Carg11272 (gene) Silver-seed gourd

Overview
NameCarg11272
Typegene
OrganismCucurbita argyrosperma (Silver-seed gourd)
DescriptionDNA helicase
LocationCucurbita_argyrosperma_scaffold_013 : 1172187 .. 1172841 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCTAAATTGTGGAAGCTTTGGTATCTTGCAGAGCTTCAGAAAGTACATGACTTTCAAGAAGGATTACAATGAGCTGCTTCTATATCTTCTCCGAGAGCTTGTGAAGAATGCACTTCACTTTGAGGAAATTATTCGCGGATCTACATCGGAGCTTACCCACATTAATGTGAAATTGGAAGACCTACAAAGCAAGGTAATGATATCGTGTTACTTTCCTATATATAAGGTAGATAAATACGGGACTTACATATATGATACCGATGCAGGCACAGGAACACGAAATTTATGATCTGAAACCCTTCTTCACCAGCTCTCATTTTTCAAATGCTAAGTTTGTGCTGGATGAAGAGCATGGTCTAATCAGGCATCATCTTGCCAGGTGATTTAAAGATAAAGATTGAAAATGGAATAGGAATAGGAAATAGGAAATAGGAAATAGGTGAGTTATCTTACCGAATTGATGATATTCGTAAAGGACTCGAAAGTTGTGAGTAGGAAGTTGTGTTAAATGGGGATTCAAAAGACCTCTTTGGATATTTAGAGATGTACTGTTTTGAGATCTGAATTTAATCAAATTAAGAACGAGTTGAAGAATTCTCTTTAGCATGATCTTATGCAATCTCTTCTTTTACGATTACTTCAGGCAGTCCTGA

mRNA sequence

ATGCTAAATTGTGGAAGCTTTGGTATCTTGCAGAGCTTCAGAAAGTACATGACTTTCAAGAAGGATTACAATGAGCTGCTTCTATATCTTCTCCGAGAGCTTGTGAAGAATGCACTTCACTTTGAGGAAATTATTCGCGGATCTACATCGGAGCTTACCCACATTAATGTGAAATTGGAAGACCTACAAAGCAAGGCACAGGAACACGAAATTTATGATCTGAAACCCTTCTTCACCAGCTCTCATTTTTCAAATGCTAAGTTTGTGCTGGATGAAGAGCATGGTCTAATCAGGCATCATCTTGCCAGGCAGTCCTGA

Coding sequence (CDS)

ATGCTAAATTGTGGAAGCTTTGGTATCTTGCAGAGCTTCAGAAAGTACATGACTTTCAAGAAGGATTACAATGAGCTGCTTCTATATCTTCTCCGAGAGCTTGTGAAGAATGCACTTCACTTTGAGGAAATTATTCGCGGATCTACATCGGAGCTTACCCACATTAATGTGAAATTGGAAGACCTACAAAGCAAGGCACAGGAACACGAAATTTATGATCTGAAACCCTTCTTCACCAGCTCTCATTTTTCAAATGCTAAGTTTGTGCTGGATGAAGAGCATGGTCTAATCAGGCATCATCTTGCCAGGCAGTCCTGA

Protein sequence

MLNCGSFGILQSFRKYMTFKKDYNELLLYLLRELVKNALHFEEIIRGSTSELTHINVKLEDLQSKAQEHEIYDLKPFFTSSHFSNAKFVLDEEHGLIRHHLARQS
Homology
[Close]
BLAST of Carg11272 vs. NCBI nr
Match: XP_022935022.1 (DNA replication licensing factor MCM2-like isoform X1 [Cucurbita moschata])

HSP 1 Score: 188.7 bits (478), Expect = 9.9e-45
Identity = 93/95 (97.89%), Postives = 95/95 (100.00%), Query Frame = 0 

Query: 11  QSFRKYMTFKKDYNELLLYLLRELVKNALHFEEIIRGSTSELTHINVKLEDLQSKAQEHE 70
           +SFRKYMTFKKDYNELLLYLLRELVKNALHFEEI+RGSTSELTHINVKLEDLQSKAQEHE
Sbjct: 852 KSFRKYMTFKKDYNELLLYLLRELVKNALHFEEIVRGSTSELTHINVKLEDLQSKAQEHE 911

Query: 71  IYDLKPFFTSSHFSNAKFVLDEEHGLIRHHLARQS 106
           IYDLKPFFTSSHFSNAKFVLDEEHGLIRHHLARQS
Sbjct: 912 IYDLKPFFTSSHFSNAKFVLDEEHGLIRHHLARQS 946

