Carg10930 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg10930
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Actin-related protein 2/3 complex subunit 3
Location	Cucurbita_argyrosperma_scaffold_034 : 1002554 .. 1004743 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

AAATTAACTGTGGTTAATATTGGCATCTATTCCGTTTCACCCCTACCGCTCGCAGATATTCCGGTGGCTATTCCGACTCGCATCCACTTATCGGAACAGAAAACTCTCCGGTAAGTCTCATCGGATCATGATTGCTCATTCTGCTAACTGTAAAGCCAGAGTCGATCGAACTGCGGATTTCGAAAATTTGATTTTCTGGCTTTGAAGGATTCATTTCTAAAGTACGAGTCTGAAATTATCGCTTAGAGAGATCGATCCGCTTACGCTCACATTTTCTCCAAAGATCTTTGCAGTTGAGAAGAATTTGGATCTCGTACAGGATTGTAAGACATTGATTATTGAGAAAAATATGGTGAGGTTTCAAGTTTTGTAATGCTTTTTCAAGAATTTGGAGCTTGTTTGTGTTCTTGATCCATTTCATCAATTTTAGTGGATTAATTTTACCGTATTTCAAATGGCTGTTTCTCTCTGTATGGATTAAATTAGGACTGAGCGAGCGATTGTCTTCTAGGTTCACCACTCTAGCTTTGTGGATGAGGAAGGAATAAGCAAGGCTTGTGGATGCCCTTTATTTCCTTTGAAAAGTCATGGTCCTGCTCCAGATTCAGATCAAGGTTTAGCTCAAAGTTCAATTTGATTTATATTGTTTGTTCTCTATGCATATCATACTGAAATTGATCTTGTTTGGAAATTCACAGATAAGACTGATATTGTAGATGAAGCGATTTCATTCTTTCGTGCTAATGTCTTCTTTAGAAATTTTGATATTAAGAGTCCTGCTGATAAGCTTCTCATCTACTTAACATTCCACATCAATGTGGCTTTGAAGAGGCTTGAAGGTTGCAGAACTTTGACTGTTGGAAACAAGGCTATAATTAACTTGGGTTTGGAGAATGTCCCTGTGCCCGGAGAGCAGGGCTTTCCCTTTCCTGGTCTCTTCCCTATTCCCAAATCTAATGGGGAAGCAGGTAATGCTTGATCTTAGTTTTCTCTCTCTCTATATATATATGTACTGTACCTACAACAGCACAAACTCACCACCGCTAGTAGATATTGACTTTTTTGAGTTTTTTCCTTCTGAACTTCCTGATAAGATTTTTAAAACGCGTCTACTAGGGAGAGGTTTTCACTCCCTTGTAAGGAATACTTTGTTCTCCTCTCCAACTAAGGTGAGATCTCACAATCCACCCTATTGGGGGCCTGCGACCTTGCTGGCACGCACATTGCCCGGTGTCTTGGCTCTGGAAACATTTGTAACAGCTCAAACCGATTGCTAGCCGATAGTGTCCTCTTTGGACTTTTCCTTTCAGATTTCTCCTCAAAGTTTTTAAAGCGTGTCTACGGGGGAGAAGTTTCCACTCCTTTATAAGGAATGTTTCATTCTCCTCTCCTACCAATGCGGGATCTCACCATCCACCCCCTTTGGGGTTCACCGTCCTTGTTGGCACACCGCCCAATGTCTGGCTCTGATACCATTTGTAACAGCCCAAACCCACAGCTAGCGGATATTGGGCTTCCCCTCAAGGTTTTTAAAATGCGTCTACTAGGAAGTTTCCTTGCAAGGAATGCTTCGTTTTCCTCTTTAACCAACGTGGGATCTCACAATCCACCCCTTCGGAGCCTAGCGTTCTCGTTGACATACCACCCGGTGTTTTGCTCTGATACCATTTGTAACAGCCTAAGCCCATTGACAGATATTGTCCTCTTCAGGCTTTCCCTTTTGGAGTTCCCCTCAAAGTTTTTCAAACACATTTGCTAAGGAGAGGTTTTCACACTCCTATAAAGAATGTTTCGTTCCCCTCTCCAACCGATGTGGGATCTCATAGTACTATTTGTTAACCAGAGATGCTTCACTGCCCAATGATTATCAACCTTTTTCCTTTGCAATTGGTTTGTTTGCTGAATACAAATTAGGCACTTTGTTCTTTTCTTTTTTCAATTCAGTTGATACAGATCTTATGAGTTAATCATGTGTTCAATAGCCTCCTGTTTCTTGTCTTAGGAGTTGATAGTGTTCATAAGCTTCAAATATGTCCATTTTGATATGCAGAGCTATTCAGAGATTACTTGAAGGAGATAAGAGAAGAAACATGTGGGAGACTCTTGAGTGTTGCCTATAGAGCAAATGGAACTCCAAATAAATGGTGGTTAGCATTTGCAAAGAGGAAGTTTATGAACATCGTCACTCCT

