Carg10284 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg10284
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	snurportin-1
Location	Cucurbita_argyrosperma_scaffold_047 : 234215 .. 235284 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

AAGCGCCGCGACGCTCAGCAACAAGCCCGCTCCTTAGCCTCCACGCTCCTCTCCCTCTCATCCACATTTAACGAGCCTATTACCTCTGAGCCGGTGCTGGAAATTGAACTAAACGAACTCGAATCCGAAACAGAATGATTGCCGGAGCTACTACCGCAGGATGAGTTTAACGAGCCTGCTCCGATAGATCTCGATGTGCTCCAGGCTTTGAAGCTCAAAGGTTCACAGGCTCGTAAGTGGTTTTCGAAGCAACTGTTGCTTCCTGAGTGCATGATAGATGTTCCTGATCGGCTTGGCGAAGACTGGTTATAATTCCTTCTCATCTCTTTGTTACTAATGTTAAGTTATCTATTTACGCTTATGTTTTCTTCAACTACTACTTCGGCTTGGATCTTGTTTCTATTTACGCGATGCCTCATCTGATCATCGCGGCTTTGGTATTGGTTTTATGAGCACTGTTTTTTGCTCATAACTGCATGTTCGCATTCAAATTCAAATCTCTCCGGTTGTTTCATTCTCACTCACTTCCGGTGCTTGGCCAATTGTATACCGAGCTTAATTTTGATTGCTCATTTTTGTTTGTTTGTTGGAATGTTTGATCCTCCTCACCATAGAGCTTTCTGGTTGCACAAATGTCTGATTCTTACATCAACAAGGATTCAGAAAATGAAAAGGAAAAAGAGAGAGAATCTTAATTTCTCAATGAATTTGATTCGAATGATCGAAGCTGAGGTTGACGTTTCTGTTGTGCTTTGGATGTTTGTAGATGCGTACTTGCAAGGCCTTCCGGTAAACGATGCTTTGTAGTTTCTTCAAACGGAACAACTATCAGCAGGCTACGAAATGGATCAATTCTGCATCGTTTTCCTTCTGCTCTACCTAACGGAGCAAAGACAAAAAAATGCCTCTGGATCCGGTCAAACATATTCTATTCTATATTGGATATTTCATGAAGTAAGTTTCTCGTAATTCCTATGCCATTTCATAGTCCACGTTTTTTTATTGATTAGTAAAGGTTTGAATGTCCTGTAGATGGACAAACGTACTACGTCATTGATATGATTTGTTGA

mRNA sequence

AAGCGCCGCGACGCTCAGCAACAAGCCCGCTCCTTAGCCTCCACGCTCCTCTCCCTCTCATCCACATTTAACGAGCCTATTACCTCTGAGCCGGATGAGTTTAACGAGCCTGCTCCGATAGATCTCGATGTGCTCCAGGCTTTGAAGCTCAAAGGTTCACAGGCTCGTAAGTGGTTTTCGAAGCAACTGTTGCTTCCTGAATGCGTACTTGCAAGGCCTTCCGGTAAACGATGCTTTGTAGTTTCTTCAAACGGAACAACTATCAGCAGGCTACGAAATGGATCAATTCTGCATCGTTTTCCTTCTGCTCTACCTAACGGAGCAAAGACAAAAAAATGCCTCTGGATCCGGTTTGAATGTCCTGTAGATGGACAAACGTACTACGTCATTGATATGATTTGTTGA

Coding sequence (CDS)

AAGCGCCGCGACGCTCAGCAACAAGCCCGCTCCTTAGCCTCCACGCTCCTCTCCCTCTCATCCACATTTAACGAGCCTATTACCTCTGAGCCGGATGAGTTTAACGAGCCTGCTCCGATAGATCTCGATGTGCTCCAGGCTTTGAAGCTCAAAGGTTCACAGGCTCGTAAGTGGTTTTCGAAGCAACTGTTGCTTCCTGAATGCGTACTTGCAAGGCCTTCCGGTAAACGATGCTTTGTAGTTTCTTCAAACGGAACAACTATCAGCAGGCTACGAAATGGATCAATTCTGCATCGTTTTCCTTCTGCTCTACCTAACGGAGCAAAGACAAAAAAATGCCTCTGGATCCGGTTTGAATGTCCTGTAGATGGACAAACGTACTACGTCATTGATATGATTTGTTGA

