Carg11321 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg11321
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	cx9C motif-containing protein 4
Location	Cucurbita_argyrosperma_scaffold_025 : 253277 .. 255457 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AGAGAGATAGAGAAATGCCTCAACCGAGCAAAGAACCCTGCAAGGAGGAGGCGTGCGACATTCAAGCTTGTTTCTCCAAAGCTATCGTTCTTCCTCACAAGTAAGTTTAGGTTAACATTTTTCTTTGAGTTTGTTTCCCGAGGAATCTGCGACGAAAGAATCTCACGTTTTTAGGCTGTTCGTCGATGTTTGATGTTGTTCGTTTGAGTCATTTGCATGAATCGGAGGATCGAAGGATTGGATTCGAATATCTTTCTTTTTCTTCTCTGTTTTACTGTATCTCTTAACGAAAAATTCTGGAATGCTATGTTATATTCTTTCTGTTTTGTGCTTAGTGTTTTTTCTTTCCTTTGAATTATCCATATCTGCTTTCTCCGAGGGATCAAACAAAACGTGAATCAAGCAAGAAAACAGAAAAGCTTTCCGGTTTGATTCCTCTATTTGGTGCATTTGTGCTGGAAAGTTGTTAAAAATGTATATAATCGATCAACAGAATTCTATTTCGGACAATTAGATTTTAGTTCAAAGTTTTGAACCTTCTAACAGCAAGAAGTGGACCAACAAAAGAAGATGATTTTCTTGGGCATTTTCTAAGAAGGTCCAAATGAGTGATAGTTCTGCTTTAAACTCCTAAAAAGATCAGCAAATAAAGAGACCCGACGGATCCGACTCCCAATCCCTAGTATCCAGCTTCCCTTTGATTGGCCTTAAGTCCCCCCAAGAAGCTTCAATGTTGTCCCGTTTAGCCACCTCTCTGTTTTGTTTGTCACAGCTGCGGCACTCCATTCATCTCTCTTCCCAAATTCCAAGTTCATCCCATTTTCTAGCTGGGGAGAATGGATAAACACGTTGGTTTACACTAGAGGCATATAGCTCTCCTAGTCTCGATCCTATTGCATTACATGGTTTGTAATGATGTTGAAGTTTGATACTTTACCGAAGGAAGGGCCTTAGATCGCAGTTATACATGGGACATTATTGTTCAGCTGTAACTTTTTAGGAAGTAGAAAACCTATTCCTTCCTGAGGCTTTTTCTTTGACCTTTTTTCTTCATTAACGACCTTTGGAAGAGAGCAGGGGTGCTTTTATATCTGAGTTATGCGTAGACAAACATCCTATAATAGTTTAAGCAACCTATTCCTTGGGAGGAATTGGGATATTTTCTTACTTTATGCACTCGTTGCTTCAGGAAATGGCTGCTTGTTTTCATGACTAGTCTGCATTGTGCCAATGCCCGTAGTCCATGTTTCTTAGATCTATGCAAACAAATTTCAGCTTTAGATACTCTTTCATAAAGTGTACTCTTTCGACCATTAGGTTTGTATCCCCACCCCGTGTTGAACTGAATTATTTATATATCAGCTCTTAGATATTCATGAAATTTCTCTCTTTGTTCGTGTGATGGGGAAAGGCCTTTAGATGCAAATAATTCGATATGCTCCTAAACAGTTTGTGCATTGGCATGATTGCAGGTAAGTTGGGGCCATTCAGCTATTGCAGCATTGCTGTGAGAACTGTGATTACAAATCAACTCATTGTGCTTCCATTTCTGACCTCTTAAAAGCAAATGCCAAAAGGTCGAGAAGCCAGAAATCTTGATTCAAAACAAGTCAGATGCAATTTATTCTAAATGACACACCACATTAGGTTTTGCTGTTAACTCGAGGCAACAATGAAATTACCATTACTTTACAAATCCATCACCTAGTAATCCTTTCTAAGAATGTTTTAATTCTTTTTCCCCATGTTAACCCATGATACAGATTAACGACTAATCTTGGCCCTGTTTCAGTTCTACTTTCAATTATTGGAAAGAATCCATTAAACTTGGATGATTGCAACAAAGGAAAGACTTACGTTTTAGATATACCAAAGATTAGAAACAAAGGGAAATTACAATCACCTTGAGCTCTTGAGTTTAGGTTAAACTAGTCATACCCCACTCCTCAAAAGTGCTACCTGCTTGATACAACATCACGAACCCATATTTAAAATGTGAATGAAGAAGAAAACCAAGGCAATTTTCAGAACACTAAGAATGAAAATGGCTGAATAGACGGTCTAAGAACAGCTATATCCGTGCATTTTAGAAAGAGACCGAGCGAGTTCTGATATGTGGGGAGAGGCAATATGTATTACCAATTGATGAAAAAGAATTCTGTTGGCTTGCATCTTTCATAT

