Carg10479 (gene) Silver-seed gourd

NameCarg10479
Typegene
OrganismCucurbita argyrosperma (Silver-seed gourd)
DescriptionProtein bic1
LocationCucurbita_argyrosperma_scaffold_098 : 403125 .. 403511 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACTCTCCCTATCAAACCCAACTCCCCATTATCGCCTCATCTCCAACACTCAGATCAAACCACTCACCATCACGACCTTCACACCTCCTCCACCGTCCCGTCCGATGACACCCCCCGAGAGAGGTTAAAGCGCCACCGTGTCGCTGTGGCCGGGCACGTTTGGATCCCTGACAAGTGGGGAAAAGAAGAGTTCTTGAAGGATTGGATCGACGGCTCTGCATTTGAAGCCTCTTTGTTCCCCTCCGGGATCATGTTGGCTCGCCAGGCTTTGGCTCGAGAAGCTAAGAGATCGTCGCCGAATAACAACACCGCCACCGCCGCCACCACCACCACCACCGCCCCTGCTGCTGCTTCCGGAGATTTGAGATTATTAAACGGTTGTTAA

mRNA sequence

ATGACTCTCCCTATCAAACCCAACTCCCCATTATCGCCTCATCTCCAACACTCAGATCAAACCACTCACCATCACGACCTTCACACCTCCTCCACCGTCCCGTCCGATGACACCCCCCGAGAGAGGTTAAAGCGCCACCGTGTCGCTGTGGCCGGGCACGTTTGGATCCCTGACAAGTGGGGAAAAGAAGAGTTCTTGAAGGATTGGATCGACGGCTCTGCATTTGAAGCCTCTTTGTTCCCCTCCGGGATCATGTTGGCTCGCCAGGCTTTGGCTCGAGAAGCTAAGAGATCGTCGCCGAATAACAACACCGCCACCGCCGCCACCACCACCACCACCGCCCCTGCTGCTGCTTCCGGAGATTTGAGATTATTAAACGGTTGTTAA

Coding sequence (CDS)

ATGACTCTCCCTATCAAACCCAACTCCCCATTATCGCCTCATCTCCAACACTCAGATCAAACCACTCACCATCACGACCTTCACACCTCCTCCACCGTCCCGTCCGATGACACCCCCCGAGAGAGGTTAAAGCGCCACCGTGTCGCTGTGGCCGGGCACGTTTGGATCCCTGACAAGTGGGGAAAAGAAGAGTTCTTGAAGGATTGGATCGACGGCTCTGCATTTGAAGCCTCTTTGTTCCCCTCCGGGATCATGTTGGCTCGCCAGGCTTTGGCTCGAGAAGCTAAGAGATCGTCGCCGAATAACAACACCGCCACCGCCGCCACCACCACCACCACCGCCCCTGCTGCTGCTTCCGGAGATTTGAGATTATTAAACGGTTGTTAA

Protein sequence

MTLPIKPNSPLSPHLQHSDQTTHHHDLHTSSTVPSDDTPRERLKRHRVAVAGHVWIPDKWGKEEFLKDWIDGSAFEASLFPSGIMLARQALAREAKRSSPNNNTATAATTTTTAPAAASGDLRLLNGC
BLAST of Carg10479 vs. NCBI nr
Match: XP_011657706.1 (PREDICTED: uncharacterized protein LOC105435886 [Cucumis sativus] >KGN48263.1 hypothetical protein Csa_6G452640 [Cucumis sativus])

HSP 1 Score: 127.5 bits (319), Expect = 3.3e-26
Identity = 70/101 (69.31%), Postives = 75/101 (74.26%), Query Frame = 0

Query: 1   MTLPI-KPNS----PLSPHLQHSDQTTHHHDLHTSSTVPSDDTPRERLKRHRVAVAGHVW 60
           MTLP   PNS    P  PHLQ SDQT   HD         D++ RERLKRHR+AVAGHVW
Sbjct: 1   MTLPSPNPNSSLFLPHHPHLQESDQTLSEHD-PQKPLEEEDESSRERLKRHRMAVAGHVW 60

Query: 61  IPDKWGKEEFLKDWIDGSAFEASLFPSGIMLARQALAREAK 97
           IPDKWGKEEFLKDWIDGSAFEASLF SGI+ AR ALAR+AK
Sbjct: 61  IPDKWGKEEFLKDWIDGSAFEASLFHSGIVSARCALARDAK 100