Protein sequence

KRRDAQQQARSLASTLLSLSSTFNEPITSEPDEFNEPAPIDLDVLQALKLKGSQARKWFSKQLLLPECVLARPSGKRCFVVSSNGTTISRLRNGSILHRFPSALPNGAKTKKCLWIRFECPVDGQTYYVIDMIC

Homology

[Close]

BLAST of Carg10284 vs. NCBI nr
Match: XP_016903207.1 (PREDICTED: snurportin-1 [Cucumis melo])

HSP 1 Score: 165.6 bits (418), Expect = 1.1e-37
Identity = 102/168 (60.71%), Postives = 106/168 (63.10%), Query Frame = 0


Query: 9   ARSLASTLLSLSSTFNEPITSEP----------------------DEFNEPAPIDLDVLQ 68
           ARSLASTLLSLSS+FNEP TSEP                       EFNEPA  +LDV Q
Sbjct: 40  ARSLASTLLSLSSSFNEPSTSEPVLEIELNELESETECSTEILAEREFNEPALKELDVRQ 99

Query: 69  ALKLKGSQARKWFSKQLLLPE-------------CVLARPSGKRCFVVSSNGTTISRLRN 128
           A KLK S ARKWFSKQLLLPE              V ARPSGKRCFVVSSNGTTISRLRN
Sbjct: 100 ASKLKSSDARKWFSKQLLLPEWMIDVPDRLTDDWYVFARPSGKRCFVVSSNGTTISRLRN 159

Query: 129 GSILHRFPSALPNGAKTKKC-----LWIRFEC--PVDGQTYYVIDMIC 135
           GSILHRFPSALPNGAKTK        +   +C      QTYYVIDMIC
Sbjct: 160 GSILHRFPSALPNGAKTKNASGSGQTYSILDCIFHEPDQTYYVIDMIC 207

[Close]

BLAST of Carg10284 vs. NCBI nr
Match: XP_004138050.1 (PREDICTED: snurportin-1 [Cucumis sativus])

HSP 1 Score: 165.2 bits (417), Expect = 1.5e-37
Identity = 101/168 (60.12%), Postives = 108/168 (64.29%), Query Frame = 0


Query: 9   ARSLASTLLSLSSTFNEPITSEP----------------------DEFNEPAPIDLDVLQ 68
           ARSLASTLLSLSS+F+EP TSEP                       EFNEPA  +LDV Q
Sbjct: 40  ARSLASTLLSLSSSFDEPSTSEPVLEIELNELESGTECSLEILSEREFNEPALKELDVRQ 99

Query: 69  ALKLKGSQARKWFSKQLLLPE-------------CVLARPSGKRCFVVSSNGTTISRLRN 128
           A KLK S+ARKWFSKQLLLPE              V ARPSGKRCFVVSSNGTTISRLRN
Sbjct: 100 ASKLKSSEARKWFSKQLLLPEWMIDVPDRLSDEWYVFARPSGKRCFVVSSNGTTISRLRN 159

Query: 129 GSILHRFPSALPNGAKTKKC-----LWIRFEC--PVDGQTYYVIDMIC 135
           GSILHRFPS+LPNGAKTKK       +   +C      QTYYVIDMIC
Sbjct: 160 GSILHRFPSSLPNGAKTKKASGSGQTYSILDCIFHETDQTYYVIDMIC 207

[Close]

BLAST of Carg10284 vs. NCBI nr
Match: KGN63485.1 (hypothetical protein Csa_1G002050 [Cucumis sativus])

HSP 1 Score: 165.2 bits (417), Expect = 1.5e-37
Identity = 101/168 (60.12%), Postives = 108/168 (64.29%), Query Frame = 0


Query: 9   ARSLASTLLSLSSTFNEPITSEP----------------------DEFNEPAPIDLDVLQ 68
           ARSLASTLLSLSS+F+EP TSEP                       EFNEPA  +LDV Q
Sbjct: 76  ARSLASTLLSLSSSFDEPSTSEPVLEIELNELESGTECSLEILSEREFNEPALKELDVRQ 135