mRNA sequence

AGAGAGATAGAGAAATGCCTCAACCGAGCAAAGAACCCTGCAAGGAGGAGGCGTGCGACATTCAAGCTTGTTTCTCCAAAGCTATCGTTCTTCCTCACAAGAAATGGCTGCTTGTTTTCATGACTAGTCTGCATTGTGCCAATGCCCGTAGTCCATGTAAGTTGGGGCCATTCAGCTATTGCAGCATTGCTGTGAGAACTGTGATTACAAATCAACTCATTGTGCTTCCATTTCTGACCTCTTAAAAGCAAATGCCAAAAGGTCGAGAAGCCAGAAATCTTGATTCAAAACAAGTCAGATGCAATTTATTCTAAATGACACACCACATTAGGTTTTGCTGTTAACTCGAGGCAACAATGAAATTACCATTACTTTACAAATCCATCACCTAGTAATCCTTTCTAAGAATGTTTTAATTCTTTTTCCCCATGTTAACCCATGATACAGATTAACGACTAATCTTGGCCCTGTTTCAGTTCTACTTTCAATTATTGGAAAGAATCCATTAAACTTGGATGATTGCAACAAAGGAAAGACTTACGTTTTAGATATACCAAAGATTAGAAACAAAGGGAAATTACAATCACCTTGAGCTCTTGAGTTTAGGTTAAACTAGTCATACCCCACTCCTCAAAAGTGCTACCTGCTTGATACAACATCACGAACCCATATTTAAAATGTGAATGAAGAAGAAAACCAAGGCAATTTTCAGAACACTAAGAATGAAAATGGCTGAATAGACGGTCTAAGAACAGCTATATCCGTGCATTTTAGAAAGAGACCGAGCGAGTTCTGATATGTGGGGAGAGGCAATATGTATTACCAATTGATGAAAAAGAATTCTGTTGGCTTGCATCTTTCATAT

Coding sequence (CDS)

ATGCCTCAACCGAGCAAAGAACCCTGCAAGGAGGAGGCGTGCGACATTCAAGCTTGTTTCTCCAAAGCTATCGTTCTTCCTCACAAGAAATGGCTGCTTGTTTTCATGACTAGTCTGCATTGTGCCAATGCCCGTAGTCCATGTAAGTTGGGGCCATTCAGCTATTGCAGCATTGCTGTGAGAACTGTGATTACAAATCAACTCATTGTGCTTCCATTTCTGACCTCTTAA

Protein sequence

MPQPSKEPCKEEACDIQACFSKAIVLPHKKWLLVFMTSLHCANARSPCKLGPFSYCSIAVRTVITNQLIVLPFLTS

Homology

[Close]

BLAST of Carg11321 vs. NCBI nr
Match: XP_022136460.1 (cx9C motif-containing protein 4 [Momordica charantia])

HSP 1 Score: 57.0 bits (136), Expect = 3.2e-05
Identity = 26/43 (60.47%), Postives = 30/43 (69.77%), Query Frame = 0


Query: 1  MPQPSKEPCKEEACDIQACFSKAIVLPHKKWLLVFMTSLHCAN 44
          MPQPSKEPCK+EACDIQAC SK   LPHK   ++ +    C N
Sbjct: 1  MPQPSKEPCKKEACDIQACLSKNNFLPHKCVKVIQLLQYCCEN 43

[Close]

BLAST of Carg11321 vs. NCBI nr
Match: XP_022942264.1 (cx9C motif-containing protein 4 [Cucurbita moschata])

HSP 1 Score: 57.0 bits (136), Expect = 3.2e-05
Identity = 26/43 (60.47%), Postives = 30/43 (69.77%), Query Frame = 0


Query: 1  MPQPSKEPCKEEACDIQACFSKAIVLPHKKWLLVFMTSLHCAN 44
          MPQPSKEPCK+EACDIQAC SK   LPHK   ++ +    C N
Sbjct: 1  MPQPSKEPCKKEACDIQACLSKNNFLPHKCVRVIQLLQYCCEN 43

[Close]

BLAST of Carg11321 vs. NCBI nr
Match: XP_022983557.1 (cx9C motif-containing protein 4, mitochondrial [Cucurbita maxima])

HSP 1 Score: 57.0 bits (136), Expect = 3.2e-05
Identity = 26/43 (60.47%), Postives = 30/43 (69.77%), Query Frame = 0


Query: 1  MPQPSKEPCKEEACDIQACFSKAIVLPHKKWLLVFMTSLHCAN 44
          MPQPSKEPCK+EACDIQAC SK   LPHK   ++ +    C N
Sbjct: 15 MPQPSKEPCKKEACDIQACLSKNNFLPHKCVRVIQLLQYCCEN 57

[Close]

BLAST of Carg11321 vs. NCBI nr
Match: XP_023539532.1 (cx9C motif-containing protein 4, mitochondrial [Cucurbita pepo subsp. pepo])

HSP 1 Score: 57.0 bits (136), Expect = 3.2e-05
Identity = 26/43 (60.47%), Postives = 30/43 (69.77%), Query Frame = 0


