIV+A++NAF
Sbjct: 143 DEYNYFLTTLNLYLKHNVTDVLYQAGYVASNSEKYPLGGIVTAIQNAF 190

[Close]

BLAST of Carg11505 vs. Swiss-Prot
Match: sp|P42813|RNS1_ARATH (Ribonuclease 1 OS=Arabidopsis thaliana OX=3702 GN=RNS1 PE=1 SV=1)

HSP 1 Score: 90.9 bits (224), Expect = 1.4e-17
Identity = 43/99 (43.43%), Postives = 55/99 (55.56%), Query Frame = 0


Query: 39  ELDYFKLTLQWPGTVCKGTDSCCSSNACCNRSGAFADFTIHGLWPDYNDGTWPSCCNGTS 98
           + D+F    QWPG+ C     CC  N+        ADF IHGLWP+Y DGT+PS C+ + 
Sbjct: 29  DFDFFYFVQQWPGSYCDTQKKCCYPNS----GKPAADFGIHGLWPNYKDGTYPSNCDASK 88

Query: 99  -FDEKEIHSLLDPLKKYWPSLSCSSSTCHGGKGSFWAHE 137
            FD   I  LL  +KK WP+L+C S    G   +FW HE
Sbjct: 89  PFDSSTISDLLTSMKKSWPTLACPS----GSGEAFWEHE 119

[Close]

BLAST of Carg11505 vs. Swiss-Prot
Match: sp|P80022|RNLE_SOLLC (Extracellular ribonuclease LE OS=Solanum lycopersicum OX=4081 PE=1 SV=2)

HSP 1 Score: 89.0 bits (219), Expect = 5.5e-17
Identity = 40/100 (40.00%), Postives = 58/100 (58.00%), Query Frame = 0


Query: 38  RELDYFKLTLQWPGTVCKGTDSCCSSNACCNRSGAFADFTIHGLWPDYNDGTWPSCCNGT 97
           ++ D+F    QWPG+ C    SCC            ADF IHGLWP+ NDGT+PS C+  
Sbjct: 27  KDFDFFYFVQQWPGSYCDTKQSCCYPTT----GKPAADFGIHGLWPNNNDGTYPSNCDPN 86

Query: 98  S-FDEKEIHSLLDPLKKYWPSLSCSSSTCHGGKGSFWAHE 137
           S +D+ +I  L+  +++ WP+L+C S    G   +FW+HE
Sbjct: 87  SPYDQSQISDLISSMQQNWPTLACPS----GSGSTFWSHE 118

[Close]

BLAST of Carg11505 vs. Swiss-Prot
Match: sp|P80196|RNLX_SOLLC (Intracellular ribonuclease LX OS=Solanum lycopersicum OX=4081 GN=RNALX PE=1 SV=2)

HSP 1 Score: 89.0 bits (219), Expect = 5.5e-17
Identity = 52/155 (33.55%), Postives = 70/155 (45.16%), Query Frame = 0


Query: 38  RELDYFKLTLQWPGTVCKGTDSCCSSNACCNRSGAFADFTIHGLWPDYNDGTWP-SCCNG 97
           ++ D+F    QWP + C    SCC             DF+IHGLWP+Y DG WP +C   
Sbjct: 26  QDFDFFYFVQQWPASYCDTRRSCCYPTT----GKPDEDFSIHGLWPNYKDGKWPQNCDRE 85

Query: 98  TSFDEKEIHSLLDPLKKYWPSLSCSSSTCHGGKGSFWAHE-------------------- 157
           +S DE E   L+  ++K WPSL+C SS   G K  FW+HE                    
Sbjct: 86  SSLDESEFSDLISTMEKNWPSLACPSS--DGLK--FWSHEWLKHGTCSALNQHAYFQTAL 145

Query: 158 ---------KVLNDAGYLPSNTEKYPLGGIVSAVE 163
                    + LN+AG  P N + Y +  I  A+E
Sbjct: 146 DFKTKSNLLQNLNNAGIKPRNGDYYGVESIKKAIE 172