[Close]
BLAST of Carg11272 vs. NCBI nr
Match: XP_022982775.1 (DNA replication licensing factor MCM2-like isoform X1 [Cucurbita maxima])

HSP 1 Score: 188.7 bits (478), Expect = 9.9e-45
Identity = 93/95 (97.89%), Postives = 95/95 (100.00%), Query Frame = 0 

Query: 11  QSFRKYMTFKKDYNELLLYLLRELVKNALHFEEIIRGSTSELTHINVKLEDLQSKAQEHE 70
           +SFRKYMTFKKDYNELLLYLLRELVKNALHFEEI+RGSTSELTHINVKLEDLQSKAQEHE
Sbjct: 852 KSFRKYMTFKKDYNELLLYLLRELVKNALHFEEIVRGSTSELTHINVKLEDLQSKAQEHE 911

Query: 71  IYDLKPFFTSSHFSNAKFVLDEEHGLIRHHLARQS 106
           IYDLKPFFTSSHFSNAKFVLDEEHGLIRHHLARQS
Sbjct: 912 IYDLKPFFTSSHFSNAKFVLDEEHGLIRHHLARQS 946

[Close]
BLAST of Carg11272 vs. NCBI nr
Match: XP_023528435.1 (DNA replication licensing factor MCM2-like isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 186.4 bits (472), Expect = 4.9e-44
Identity = 92/95 (96.84%), Postives = 94/95 (98.95%), Query Frame = 0 

Query: 11  QSFRKYMTFKKDYNELLLYLLRELVKNALHFEEIIRGSTSELTHINVKLEDLQSKAQEHE 70
           +SFRKYMTFKKDYNELLLYLLRELVKNALHFEEI+RGSTSEL HINVKLEDLQSKAQEHE
Sbjct: 852 KSFRKYMTFKKDYNELLLYLLRELVKNALHFEEIVRGSTSELIHINVKLEDLQSKAQEHE 911

Query: 71  IYDLKPFFTSSHFSNAKFVLDEEHGLIRHHLARQS 106
           IYDLKPFFTSSHFSNAKFVLDEEHGLIRHHLARQS
Sbjct: 912 IYDLKPFFTSSHFSNAKFVLDEEHGLIRHHLARQS 946

[Close]
BLAST of Carg11272 vs. NCBI nr
Match: XP_022935023.1 (DNA replication licensing factor MCM2-like isoform X2 [Cucurbita moschata])

HSP 1 Score: 185.3 bits (469), Expect = 1.1e-43
Identity = 91/93 (97.85%), Postives = 93/93 (100.00%), Query Frame = 0 

Query: 11  QSFRKYMTFKKDYNELLLYLLRELVKNALHFEEIIRGSTSELTHINVKLEDLQSKAQEHE 70
           +SFRKYMTFKKDYNELLLYLLRELVKNALHFEEI+RGSTSELTHINVKLEDLQSKAQEHE
Sbjct: 852 KSFRKYMTFKKDYNELLLYLLRELVKNALHFEEIVRGSTSELTHINVKLEDLQSKAQEHE 911

Query: 71  IYDLKPFFTSSHFSNAKFVLDEEHGLIRHHLAR 104
           IYDLKPFFTSSHFSNAKFVLDEEHGLIRHHLAR
Sbjct: 912 IYDLKPFFTSSHFSNAKFVLDEEHGLIRHHLAR 944

[Close]
BLAST of Carg11272 vs. NCBI nr
Match: XP_022982776.1 (DNA replication licensing factor MCM2-like isoform X2 [Cucurbita maxima])

HSP 1 Score: 185.3 bits (469), Expect = 1.1e-43
Identity = 91/93 (97.85%), Postives = 93/93 (100.00%), Query Frame = 0 

Query: 11  QSFRKYMTFKKDYNELLLYLLRELVKNALHFEEIIRGSTSELTHINVKLEDLQSKAQEHE 70
           +SFRKYMTFKKDYNELLLYLLRELVKNALHFEEI+RGSTSELTHINVKLEDLQSKAQEHE
Sbjct: 852 KSFRKYMTFKKDYNELLLYLLRELVKNALHFEEIVRGSTSELTHINVKLEDLQSKAQEHE 911

Query: 71  IYDLKPFFTSSHFSNAKFVLDEEHGLIRHHLAR 104
           IYDLKPFFTSSHFSNAKFVLDEEHGLIRHHLAR
Sbjct: 912 IYDLKPFFTSSHFSNAKFVLDEEHGLIRHHLAR 944