Query: 1  MPQPSKEPCKEEACDIQACFSKAIVLPHKKWLLVFMTSLHCAN 44
          MPQPSKEPCK+EACDIQAC SK   LPHK   ++ +    C N
Sbjct: 13 MPQPSKEPCKKEACDIQACLSKNNFLPHKCVRVIQLLQYCCEN 55

[Close]

BLAST of Carg11321 vs. NCBI nr
Match: XP_008456041.1 (PREDICTED: cx9C motif-containing protein 4 [Cucumis melo])

HSP 1 Score: 56.6 bits (135), Expect = 4.2e-05
Identity = 26/41 (63.41%), Postives = 30/41 (73.17%), Query Frame = 0


Query: 1  MPQPSKEPCKEEACDIQACFSKAIVLPHKKWLLVFMTSLHC 42
          MPQPSKEPCK+EACDIQAC SK   LPHK   ++ +  L C
Sbjct: 1  MPQPSKEPCKKEACDIQACLSKNNFLPHKCVRVIQLLQLCC 41

[Close]

BLAST of Carg11321 vs. TAIR10
Match: AT1G09794.1 (Cox19 family protein (CHCH motif))

HSP 1 Score: 48.9 bits (115), Expect = 1.6e-06
Identity = 23/41 (56.10%), Postives = 27/41 (65.85%), Query Frame = 0


Query: 1  MPQPSKEPCKEEACDIQACFSKAIVLPHKKWLLVFMTSLHC 42
          M QPSKEPCK+EACDIQAC SK   LP +   ++ M    C
Sbjct: 1  MAQPSKEPCKKEACDIQACLSKNNFLPQRCQRVIEMLQACC 41

[Close]

BLAST of Carg11321 vs. TrEMBL
Match: tr|A0A1S3C3J8|A0A1S3C3J8_CUCME (cx9C motif-containing protein 4 OS=Cucumis melo OX=3656 GN=LOC103496091 PE=4 SV=1)

HSP 1 Score: 56.6 bits (135), Expect = 2.8e-05
Identity = 26/41 (63.41%), Postives = 30/41 (73.17%), Query Frame = 0


Query: 1  MPQPSKEPCKEEACDIQACFSKAIVLPHKKWLLVFMTSLHC 42
          MPQPSKEPCK+EACDIQAC SK   LPHK   ++ +  L C
Sbjct: 1  MPQPSKEPCKKEACDIQACLSKNNFLPHKCVRVIQLLQLCC 41

The following BLAST results are available for this feature:

BLAST of Carg11321 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022136460.1	3.2e-05	60.47	cx9C motif-containing protein 4 [Momordica charantia]	[more]
XP_022942264.1	3.2e-05	60.47	cx9C motif-containing protein 4 [Cucurbita moschata]	[more]
XP_022983557.1	3.2e-05	60.47	cx9C motif-containing protein 4, mitochondrial [Cucurbita maxima]	[more]
XP_023539532.1	3.2e-05	60.47	cx9C motif-containing protein 4, mitochondrial [Cucurbita pepo subsp. pepo]	[more]
XP_008456041.1	4.2e-05	63.41	PREDICTED: cx9C motif-containing protein 4 [Cucumis melo]	[more]

BLAST of Carg11321 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G09794.1	1.6e-06	56.10	Cox19 family protein (CHCH motif)	[more]

BLAST of Carg11321 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Carg11321 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3C3J8\|A0A1S3C3J8_CUCME	2.8e-05	63.41	cx9C motif-containing protein 4 OS=Cucumis melo OX=3656 GN=LOC103496091 PE=4 SV=...	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg11321-RA	Carg11321-RA	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg11321	CmaCh04G005440	Cucurbita maxima (Rimu)	carcmaB0925
Carg11321	CmoCh04G005780	Cucurbita moschata (Rifu)	carcmoB0899
Carg11321	Cp4.1LG01g01720	Cucurbita pepo (Zucchini)	carcpeB0927
Carg11321	MELO3C031671.2	Melon (DHL92) v3.6.1	carmedB0661

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Carg11321	Carg13196	Silver-seed gourd	carcarB051

The following block(s) are covering this gene:


Gene	Organism	Block
Carg11321	Watermelon (97103) v2	carwmbB0681
Carg11321	Wax gourd	carwgoB0771
Carg11321	Cucumber (Gy14) v2	carcgybB0650
Carg11321	Cucumber (Gy14) v1	carcgyB0730
Carg11321	Cucurbita maxima (Rimu)	carcmaB0924
Carg11321	Cucurbita moschata (Rifu)	carcmoB0898
Carg11321	Cucurbita pepo (Zucchini)	carcpeB0926
Carg11321	Wild cucumber (PI 183967)	carcpiB0685
Carg11321	Cucumber (Chinese Long) v2	carcuB0675
Carg11321	Cucumber (Chinese Long) v3	carcucB0687
Carg11321	Bottle gourd (USVL1VR-Ls)	carlsiB595
Carg11321	Melon (DHL92) v3.5.1	carmeB0651
Carg11321	Watermelon (Charleston Gray)	carwcgB0636
Carg11321	Watermelon (97103) v1	carwmB0655