Carg10220 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg10220
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	peptidoglycan-binding LysM domain-containing protein
Location	Cucurbita_argyrosperma_scaffold_039 : 1157365 .. 1157619 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTTCCTCAACATCCTGCTGCTCTGTTTTCATTTTCATGGCGCTCATGCTCCTCGCCTCTGCGCAATCCGGTCCCTGCGACGACATCTACCTCGTCAGAGAAGGCGAGTCGCTGCACTCTATCAGCGCCAAGTGCGACGATCCTTTCATAGTCGACTACAATCCGCAGATTCAGGATTCCGATGATGTCTTTCCAGGACTACTTATCAAAATTACGCCATCTCTTAACTCCAGGAAGCTCTTATTCAGGTAG

mRNA sequence

ATGGCTTCCTCAACATCCTGCTGCTCTGTTTTCATTTTCATGGCGCTCATGCTCCTCGCCTCTGCGCAATCCGGTCCCTGCGACGACATCTACCTCGTCAGAGAAGGCGAGTCGCTGCACTCTATCAGCGCCAAGTGCGACGATCCTTTCATAGTCGACTACAATCCGCAGATTCAGGATTCCGATGATGTCTTTCCAGGACTACTTATCAAAATTACGCCATCTCTTAACTCCAGGAAGCTCTTATTCAGGTAG

Coding sequence (CDS)

ATGGCTTCCTCAACATCCTGCTGCTCTGTTTTCATTTTCATGGCGCTCATGCTCCTCGCCTCTGCGCAATCCGGTCCCTGCGACGACATCTACCTCGTCAGAGAAGGCGAGTCGCTGCACTCTATCAGCGCCAAGTGCGACGATCCTTTCATAGTCGACTACAATCCGCAGATTCAGGATTCCGATGATGTCTTTCCAGGACTACTTATCAAAATTACGCCATCTCTTAACTCCAGGAAGCTCTTATTCAGGTAG

Protein sequence

MASSTSCCSVFIFMALMLLASAQSGPCDDIYLVREGESLHSISAKCDDPFIVDYNPQIQDSDDVFPGLLIKITPSLNSRKLLFR

Homology

[Close]

BLAST of Carg10220 vs. NCBI nr
Match: XP_022959284.1 (uncharacterized protein LOC111460313 [Cucurbita moschata])

HSP 1 Score: 168.3 bits (425), Expect = 1.1e-38
Identity = 84/84 (100.00%), Postives = 84/84 (100.00%), Query Frame = 0


Query: 1   MASSTSCCSVFIFMALMLLASAQSGPCDDIYLVREGESLHSISAKCDDPFIVDYNPQIQD 60
           MASSTSCCSVFIFMALMLLASAQSGPCDDIYLVREGESLHSISAKCDDPFIVDYNPQIQD
Sbjct: 41  MASSTSCCSVFIFMALMLLASAQSGPCDDIYLVREGESLHSISAKCDDPFIVDYNPQIQD 100

Query: 61  SDDVFPGLLIKITPSLNSRKLLFR 85
           SDDVFPGLLIKITPSLNSRKLLFR
Sbjct: 101 SDDVFPGLLIKITPSLNSRKLLFR 124

[Close]

BLAST of Carg10220 vs. NCBI nr
Match: XP_023006696.1 (uncharacterized protein LOC111499354 [Cucurbita maxima])

HSP 1 Score: 160.2 bits (404), Expect = 3.0e-36
Identity = 81/84 (96.43%), Postives = 81/84 (96.43%), Query Frame = 0


Query: 1   MASSTSCCSVFIFMALMLLASAQSGPCDDIYLVREGESLHSISAKCDDPFIVDYNPQIQD 60
           MASS SC SVFIFMALMLLASAQSGPCDDIYLVREGESLHSISAKCDDPFIVDYNPQIQD
Sbjct: 41  MASSISCYSVFIFMALMLLASAQSGPCDDIYLVREGESLHSISAKCDDPFIVDYNPQIQD 100

Query: 61  SDDVFPGLLIKITPSLNSRKLLFR 85
           SDDVFPGLLIKITPSLNSRKL FR
Sbjct: 101 SDDVFPGLLIKITPSLNSRKLFFR 124

[Close]

BLAST of Carg10220 vs. NCBI nr
Match: KGN46208.1 (hypothetical protein Csa_6G074605 [Cucumis sativus])

HSP 1 Score: 109.0 bits (271), Expect = 7.9e-21
Identity = 58/77 (75.32%), Postives = 69/77 (89.61%), Query Frame = 0