[Close]
BLAST of Carg11272 vs. TAIR10
Match: AT1G44900.1 (minichromosome maintenance (MCM2/3/5) family protein)

HSP 1 Score: 108.2 bits (269), Expect = 3.1e-24
Identity = 53/88 (60.23%), Postives = 71/88 (80.68%), Query Frame = 0 

Query: 11  QSFRKYMTFKKDYNELLLYLLRELVKNALHFEEIIRGSTSELTHINVKLEDLQSKAQEHE 70
           +SF++Y+T+KKD+N LLL LL+ELVKNAL FEEII GS S L  I VK+E+LQ+KA+E++
Sbjct: 841 ESFKRYITYKKDFNSLLLVLLKELVKNALKFEEIISGSNSGLPTIEVKIEELQTKAKEYD 900

Query: 71  IYDLKPFFTSSHFSNAKFVLDEEHGLIR 99
           I DL+PFF+S+ FS A F LD   G+I+
Sbjct: 901 IADLRPFFSSTDFSKAHFELDHGRGMIK 928

[Close]
BLAST of Carg11272 vs. Swiss-Prot
Match: sp|B8BKI8|MCM2_ORYSI (DNA replication licensing factor MCM2 OS=Oryza sativa subsp. indica OX=39946 GN=OsI_36121 PE=3 SV=1)

HSP 1 Score: 134.0 bits (336), Expect = 9.4e-31
Identity = 64/92 (69.57%), Postives = 79/92 (85.87%), Query Frame = 0 

Query: 11  QSFRKYMTFKKDYNELLLYLLRELVKNALHFEEIIRGSTSELTHINVKLEDLQSKAQEHE 70
           ++FRKYMT+KKDYNELLL LLR LVK+ LHFEEI+ G T+ LTHI VK+EDL++KAQE+E
Sbjct: 869 KNFRKYMTYKKDYNELLLLLLRTLVKDVLHFEEIVSGPTTRLTHIEVKVEDLKNKAQEYE 928

Query: 71  IYDLKPFFTSSHFSNAKFVLDEEHGLIRHHLA 103
           IYDL+PFF+S+HF +  FVLDE  G+IRH LA
Sbjct: 929 IYDLRPFFSSAHFRDNNFVLDEGRGIIRHPLA 960

[Close]
BLAST of Carg11272 vs. Swiss-Prot
Match: sp|Q2R482|MCM2_ORYSJ (DNA replication licensing factor MCM2 OS=Oryza sativa subsp. japonica OX=39947 GN=MCM2 PE=2 SV=1)

HSP 1 Score: 134.0 bits (336), Expect = 9.4e-31
Identity = 64/92 (69.57%), Postives = 79/92 (85.87%), Query Frame = 0 

Query: 11  QSFRKYMTFKKDYNELLLYLLRELVKNALHFEEIIRGSTSELTHINVKLEDLQSKAQEHE 70
           ++FRKYMT+KKDYNELLL LLR LVK+ LHFEEI+ G T+ LTHI VK+EDL++KAQE+E
Sbjct: 869 KNFRKYMTYKKDYNELLLLLLRTLVKDVLHFEEIVSGPTTRLTHIEVKVEDLKNKAQEYE 928

Query: 71  IYDLKPFFTSSHFSNAKFVLDEEHGLIRHHLA 103
           IYDL+PFF+S+HF +  FVLDE  G+IRH LA
Sbjct: 929 IYDLRPFFSSAHFRDNNFVLDEGRGIIRHPLA 960

[Close]
BLAST of Carg11272 vs. Swiss-Prot
Match: sp|Q9LPD9|MCM2_ARATH (DNA replication licensing factor MCM2 OS=Arabidopsis thaliana OX=3702 GN=MCM2 PE=1 SV=1)

HSP 1 Score: 108.2 bits (269), Expect = 5.5e-23
Identity = 53/88 (60.23%), Postives = 71/88 (80.68%), Query Frame = 0 

Query: 11  QSFRKYMTFKKDYNELLLYLLRELVKNALHFEEIIRGSTSELTHINVKLEDLQSKAQEHE 70
           +SF++Y+T+KKD+N LLL LL+ELVKNAL FEEII GS S L  I VK+E+LQ+KA+E++
Sbjct: 841 ESFKRYITYKKDFNSLLLVLLKELVKNALKFEEIISGSNSGLPTIEVKIEELQTKAKEYD 900