Query: 69  ALKLKGSQARKWFSKQLLLPE-------------CVLARPSGKRCFVVSSNGTTISRLRN 128
           A KLK S+ARKWFSKQLLLPE              V ARPSGKRCFVVSSNGTTISRLRN
Sbjct: 136 ASKLKSSEARKWFSKQLLLPEWMIDVPDRLSDEWYVFARPSGKRCFVVSSNGTTISRLRN 195

Query: 129 GSILHRFPSALPNGAKTKKC-----LWIRFEC--PVDGQTYYVIDMIC 135
           GSILHRFPS+LPNGAKTKK       +   +C      QTYYVIDMIC
Sbjct: 196 GSILHRFPSSLPNGAKTKKASGSGQTYSILDCIFHETDQTYYVIDMIC 243

[Close]

BLAST of Carg10284 vs. NCBI nr
Match: XP_023001378.1 (snurportin-1 [Cucurbita maxima])

HSP 1 Score: 162.2 bits (409), Expect = 1.3e-36
Identity = 100/180 (55.56%), Postives = 109/180 (60.56%), Query Frame = 0


Query: 2   RRDAQQQARSLASTLLSLSSTFNEPITSE----------------------PDEFNEPAP 61
           R DA   ARSLASTLLSLSSTFNEP TSE                        EFNEP+ 
Sbjct: 33  RXDAXXXARSLASTLLSLSSTFNEPSTSESVLEVELNELDSETECSPVLRSQSEFNEPSL 92

Query: 62  IDLDVLQALKLKGSQARKWFSKQLLLPE-------------CVLARPSGKRCFVVSSNGT 121
            + DV QA KLKGS+ARKWFS+QLLLPE              V ARPSGKRCFVVSSNGT
Sbjct: 93  KEFDVRQASKLKGSEARKWFSRQLLLPEWMIDVPDRLSEDWYVFARPSGKRCFVVSSNGT 152

Query: 122 TISRLRNGSILHRFPSALPNGAKTK------------KCLWIRFECPVDGQTYYVIDMIC 135
           TISRLRNGSILHRFPSALPNGA+ +             C++   +     QTYYVIDMIC
Sbjct: 153 TISRLRNGSILHRFPSALPNGARRRDASGSGQSYSILDCIFHEMD-----QTYYVIDMIC 207

[Close]

BLAST of Carg10284 vs. NCBI nr
Match: XP_022135463.1 (snurportin-1 [Momordica charantia])

HSP 1 Score: 159.1 bits (401), Expect = 1.1e-35
Identity = 102/180 (56.67%), Postives = 108/180 (60.00%), Query Frame = 0


Query: 2   RRDAQQQARSLASTLLSLSSTFNEPITSEP---DEFNE-------------------PAP 61
           RRDAQQ ARSLASTLLSLSSTF+EP TSEP    E NE                      
Sbjct: 33  RRDAQQAARSLASTLLSLSSTFHEPTTSEPVLEIELNELESETEHSPELVSXXXXXXXXX 92

Query: 62  IDLDVLQALKLKGSQARKWFSKQLLLPE-------------CVLARPSGKRCFVVSSNGT 121
               V QA KLKGS+ARKWFSKQLLLPE              V ARPSGKRCFVVSSNGT
Sbjct: 93  XXXXVCQASKLKGSEARKWFSKQLLLPEWMIDVPDRLSEDWYVFARPSGKRCFVVSSNGT 152

Query: 122 TISRLRNGSILHRFPSALPNGAKTK------------KCLWIRFECPVDGQTYYVIDMIC 135
           TISRLRNGSILHRFPSALPNGAK +             C++   +     QTYYVIDMIC
Sbjct: 153 TISRLRNGSILHRFPSALPNGAKKRDVSGSGQSYSILDCIFHEMD-----QTYYVIDMIC 207

[Close]

BLAST of Carg10284 vs. TAIR10
Match: AT4G24880.1 (unknown protein)

HSP 1 Score: 128.3 bits (321), Expect = 3.7e-30
Identity = 78/162 (48.15%), Postives = 100/162 (61.73%), Query Frame = 0