BLAST of Carg10479 vs. NCBI nr
Match: XP_023518112.1 (protein BIC1-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 124.0 bits (310), Expect = 3.6e-25
Identity = 63/96 (65.62%), Postives = 73/96 (76.04%), Query Frame = 0

Query: 1  MTLPIKPNSPLSPHLQHSDQTTHHHDLHTSSTVPSDDTPRERLKRHRVAVAGHVWIPDKW 60
          +T P+KP SPL P  Q SDQ +    L     + +++   ERLKRHRVAVAG VWIP+KW
Sbjct: 4  LTSPLKPTSPLLPDNQESDQKSDDQKL-----LAAEENGLERLKRHRVAVAGQVWIPEKW 63

Query: 61 GKEEFLKDWIDGSAFEASLFPSGIMLARQALAREAK 97
          GKEE LKDWIDGSAFEASLFPSGI+ AR+ALAREAK
Sbjct: 64 GKEELLKDWIDGSAFEASLFPSGIVSARRALAREAK 94

BLAST of Carg10479 vs. NCBI nr
Match: XP_022972606.1 (protein BIC1-like [Cucurbita maxima])

HSP 1 Score: 123.6 bits (309), Expect = 4.7e-25
Identity = 63/96 (65.62%), Postives = 73/96 (76.04%), Query Frame = 0

Query: 1  MTLPIKPNSPLSPHLQHSDQTTHHHDLHTSSTVPSDDTPRERLKRHRVAVAGHVWIPDKW 60
          +T P+KP SPL P  Q SDQ +    L     + +++   ERLKRHRVAVAG VWIP+KW
Sbjct: 4  LTSPLKPTSPLLPDNQESDQKSDDQKL-----LAAEENGLERLKRHRVAVAGQVWIPEKW 63

Query: 61 GKEEFLKDWIDGSAFEASLFPSGIMLARQALAREAK 97
          GKEE LKDWIDGSAFEASLFPSGI+ AR+ALAREAK
Sbjct: 64 GKEELLKDWIDGSAFEASLFPSGIVPARRALAREAK 94

BLAST of Carg10479 vs. NCBI nr
Match: XP_022962648.1 (protein BIC1-like [Cucurbita moschata])

HSP 1 Score: 122.1 bits (305), Expect = 1.4e-24
Identity = 74/125 (59.20%), Postives = 83/125 (66.40%), Query Frame = 0

Query: 4   PIKPNSPLSPHLQHSDQTTHHHDLHTSSTVPSDDTPRERLKRHRVAVAGHVWIPDKWGKE 63
           P+KP SPL P  Q SDQ +    L     +  ++   ERLKRHRVAVAG VWIP+KWGKE
Sbjct: 7   PLKPTSPLLPDNQESDQKSDDQKL-----LAPEENGLERLKRHRVAVAGQVWIPEKWGKE 66

Query: 64  EFLKDWIDGSAFEASLFPSGIMLARQALAREAKXXXXXXXXXXXXXXXXXXXXXXXGDLR 123
           E LKDWIDGSAFEASLFPSGI+ AR+ALAREAK             XXXXXX    G LR
Sbjct: 67  ELLKDWIDGSAFEASLFPSGIVSARRALAREAK--------RSSPNXXXXXXSATAGSLR 118

Query: 124 LLNGC 129
           +LN C
Sbjct: 127 ILNSC 118

BLAST of Carg10479 vs. NCBI nr
Match: ONH96167.1 (hypothetical protein PRUPE_7G110700 [Prunus persica])

HSP 1 Score: 99.8 bits (247), Expect = 7.3e-18
Identity = 46/69 (66.67%), Postives = 53/69 (76.81%), Query Frame = 0

Query: 28  HTSSTVPSDDTPRERLKRHRVAVAGHVWIPDKWGKEEFLKDWIDGSAFEASLFPSGIMLA 87
           H  S V  +D+ RERLK+HRV VAG VWIPD WG+EE LKDW+D SAF+ASLFPSGIM A
Sbjct: 80  HEPSNVADEDSGRERLKKHRVEVAGQVWIPDIWGQEELLKDWMDCSAFDASLFPSGIMSA 139

Query: 88  RQALAREAK 97
           R AL  E +
Sbjct: 140 RSALIEEGR 148

BLAST of Carg10479 vs. TAIR10
Match: AT3G52740.1 (unknown protein)