Query: 71  IYDLKPFFTSSHFSNAKFVLDEEHGLIR 99
           I DL+PFF+S+ FS A F LD   G+I+
Sbjct: 901 IADLRPFFSSTDFSKAHFELDHGRGMIK 928

[Close]
BLAST of Carg11272 vs. Swiss-Prot
Match: sp|P49735|MCM2_DROME (DNA replication licensing factor Mcm2 OS=Drosophila melanogaster OX=7227 GN=Mcm2 PE=1 SV=1)

HSP 1 Score: 55.1 bits (131), Expect = 5.6e-07
Identity = 29/86 (33.72%), Postives = 52/86 (60.47%), Query Frame = 0 

Query: 12  SFRKYMTFKKDYNELLLYLLRELVKNALHFEEIIRGSTSELTHINVKLEDLQSKAQEHEI 71
           +F+KY++F+KD++ELL ++LR+L  + L +     G  +  TH+ +   DL  +A++ +I
Sbjct: 794 TFQKYLSFQKDHSELLFFILRQLTLDQLAYIRCKDGPGA--THVEIMERDLIERAKQLDI 853

Query: 72  YDLKPFFTSSHFSNAKFVLDEEHGLI 98
            +LKPF+ S  F    F  D +  +I
Sbjct: 854 VNLKPFYESDLFRTNGFSYDPKRRII 877

[Close]
BLAST of Carg11272 vs. Swiss-Prot
Match: sp|P55861|MCM2_XENLA (DNA replication licensing factor mcm2 OS=Xenopus laevis OX=8355 GN=mcm2 PE=1 SV=2)

HSP 1 Score: 50.8 bits (120), Expect = 1.0e-05
Identity = 31/95 (32.63%), Postives = 54/95 (56.84%), Query Frame = 0 

Query: 7   FGILQSFRK----YMTFKKDYNELLLYLLRELVKNALHFEEIIRGSTSELTHINVKLEDL 66
           F +++S RK    Y+ F++D NELLL++L++L+   + ++    G+  +   I V  +DL
Sbjct: 790 FSVMRSMRKTFARYLAFRRDNNELLLFVLKQLIAEQVTYQRNRYGAQQDT--IEVPEKDL 849

Query: 67  QSKAQEHEIYDLKPFFTSSHFSNAKFVLDEEHGLI 98
             KA++  I++L  F+ S  F   KF  D +  LI
Sbjct: 850 VDKARQINIHNLSAFYDSDLFKMNKFTHDVKKKLI 882

[Close]
BLAST of Carg11272 vs. TrEMBL
Match: tr|A0A0A0LCK0|A0A0A0LCK0_CUCSA (DNA helicase OS=Cucumis sativus OX=3659 GN=Csa_3G722880 PE=3 SV=1)

HSP 1 Score: 174.9 bits (442), Expect = 9.7e-41
Identity = 86/93 (92.47%), Postives = 90/93 (96.77%), Query Frame = 0 

Query: 11  QSFRKYMTFKKDYNELLLYLLRELVKNALHFEEIIRGSTSELTHINVKLEDLQSKAQEHE 70
           +SFRKYMTFKKDYNELLLYLLRELVKNA+HFEEI+RGSTSELT INVKLEDLQSKAQEHE
Sbjct: 827 KSFRKYMTFKKDYNELLLYLLRELVKNAIHFEEIVRGSTSELTQINVKLEDLQSKAQEHE 886

Query: 71  IYDLKPFFTSSHFSNAKFVLDEEHGLIRHHLAR 104
           IYDLKPFF SSHFSNA FVLDEEHGLIRH+LAR
Sbjct: 887 IYDLKPFFNSSHFSNANFVLDEEHGLIRHNLAR 919

[Close]
BLAST of Carg11272 vs. TrEMBL
Match: tr|A0A1S3CNN0|A0A1S3CNN0_CUCME (DNA helicase OS=Cucumis melo OX=3656 GN=LOC103502828 PE=3 SV=1)

HSP 1 Score: 174.5 bits (441), Expect = 1.3e-40
Identity = 86/93 (92.47%), Postives = 90/93 (96.77%), Query Frame = 0 

Query: 11  QSFRKYMTFKKDYNELLLYLLRELVKNALHFEEIIRGSTSELTHINVKLEDLQSKAQEHE 70
           +SFRKYMTFKKDYNELLLYLLRELVKNALHFEEI+RGSTSELT INVKLEDLQSKAQEHE
Sbjct: 852 KSFRKYMTFKKDYNELLLYLLRELVKNALHFEEIVRGSTSELTQINVKLEDLQSKAQEHE 911