mRNA sequence

AAATTAACTGTGGTTAATATTGGCATCTATTCCGTTTCACCCCTACCGCTCGCAGATATTCCGGTGGCTATTCCGACTCGCATCCACTTATCGGAACAGAAAACTCTCCGTACGAGTCTGAAATTATCGCTTAGAGAGATCGATCCGCTTACGCTCACATTTTCTCCAAAGATCTTTGCAGTTGAGAAGAATTTGGATCTCGTACAGGATTGTAAGACATTGATTATTGAGAAAAATATGGTTCACCACTCTAGCTTTGTGGATGAGGAAGGAATAAGCAAGGCTTGTGGATGCCCTTTATTTCCTTTGAAAAGTCATGGTCCTGCTCCAGATTCAGATCAAGATAAGACTGATATTGTAGATGAAGCGATTTCATTCTTTCGTGCTAATGTCTTCTTTAGAAATTTTGATATTAAGAGTCCTGCTGATAAGCTTCTCATCTACTTAACATTCCACATCAATGTGGCTTTGAAGAGGCTTGAAGGTTGCAGAACTTTGACTGTTGGAAACAAGGCTATAATTAACTTGGGTTTGGAGAATGTCCCTGTGCCCGGAGAGCAGGGCTTTCCCTTTCCTGAGCTATTCAGAGATTACTTGAAGGAGATAAGAGAAGAAACATGTGGGAGACTCTTGAGTGTTGCCTATAGAGCAAATGGAACTCCAAATAAATGGTGGTTAGCATTTGCAAAGAGGAAGTTTATGAACATCGTCACTCCT

Coding sequence (CDS)

AAATTAACTGTGGTTAATATTGGCATCTATTCCGTTTCACCCCTACCGCTCGCAGATATTCCGGTGGCTATTCCGACTCGCATCCACTTATCGGAACAGAAAACTCTCCGTACGAGTCTGAAATTATCGCTTAGAGAGATCGATCCGCTTACGCTCACATTTTCTCCAAAGATCTTTGCAGTTGAGAAGAATTTGGATCTCGTACAGGATTGTAAGACATTGATTATTGAGAAAAATATGGTTCACCACTCTAGCTTTGTGGATGAGGAAGGAATAAGCAAGGCTTGTGGATGCCCTTTATTTCCTTTGAAAAGTCATGGTCCTGCTCCAGATTCAGATCAAGATAAGACTGATATTGTAGATGAAGCGATTTCATTCTTTCGTGCTAATGTCTTCTTTAGAAATTTTGATATTAAGAGTCCTGCTGATAAGCTTCTCATCTACTTAACATTCCACATCAATGTGGCTTTGAAGAGGCTTGAAGGTTGCAGAACTTTGACTGTTGGAAACAAGGCTATAATTAACTTGGGTTTGGAGAATGTCCCTGTGCCCGGAGAGCAGGGCTTTCCCTTTCCTGAGCTATTCAGAGATTACTTGAAGGAGATAAGAGAAGAAACATGTGGGAGACTCTTGAGTGTTGCCTATAGAGCAAATGGAACTCCAAATAAATGGTGGTTAGCATTTGCAAAGAGGAAGTTTATGAACATCGTCACTCCT

Protein sequence

KLTVVNIGIYSVSPLPLADIPVAIPTRIHLSEQKTLRTSLKLSLREIDPLTLTFSPKIFAVEKNLDLVQDCKTLIIEKNMVHHSSFVDEEGISKACGCPLFPLKSHGPAPDSDQDKTDIVDEAISFFRANVFFRNFDIKSPADKLLIYLTFHINVALKRLEGCRTLTVGNKAIINLGLENVPVPGEQGFPFPELFRDYLKEIREETCGRLLSVAYRANGTPNKWWLAFAKRKFMNIVTP

Homology

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BLAST of Carg10930 vs. NCBI nr
Match: XP_022946311.1 (actin-related protein 2/3 complex subunit 3-like [Cucurbita moschata] >XP_022946312.1 actin-related protein 2/3 complex subunit 3-like [Cucurbita moschata])

HSP 1 Score: 331.3 bits (848), Expect = 2.8e-87
Identity = 160/172 (93.02%), Postives = 160/172 (93.02%), Query Frame = 0


Query: 80  MVHHSSFVDEEGISKACGCPLFPLKSHGPAPDSDQDKTDIVDEAISFFRANVFFRNFDIK 139
           MVHHSSFVDEEGISKACGCPLFPLKSHGPAPDSDQDKTDIVDEAISFFRANVFFRNFDIK
Sbjct: 1   MVHHSSFVDEEGISKACGCPLFPLKSHGPAPDSDQDKTDIVDEAISFFRANVFFRNFDIK 60

Query: 140 SPADKLLIYLTFHINVALKRLEGCRTLTVGNKAIINLGLENVPVPGEQGFPFP------- 199
           SPADKLLIYLTFHINVALKRLEGCRTLTVGNKAIINLGLENVPVPGEQGFPFP       
Sbjct: 61  SPADKLLIYLTFHINVALKRLEGCRTLTVGNKAIINLGLENVPVPGEQGFPFPGLFPIPK 120

Query: 200 -----ELFRDYLKEIREETCGRLLSVAYRANGTPNKWWLAFAKRKFMNIVTP 240
                ELFRDYLKEIREETCGRLLSVAYRANGTPNKWWLAFAKRKFMNIVTP
Sbjct: 121 SNGEAELFRDYLKEIREETCGRLLSVAYRANGTPNKWWLAFAKRKFMNIVTP 172