HSP 1 Score: 82.8 bits (203), Expect = 1.7e-16
Identity = 37/60 (61.67%), Postives = 44/60 (73.33%), Query Frame = 0

Query: 37  DTPRERLKRHRVAVAGHVWIPDKWGKEEFLKDWIDGSAFEASLFPSGIMLARQALAREAK 96
           DT RERLK+HR  +AG VWIP+ WG+EE LKDWID S F+  L P+GI  AR AL  EA+
Sbjct: 64  DTGRERLKKHRREIAGRVWIPEIWGQEELLKDWIDCSTFDTCLVPAGISSARTALVEEAR 123

BLAST of Carg10479 vs. TAIR10
Match: AT3G44450.1 (unknown protein)

HSP 1 Score: 64.3 bits (155), Expect = 6.2e-11
Identity = 41/94 (43.62%), Postives = 51/94 (54.26%), Query Frame = 0

Query: 3  LPIKPNSPLSPHLQHSDQT-THHHDLHTSSTVPSDDTPRERLKRHRVAVAGHVWIPDKWG 62
          LP +   P+SP   H  Q  T        +TV S    R+RLKRHR  VAG V IPD WG
Sbjct: 6  LPEETKEPISPGSSHRKQNKTGTKTCFPETTVLSG---RDRLKRHREEVAGKVPIPDSWG 65

Query: 63 KEEFLKDWIDGSAFEASLFPSGIMLARQALAREA 96
          KE  L  W+D S F+A+   S I+ AR AL  ++
Sbjct: 66 KEGLLMGWMDFSTFDAAFTSSQIVSARAALMADS 96

BLAST of Carg10479 vs. Swiss-Prot
Match: sp|Q9LXJ1|BIC1_ARATH (Protein BIC1 OS=Arabidopsis thaliana OX=3702 GN=BIC1 PE=1 SV=1)

HSP 1 Score: 82.8 bits (203), Expect = 3.0e-15
Identity = 37/60 (61.67%), Postives = 44/60 (73.33%), Query Frame = 0

Query: 37  DTPRERLKRHRVAVAGHVWIPDKWGKEEFLKDWIDGSAFEASLFPSGIMLARQALAREAK 96
           DT RERLK+HR  +AG VWIP+ WG+EE LKDWID S F+  L P+GI  AR AL  EA+
Sbjct: 64  DTGRERLKKHRREIAGRVWIPEIWGQEELLKDWIDCSTFDTCLVPAGISSARTALVEEAR 123

BLAST of Carg10479 vs. Swiss-Prot
Match: sp|Q9M280|BIC2_ARATH (Protein BIC2 OS=Arabidopsis thaliana OX=3702 GN=BIC2 PE=4 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 1.1e-09
Identity = 41/94 (43.62%), Postives = 51/94 (54.26%), Query Frame = 0

Query: 3  LPIKPNSPLSPHLQHSDQT-THHHDLHTSSTVPSDDTPRERLKRHRVAVAGHVWIPDKWG 62
          LP +   P+SP   H  Q  T        +TV S    R+RLKRHR  VAG V IPD WG
Sbjct: 6  LPEETKEPISPGSSHRKQNKTGTKTCFPETTVLSG---RDRLKRHREEVAGKVPIPDSWG 65

Query: 63 KEEFLKDWIDGSAFEASLFPSGIMLARQALAREA 96
          KE  L  W+D S F+A+   S I+ AR AL  ++
Sbjct: 66 KEGLLMGWMDFSTFDAAFTSSQIVSARAALMADS 96

BLAST of Carg10479 vs. TrEMBL
Match: tr|A0A0A0KFC4|A0A0A0KFC4_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G452640 PE=4 SV=1)

HSP 1 Score: 127.5 bits (319), Expect = 2.2e-26
Identity = 70/101 (69.31%), Postives = 75/101 (74.26%), Query Frame = 0

Query: 1   MTLPI-KPNS----PLSPHLQHSDQTTHHHDLHTSSTVPSDDTPRERLKRHRVAVAGHVW 60
           MTLP   PNS    P  PHLQ SDQT   HD         D++ RERLKRHR+AVAGHVW
Sbjct: 1   MTLPSPNPNSSLFLPHHPHLQESDQTLSEHD-PQKPLEEEDESSRERLKRHRMAVAGHVW 60