Query: 2   RRDAQQQARSLASTLLSLSSTFNEPITSEPDEFNEPAP---------IDLDVLQALKLKG 61
           R DAQQ+AR+LAS+L+SL S+  +    +P+  +E  P            DV QA +L+G
Sbjct: 33  RSDAQQRARNLASSLISLQSSSPD---VDPEILSEAVPELVGTESESSSFDVRQASRLRG 92

Query: 62  SQARKWFSKQLLLPE-------------CVLARPSGKRCFVVSSNGTTISRLRNGSILHR 121
            +ARKWF+KQL+LPE              VLARP+GKRCFVVSS+GTT+SR+RNGS LH 
Sbjct: 93  PEARKWFAKQLMLPEWMIDVPDNLSQDWYVLARPAGKRCFVVSSDGTTVSRVRNGSTLHL 152

Query: 122 FPSALPNGAKTKKC-----LWIRFEC--PVDGQTYYVIDMIC 135
           FPSALP GA+ K        +   +C      QTYYVIDM+C
Sbjct: 153 FPSALPGGARKKGASGPANSYSILDCIFHESDQTYYVIDMVC 191

[Close]

BLAST of Carg10284 vs. Swiss-Prot
Match: sp|Q5ZI43|SPN1_CHICK (Snurportin-1 OS=Gallus gallus OX=9031 GN=SNUPN PE=2 SV=1)

HSP 1 Score: 51.6 bits (122), Expect = 7.8e-06
Identity = 31/101 (30.69%), Postives = 53/101 (52.48%), Query Frame = 0


Query: 52  GSQARKWFSKQLLLPE-------------CVLARPSGKRCFVVSSNGTTISRLRNGSILH 111
           G +  K ++ QL+L E              V+  P GKR  VV+S G+T +  ++G  ++
Sbjct: 93  GRRLPKRYANQLMLSEWLVDVPVDLEQEWIVVVCPVGKRALVVASRGSTAAYTKSGFCVN 152

Query: 112 RFPSALPNGAK---TKKCLWIRFECPVD--GQTYYVIDMIC 135
           RFPS LP G +     + ++   +C  +   QTYY++D++C
Sbjct: 153 RFPSLLPGGNRHNTMNEKVYCILDCIYNEAEQTYYILDVMC 193

[Close]

BLAST of Carg10284 vs. Swiss-Prot
Match: sp|O95149|SPN1_HUMAN (Snurportin-1 OS=Homo sapiens OX=9606 GN=SNUPN PE=1 SV=1)

HSP 1 Score: 48.5 bits (114), Expect = 6.6e-05
Identity = 42/151 (27.81%), Postives = 69/151 (45.70%), Query Frame = 0


Query: 1   KRRDAQQQARSLASTLLSLSSTFNEPITSEPDEFNEPAPIDLDVLQALKLKGSQARKWFS 60
           KR D    AR LA          ++    E +E N+    ++D+    KL      K ++
Sbjct: 54  KRLDYVNHARRLAE---------DDWTGMESEEENKKDDEEMDIDTVKKLP-----KHYA 113

Query: 61  KQLLLPECVLARPS-------------GKRCFVVSSNGTTISRLRNGSILHRFPSALPNG 120
            QL+L E ++  PS             GKR  +V+S G+T +  ++G  ++RF S LP G
Sbjct: 114 NQLMLSEWLIDVPSDLGQEWIVVVCPVGKRALIVASRGSTSAYTKSGYCVNRFSSLLPGG 173

Query: 121 AKTKKCL--WIRFECPVD--GQTYYVIDMIC 135
            +       +   +C  +   QTYYV+D++C
Sbjct: 174 NRRNSTAKDYTILDCIYNEVNQTYYVLDVMC 190

[Close]

BLAST of Carg10284 vs. Swiss-Prot
Match: sp|Q80W37|SPN1_MOUSE (Snurportin-1 OS=Mus musculus OX=10090 GN=Snupn PE=2 SV=1)

HSP 1 Score: 48.1 bits (113), Expect = 8.7e-05
Identity = 34/121 (28.10%), Postives = 59/121 (48.76%), Query Frame = 0