Query: 9  SVFI-FMALML-LASAQSGPCDDIYLVREGESLHSISAKCDDPFIVDYNPQIQDSDDVFP 68
          SVF+  MAL++ +ASA+S PCDDIY+V+EGE+LH+ISAKC DPFIVD NP IQDSDDVFP
Sbjct: 6  SVFVTVMALIIVVASAESRPCDDIYVVKEGETLHTISAKCGDPFIVDNNPHIQDSDDVFP 65

Query: 69 GLLIKITPSL-NSRKLL 83
          GLLI+ITP+L NSRKLL
Sbjct: 66 GLLIQITPTLINSRKLL 82

[Close]

BLAST of Carg10220 vs. NCBI nr
Match: XP_018830641.1 (PREDICTED: uncharacterized protein LOC108998528 [Juglans regia])

HSP 1 Score: 92.4 bits (228), Expect = 7.7e-16
Identity = 42/57 (73.68%), Postives = 48/57 (84.21%), Query Frame = 0


Query: 26  PCDDIYLVREGESLHSISAKCDDPFIVDYNPQIQDSDDVFPGLLIKITPSLNSRKLL 83
           PCD+IY+VREGE+LH+IS KCDDPFIV+ NP I D DDVFPGL+IKI    NSRKLL
Sbjct: 49  PCDEIYVVREGETLHTISEKCDDPFIVERNPHIHDPDDVFPGLVIKIISPSNSRKLL 105

[Close]

BLAST of Carg10220 vs. NCBI nr
Match: XP_018720710.1 (PREDICTED: uncharacterized protein LOC104424381 [Eucalyptus grandis] >KCW46370.1 hypothetical protein EUGRSUZ_K00211 [Eucalyptus grandis])

HSP 1 Score: 90.1 bits (222), Expect = 3.8e-15
Identity = 40/59 (67.80%), Postives = 49/59 (83.05%), Query Frame = 0


Query: 26  PCDDIYLVREGESLHSISAKCDDPFIVDYNPQIQDSDDVFPGLLIKITPSLNSRKLLFR 85
           PCD+IY+V +GE+LH+IS KC DPFIV+ NP I D DDVFPGL+IKITP+  +RKLL R
Sbjct: 76  PCDEIYVVGDGETLHTISDKCGDPFIVERNPHIHDPDDVFPGLVIKITPTKKARKLLMR 134

[Close]

BLAST of Carg10220 vs. TAIR10
Match: AT5G62150.1 (peptidoglycan-binding LysM domain-containing protein)

HSP 1 Score: 82.8 bits (203), Expect = 1.1e-16
Identity = 41/88 (46.59%), Postives = 55/88 (62.50%), Query Frame = 0


Query: 8   CSVFIFMALMLLASAQSG--------------PCDDIYLVREGESLHSISAKCDDPFIVD 67
           CS  + ++L+LL S +                PC++IY+V EGE+LH+I  KC DPFIV+
Sbjct: 15  CSAVVLLSLILLLSVRENNASNSIRGSQFSTKPCEEIYIVGEGETLHTIGDKCGDPFIVE 74

Query: 68  YNPQIQDSDDVFPGLLIKITPSLNSRKL 82
            NP I D DDVFPGL++KI P   +RKL
Sbjct: 75  RNPHIHDPDDVFPGLVLKIAPFYFNRKL 102

[Close]

BLAST of Carg10220 vs. TAIR10
Match: AT3G52790.1 (peptidoglycan-binding LysM domain-containing protein)

HSP 1 Score: 77.0 bits (188), Expect = 6.1e-15
Identity = 34/50 (68.00%), Postives = 42/50 (84.00%), Query Frame = 0


Query: 27  CDDIYLVREGESLHSISAKCDDPFIVDYNPQIQDSDDVFPGLLIKITPSL 77
           CD+IY V+EGE+L +IS KC DP+IV+ NP I D DD+FPGLLI+ITPSL
Sbjct: 60  CDEIYEVKEGETLQTISEKCGDPYIVEGNPHIHDHDDLFPGLLIRITPSL 109

[Close]

BLAST of Carg10220 vs. TAIR10
Match: AT4G25433.1 (peptidoglycan-binding LysM domain-containing protein)

HSP 1 Score: 75.9 bits (185), Expect = 1.4e-14
Identity = 32/47 (68.09%), Postives = 40/47 (85.11%), Query Frame = 0


Query: 26  PCDDIYLVREGESLHSISAKCDDPFIVDYNPQIQDSDDVFPGLLIKI 73
           PC+++Y+V EG++LHSIS KC DPFIV+ NP I D DDVFPGLLIK+
Sbjct: 58  PCEELYVVGEGDTLHSISEKCGDPFIVERNPHIHDPDDVFPGLLIKL 104

[Close]

BLAST of Carg10220 vs. TrEMBL
Match: tr|A0A0A0K9P3|A0A0A0K9P3_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G074605 PE=4 SV=1)