Query: 61  IPDKWGKEEFLKDWIDGSAFEASLFPSGIMLARQALAREAK 97
           IPDKWGKEEFLKDWIDGSAFEASLF SGI+ AR ALAR+AK
Sbjct: 61  IPDKWGKEEFLKDWIDGSAFEASLFHSGIVSARCALARDAK 100

BLAST of Carg10479 vs. TrEMBL
Match: tr|M5VRF4|M5VRF4_PRUPE (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_7G110700 PE=4 SV=1)

HSP 1 Score: 99.8 bits (247), Expect = 4.9e-18
Identity = 46/69 (66.67%), Postives = 53/69 (76.81%), Query Frame = 0

Query: 28  HTSSTVPSDDTPRERLKRHRVAVAGHVWIPDKWGKEEFLKDWIDGSAFEASLFPSGIMLA 87
           H  S V  +D+ RERLK+HRV VAG VWIPD WG+EE LKDW+D SAF+ASLFPSGIM A
Sbjct: 80  HEPSNVADEDSGRERLKKHRVEVAGQVWIPDIWGQEELLKDWMDCSAFDASLFPSGIMSA 139

Query: 88  RQALAREAK 97
           R AL  E +
Sbjct: 140 RSALIEEGR 148

BLAST of Carg10479 vs. TrEMBL
Match: tr|A0A251NA11|A0A251NA11_PRUPE (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_7G110700 PE=4 SV=1)

HSP 1 Score: 99.8 bits (247), Expect = 4.9e-18
Identity = 46/69 (66.67%), Postives = 53/69 (76.81%), Query Frame = 0

Query: 28  HTSSTVPSDDTPRERLKRHRVAVAGHVWIPDKWGKEEFLKDWIDGSAFEASLFPSGIMLA 87
           H  S V  +D+ RERLK+HRV VAG VWIPD WG+EE LKDW+D SAF+ASLFPSGIM A
Sbjct: 80  HEPSNVADEDSGRERLKKHRVEVAGQVWIPDIWGQEELLKDWMDCSAFDASLFPSGIMSA 139

Query: 88  RQALAREAK 97
           R AL  E +
Sbjct: 140 RSALIEEGR 148

BLAST of Carg10479 vs. TrEMBL
Match: tr|A0A251NA19|A0A251NA19_PRUPE (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_7G110700 PE=4 SV=1)

HSP 1 Score: 99.8 bits (247), Expect = 4.9e-18
Identity = 46/69 (66.67%), Postives = 53/69 (76.81%), Query Frame = 0

Query: 28  HTSSTVPSDDTPRERLKRHRVAVAGHVWIPDKWGKEEFLKDWIDGSAFEASLFPSGIMLA 87
           H  S V  +D+ RERLK+HRV VAG VWIPD WG+EE LKDW+D SAF+ASLFPSGIM A
Sbjct: 80  HEPSNVADEDSGRERLKKHRVEVAGQVWIPDIWGQEELLKDWMDCSAFDASLFPSGIMSA 139

Query: 88  RQALAREAK 97
           R AL  E +
Sbjct: 140 RSALIEEGR 148

BLAST of Carg10479 vs. TrEMBL
Match: tr|A0A2I4HGB8|A0A2I4HGB8_9ROSI (uncharacterized protein LOC109017364 OS=Juglans regia OX=51240 GN=LOC109017364 PE=4 SV=1)

HSP 1 Score: 96.7 bits (239), Expect = 4.1e-17
Identity = 45/69 (65.22%), Postives = 53/69 (76.81%), Query Frame = 0

Query: 28  HTSSTVPSDDTPRERLKRHRVAVAGHVWIPDKWGKEEFLKDWIDGSAFEASLFPSGIMLA 87
           H +S V ++D+ RERLKRHRV VAG VWIPD WG+EE LKDWID SAF+ SL P+GIM A
Sbjct: 93  HVASDVMTEDSGRERLKRHRVEVAGRVWIPDIWGQEELLKDWIDCSAFDTSLVPAGIMQA 152

