Carg11272-RA (mRNA) Silver-seed gourd
The following sequences are available for this feature:
Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below.ATGCTAAATTGTGGAAGCTTTGGTATCTTGCAGAGCTTCAGAAAGTACATGACTTTCAAGAAGGATTACAATGAGCTGCTTCTATATCTTCTCCGAGAGCTTGTGAAGAATGCACTTCACTTTGAGGAAATTATTCGCGGATCTACATCGGAGCTTACCCACATTAATGTGAAATTGGAAGACCTACAAAGCAAGGTAATGATATCGTGTTACTTTCCTATATATAAGGTAGATAAATACGGGACTTACATATATGATACCGATGCAGGCACAGGAACACGAAATTTATGATCTGAAACCCTTCTTCACCAGCTCTCATTTTTCAAATGCTAAGTTTGTGCTGGATGAAGAGCATGGTCTAATCAGGCATCATCTTGCCAGGTGATTTAAAGATAAAGATTGAAAATGGAATAGGAATAGGAAATAGGAAATAGGAAATAGGTGAGTTATCTTACCGAATTGATGATATTCGTAAAGGACTCGAAAGTTGTGAGTAGGAAGTTGTGTTAAATGGGGATTCAAAAGACCTCTTTGGATATTTAGAGATGTACTGTTTTGAGATCTGAATTTAATCAAATTAAGAACGAGTTGAAGAATTCTCTTTAGCATGATCTTATGCAATCTCTTCTTTTACGATTACTTCAGGCAGTCCTGA ATGCTAAATTGTGGAAGCTTTGGTATCTTGCAGAGCTTCAGAAAGTACATGACTTTCAAGAAGGATTACAATGAGCTGCTTCTATATCTTCTCCGAGAGCTTGTGAAGAATGCACTTCACTTTGAGGAAATTATTCGCGGATCTACATCGGAGCTTACCCACATTAATGTGAAATTGGAAGACCTACAAAGCAAGGCACAGGAACACGAAATTTATGATCTGAAACCCTTCTTCACCAGCTCTCATTTTTCAAATGCTAAGTTTGTGCTGGATGAAGAGCATGGTCTAATCAGGCATCATCTTGCCAGGCAGTCCTGA ATGCTAAATTGTGGAAGCTTTGGTATCTTGCAGAGCTTCAGAAAGTACATGACTTTCAAGAAGGATTACAATGAGCTGCTTCTATATCTTCTCCGAGAGCTTGTGAAGAATGCACTTCACTTTGAGGAAATTATTCGCGGATCTACATCGGAGCTTACCCACATTAATGTGAAATTGGAAGACCTACAAAGCAAGGCACAGGAACACGAAATTTATGATCTGAAACCCTTCTTCACCAGCTCTCATTTTTCAAATGCTAAGTTTGTGCTGGATGAAGAGCATGGTCTAATCAGGCATCATCTTGCCAGGCAGTCCTGA MLNCGSFGILQSFRKYMTFKKDYNELLLYLLRELVKNALHFEEIIRGSTSELTHINVKLEDLQSKAQEHEIYDLKPFFTSSHFSNAKFVLDEEHGLIRHHLARQS
BLAST of Carg11272-RA vs. NCBI nr
Match: XP_022935022.1 (DNA replication licensing factor MCM2-like isoform X1 [Cucurbita moschata]) HSP 1 Score: 188.7 bits (478), Expect = 9.9e-45 Identity = 93/95 (97.89%), Postives = 95/95 (100.00%), Query Frame = 0
BLAST of Carg11272-RA vs. NCBI nr
Match: XP_022982775.1 (DNA replication licensing factor MCM2-like isoform X1 [Cucurbita maxima]) HSP 1 Score: 188.7 bits (478), Expect = 9.9e-45 Identity = 93/95 (97.89%), Postives = 95/95 (100.00%), Query Frame = 0
BLAST of Carg11272-RA vs. NCBI nr
Match: XP_023528435.1 (DNA replication licensing factor MCM2-like isoform X1 [Cucurbita pepo subsp. pepo]) HSP 1 Score: 186.4 bits (472), Expect = 4.9e-44 Identity = 92/95 (96.84%), Postives = 94/95 (98.95%), Query Frame = 0
BLAST of Carg11272-RA vs. NCBI nr
Match: XP_022935023.1 (DNA replication licensing factor MCM2-like isoform X2 [Cucurbita moschata]) HSP 1 Score: 185.3 bits (469), Expect = 1.1e-43 Identity = 91/93 (97.85%), Postives = 93/93 (100.00%), Query Frame = 0
BLAST of Carg11272-RA vs. NCBI nr
Match: XP_022982776.1 (DNA replication licensing factor MCM2-like isoform X2 [Cucurbita maxima]) HSP 1 Score: 185.3 bits (469), Expect = 1.1e-43 Identity = 91/93 (97.85%), Postives = 93/93 (100.00%), Query Frame = 0
BLAST of Carg11272-RA vs. TAIR10
Match: AT1G44900.1 (minichromosome maintenance (MCM2/3/5) family protein) HSP 1 Score: 108.2 bits (269), Expect = 3.1e-24 Identity = 53/88 (60.23%), Postives = 71/88 (80.68%), Query Frame = 0