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BLAST of Carg10930 vs. NCBI nr
Match: XP_023546743.1 (actin-related protein 2/3 complex subunit 3-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 327.4 bits (838), Expect = 4.0e-86
Identity = 159/172 (92.44%), Postives = 159/172 (92.44%), Query Frame = 0


Query: 80  MVHHSSFVDEEGISKACGCPLFPLKSHGPAPDSDQDKTDIVDEAISFFRANVFFRNFDIK 139
           MVHHSSFVDEEGISKACGCPLFPLKSHGPAPDSDQDKTDIVDEAISFFRANVFFRNFDIK
Sbjct: 1   MVHHSSFVDEEGISKACGCPLFPLKSHGPAPDSDQDKTDIVDEAISFFRANVFFRNFDIK 60

Query: 140 SPADKLLIYLTFHINVALKRLEGCRTLTVGNKAIINLGLENVPVPGEQGFPFP------- 199
           SPADKLLIYLTFHINVALKRLEGCRTLTVGNKAIINLGLENVPVPGEQGFPFP       
Sbjct: 61  SPADKLLIYLTFHINVALKRLEGCRTLTVGNKAIINLGLENVPVPGEQGFPFPGLFPIPK 120

Query: 200 -----ELFRDYLKEIREETCGRLLSVAYRANGTPNKWWLAFAKRKFMNIVTP 240
                ELFRDYLKEIREET GRLLSVAYRANGTPNKWWLAFAKRKFMNIVTP
Sbjct: 121 SNGEAELFRDYLKEIREETSGRLLSVAYRANGTPNKWWLAFAKRKFMNIVTP 172

[Close]

BLAST of Carg10930 vs. NCBI nr
Match: XP_022999051.1 (actin-related protein 2/3 complex subunit 3-like [Cucurbita maxima])

HSP 1 Score: 318.9 bits (816), Expect = 1.4e-83
Identity = 154/172 (89.53%), Postives = 157/172 (91.28%), Query Frame = 0


Query: 80  MVHHSSFVDEEGISKACGCPLFPLKSHGPAPDSDQDKTDIVDEAISFFRANVFFRNFDIK 139
           MVHHSSFVDEEGI+KACGCPL+PLKSHGPAPD DQDKTDIVDEAISFFRANVFFRNFDIK
Sbjct: 1   MVHHSSFVDEEGINKACGCPLYPLKSHGPAPDLDQDKTDIVDEAISFFRANVFFRNFDIK 60

Query: 140 SPADKLLIYLTFHINVALKRLEGCRTLTVGNKAIINLGLENVPVPGEQGFPFP------- 199
           SPADKLLIYLTFHINVALKRLEGCRTLTVG+KAIINLGLENVPVPGE GFPFP       
Sbjct: 61  SPADKLLIYLTFHINVALKRLEGCRTLTVGSKAIINLGLENVPVPGEHGFPFPGLFPIPK 120

Query: 200 -----ELFRDYLKEIREETCGRLLSVAYRANGTPNKWWLAFAKRKFMNIVTP 240
                ELFRDYLKEIREET GRLLSVAYRANGTPNKWWLAFAKRKFMNIVTP
Sbjct: 121 SNGEAELFRDYLKEIREETSGRLLSVAYRANGTPNKWWLAFAKRKFMNIVTP 172

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BLAST of Carg10930 vs. NCBI nr
Match: XP_008457213.1 (PREDICTED: actin-related protein 2/3 complex subunit 3 [Cucumis melo])

HSP 1 Score: 301.2 bits (770), Expect = 3.1e-78
Identity = 148/174 (85.06%), Postives = 153/174 (87.93%), Query Frame = 0


Query: 80  MVHHSSFVDEEGISKACGCPLFPLKSH--GPAPDSDQDKTDIVDEAISFFRANVFFRNFD 139
           MVHHSSFVDEEGISKACGCPL PLKSH  GPAP SDQDKTDIVDEAI+FFRANVFFRNFD
Sbjct: 1   MVHHSSFVDEEGISKACGCPLLPLKSHIKGPAPVSDQDKTDIVDEAITFFRANVFFRNFD 60

Query: 140 IKSPADKLLIYLTFHINVALKRLEGCRTLTVGNKAIINLGLENVPVPGEQGFPFP----- 199
           IKSPADKLLIYLTF+INVALKRLEGCRTL VG KAIINLGLENVPVPGE GFPFP     
Sbjct: 61  IKSPADKLLIYLTFYINVALKRLEGCRTLAVGTKAIINLGLENVPVPGESGFPFPGLFPI 120

Query: 200 -------ELFRDYLKEIREETCGRLLSVAYRANGTPNKWWLAFAKRKFMNIVTP 240
                  ELFR+YLK+IREET GRLLSVAYRANGTPNKWWLAFAKRKFMNI+ P
Sbjct: 121 PQSNEEAELFRNYLKQIREETSGRLLSVAYRANGTPNKWWLAFAKRKFMNIIIP 174

[Close]

BLAST of Carg10930 vs. NCBI nr
Match: XP_022938181.1 (actin-related protein 2/3 complex subunit 3 isoform X1 [Cucurbita moschata] >XP_022965982.1 actin-related protein 2/3 complex subunit 3 [Cucurbita maxima])

HSP 1 Score: 299.3 bits (765), Expect = 1.2e-77
Identity = 147/174 (84.48%), Postives = 153/174 (87.93%), Query Frame = 0