[Close]

BLAST of Carg11505 vs. Swiss-Prot
Match: sp|P42815|RNS3_ARATH (Ribonuclease 3 OS=Arabidopsis thaliana OX=3702 GN=RNS3 PE=2 SV=1)

HSP 1 Score: 88.6 bits (218), Expect = 7.1e-17
Identity = 43/100 (43.00%), Postives = 54/100 (54.00%), Query Frame = 0


Query: 38  RELDYFKLTLQWPGTVCKGTDSCCSSNACCNRSGAFADFTIHGLWPDYNDGTWPSCCNGT 97
           ++ D+F   LQWPG  C    SCC            ADF IHGLWP+Y  G WP  CN  
Sbjct: 20  QDFDFFYFVLQWPGAYCDSRHSCCYPQT----GKPAADFGIHGLWPNYKTGGWPQNCNPD 79

Query: 98  S-FDEKEIHSLLDPLKKYWPSLSCSSSTCHGGKGSFWAHE 137
           S FD+  +  L+  L++ WP+LSC S+   G K  FW HE
Sbjct: 80  SRFDDLRVSDLMSDLQREWPTLSCPSN--DGMK--FWTHE 111

[Close]

BLAST of Carg11505 vs. TrEMBL
Match: tr|A0A1S3BHR4|A0A1S3BHR4_CUCME (ribonuclease 2-like OS=Cucumis melo OX=3656 GN=LOC103489711 PE=3 SV=1)

HSP 1 Score: 275.8 bits (704), Expect = 6.4e-71
Identity = 132/197 (67.01%), Postives = 146/197 (74.11%), Query Frame = 0


Query: 2   IPFIFFLQFSLSVASTSLNDSSADAIISQIKEGREQRELDYFKLTLQWPGTVCKGTDSCC 61
           IP IF LQF++ +AS +LN +S  A+I Q K+GREQRE DYFKL LQWPGT+CK T  CC
Sbjct: 7   IPIIFLLQFTIFLASNTLNHASG-AVIFQTKDGREQREFDYFKLALQWPGTICKSTRHCC 66

Query: 62  SSNACCNRSGAFADFTIHGLWPDYNDGTWPSCCNGTSFDEKEIHSLLDPLKKYWPSLSCS 121
           SSNACCNRSGAFADFTIHGLWPDYNDGTWP+CCNG  FDEKEI +LLDPLKKYWPSLSCS
Sbjct: 67  SSNACCNRSGAFADFTIHGLWPDYNDGTWPACCNGKIFDEKEIRTLLDPLKKYWPSLSCS 126

Query: 122 S-STCHGGKGSFWAHE--------------------------------KVLNDAGYLPSN 166
           S STCHG KGSFWAHE                                KVLNDAGY+PSN
Sbjct: 127 SPSTCHGSKGSFWAHEWEKHGTCSYPVARDEYNYFLTTLNVYFKYNVTKVLNDAGYVPSN 186

[Close]

BLAST of Carg11505 vs. TrEMBL
Match: tr|A0A0A0K5E4|A0A0A0K5E4_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G374550 PE=3 SV=1)

HSP 1 Score: 270.8 bits (691), Expect = 2.1e-69
Identity = 130/197 (65.99%), Postives = 143/197 (72.59%), Query Frame = 0


Query: 2   IPFIFFLQFSLSVASTSLNDSSADAIISQIKEGREQRELDYFKLTLQWPGTVCKGTDSCC 61
           IP +F LQF++ ++ST  N +S  AII   K+G+EQRE DYFKL LQWPGTVCKGT  CC
Sbjct: 7   IPILFLLQFTIFISSTPFNHASG-AIIFHTKDGQEQREFDYFKLALQWPGTVCKGTRHCC 66