Query: 71  IYDLKPFFTSSHFSNAKFVLDEEHGLIRHHLAR 104
           IYDLKPFF S+HFSNA FVLDEEHGLIRH+LAR
Sbjct: 912 IYDLKPFFNSTHFSNANFVLDEEHGLIRHNLAR 944

[Close]
BLAST of Carg11272 vs. TrEMBL
Match: tr|W9S3E5|W9S3E5_9ROSA (DNA helicase OS=Morus notabilis OX=981085 GN=L484_007789 PE=3 SV=1)

HSP 1 Score: 159.1 bits (401), Expect = 5.5e-36
Identity = 77/93 (82.80%), Postives = 86/93 (92.47%), Query Frame = 0 

Query: 11  QSFRKYMTFKKDYNELLLYLLRELVKNALHFEEIIRGSTSELTHINVKLEDLQSKAQEHE 70
           +SFRKYMTFKKDYNELLLYLLRELVKNALHFEEI+ GSTS LTHI+VK+EDL++KAQEHE
Sbjct: 851 KSFRKYMTFKKDYNELLLYLLRELVKNALHFEEIVSGSTSGLTHIDVKVEDLRNKAQEHE 910

Query: 71  IYDLKPFFTSSHFSNAKFVLDEEHGLIRHHLAR 104
           IYDLKPFFTS+HFS A FVLDE+ G+IRH L R
Sbjct: 911 IYDLKPFFTSTHFSRANFVLDEQRGVIRHRLVR 943

[Close]
BLAST of Carg11272 vs. TrEMBL
Match: tr|A0A2P4IF61|A0A2P4IF61_QUESU (DNA helicase OS=Quercus suber OX=58331 GN=CFP56_60167 PE=3 SV=1)

HSP 1 Score: 158.7 bits (400), Expect = 7.2e-36
Identity = 79/93 (84.95%), Postives = 85/93 (91.40%), Query Frame = 0 

Query: 11  QSFRKYMTFKKDYNELLLYLLRELVKNALHFEEIIRGSTSELTHINVKLEDLQSKAQEHE 70
           +SFRKYMTFKKDYNELLLYLLRELVKNALHFEEI+ GSTS LT I+VK+EDL SKAQEHE
Sbjct: 855 KSFRKYMTFKKDYNELLLYLLRELVKNALHFEEIVSGSTSRLTQIDVKVEDLLSKAQEHE 914

Query: 71  IYDLKPFFTSSHFSNAKFVLDEEHGLIRHHLAR 104
           IYDLKPFFTS HFS+A FVLDEE G+IRH LAR
Sbjct: 915 IYDLKPFFTSPHFSSADFVLDEERGVIRHRLAR 947

[Close]
BLAST of Carg11272 vs. TrEMBL
Match: tr|A0A2N9FV94|A0A2N9FV94_FAGSY (DNA helicase OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS18967 PE=3 SV=1)

HSP 1 Score: 158.3 bits (399), Expect = 9.4e-36
Identity = 79/98 (80.61%), Postives = 86/98 (87.76%), Query Frame = 0 

Query: 6   SFGILQSFRKYMTFKKDYNELLLYLLRELVKNALHFEEIIRGSTSELTHINVKLEDLQSK 65
           S  + +SFRKYMTFKKDYNELLLYLLRELVKNALHFEEI+ GSTS LT I+VK+EDLQ+K
Sbjct: 879 SITVNKSFRKYMTFKKDYNELLLYLLRELVKNALHFEEIVTGSTSRLTQIDVKVEDLQNK 938

Query: 66  AQEHEIYDLKPFFTSSHFSNAKFVLDEEHGLIRHHLAR 104
           AQEHEIYDLKPFFTS HFS A FVLDEE G+I H LAR
Sbjct: 939 AQEHEIYDLKPFFTSPHFSRAHFVLDEERGVITHRLAR 976