Query: 80  MVHHSSFVDEEGISKACGCPLFPLKSH--GPAPDSDQDKTDIVDEAISFFRANVFFRNFD 139
           MVHHSSFVDEEGISKACGCPL PLKSH  GPAP SDQDKTDIVDEAI+FFRANVFFRNFD
Sbjct: 1   MVHHSSFVDEEGISKACGCPLLPLKSHIKGPAPVSDQDKTDIVDEAITFFRANVFFRNFD 60

Query: 140 IKSPADKLLIYLTFHINVALKRLEGCRTLTVGNKAIINLGLENVPVPGEQGFPFP----- 199
           IKSPADKLLIYLTF+INVALKRLEGCRTL VG KAIINLGLENVPVPGE GFPFP     
Sbjct: 61  IKSPADKLLIYLTFYINVALKRLEGCRTLAVGTKAIINLGLENVPVPGELGFPFPGLFPI 120

Query: 200 -------ELFRDYLKEIREETCGRLLSVAYRANGTPNKWWLAFAKRKFMNIVTP 240
                  ELFR+YL++IREET GRLLSVAYRANGTPNKWWLAFAKRKFMNI+ P
Sbjct: 121 PQSNEEAELFRNYLRQIREETSGRLLSVAYRANGTPNKWWLAFAKRKFMNIIIP 174

[Close]

BLAST of Carg10930 vs. TAIR10
Match: AT1G60430.1 (actin-related protein C3)

HSP 1 Score: 287.7 bits (735), Expect = 6.4e-78
Identity = 139/172 (80.81%), Postives = 151/172 (87.79%), Query Frame = 0


Query: 80  MVHHSSFVDEEGISKACGCPLFPLKSH--GPAPDSDQDKTDIVDEAISFFRANVFFRNFD 139
           MV+HSSFVDEEG++KACGCPL PLKSH  GPAP S+QDKTDIVDEAI+FFRANVFF NFD
Sbjct: 1   MVYHSSFVDEEGVTKACGCPLLPLKSHIKGPAPVSEQDKTDIVDEAITFFRANVFFTNFD 60

Query: 140 IKSPADKLLIYLTFHINVALKRLEGCRTLTVGNKAIINLGLENVPVPGEQGFPFP----- 199
           IKSPADKLLIYLTF+INVALKRLEGCRTL VG KAIINLGLE++PVPGE GFPFP     
Sbjct: 61  IKSPADKLLIYLTFYINVALKRLEGCRTLAVGTKAIINLGLEDIPVPGETGFPFPGLFSL 120

Query: 200 -------ELFRDYLKEIREETCGRLLSVAYRANGTPNKWWLAFAKRKFMNIV 238
                  ELFR+YLK++REET GRLLSVAYRANGTPNKWWLAFAKRKFMN+V
Sbjct: 121 PQSQDEAELFRNYLKQVREETSGRLLSVAYRANGTPNKWWLAFAKRKFMNVV 172

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BLAST of Carg10930 vs. Swiss-Prot
Match: sp|Q1ECJ7|ARPC3_ARATH (Actin-related protein 2/3 complex subunit 3 OS=Arabidopsis thaliana OX=3702 GN=ARPC3 PE=1 SV=1)

HSP 1 Score: 287.7 bits (735), Expect = 1.2e-76
Identity = 139/172 (80.81%), Postives = 151/172 (87.79%), Query Frame = 0


Query: 80  MVHHSSFVDEEGISKACGCPLFPLKSH--GPAPDSDQDKTDIVDEAISFFRANVFFRNFD 139
           MV+HSSFVDEEG++KACGCPL PLKSH  GPAP S+QDKTDIVDEAI+FFRANVFF NFD
Sbjct: 1   MVYHSSFVDEEGVTKACGCPLLPLKSHIKGPAPVSEQDKTDIVDEAITFFRANVFFTNFD 60

Query: 140 IKSPADKLLIYLTFHINVALKRLEGCRTLTVGNKAIINLGLENVPVPGEQGFPFP----- 199
           IKSPADKLLIYLTF+INVALKRLEGCRTL VG KAIINLGLE++PVPGE GFPFP     
Sbjct: 61  IKSPADKLLIYLTFYINVALKRLEGCRTLAVGTKAIINLGLEDIPVPGETGFPFPGLFSL 120

Query: 200 -------ELFRDYLKEIREETCGRLLSVAYRANGTPNKWWLAFAKRKFMNIV 238
                  ELFR+YLK++REET GRLLSVAYRANGTPNKWWLAFAKRKFMN+V
Sbjct: 121 PQSQDEAELFRNYLKQVREETSGRLLSVAYRANGTPNKWWLAFAKRKFMNVV 172

[Close]

BLAST of Carg10930 vs. Swiss-Prot
Match: sp|Q3T035|ARPC3_BOVIN (Actin-related protein 2/3 complex subunit 3 OS=Bos taurus OX=9913 GN=ARPC3 PE=1 SV=3)

HSP 1 Score: 139.0 bits (349), Expect = 6.7e-32
Identity = 74/170 (43.53%), Postives = 106/170 (62.35%), Query Frame = 0


Query: 82  HHSSFVDEEGISKACG-CPLFPLKSH--GPAPDSDQDKTDIVDEAISFFRANVFFRNFDI 141
           +HSS +D +  +K  G   L P++S   GPAP   +D TDIVDEAI +F+ANVFF+N++I
Sbjct: 4   YHSSLMDPD--TKLIGNMALLPIRSQFKGPAPRETKD-TDIVDEAIYYFKANVFFKNYEI 63