Query: 62  SSNACCNRSGAFADFTIHGLWPDYNDGTWPSCCNGTSFDEKEIHSLLDPLKKYWPSLSCS 121
           SSN CCNRSGAF DFTIHGLWPDYNDGTWP+CCNG  FDEKEI +LLDPLKKYWPSLSCS
Sbjct: 67  SSNGCCNRSGAFGDFTIHGLWPDYNDGTWPACCNGKIFDEKEILTLLDPLKKYWPSLSCS 126

Query: 122 S-STCHGGKGSFWAHE--------------------------------KVLNDAGYLPSN 166
           S STCHG KGSFWAHE                                KVLNDAGYLPSN
Sbjct: 127 SPSTCHGSKGSFWAHEWEKHGTCSYPVAHDEYNYFLTTLNVYFKYNVTKVLNDAGYLPSN 186

[Close]

BLAST of Carg11505 vs. TrEMBL
Match: tr|A0A2N9FT15|A0A2N9FT15_FAGSY (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS17953 PE=3 SV=1)

HSP 1 Score: 228.4 bits (581), Expect = 1.2e-56
Identity = 100/136 (73.53%), Postives = 113/136 (83.09%), Query Frame = 0


Query: 31  IKEGREQRELDYFKLTLQWPGTVCKGTDSCCSSNACCNRSGAFADFTIHGLWPDYNDGTW 90
           + E   QRE DYF L LQWPGTVC+ T  CCSSNACC RS A  +FTIHGLWPDYNDGTW
Sbjct: 37  VSEDNGQREFDYFALALQWPGTVCQRTRHCCSSNACCRRSNAPTEFTIHGLWPDYNDGTW 96

Query: 91  PSCCNGTSFDEKEIHSLLDPLKKYWPSLSC-SSSTCHGGKGSFWAHEKVLNDAGYLPSNT 150
           P+CC+ ++FDEK+I +L D L+KYWPSLSC SSSTCHG KG FWAHE+VL  AGY+PSNT
Sbjct: 97  PACCSKSNFDEKQISTLHDALEKYWPSLSCGSSSTCHGTKGPFWAHEQVLEAAGYIPSNT 156

Query: 151 EKYPLGGIVSAVENAF 166
           EKYPLGGIVSA+ENAF
Sbjct: 157 EKYPLGGIVSAIENAF 172

[Close]

BLAST of Carg11505 vs. TrEMBL
Match: tr|A0A059AWF1|A0A059AWF1_EUCGR (Uncharacterized protein OS=Eucalyptus grandis OX=71139 GN=EUGRSUZ_H00686 PE=3 SV=1)

HSP 1 Score: 220.7 bits (561), Expect = 2.4e-54
Identity = 103/162 (63.58%), Postives = 116/162 (71.60%), Query Frame = 0


Query: 37  QRELDYFKLTLQWPGTVCKGTDSCCSSNACCNRSGAFADFTIHGLWPDYNDGTWPSCCNG 96
           QRE DYFKLT+QWPGT C+ T  CC+SNACC  S A A+FTIHGLWPDYNDGTWP+CC+ 
Sbjct: 33  QREFDYFKLTVQWPGTFCRRTRHCCASNACCRGSNAPAEFTIHGLWPDYNDGTWPACCSR 92

Query: 97  TSFDEKEIHSLLDPLKKYWPSLSC-SSSTCHGGKGSFWAHE------------------- 156
           + F+EKEI +L+D L+KYWPSLSC SSSTCHGGKGSFWAHE                   
Sbjct: 93  SRFNEKEISTLVDALEKYWPSLSCGSSSTCHGGKGSFWAHEWEKHGTCSFPVLRDEYSYF 152

Query: 157 -------------KVLNDAGYLPSNTEKYPLGGIVSAVENAF 166
                        KVLNDAGYLPSNTEKYPLGGIVSA++NAF
Sbjct: 153 LIALNVYFKYNVTKVLNDAGYLPSNTEKYPLGGIVSAIQNAF 194

[Close]