Query: 32  DEFNEPAPIDLDVLQALKLKGSQARKWFSKQLLLPECVLARPS-------------GKRC 91
           +E N+    ++D+  + KL      K ++ QL+L E ++  PS             GKR 
Sbjct: 77  EEENKKDEEEMDIDPSKKLP-----KRYANQLMLSEWLIDVPSDLGQEWIVVVCPVGKRA 136

Query: 92  FVVSSNGTTISRLRNGSILHRFPSALPNGAKTKKCL---WIRFECPVD--GQTYYVIDMI 135
            +V+S G+T +  ++G  ++RF S LP G +        +   +C      QTYYV+D++
Sbjct: 137 LIVASRGSTSAYTKSGYCVNRFSSLLPGGNRRNSTTAKDYTILDCIYSEVNQTYYVLDVM 192

[Close]

BLAST of Carg10284 vs. Swiss-Prot
Match: sp|Q68FP5|SPN1_RAT (Snurportin-1 OS=Rattus norvegicus OX=10116 GN=Snupn PE=2 SV=1)

HSP 1 Score: 45.8 bits (107), Expect = 4.3e-04
Identity = 41/152 (26.97%), Postives = 66/152 (43.42%), Query Frame = 0


Query: 1   KRRDAQQQARSLASTLLSLSSTFNEPITSEPDEFNEPAPIDLDVLQALKLKGSQARKWFS 60
           KR D    AR LA         +    + E +       +DLD ++ L        K ++
Sbjct: 54  KRLDYVNHARRLA------EDDWTGMESGEEEXXXXXXEMDLDPVKKLP-------KRYA 113

Query: 61  KQLLLPECVLARPS-------------GKRCFVVSSNGTTISRLRNGSILHRFPSALPNG 120
            QL+L E ++  PS             GKR  +V+S G+T +  ++G  ++RF S LP G
Sbjct: 114 NQLMLSEWLIDVPSDLGQEWIVVVCPVGKRALIVASRGSTSAYTKSGYCVNRFSSLLPGG 173

Query: 121 AKTKKCL---WIRFECPVD--GQTYYVIDMIC 135
            +        +   +C      QTYYV+D++C
Sbjct: 174 NRRNSTTAKDYTILDCIYSEVNQTYYVLDVMC 192

[Close]

BLAST of Carg10284 vs. TrEMBL
Match: tr|A0A1S4E4Q9|A0A1S4E4Q9_CUCME (snurportin-1 OS=Cucumis melo OX=3656 GN=LOC103502323 PE=4 SV=1)

HSP 1 Score: 165.6 bits (418), Expect = 7.5e-38
Identity = 102/168 (60.71%), Postives = 106/168 (63.10%), Query Frame = 0


Query: 9   ARSLASTLLSLSSTFNEPITSEP----------------------DEFNEPAPIDLDVLQ 68
           ARSLASTLLSLSS+FNEP TSEP                       EFNEPA  +LDV Q
Sbjct: 40  ARSLASTLLSLSSSFNEPSTSEPVLEIELNELESETECSTEILAEREFNEPALKELDVRQ 99

Query: 69  ALKLKGSQARKWFSKQLLLPE-------------CVLARPSGKRCFVVSSNGTTISRLRN 128
           A KLK S ARKWFSKQLLLPE              V ARPSGKRCFVVSSNGTTISRLRN
Sbjct: 100 ASKLKSSDARKWFSKQLLLPEWMIDVPDRLTDDWYVFARPSGKRCFVVSSNGTTISRLRN 159

Query: 129 GSILHRFPSALPNGAKTKKC-----LWIRFEC--PVDGQTYYVIDMIC 135
           GSILHRFPSALPNGAKTK        +   +C      QTYYVIDMIC
Sbjct: 160 GSILHRFPSALPNGAKTKNASGSGQTYSILDCIFHEPDQTYYVIDMIC 207

[Close]

BLAST of Carg10284 vs. TrEMBL
Match: tr|A0A0A0LNL4|A0A0A0LNL4_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G002050 PE=4 SV=1)

HSP 1 Score: 165.2 bits (417), Expect = 9.9e-38
Identity = 101/168 (60.12%), Postives = 108/168 (64.29%), Query Frame = 0