Query: 142 KSPADKLLIYLTFHINVALKRLEGCRTLTVGNKAIINLGLENVPVPGEQGFPF------- 201
           K+ AD+ LIY+T +I+  LK+L+ C + + G K +  LG+ N P+PGE GFP        
Sbjct: 64  KNEADRTLIYITLYISECLKKLQKCNSKSQGEKEMYTLGITNFPIPGEPGFPLNAIYAKP 123

Query: 202 -----PELFRDYLKEIREETCGRLLSVAY-RANGTPNKWWLAFAKRKFMN 236
                 E+ R YL+++R+ET  RL    +   N  P+KWW  F KR+FMN
Sbjct: 124 ANKQEDEVMRAYLQQLRQETGLRLCEKVFDPQNDKPSKWWTCFVKRQFMN 170

[Close]

BLAST of Carg10930 vs. Swiss-Prot
Match: sp|O15145|ARPC3_HUMAN (Actin-related protein 2/3 complex subunit 3 OS=Homo sapiens OX=9606 GN=ARPC3 PE=1 SV=3)

HSP 1 Score: 139.0 bits (349), Expect = 6.7e-32
Identity = 74/170 (43.53%), Postives = 106/170 (62.35%), Query Frame = 0


Query: 82  HHSSFVDEEGISKACG-CPLFPLKSH--GPAPDSDQDKTDIVDEAISFFRANVFFRNFDI 141
           +HSS +D +  +K  G   L P++S   GPAP   +D TDIVDEAI +F+ANVFF+N++I
Sbjct: 4   YHSSLMDPD--TKLIGNMALLPIRSQFKGPAPRETKD-TDIVDEAIYYFKANVFFKNYEI 63

Query: 142 KSPADKLLIYLTFHINVALKRLEGCRTLTVGNKAIINLGLENVPVPGEQGFPF------- 201
           K+ AD+ LIY+T +I+  LK+L+ C + + G K +  LG+ N P+PGE GFP        
Sbjct: 64  KNEADRTLIYITLYISECLKKLQKCNSKSQGEKEMYTLGITNFPIPGEPGFPLNAIYAKP 123

Query: 202 -----PELFRDYLKEIREETCGRLLSVAY-RANGTPNKWWLAFAKRKFMN 236
                 E+ R YL+++R+ET  RL    +   N  P+KWW  F KR+FMN
Sbjct: 124 ANKQEDEVMRAYLQQLRQETGLRLCEKVFDPQNDKPSKWWTCFVKRQFMN 170

[Close]

BLAST of Carg10930 vs. Swiss-Prot
Match: sp|Q9JM76|ARPC3_MOUSE (Actin-related protein 2/3 complex subunit 3 OS=Mus musculus OX=10090 GN=Arpc3 PE=1 SV=3)

HSP 1 Score: 138.3 bits (347), Expect = 1.1e-31
Identity = 74/170 (43.53%), Postives = 106/170 (62.35%), Query Frame = 0


Query: 82  HHSSFVDEEGISKACG-CPLFPLKSH--GPAPDSDQDKTDIVDEAISFFRANVFFRNFDI 141
           +HSS +D +  +K  G   L PL+S   GPAP   +D TDIVDEAI +F+ANVFF+N++I
Sbjct: 4   YHSSLMDPD--TKLIGNMALLPLRSQFKGPAPRETKD-TDIVDEAIYYFKANVFFKNYEI 63

Query: 142 KSPADKLLIYLTFHINVALKRLEGCRTLTVGNKAIINLGLENVPVPGEQGFPF------- 201
           K+ AD+ LIY+T +I+  LK+L+ C + + G K +  LG+ N P+PGE GFP        
Sbjct: 64  KNEADRTLIYITLYISECLKKLQKCNSKSQGEKEMYTLGITNFPIPGEPGFPLNAIYAKP 123

Query: 202 -----PELFRDYLKEIREETCGRLLSVAY-RANGTPNKWWLAFAKRKFMN 236
                 E+ R YL+++R+ET  RL    +   +  P+KWW  F KR+FMN
Sbjct: 124 ASKQEDEMMRAYLQQLRQETGLRLCEKVFDPQSDKPSKWWTCFVKRQFMN 170

[Close]

BLAST of Carg10930 vs. Swiss-Prot
Match: sp|Q9Y7J4|ARPC3_SCHPO (Actin-related protein 2/3 complex subunit 3 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=arc3 PE=1 SV=1)

HSP 1 Score: 124.8 bits (312), Expect = 1.3e-27
Identity = 68/169 (40.24%), Postives = 91/169 (53.85%), Query Frame = 0


Query: 82  HHSSFVDEEGISKACGCPLFPLKS--HGPAPDSDQDKTDIVDEAISFFRANVFFRNFDIK 141
           +HSSF+    +       + PLK+   GPA  +D+ + DI+DE I  FRAN FFRNF+IK
Sbjct: 4   YHSSFLSLTDVPTTGNIAMLPLKTKFRGPAYPADESQMDIIDECIGLFRANCFFRNFEIK 63