BLAST of Carg11505 vs. TrEMBL
Match: tr|A0A2C9UVD8|A0A2C9UVD8_MANES (Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_12G057200 PE=3 SV=1)

HSP 1 Score: 220.3 bits (560), Expect = 3.2e-54
Identity = 102/172 (59.30%), Postives = 118/172 (68.60%), Query Frame = 0


Query: 27  IISQIKEGREQRELDYFKLTLQWPGTVCKGTDSCCSSNACCNRSGAFADFTIHGLWPDYN 86
           ++ +++  + QRE DYFKL LQWPGT C+ T  CCSSNACC  S A  +FTIHGLWPDYN
Sbjct: 27  MVEEVRATQGQREFDYFKLALQWPGTYCQSTRQCCSSNACCRGSNAPTEFTIHGLWPDYN 86

Query: 87  DGTWPSCCNGTSFDEKEIHSLLDPLKKYWPSLSC-SSSTCHGGKGSFWAHE--------- 146
           DGTWP+CC  + FDEKEI +LLD L+KYWP+LSC SSSTCHG KGSFWAHE         
Sbjct: 87  DGTWPACCRRSDFDEKEISTLLDGLQKYWPTLSCGSSSTCHGTKGSFWAHEWEKHGTCSS 146

Query: 147 -----------------------KVLNDAGYLPSNTEKYPLGGIVSAVENAF 166
                                  KVLN+AGY+PSNTEKYPLGGIVSA+ENAF
Sbjct: 147 PVVHDEYSYFVTVLNLFFKYNVTKVLNEAGYIPSNTEKYPLGGIVSAIENAF 198

The following BLAST results are available for this feature:

BLAST of Carg11505 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022953173.1	9.6e-95	99.39	ribonuclease 2-like isoform X2 [Cucurbita moschata]	[more]
XP_023547522.1	4.0e-93	97.58	ribonuclease 2-like isoform X2 [Cucurbita pepo subsp. pepo]	[more]
XP_022953172.1	9.3e-90	83.25	ribonuclease 2-like isoform X1 [Cucurbita moschata]	[more]
XP_023547521.1	3.9e-88	81.73	ribonuclease 2-like isoform X1 [Cucurbita pepo subsp. pepo]	[more]
XP_022991824.1	1.4e-85	80.20	ribonuclease 2-like [Cucurbita maxima]	[more]

BLAST of Carg11505 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G39780.1	1.0e-50	55.36	ribonuclease 2	[more]
AT1G14220.1	1.5e-20	44.66	Ribonuclease T2 family protein	[more]
AT2G02990.1	8.0e-19	43.43	ribonuclease 1	[more]
AT1G26820.1	4.0e-18	43.00	ribonuclease 3	[more]
AT1G14210.1	7.7e-14	29.91	Ribonuclease T2 family protein	[more]

BLAST of Carg11505 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|P42814\|RNS2_ARATH	1.9e-49	55.36	Ribonuclease 2 OS=Arabidopsis thaliana OX=3702 GN=RNS2 PE=2 SV=1	[more]
sp\|P42813\|RNS1_ARATH	1.4e-17	43.43	Ribonuclease 1 OS=Arabidopsis thaliana OX=3702 GN=RNS1 PE=1 SV=1	[more]
sp\|P80022\|RNLE_SOLLC	5.5e-17	40.00	Extracellular ribonuclease LE OS=Solanum lycopersicum OX=4081 PE=1 SV=2	[more]
sp\|P80196\|RNLX_SOLLC	5.5e-17	33.55	Intracellular ribonuclease LX OS=Solanum lycopersicum OX=4081 GN=RNALX PE=1 SV=2	[more]
sp\|P42815\|RNS3_ARATH	7.1e-17	43.00	Ribonuclease 3 OS=Arabidopsis thaliana OX=3702 GN=RNS3 PE=2 SV=1	[more]