Query: 9   ARSLASTLLSLSSTFNEPITSEP----------------------DEFNEPAPIDLDVLQ 68
           ARSLASTLLSLSS+F+EP TSEP                       EFNEPA  +LDV Q
Sbjct: 76  ARSLASTLLSLSSSFDEPSTSEPVLEIELNELESGTECSLEILSEREFNEPALKELDVRQ 135

Query: 69  ALKLKGSQARKWFSKQLLLPE-------------CVLARPSGKRCFVVSSNGTTISRLRN 128
           A KLK S+ARKWFSKQLLLPE              V ARPSGKRCFVVSSNGTTISRLRN
Sbjct: 136 ASKLKSSEARKWFSKQLLLPEWMIDVPDRLSDEWYVFARPSGKRCFVVSSNGTTISRLRN 195

Query: 129 GSILHRFPSALPNGAKTKKC-----LWIRFEC--PVDGQTYYVIDMIC 135
           GSILHRFPS+LPNGAKTKK       +   +C      QTYYVIDMIC
Sbjct: 196 GSILHRFPSSLPNGAKTKKASGSGQTYSILDCIFHETDQTYYVIDMIC 243

[Close]

BLAST of Carg10284 vs. TrEMBL
Match: tr|D7SGY3|D7SGY3_VITVI (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_17s0000g01420 PE=4 SV=1)

HSP 1 Score: 148.3 bits (373), Expect = 1.2e-32
Identity = 87/161 (54.04%), Postives = 108/161 (67.08%), Query Frame = 0


Query: 2   RRDAQQQARSLASTLLSLSSTFNEPITSEPDEFNEPA--------PIDLDVLQALKLKGS 61
           RRDAQ  AR LAST++SL +   EPI SEP+  +EP+        P D+DV QA KLKG 
Sbjct: 33  RRDAQHHARCLASTVVSLQAPNPEPI-SEPEIADEPSVESESQSIPRDIDVRQASKLKGY 92

Query: 62  QARKWFSKQLLLPE-------------CVLARPSGKRCFVVSSNGTTISRLRNGSILHRF 121
           +AR+WF++QL+LPE              VLARP+GKRCFVVSS+GTT+SRLRNGS+LH F
Sbjct: 93  EARRWFARQLMLPEWMIDVPDRLSHDWYVLARPTGKRCFVVSSDGTTVSRLRNGSVLHHF 152

Query: 122 PSALPNGAKTKKCLW-IRFECPVD------GQTYYVIDMIC 135
           PSALPNGA+T+      +  C +D       QTYYVIDM+C
Sbjct: 153 PSALPNGARTRDISGSAQSYCILDCIFHELDQTYYVIDMVC 192

[Close]

BLAST of Carg10284 vs. TrEMBL
Match: tr|A0A1U7ZD98|A0A1U7ZD98_NELNU (snurportin-1 OS=Nelumbo nucifera OX=4432 GN=LOC104592896 PE=4 SV=1)

HSP 1 Score: 146.7 bits (369), Expect = 3.6e-32
Identity = 87/163 (53.37%), Postives = 105/163 (64.42%), Query Frame = 0


Query: 2   RRDAQQQARSLASTLLSLSSTFNEP----------ITSEPDEFNEPAPIDLDVLQALKLK 61
           RRD+Q QAR LAS++LSL +   EP          + SE +  ++    DLD+LQA KLK
Sbjct: 33  RRDSQHQARHLASSVLSLQNQNTEPEAELGPESETVESEQETLSK----DLDILQASKLK 92

Query: 62  GSQARKWFSKQLLLPE-------------CVLARPSGKRCFVVSSNGTTISRLRNGSILH 121
           GS+ARKWF++QL+LPE              V ARPSGKRCFVVSSNGTT+SRLRNGSILH
Sbjct: 93  GSEARKWFARQLMLPEWMIDVPPRLNTDWYVFARPSGKRCFVVSSNGTTVSRLRNGSILH 152

Query: 122 RFPSALPNGAKTKKCLWIRFE-CPVD------GQTYYVIDMIC 135
            FPSALPNGA+T+         C +D       QTYYVIDM+C
Sbjct: 153 HFPSALPNGARTRDISGPAHSFCILDCIFHEPDQTYYVIDMVC 191