Query: 142 SPADKLLIYLTFHINVALKRLEGCRTLTVGNKAIINLGLENVPVPGEQGFPF-------- 201
            PAD+ LIY T  I+  L R+ G        + + +L LEN  +PG  GFP         
Sbjct: 64  GPADRTLIYGTLFISECLGRVNGL-NYRDAERQLNSLALENFSIPGSAGFPLNALYAPPL 123

Query: 202 ----PELFRDYLKEIREETCGRLLSVAYRA-NGTPNKWWLAFAKRKFMN 236
                E+ R YL + R+E   RLLS  Y      P+KWW  F+KR+FMN
Sbjct: 124 SPQDAEIMRTYLTQFRQELAYRLLSHVYATEKDHPSKWWTCFSKRRFMN 171

[Close]

BLAST of Carg10930 vs. TrEMBL
Match: tr|A0A1S3C5N9|A0A1S3C5N9_CUCME (Actin-related protein 2/3 complex subunit 3 OS=Cucumis melo OX=3656 GN=LOC103496939 PE=3 SV=1)

HSP 1 Score: 301.2 bits (770), Expect = 2.1e-78
Identity = 148/174 (85.06%), Postives = 153/174 (87.93%), Query Frame = 0


Query: 80  MVHHSSFVDEEGISKACGCPLFPLKSH--GPAPDSDQDKTDIVDEAISFFRANVFFRNFD 139
           MVHHSSFVDEEGISKACGCPL PLKSH  GPAP SDQDKTDIVDEAI+FFRANVFFRNFD
Sbjct: 1   MVHHSSFVDEEGISKACGCPLLPLKSHIKGPAPVSDQDKTDIVDEAITFFRANVFFRNFD 60

Query: 140 IKSPADKLLIYLTFHINVALKRLEGCRTLTVGNKAIINLGLENVPVPGEQGFPFP----- 199
           IKSPADKLLIYLTF+INVALKRLEGCRTL VG KAIINLGLENVPVPGE GFPFP     
Sbjct: 61  IKSPADKLLIYLTFYINVALKRLEGCRTLAVGTKAIINLGLENVPVPGESGFPFPGLFPI 120

Query: 200 -------ELFRDYLKEIREETCGRLLSVAYRANGTPNKWWLAFAKRKFMNIVTP 240
                  ELFR+YLK+IREET GRLLSVAYRANGTPNKWWLAFAKRKFMNI+ P
Sbjct: 121 PQSNEEAELFRNYLKQIREETSGRLLSVAYRANGTPNKWWLAFAKRKFMNIIIP 174

[Close]

BLAST of Carg10930 vs. TrEMBL
Match: tr|A0A0A0LI55|A0A0A0LI55_CUCSA (Actin-related protein 2/3 complex subunit 3 OS=Cucumis sativus OX=3659 GN=Csa_2G008100 PE=3 SV=1)

HSP 1 Score: 296.6 bits (758), Expect = 5.1e-77
Identity = 146/174 (83.91%), Postives = 151/174 (86.78%), Query Frame = 0


Query: 80  MVHHSSFVDEEGISKACGCPLFPLKSH--GPAPDSDQDKTDIVDEAISFFRANVFFRNFD 139
           MVHHSSFVDEEGISKACGCPL PLKSH  GPAP SDQDKTDIVDEAI+FFRANVFFRNFD
Sbjct: 1   MVHHSSFVDEEGISKACGCPLLPLKSHIKGPAPVSDQDKTDIVDEAITFFRANVFFRNFD 60

Query: 140 IKSPADKLLIYLTFHINVALKRLEGCRTLTVGNKAIINLGLENVPVPGEQGFPFP----- 199
           IKS ADKLLIYLTF+INVALKRLEGCRTL VG KAIINLGLENVPVPGE GFPFP     
Sbjct: 61  IKSAADKLLIYLTFYINVALKRLEGCRTLAVGTKAIINLGLENVPVPGESGFPFPGLFPI 120

Query: 200 -------ELFRDYLKEIREETCGRLLSVAYRANGTPNKWWLAFAKRKFMNIVTP 240
                  ELFR+YLK+IREET GRLLSVAYR NGTPNKWWLAFAKRKFMNI+ P
Sbjct: 121 PQSNEEAELFRNYLKQIREETSGRLLSVAYRTNGTPNKWWLAFAKRKFMNIIIP 174

[Close]

BLAST of Carg10930 vs. TrEMBL
Match: tr|D7T4W9|D7T4W9_VITVI (Actin-related protein 2/3 complex subunit 3 OS=Vitis vinifera OX=29760 GN=VIT_11s0118g00300 PE=3 SV=1)

HSP 1 Score: 288.5 bits (737), Expect = 1.4e-74
Identity = 141/174 (81.03%), Postives = 149/174 (85.63%), Query Frame = 0


Query: 80  MVHHSSFVDEEGISKACGCPLFPLKSH--GPAPDSDQDKTDIVDEAISFFRANVFFRNFD 139
           MVHHSSFVD+EGI+KACGCPL PLKSH  GPAP SDQD+TDIVDEAI+FFRANVFFRNFD
Sbjct: 20  MVHHSSFVDDEGITKACGCPLLPLKSHIKGPAPVSDQDRTDIVDEAITFFRANVFFRNFD 79