The following BLAST results are available for this feature:
BLAST of Carg11272 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022935022.19.9e-4597.89DNA replication licensing factor MCM2-like isoform X1 [Cucurbita moschata][more]
XP_022982775.19.9e-4597.89DNA replication licensing factor MCM2-like isoform X1 [Cucurbita maxima][more]
XP_023528435.14.9e-4496.84DNA replication licensing factor MCM2-like isoform X1 [Cucurbita pepo subsp. pep... [more]
XP_022935023.11.1e-4397.85DNA replication licensing factor MCM2-like isoform X2 [Cucurbita moschata][more]
XP_022982776.11.1e-4397.85DNA replication licensing factor MCM2-like isoform X2 [Cucurbita maxima][more]
BLAST of Carg11272 vs. TAIR10
Match NameE-valueIdentityDescription
AT1G44900.13.1e-2460.23minichromosome maintenance (MCM2/3/5) family protein[more]
BLAST of Carg11272 vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|B8BKI8|MCM2_ORYSI9.4e-3169.57DNA replication licensing factor MCM2 OS=Oryza sativa subsp. indica OX=39946 GN=... [more]
sp|Q2R482|MCM2_ORYSJ9.4e-3169.57DNA replication licensing factor MCM2 OS=Oryza sativa subsp. japonica OX=39947 G... [more]
sp|Q9LPD9|MCM2_ARATH5.5e-2360.23DNA replication licensing factor MCM2 OS=Arabidopsis thaliana OX=3702 GN=MCM2 PE... [more]
sp|P49735|MCM2_DROME5.6e-0733.72DNA replication licensing factor Mcm2 OS=Drosophila melanogaster OX=7227 GN=Mcm2... [more]
sp|P55861|MCM2_XENLA1.0e-0532.63DNA replication licensing factor mcm2 OS=Xenopus laevis OX=8355 GN=mcm2 PE=1 SV=... [more]
BLAST of Carg11272 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0LCK0|A0A0A0LCK0_CUCSA9.7e-4192.47DNA helicase OS=Cucumis sativus OX=3659 GN=Csa_3G722880 PE=3 SV=1[more]
tr|A0A1S3CNN0|A0A1S3CNN0_CUCME1.3e-4092.47DNA helicase OS=Cucumis melo OX=3656 GN=LOC103502828 PE=3 SV=1[more]
tr|W9S3E5|W9S3E5_9ROSA5.5e-3682.80DNA helicase OS=Morus notabilis OX=981085 GN=L484_007789 PE=3 SV=1[more]
tr|A0A2P4IF61|A0A2P4IF61_QUESU7.2e-3684.95DNA helicase OS=Quercus suber OX=58331 GN=CFP56_60167 PE=3 SV=1[more]
tr|A0A2N9FV94|A0A2N9FV94_FAGSY9.4e-3680.61DNA helicase OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS18967 PE=3 SV=1[more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0042555MCM complex
GO:0005634nucleus
Vocabulary: Biological Process
TermDefinition
GO:0006270DNA replication initiation
Vocabulary: Molecular Function
TermDefinition
GO:0005524ATP binding
GO:0003677DNA binding
Vocabulary: INTERPRO
TermDefinition
IPR031327MCM
IPR008045MCM2
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006270 DNA replication initiation
biological_process GO:0008150 biological_process
cellular_component GO:0042555 MCM complex
cellular_component GO:0005634 nucleus
cellular_component GO:0005575 cellular_component
molecular_function GO:0005524 ATP binding
molecular_function GO:0003677 DNA binding
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg11272-RACarg11272-RAmRNA


InterPro
Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR008045DNA replication licensing factor Mcm2PANTHERPTHR11630:SF44DNA REPLICATION LICENSING FACTOR MCM2coord: 11..95
IPR031327Mini-chromosome maintenance proteinPANTHERPTHR11630DNA REPLICATION LICENSING FACTORcoord: 11..95

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
Carg11272Carg23319Silver-seed gourdcarcarB314
The following block(s) are covering this gene:
GeneOrganismBlock
Carg11272Cucurbita maxima (Rimu)carcmaB1132
Carg11272Cucurbita maxima (Rimu)carcmaB1135
Carg11272Cucurbita moschata (Rifu)carcmoB1102
Carg11272Cucurbita moschata (Rifu)carcmoB1106
Carg11272Cucurbita pepo (Zucchini)carcpeB1142
Carg11272Cucurbita pepo (Zucchini)carcpeB1147
Carg11272Cucurbita pepo (Zucchini)carcpeB1148
Carg11272Bottle gourd (USVL1VR-Ls)carlsiB748
Carg11272Melon (DHL92) v3.5.1carmeB0811
Carg11272Melon (DHL92) v3.6.1carmedB0822
Carg11272Watermelon (Charleston Gray)carwcgB0792
Carg11272Watermelon (97103) v1carwmB0816
Carg11272Watermelon (97103) v2carwmbB0851
Carg11272Wax gourdcarwgoB0951