[Close]

BLAST of Carg10284 vs. TrEMBL
Match: tr|A0A1J7G9P8|A0A1J7G9P8_LUPAN (Uncharacterized protein OS=Lupinus angustifolius OX=3871 GN=TanjilG_14612 PE=4 SV=1)

HSP 1 Score: 146.0 bits (367), Expect = 6.2e-32
Identity = 92/160 (57.50%), Postives = 104/160 (65.00%), Query Frame = 0


Query: 2   RRDAQQQARSLASTLLSLSSTFN--EPITSE----PDEFNEPAPIDLDVLQALKLKGSQA 61
           RRDAQ  AR LAST  SL S     EP  S+    PD   EP+  DLDV++A KLKG++A
Sbjct: 33  RRDAQHHARFLASTAFSLPSQTPELEPSLSQPEHVPDSQPEPSFKDLDVVEASKLKGAEA 92

Query: 62  RKWFSKQLLLPE-------------CVLARPSGKRCFVVSSNGTTISRLRNGSILHRFPS 121
           RKWF+KQL+LPE              V ARPSGKRCFVVS NGTTISRL+NGSILHRFPS
Sbjct: 93  RKWFAKQLMLPEWMIDIPDKLAIDWFVFARPSGKRCFVVSCNGTTISRLKNGSILHRFPS 152

Query: 122 ALPNGAKTKKC-----LWIRFEC---PVDGQTYYVIDMIC 135
           ALPNGA+ K        +   +C    VD QTYYVIDMIC
Sbjct: 153 ALPNGARRKDASGSSQSYSILDCIFHEVD-QTYYVIDMIC 191

The following BLAST results are available for this feature:

BLAST of Carg10284 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_016903207.1	1.1e-37	60.71	PREDICTED: snurportin-1 [Cucumis melo]	[more]
XP_004138050.1	1.5e-37	60.12	PREDICTED: snurportin-1 [Cucumis sativus]	[more]
KGN63485.1	1.5e-37	60.12	hypothetical protein Csa_1G002050 [Cucumis sativus]	[more]
XP_023001378.1	1.3e-36	55.56	snurportin-1 [Cucurbita maxima]	[more]
XP_022135463.1	1.1e-35	56.67	snurportin-1 [Momordica charantia]	[more]

BLAST of Carg10284 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G24880.1	3.7e-30	48.15	unknown protein	[more]

BLAST of Carg10284 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q5ZI43\|SPN1_CHICK	7.8e-06	30.69	Snurportin-1 OS=Gallus gallus OX=9031 GN=SNUPN PE=2 SV=1	[more]
sp\|O95149\|SPN1_HUMAN	6.6e-05	27.81	Snurportin-1 OS=Homo sapiens OX=9606 GN=SNUPN PE=1 SV=1	[more]
sp\|Q80W37\|SPN1_MOUSE	8.7e-05	28.10	Snurportin-1 OS=Mus musculus OX=10090 GN=Snupn PE=2 SV=1	[more]
sp\|Q68FP5\|SPN1_RAT	4.3e-04	26.97	Snurportin-1 OS=Rattus norvegicus OX=10116 GN=Snupn PE=2 SV=1	[more]

BLAST of Carg10284 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S4E4Q9\|A0A1S4E4Q9_CUCME	7.5e-38	60.71	snurportin-1 OS=Cucumis melo OX=3656 GN=LOC103502323 PE=4 SV=1	[more]
tr\|A0A0A0LNL4\|A0A0A0LNL4_CUCSA	9.9e-38	60.12	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G002050 PE=4 SV=1	[more]
tr\|D7SGY3\|D7SGY3_VITVI	1.2e-32	54.04	Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_17s0000g01420 PE=4 SV=...	[more]
tr\|A0A1U7ZD98\|A0A1U7ZD98_NELNU	3.6e-32	53.37	snurportin-1 OS=Nelumbo nucifera OX=4432 GN=LOC104592896 PE=4 SV=1	[more]
tr\|A0A1J7G9P8\|A0A1J7G9P8_LUPAN	6.2e-32	57.50	Uncharacterized protein OS=Lupinus angustifolius OX=3871 GN=TanjilG_14612 PE=4 S...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Biological Process**
Term	Definition
GO:0061015	snRNA import into nucleus