Query: 140 IKSPADKLLIYLTFHINVALKRLEGCRTLTVGNKAIINLGLENVPVPGEQGFPFP----- 199
           IKS ADKLLIYLTF+INVALKRLEGCRTL  G KAIINLGLE VPVPGE GFPFP     
Sbjct: 80  IKSSADKLLIYLTFYINVALKRLEGCRTLAEGTKAIINLGLEKVPVPGESGFPFPGLFAL 139

Query: 200 -------ELFRDYLKEIREETCGRLLSVAYRANGTPNKWWLAFAKRKFMNIVTP 240
                  ELFR+YLK+IREET GRLLSVAYR NGTPNKWWLAFAKRKFMNI+ P
Sbjct: 140 PLSQPEAELFRNYLKQIREETSGRLLSVAYRPNGTPNKWWLAFAKRKFMNIIVP 193

[Close]

BLAST of Carg10930 vs. TrEMBL
Match: tr|G7JGJ3|G7JGJ3_MEDTR (Actin-related protein 2/3 complex subunit 3 OS=Medicago truncatula OX=3880 GN=11437771 PE=3 SV=1)

HSP 1 Score: 288.1 bits (736), Expect = 1.8e-74
Identity = 139/173 (80.35%), Postives = 151/173 (87.28%), Query Frame = 0


Query: 80  MVHHSSFVDEEGISKACGCPLFPLKSH--GPAPDSDQDKTDIVDEAISFFRANVFFRNFD 139
           MV+HSSFVD+EGI++ACGCPL PLKSH  GPAP SDQD+TDIVDEAI+FFRANVFFRNFD
Sbjct: 1   MVYHSSFVDDEGINRACGCPLLPLKSHIKGPAPVSDQDRTDIVDEAITFFRANVFFRNFD 60

Query: 140 IKSPADKLLIYLTFHINVALKRLEGCRTLTVGNKAIINLGLENVPVPGEQGFPFP----- 199
           IKSPADKLLIYLTF+INVALK+LEGCRTL  G KAIINLGLENVPVPGE GFPFP     
Sbjct: 61  IKSPADKLLIYLTFYINVALKKLEGCRTLAEGTKAIINLGLENVPVPGESGFPFPGLFPL 120

Query: 200 -------ELFRDYLKEIREETCGRLLSVAYRANGTPNKWWLAFAKRKFMNIVT 239
                  ELFR+YLK+IREET GRLLSVAYR NGTPNKWWLAFAKRKFMN++T
Sbjct: 121 PQSHKEAELFRNYLKQIREETSGRLLSVAYRPNGTPNKWWLAFAKRKFMNVIT 173

[Close]

BLAST of Carg10930 vs. TrEMBL
Match: tr|A0A178W794|A0A178W794_ARATH (Actin-related protein 2/3 complex subunit 3 OS=Arabidopsis thaliana OX=3702 GN=AXX17_At1g53460 PE=3 SV=1)

HSP 1 Score: 288.1 bits (736), Expect = 1.8e-74
Identity = 140/172 (81.40%), Postives = 151/172 (87.79%), Query Frame = 0


Query: 80  MVHHSSFVDEEGISKACGCPLFPLKSH--GPAPDSDQDKTDIVDEAISFFRANVFFRNFD 139
           MV+HSSFVDEEGI+KACGCPL PLKSH  GPAP S+QDKTDIVDEAI+FFRANVFF NFD
Sbjct: 1   MVYHSSFVDEEGITKACGCPLLPLKSHIKGPAPISEQDKTDIVDEAITFFRANVFFTNFD 60

Query: 140 IKSPADKLLIYLTFHINVALKRLEGCRTLTVGNKAIINLGLENVPVPGEQGFPFP----- 199
           IKSPADKLLIYLTF+INVALKRLEGCRTL VG KAIINLGLE++PVPGE GFPFP     
Sbjct: 61  IKSPADKLLIYLTFYINVALKRLEGCRTLAVGTKAIINLGLEDIPVPGETGFPFPGLFSL 120

Query: 200 -------ELFRDYLKEIREETCGRLLSVAYRANGTPNKWWLAFAKRKFMNIV 238
                  ELFR+YLK++REET GRLLSVAYRANGTPNKWWLAFAKRKFMN+V
Sbjct: 121 PQSQDEAELFRNYLKQVREETSGRLLSVAYRANGTPNKWWLAFAKRKFMNVV 172

The following BLAST results are available for this feature:

BLAST of Carg10930 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022946311.1	2.8e-87	93.02	actin-related protein 2/3 complex subunit 3-like [Cucurbita moschata] >XP_022946...	[more]
XP_023546743.1	4.0e-86	92.44	actin-related protein 2/3 complex subunit 3-like [Cucurbita pepo subsp. pepo]	[more]
XP_022999051.1	1.4e-83	89.53	actin-related protein 2/3 complex subunit 3-like [Cucurbita maxima]	[more]
XP_008457213.1	3.1e-78	85.06	PREDICTED: actin-related protein 2/3 complex subunit 3 [Cucumis melo]	[more]
XP_022938181.1	1.2e-77	84.48	actin-related protein 2/3 complex subunit 3 isoform X1 [Cucurbita moschata] >XP_...	[more]

BLAST of Carg10930 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G60430.1	6.4e-78	80.81	actin-related protein C3	[more]

