Carg10180 (gene) Silver-seed gourd

Overview
NameCarg10180
Typegene
OrganismCucurbita argyrosperma (Silver-seed gourd)
DescriptionCyclin
LocationCucurbita_argyrosperma_scaffold_039 : 946535 .. 947944 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTGGAAGAAGAAAGCTCCTCCATGATGCCAAAGCTCATCACTTTCCTCTCTTCTGTGCTTCAAAGAGTGGCCGAGTCGAACGACGATCTCGTGGACGATGACTCGGCCATCGAAACGCAGAAGAACTCGGCGTTCCATGGCTTGACTCGCCCATCTATCTCTCTTCATACCTACCTTGAAAGGATCTTCAAGTATGCCAATTGTAGCAACTCTTGCTTCATTGTTGCTTATGTTTATCTTGACCGCTTTGCTCAAAGGCAGCCATTGTTTCCTATCAACTCCTTTAATGTTCATCGTTTGCTCATTACAAGTGTTCTTGTTGCTGCCAAGTTCATGGATGATCTGTAAGTTTAATTTTCTTCTCTCTTTCCCCCCCTTTTTTGTAATATACAGTAATAATTGAGCTTTAGGACCTCCATTCGTTGTGTTACGAGTATCTATATGCATCTCGACTAATTTCATAAGATTCGTGCATGAACCTATAATATTTAAGAACCTCTGCAACTCCGTGATAATTGAATCTAAATCTTTAGAGGGTATACCAAAATGTGAGATTCTACATTGGTTGGAGAGAGGAATGAAGCATTCCTTATAAGGGTGTGGAAACCTCTCCCTAGTAGACGCATTGAAAATCATGAAGCTAACGACAATACATAATGGGTAAAAGCGAATAATATCTGTCAGCCACTAGGCAGTGTGCCAACAAGAACGTTGGGTCCCCAAGAAGGGGGTAGATTGTGAGATTCCACGTTGATTAGAGAGGGGAACGAAACATTCCTTATAAGGGTGTGGAAACCTCTCCCTAGTAAATGCGTTTGAAAACCATGCGGTTGATGACGATACGTAACGAGCCAAAGCGGACAATATATGCTAGCAGTAGGCTTGAACTATTACAAATGGTATTAGAGCCAGTCACCAGGCAGTGTGCCAACGAGGACGTTGGGTTCTCAAGAGGGGTGAATGGTAAGATTCCACATTAGTTGAAGAGGGAAACGAAACATTTCTTATAAGAGCATGAAAACCTCTCCCTAGTAGACACATTTTAAAACCGTGAGGCTGATTACGACACGTAACGGACTAAAACGGACATTATAATTTGAAAAGTTGGTTTTTGTTTTCAGGTGTTACAACAATGGTTTCTATGCAAGAGTTGGAGGGATCAGCACAAGAGAAATAAACTTTCTTGAAGTGGATTTCCTCTTTGGTTTAGGGTTTCACTTGAATGTGACACCCAACACATTCCACACCTATTGCTCTTGTTTACACAAAGAGATGCTTCAACTAAAACCTCCTCTTAGTAACTCTCTATTAACTTCTTCAGAAACATCACTAAATAAAGCTTCCCATTTGAGCTTTGAAGAAGATGAAGCTTCCCATCATCAAAACCAACACCAACTAGCTGCTTAA

mRNA sequence

ATGGTGGAAGAAGAAAGCTCCTCCATGATGCCAAAGCTCATCACTTTCCTCTCTTCTGTGCTTCAAAGAGTGGCCGAGTCGAACGACGATCTCGTGGACGATGACTCGGCCATCGAAACGCAGAAGAACTCGGCGTTCCATGGCTTGACTCGCCCATCTATCTCTCTTCATACCTACCTTGAAAGGATCTTCAAGTATGCCAATTGTAGCAACTCTTGCTTCATTGTTGCTTATGTTTATCTTGACCGCTTTGCTCAAAGGCAGCCATTGTTTCCTATCAACTCCTTTAATGTTCATCGTTTGCTCATTACAAGGTTTCACTTGAATGTGACACCCAACACATTCCACACCTATTGCTCTTGTTTACACAAAGAGATGCTTCAACTAAAACCTCCTCTTAGTAACTCTCTATTAACTTCTTCAGAAACATCACTAAATAAAGCTTCCCATTTGAGCTTTGAAGAAGATGAAGCTTCCCATCATCAAAACCAACACCAACTAGCTGCTTAA