HSP 1 Score: 109.0 bits (271), Expect = 5.3e-21
Identity = 58/77 (75.32%), Postives = 69/77 (89.61%), Query Frame = 0


Query: 9  SVFI-FMALML-LASAQSGPCDDIYLVREGESLHSISAKCDDPFIVDYNPQIQDSDDVFP 68
          SVF+  MAL++ +ASA+S PCDDIY+V+EGE+LH+ISAKC DPFIVD NP IQDSDDVFP
Sbjct: 6  SVFVTVMALIIVVASAESRPCDDIYVVKEGETLHTISAKCGDPFIVDNNPHIQDSDDVFP 65

Query: 69 GLLIKITPSL-NSRKLL 83
          GLLI+ITP+L NSRKLL
Sbjct: 66 GLLIQITPTLINSRKLL 82

[Close]

BLAST of Carg10220 vs. TrEMBL
Match: tr|A0A2I4FG64|A0A2I4FG64_9ROSI (uncharacterized protein LOC108998528 OS=Juglans regia OX=51240 GN=LOC108998528 PE=4 SV=1)

HSP 1 Score: 92.4 bits (228), Expect = 5.1e-16
Identity = 42/57 (73.68%), Postives = 48/57 (84.21%), Query Frame = 0


Query: 26  PCDDIYLVREGESLHSISAKCDDPFIVDYNPQIQDSDDVFPGLLIKITPSLNSRKLL 83
           PCD+IY+VREGE+LH+IS KCDDPFIV+ NP I D DDVFPGL+IKI    NSRKLL
Sbjct: 49  PCDEIYVVREGETLHTISEKCDDPFIVERNPHIHDPDDVFPGLVIKIISPSNSRKLL 105

[Close]

BLAST of Carg10220 vs. TrEMBL
Match: tr|A0A2N9JAZ8|A0A2N9JAZ8_FAGSY (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS61622 PE=4 SV=1)

HSP 1 Score: 90.1 bits (222), Expect = 2.5e-15
Identity = 42/57 (73.68%), Postives = 49/57 (85.96%), Query Frame = 0


Query: 26  PCDDIYLVREGESLHSISAKCDDPFIVDYNPQIQDSDDVFPGLLIKITPSLNSRKLL 83
           PCD+IY+VREGE+LH+IS KC DPFIV+ NP I D DDVFPGL+IKITPS N RK+L
Sbjct: 62  PCDEIYVVREGETLHTISDKCGDPFIVERNPHIHDPDDVFPGLVIKITPS-NPRKML 117

[Close]

BLAST of Carg10220 vs. TrEMBL
Match: tr|A0A058ZZ69|A0A058ZZ69_EUCGR (Uncharacterized protein OS=Eucalyptus grandis OX=71139 GN=EUGRSUZ_K00211 PE=4 SV=1)

HSP 1 Score: 90.1 bits (222), Expect = 2.5e-15
Identity = 40/59 (67.80%), Postives = 49/59 (83.05%), Query Frame = 0


Query: 26  PCDDIYLVREGESLHSISAKCDDPFIVDYNPQIQDSDDVFPGLLIKITPSLNSRKLLFR 85
           PCD+IY+V +GE+LH+IS KC DPFIV+ NP I D DDVFPGL+IKITP+  +RKLL R
Sbjct: 76  PCDEIYVVGDGETLHTISDKCGDPFIVERNPHIHDPDDVFPGLVIKITPTKKARKLLMR 134

[Close]

BLAST of Carg10220 vs. TrEMBL
Match: tr|A0A061DTJ4|A0A061DTJ4_THECC (Peptidoglycan-binding LysM domain-containing protein, putative OS=Theobroma cacao OX=3641 GN=TCM_005441 PE=4 SV=1)

HSP 1 Score: 89.4 bits (220), Expect = 4.3e-15
Identity = 50/99 (50.51%), Postives = 61/99 (61.62%), Query Frame = 0


Query: 1   MASSTSCCSVFIFMALMLLASAQ-----------------SGPCDDIYLVREGESLHSIS 60
           +A   S C VF+ + L+LL S +                   PCD+IY+V EGE+LHSIS
Sbjct: 35  LADEASWCCVFVLLTLLLLNSCKETTTIANDEDVKGRQLLDRPCDEIYVVGEGETLHSIS 94

Query: 61  AKCDDPFIVDYNPQIQDSDDVFPGLLIKITPSLNSRKLL 83
            KC DPFIV+ NP I D DDVFPGL+IKITP + SRK L
Sbjct: 95  DKCGDPFIVEQNPHIHDPDDVFPGLVIKITP-MKSRKSL 132

The following BLAST results are available for this feature:

BLAST of Carg10220 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022959284.1	1.1e-38	100.00	uncharacterized protein LOC111460313 [Cucurbita moschata]	[more]
XP_023006696.1	3.0e-36	96.43	uncharacterized protein LOC111499354 [Cucurbita maxima]	[more]
KGN46208.1	7.9e-21	75.32	hypothetical protein Csa_6G074605 [Cucumis sativus]	[more]
XP_018830641.1	7.7e-16	73.68	PREDICTED: uncharacterized protein LOC108998528 [Juglans regia]	[more]
XP_018720710.1	3.8e-15	67.80	PREDICTED: uncharacterized protein LOC104424381 [Eucalyptus grandis] >KCW46370.1...	[more]

BLAST of Carg10220 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G62150.1	1.1e-16	46.59	peptidoglycan-binding LysM domain-containing protein	[more]
AT3G52790.1	6.1e-15	68.00	peptidoglycan-binding LysM domain-containing protein	[more]
AT4G25433.1	1.4e-14	68.09	peptidoglycan-binding LysM domain-containing protein	[more]

BLAST of Carg10220 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Carg10220 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0K9P3\|A0A0A0K9P3_CUCSA	5.3e-21	75.32	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G074605 PE=4 SV=1	[more]
tr\|A0A2I4FG64\|A0A2I4FG64_9ROSI	5.1e-16	73.68	uncharacterized protein LOC108998528 OS=Juglans regia OX=51240 GN=LOC108998528 P...	[more]
tr\|A0A2N9JAZ8\|A0A2N9JAZ8_FAGSY	2.5e-15	73.68	Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS61622 PE=4 SV=1	[more]
tr\|A0A058ZZ69\|A0A058ZZ69_EUCGR	2.5e-15	67.80	Uncharacterized protein OS=Eucalyptus grandis OX=71139 GN=EUGRSUZ_K00211 PE=4 SV...	[more]
tr\|A0A061DTJ4\|A0A061DTJ4_THECC	4.3e-15	50.51	Peptidoglycan-binding LysM domain-containing protein, putative OS=Theobroma caca...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR018392	LysM_dom

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg10220-RA	Carg10220-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33648	FAMILY NOT NAMED	coord: 20..77
IPR018392	LysM domain	CDD	cd00118	LysM	coord: 30..72 e-value: 1.46425E-4 score: 33.9981

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg10220	Cla006931	Watermelon (97103) v1	carwmB0220
Carg10220	MELO3C022526	Melon (DHL92) v3.5.1	carmeB0232
Carg10220	ClCG06G000130	Watermelon (Charleston Gray)	carwcgB0223
Carg10220	Cucsa.363100	Cucumber (Gy14) v1	carcgyB0272
Carg10220	CmaCh17G000110	Cucurbita maxima (Rimu)	carcmaB0314
Carg10220	CmoCh17G000130	Cucurbita moschata (Rifu)	carcmoB0320
Carg10220	Lsi09G019300	Bottle gourd (USVL1VR-Ls)	carlsiB205
Carg10220	Cp4.1LG12g00110	Cucurbita pepo (Zucchini)	carcpeB0322
Carg10220	CsGy6G005500	Cucumber (Gy14) v2	carcgybB0247
Carg10220	MELO3C022526.2	Melon (DHL92) v3.6.1	carmedB0239
Carg10220	CsaV3_6G005880	Cucumber (Chinese Long) v3	carcucB0263
Carg10220	Cla97C06G109380	Watermelon (97103) v2	carwmbB0231

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Carg10220	Silver-seed gourd	carcarB270
Carg10220	Cucumber (Gy14) v2	carcgybB0248
Carg10220	Cucumber (Gy14) v1	carcgyB0271
Carg10220	Cucurbita maxima (Rimu)	carcmaB0320
Carg10220	Cucurbita moschata (Rifu)	carcmoB0325
Carg10220	Cucurbita pepo (Zucchini)	carcpeB0326
Carg10220	Wild cucumber (PI 183967)	carcpiB0262
Carg10220	Cucumber (Chinese Long) v2	carcuB0258
Carg10220	Cucumber (Chinese Long) v2	carcuB0259
Carg10220	Cucumber (Chinese Long) v3	carcucB0262
Carg10220	Bottle gourd (USVL1VR-Ls)	carlsiB203
Carg10220	Melon (DHL92) v3.5.1	carmeB0231
Carg10220	Melon (DHL92) v3.6.1	carmedB0238
Carg10220	Watermelon (Charleston Gray)	carwcgB0222
Carg10220	Watermelon (97103) v1	carwmB0221
Carg10220	Watermelon (97103) v2	carwmbB0229
Carg10220	Watermelon (97103) v2	carwmbB0232
Carg10220	Wax gourd	carwgoB0288