BLAST of Carg10930 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q1ECJ7\|ARPC3_ARATH	1.2e-76	80.81	Actin-related protein 2/3 complex subunit 3 OS=Arabidopsis thaliana OX=3702 GN=A...	[more]
sp\|Q3T035\|ARPC3_BOVIN	6.7e-32	43.53	Actin-related protein 2/3 complex subunit 3 OS=Bos taurus OX=9913 GN=ARPC3 PE=1 ...	[more]
sp\|O15145\|ARPC3_HUMAN	6.7e-32	43.53	Actin-related protein 2/3 complex subunit 3 OS=Homo sapiens OX=9606 GN=ARPC3 PE=...	[more]
sp\|Q9JM76\|ARPC3_MOUSE	1.1e-31	43.53	Actin-related protein 2/3 complex subunit 3 OS=Mus musculus OX=10090 GN=Arpc3 PE...	[more]
sp\|Q9Y7J4\|ARPC3_SCHPO	1.3e-27	40.24	Actin-related protein 2/3 complex subunit 3 OS=Schizosaccharomyces pombe (strain...	[more]

BLAST of Carg10930 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3C5N9\|A0A1S3C5N9_CUCME	2.1e-78	85.06	Actin-related protein 2/3 complex subunit 3 OS=Cucumis melo OX=3656 GN=LOC103496...	[more]
tr\|A0A0A0LI55\|A0A0A0LI55_CUCSA	5.1e-77	83.91	Actin-related protein 2/3 complex subunit 3 OS=Cucumis sativus OX=3659 GN=Csa_2G...	[more]
tr\|D7T4W9\|D7T4W9_VITVI	1.4e-74	81.03	Actin-related protein 2/3 complex subunit 3 OS=Vitis vinifera OX=29760 GN=VIT_11...	[more]
tr\|G7JGJ3\|G7JGJ3_MEDTR	1.8e-74	80.35	Actin-related protein 2/3 complex subunit 3 OS=Medicago truncatula OX=3880 GN=11...	[more]
tr\|A0A178W794\|A0A178W794_ARATH	1.8e-74	81.40	Actin-related protein 2/3 complex subunit 3 OS=Arabidopsis thaliana OX=3702 GN=A...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Cellular Component**
Term	Definition
GO:0005885	Arp2/3 protein complex
GO:0005856	cytoskeleton

Vocabulary: **Biological Process**
Term	Definition
GO:0034314	Arp2/3 complex-mediated actin nucleation
GO:0030833	regulation of actin filament polymerization

Vocabulary: **INTERPRO**
Term	Definition
IPR036753	ARPC3_sf
IPR007204	ARPC3

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0034314	Arp2/3 complex-mediated actin nucleation
biological_process	GO:0030833	regulation of actin filament polymerization
cellular_component	GO:0005885	Arp2/3 protein complex
cellular_component	GO:0005856	cytoskeleton
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg10930-RA	Carg10930-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR007204	Actin-related protein 2/3 complex subunit 3	PFAM	PF04062	P21-Arc	coord: 82..235 e-value: 3.3E-48 score: 163.9
IPR007204	Actin-related protein 2/3 complex subunit 3	PANTHER	PTHR12391	ARP2/3 COMPLEX 21 KD SUBUNIT	coord: 81..236
IPR036753	Actin-related protein 2/3 complex subunit 3 superfamily	GENE3D	G3DSA:1.10.1760.10		coord: 80..238 e-value: 1.8E-49 score: 169.9
IPR036753	Actin-related protein 2/3 complex subunit 3 superfamily	SUPERFAMILY	SSF69060	Arp2/3 complex 21 kDa subunit ARPC3	coord: 82..235

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg10930	Cla016675	Watermelon (97103) v1	carwmB0569
Carg10930	Csa2G008100	Cucumber (Chinese Long) v2	carcuB0598
Carg10930	MELO3C004473	Melon (DHL92) v3.5.1	carmeB0575
Carg10930	ClCG11G003410	Watermelon (Charleston Gray)	carwcgB0553
Carg10930	CSPI02G02070	Wild cucumber (PI 183967)	carcpiB0603
Carg10930	Cucsa.132460	Cucumber (Gy14) v1	carcgyB0645
Carg10930	CmaCh05G012630	Cucurbita maxima (Rimu)	carcmaB0802
Carg10930	CmoCh05G012910	Cucurbita moschata (Rifu)	carcmoB0779
Carg10930	Lsi11G003530	Bottle gourd (USVL1VR-Ls)	carlsiB514
Carg10930	Cp4.1LG11g10520	Cucurbita pepo (Zucchini)	carcpeB0809
Carg10930	CsGy2G002160	Cucumber (Gy14) v2	carcgybB0573
Carg10930	MELO3C004473.2	Melon (DHL92) v3.6.1	carmedB0582
Carg10930	CsaV3_2G003270	Cucumber (Chinese Long) v3	carcucB0605
Carg10930	Cla97C11G209900	Watermelon (97103) v2	carwmbB0591
Carg10930	Bhi06G001604	Wax gourd	carwgoB0678

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Carg10930	Cucurbita moschata (Rifu)	carcmoB0776
Carg10930	Cucurbita pepo (Zucchini)	carcpeB0815
Carg10930	Melon (DHL92) v3.5.1	carmeB0577
Carg10930	Melon (DHL92) v3.6.1	carmedB0584
Carg10930	Silver-seed gourd	carcarB296
Carg10930	Cucurbita maxima (Rimu)	carcmaB0797