BLAST of Carg11272-RA vs. Swiss-Prot
Match: sp|B8BKI8|MCM2_ORYSI (DNA replication licensing factor MCM2 OS=Oryza sativa subsp. indica OX=39946 GN=OsI_36121 PE=3 SV=1) HSP 1 Score: 134.0 bits (336), Expect = 9.4e-31 Identity = 64/92 (69.57%), Postives = 79/92 (85.87%), Query Frame = 0
BLAST of Carg11272-RA vs. Swiss-Prot
Match: sp|Q2R482|MCM2_ORYSJ (DNA replication licensing factor MCM2 OS=Oryza sativa subsp. japonica OX=39947 GN=MCM2 PE=2 SV=1) HSP 1 Score: 134.0 bits (336), Expect = 9.4e-31 Identity = 64/92 (69.57%), Postives = 79/92 (85.87%), Query Frame = 0
BLAST of Carg11272-RA vs. Swiss-Prot
Match: sp|Q9LPD9|MCM2_ARATH (DNA replication licensing factor MCM2 OS=Arabidopsis thaliana OX=3702 GN=MCM2 PE=1 SV=1) HSP 1 Score: 108.2 bits (269), Expect = 5.5e-23 Identity = 53/88 (60.23%), Postives = 71/88 (80.68%), Query Frame = 0
BLAST of Carg11272-RA vs. Swiss-Prot
Match: sp|P49735|MCM2_DROME (DNA replication licensing factor Mcm2 OS=Drosophila melanogaster OX=7227 GN=Mcm2 PE=1 SV=1) HSP 1 Score: 55.1 bits (131), Expect = 5.6e-07 Identity = 29/86 (33.72%), Postives = 52/86 (60.47%), Query Frame = 0
BLAST of Carg11272-RA vs. Swiss-Prot
Match: sp|P55861|MCM2_XENLA (DNA replication licensing factor mcm2 OS=Xenopus laevis OX=8355 GN=mcm2 PE=1 SV=2) HSP 1 Score: 50.8 bits (120), Expect = 1.0e-05 Identity = 31/95 (32.63%), Postives = 54/95 (56.84%), Query Frame = 0
BLAST of Carg11272-RA vs. TrEMBL
Match: tr|A0A0A0LCK0|A0A0A0LCK0_CUCSA (DNA helicase OS=Cucumis sativus OX=3659 GN=Csa_3G722880 PE=3 SV=1) HSP 1 Score: 174.9 bits (442), Expect = 9.7e-41 Identity = 86/93 (92.47%), Postives = 90/93 (96.77%), Query Frame = 0
BLAST of Carg11272-RA vs. TrEMBL
Match: tr|A0A1S3CNN0|A0A1S3CNN0_CUCME (DNA helicase OS=Cucumis melo OX=3656 GN=LOC103502828 PE=3 SV=1) HSP 1 Score: 174.5 bits (441), Expect = 1.3e-40 Identity = 86/93 (92.47%), Postives = 90/93 (96.77%), Query Frame = 0
BLAST of Carg11272-RA vs. TrEMBL
Match: tr|W9S3E5|W9S3E5_9ROSA (DNA helicase OS=Morus notabilis OX=981085 GN=L484_007789 PE=3 SV=1) HSP 1 Score: 159.1 bits (401), Expect = 5.5e-36 Identity = 77/93 (82.80%), Postives = 86/93 (92.47%), Query Frame = 0
BLAST of Carg11272-RA vs. TrEMBL
Match: tr|A0A2P4IF61|A0A2P4IF61_QUESU (DNA helicase OS=Quercus suber OX=58331 GN=CFP56_60167 PE=3 SV=1) HSP 1 Score: 158.7 bits (400), Expect = 7.2e-36 Identity = 79/93 (84.95%), Postives = 85/93 (91.40%), Query Frame = 0
BLAST of Carg11272-RA vs. TrEMBL
Match: tr|A0A2N9FV94|A0A2N9FV94_FAGSY (DNA helicase OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS18967 PE=3 SV=1) HSP 1 Score: 158.3 bits (399), Expect = 9.4e-36 Identity = 79/98 (80.61%), Postives = 86/98 (87.76%), Query Frame = 0
The following BLAST results are available for this feature:
The following terms have been associated with this mRNA:
GO Assignments
This mRNA is annotated with the following GO terms.
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
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