Vocabulary: **Cellular Component**
Term	Definition
GO:0005737	cytoplasm
GO:0005634	nucleus

Vocabulary: **INTERPRO**
Term	Definition
IPR017336	Snurportin-1

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0061015	snRNA import into nucleus
cellular_component	GO:0005737	cytoplasm
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg10284-RA	Carg10284-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	G3DSA:3.30.470.30		coord: 1..134 e-value: 8.6E-16 score: 59.6
IPR017336	Snurportin-1	PANTHER	PTHR13403	SNURPORTIN1 RNUT1 PROTEIN RNA, U TRANSPORTER 1	coord: 1..134

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg10284	CmaCh10G000640	Cucurbita maxima (Rimu)	carcmaB0510
Carg10284	CmoCh10G000590	Cucurbita moschata (Rifu)	carcmoB0493
Carg10284	Lsi06G016380	Bottle gourd (USVL1VR-Ls)	carlsiB331
Carg10284	Cp4.1LG18g08880	Cucurbita pepo (Zucchini)	carcpeB0508
Carg10284	Cp4.1LG04g16080	Cucurbita pepo (Zucchini)	carcpeB0514

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Carg10284	Silver-seed gourd	carcarB387
Carg10284	Silver-seed gourd	carcarB388
Carg10284	Silver-seed gourd	carcarB390
Carg10284	Silver-seed gourd	carcarB395
Carg10284	Silver-seed gourd	carcarB396
Carg10284	Cucumber (Gy14) v2	carcgybB0371
Carg10284	Cucumber (Gy14) v2	carcgybB0373
Carg10284	Cucumber (Gy14) v1	carcgyB0422
Carg10284	Cucumber (Gy14) v1	carcgyB0424
Carg10284	Cucurbita maxima (Rimu)	carcmaB0511
Carg10284	Cucurbita maxima (Rimu)	carcmaB0513
Carg10284	Cucurbita maxima (Rimu)	carcmaB0515
Carg10284	Cucurbita maxima (Rimu)	carcmaB0516
Carg10284	Cucurbita moschata (Rifu)	carcmoB0494
Carg10284	Cucurbita moschata (Rifu)	carcmoB0495
Carg10284	Cucurbita moschata (Rifu)	carcmoB0497
Carg10284	Cucurbita moschata (Rifu)	carcmoB0498
Carg10284	Cucurbita moschata (Rifu)	carcmoB0500
Carg10284	Cucurbita pepo (Zucchini)	carcpeB0507
Carg10284	Cucurbita pepo (Zucchini)	carcpeB0510
Carg10284	Cucurbita pepo (Zucchini)	carcpeB0513
Carg10284	Wild cucumber (PI 183967)	carcpiB0396
Carg10284	Wild cucumber (PI 183967)	carcpiB0398
Carg10284	Cucumber (Chinese Long) v2	carcuB0391
Carg10284	Cucumber (Chinese Long) v2	carcuB0393
Carg10284	Cucumber (Chinese Long) v3	carcucB0395
Carg10284	Cucumber (Chinese Long) v3	carcucB0397
Carg10284	Bottle gourd (USVL1VR-Ls)	carlsiB330
Carg10284	Melon (DHL92) v3.5.1	carmeB0366
Carg10284	Melon (DHL92) v3.5.1	carmeB0369
Carg10284	Melon (DHL92) v3.6.1	carmedB0372
Carg10284	Melon (DHL92) v3.6.1	carmedB0375
Carg10284	Watermelon (Charleston Gray)	carwcgB0356
Carg10284	Watermelon (Charleston Gray)	carwcgB0357
Carg10284	Watermelon (97103) v1	carwmB0354
Carg10284	Watermelon (97103) v1	carwmB0356
Carg10284	Watermelon (97103) v2	carwmbB0379
Carg10284	Watermelon (97103) v2	carwmbB0381
Carg10284	Watermelon (97103) v2	carwmbB0382
Carg10284	Wax gourd	carwgoB0445
Carg10284	Wax gourd	carwgoB0447
Carg10284	Wax gourd	carwgoB0448