Query: 88  RQALAREAK 97
           R AL  E +
Sbjct: 153 RAALVDEGR 161

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_011657706.13.3e-2669.31PREDICTED: uncharacterized protein LOC105435886 [Cucumis sativus] >KGN48263.1 hy... [more]
XP_023518112.13.6e-2565.63protein BIC1-like [Cucurbita pepo subsp. pepo][more]
XP_022972606.14.7e-2565.63protein BIC1-like [Cucurbita maxima][more]
XP_022962648.11.4e-2459.20protein BIC1-like [Cucurbita moschata][more]
ONH96167.17.3e-1866.67hypothetical protein PRUPE_7G110700 [Prunus persica][more]
Match NameE-valueIdentityDescription
AT3G52740.11.7e-1661.67unknown protein[more]
AT3G44450.16.2e-1143.62unknown protein[more]
Match NameE-valueIdentityDescription
sp|Q9LXJ1|BIC1_ARATH3.0e-1561.67Protein BIC1 OS=Arabidopsis thaliana OX=3702 GN=BIC1 PE=1 SV=1[more]
sp|Q9M280|BIC2_ARATH1.1e-0943.62Protein BIC2 OS=Arabidopsis thaliana OX=3702 GN=BIC2 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
tr|A0A0A0KFC4|A0A0A0KFC4_CUCSA2.2e-2669.31Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G452640 PE=4 SV=1[more]
tr|M5VRF4|M5VRF4_PRUPE4.9e-1866.67Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_7G110700 PE=4 SV=1[more]
tr|A0A251NA11|A0A251NA11_PRUPE4.9e-1866.67Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_7G110700 PE=4 SV=1[more]
tr|A0A251NA19|A0A251NA19_PRUPE4.9e-1866.67Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_7G110700 PE=4 SV=1[more]
tr|A0A2I4HGB8|A0A2I4HGB8_9ROSI4.1e-1765.22uncharacterized protein LOC109017364 OS=Juglans regia OX=51240 GN=LOC109017364 P... [more]
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg10479-RACarg10479-RAmRNA


Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 95..117
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 94..120
NoneNo IPR availablePANTHERPTHR34207FAMILY NOT NAMEDcoord: 20..101

The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Carg10479Cla017694Watermelon (97103) v1carwmB0225
Carg10479Csa3G776900Cucumber (Chinese Long) v2carcuB0265
Carg10479Csa6G452640Cucumber (Chinese Long) v2carcuB0267
Carg10479MELO3C024545Melon (DHL92) v3.5.1carmeB0242
Carg10479MELO3C009470Melon (DHL92) v3.5.1carmeB0241
Carg10479ClCG02G022130Watermelon (Charleston Gray)carwcgB0231
Carg10479ClCG10G019000Watermelon (Charleston Gray)carwcgB0229
Carg10479ClCG04G010040Watermelon (Charleston Gray)carwcgB0232
Carg10479CSPI03G34890Wild cucumber (PI 183967)carcpiB0269
Carg10479CSPI06G25490Wild cucumber (PI 183967)carcpiB0271
Carg10479Cucsa.241120Cucumber (Gy14) v1carcgyB0282
Carg10479Cucsa.083380Cucumber (Gy14) v1carcgyB0279
Carg10479CmaCh06G004700Cucurbita maxima (Rimu)carcmaB0334
Carg10479CmoCh06G004720Cucurbita moschata (Rifu)carcmoB0337
Carg10479CmoCh07G008840Cucurbita moschata (Rifu)carcmoB0338
Carg10479CmoCh14G003000Cucurbita moschata (Rifu)carcmoB0334
Carg10479Lsi01G012220Bottle gourd (USVL1VR-Ls)carlsiB214
Carg10479Lsi03G018960Bottle gourd (USVL1VR-Ls)carlsiB215
Carg10479Cp4.1LG03g00920Cucurbita pepo (Zucchini)carcpeB0339
Carg10479Cp4.1LG19g05050Cucurbita pepo (Zucchini)carcpeB0338
Carg10479Cp4.1LG08g10230Cucurbita pepo (Zucchini)carcpeB0340
Carg10479MELO3C009470.2Melon (DHL92) v3.6.1carmedB0249
Carg10479MELO3C024545.2Melon (DHL92) v3.6.1carmedB0250
Carg10479CsaV3_6G040680Cucumber (Chinese Long) v3carcucB0270
Carg10479CsaV3_3G037250Cucumber (Chinese Long) v3carcucB0269
Carg10479Cla97C10G202020Watermelon (97103) v2carwmbB0240
Carg10479Cla97C04G076880Watermelon (97103) v2carwmbB0244
Carg10479Bhi11G001913Wax gourdcarwgoB0301
Carg10479Bhi03G001421Wax gourdcarwgoB0305
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
Carg10479Carg14533Silver-seed gourdcarcarB172
Carg10479Carg03674Silver-seed gourdcarcarB276
Carg10479Carg05364Silver-seed gourdcarcarB280