BLAST of Carg11505 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3BHR4\|A0A1S3BHR4_CUCME	6.4e-71	67.01	ribonuclease 2-like OS=Cucumis melo OX=3656 GN=LOC103489711 PE=3 SV=1	[more]
tr\|A0A0A0K5E4\|A0A0A0K5E4_CUCSA	2.1e-69	65.99	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G374550 PE=3 SV=1	[more]
tr\|A0A2N9FT15\|A0A2N9FT15_FAGSY	1.2e-56	73.53	Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS17953 PE=3 SV=1	[more]
tr\|A0A059AWF1\|A0A059AWF1_EUCGR	2.4e-54	63.58	Uncharacterized protein OS=Eucalyptus grandis OX=71139 GN=EUGRSUZ_H00686 PE=3 SV...	[more]
tr\|A0A2C9UVD8\|A0A2C9UVD8_MANES	3.2e-54	59.30	Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_12G057200 PE=3 SV=...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0003723	RNA binding
GO:0033897	ribonuclease T2 activity

Vocabulary: **INTERPRO**
Term	Definition
IPR018188	RNase_T2_His_AS_1
IPR001568	RNase_T2-like
IPR036430	RNase_T2-like_sf

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0033897	ribonuclease T2 activity
molecular_function	GO:0003723	RNA binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg11505-RA	Carg11505-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR036430	Ribonuclease T2-like superfamily	GENE3D	G3DSA:3.90.730.10		coord: 36..136 e-value: 4.9E-35 score: 123.1
IPR036430	Ribonuclease T2-like superfamily	SUPERFAMILY	SSF55895	Ribonuclease Rh-like	coord: 39..164
IPR001568	Ribonuclease T2-like	PFAM	PF00445	Ribonuclease_T2	coord: 42..136 e-value: 1.5E-22 score: 80.6
IPR001568	Ribonuclease T2-like	PANTHER	PTHR11240	RIBONUCLEASE T2	coord: 13..136
None	No IPR available	PANTHER	PTHR11240:SF37	SUBFAMILY NOT NAMED	coord: 13..136
IPR018188	Ribonuclease T2, His active site 1	PROSITE	PS00530	RNASE_T2_1	coord: 76..83

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg11505	Cla014851	Watermelon (97103) v1	carwmB0014
Carg11505	Csa7G374550	Cucumber (Chinese Long) v2	carcuB0013
Carg11505	MELO3C012716	Melon (DHL92) v3.5.1	carmeB0014
Carg11505	ClCG09G007980	Watermelon (Charleston Gray)	carwcgB0012
Carg11505	CSPI07G15340	Wild cucumber (PI 183967)	carcpiB0013
Carg11505	Cucsa.388260	Cucumber (Gy14) v1	carcgyB0013
Carg11505	CmaCh08G002770	Cucurbita maxima (Rimu)	carcmaB0021
Carg11505	CmaCh17G013260	Cucurbita maxima (Rimu)	carcmaB0020
Carg11505	CmoCh08G002760	Cucurbita moschata (Rifu)	carcmoB0022
Carg11505	CmoCh17G012920	Cucurbita moschata (Rifu)	carcmoB0021
Carg11505	Lsi02G021860	Bottle gourd (USVL1VR-Ls)	carlsiB012
Carg11505	Cp4.1LG12g10460	Cucurbita pepo (Zucchini)	carcpeB0018
Carg11505	Cp4.1LG17g06000	Cucurbita pepo (Zucchini)	carcpeB0023
Carg11505	CsGy7G013810	Cucumber (Gy14) v2	carcgybB0012
Carg11505	MELO3C012716.2	Melon (DHL92) v3.6.1	carmedB0015
Carg11505	CsaV3_7G027100	Cucumber (Chinese Long) v3	carcucB0013
Carg11505	Cla97C09G170600	Watermelon (97103) v2	carwmbB0012
Carg11505	Bhi09G000996	Wax gourd	carwgoB0015

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Carg11505	Carg05103	Silver-seed gourd	carcarB009

The following block(s) are covering this gene:

None