Coding sequence (CDS)

ATGGTGGAAGAAGAAAGCTCCTCCATGATGCCAAAGCTCATCACTTTCCTCTCTTCTGTGCTTCAAAGAGTGGCCGAGTCGAACGACGATCTCGTGGACGATGACTCGGCCATCGAAACGCAGAAGAACTCGGCGTTCCATGGCTTGACTCGCCCATCTATCTCTCTTCATACCTACCTTGAAAGGATCTTCAAGTATGCCAATTGTAGCAACTCTTGCTTCATTGTTGCTTATGTTTATCTTGACCGCTTTGCTCAAAGGCAGCCATTGTTTCCTATCAACTCCTTTAATGTTCATCGTTTGCTCATTACAAGGTTTCACTTGAATGTGACACCCAACACATTCCACACCTATTGCTCTTGTTTACACAAAGAGATGCTTCAACTAAAACCTCCTCTTAGTAACTCTCTATTAACTTCTTCAGAAACATCACTAAATAAAGCTTCCCATTTGAGCTTTGAAGAAGATGAAGCTTCCCATCATCAAAACCAACACCAACTAGCTGCTTAA

Protein sequence

MVEEESSSMMPKLITFLSSVLQRVAESNDDLVDDDSAIETQKNSAFHGLTRPSISLHTYLERIFKYANCSNSCFIVAYVYLDRFAQRQPLFPINSFNVHRLLITRFHLNVTPNTFHTYCSCLHKEMLQLKPPLSNSLLTSSETSLNKASHLSFEEDEASHHQNQHQLAA
Homology
[Close]
BLAST of Carg10180 vs. NCBI nr
Match: XP_022958930.1 (cyclin-U4-1-like [Cucurbita moschata])

HSP 1 Score: 306.6 bits (784), Expect = 5.2e-80
Identity = 166/210 (79.05%), Postives = 167/210 (79.52%), Query Frame = 0 

Query: 1   MVEEESSSMMPKLITFLSSVLQRVAESNDDLVDDDSAIETQKNSAFHGLTRPSISLHTYL 60
           MVEEESSSMMPKLITFLSSVLQRVAESNDDLVDDDSAIETQKNSAFHGLTRPSISLHTYL
Sbjct: 1   MVEEESSSMMPKLITFLSSVLQRVAESNDDLVDDDSAIETQKNSAFHGLTRPSISLHTYL 60

Query: 61  ERIFKYANCSNSCFIVAYVYLDRFAQRQPLFPINSFNVHRLLITR--------------- 120
           ERIFKYANCSNSCFIVAYVYLDRFAQRQPL PINSFNVHRLLIT                
Sbjct: 61  ERIFKYANCSNSCFIVAYVYLDRFAQRQPLLPINSFNVHRLLITSVLVAAKFMDDLCYNN 120

Query: 121 --------------------------FHLNVTPNTFHTYCSCLHKEMLQLKPPLSNSLLT 170
                                     FHLNVTPNTFHTYCSCLHKEMLQLKPPLSNSLLT
Sbjct: 121 GFYARVGGISTREINFLEVDFLFGLGFHLNVTPNTFHTYCSCLHKEMLQLKPPLSNSLLT 180

[Close]
BLAST of Carg10180 vs. NCBI nr
Match: XP_023548896.1 (cyclin-U4-1-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 303.9 bits (777), Expect = 3.4e-79
Identity = 165/210 (78.57%), Postives = 166/210 (79.05%), Query Frame = 0 

Query: 1   MVEEESSSMMPKLITFLSSVLQRVAESNDDLVDDDSAIETQKNSAFHGLTRPSISLHTYL 60
           MVEEESSSMMPKLITFLSSVLQRVAESNDDLVDDDSAIETQKNSAFHGLTRPSISLHTYL
Sbjct: 1   MVEEESSSMMPKLITFLSSVLQRVAESNDDLVDDDSAIETQKNSAFHGLTRPSISLHTYL 60

Query: 61  ERIFKYANCSNSCFIVAYVYLDRFAQRQPLFPINSFNVHRLLITR--------------- 120
           ERIFKYANCSNSCFIVAYVYLDRFAQRQPL PINSFNVHRLLIT                
Sbjct: 61  ERIFKYANCSNSCFIVAYVYLDRFAQRQPLLPINSFNVHRLLITSVLVAAKFMDDLCYNN 120

Query: 121 --------------------------FHLNVTPNTFHTYCSCLHKEMLQLKPPLSNSLLT 170
                                     FHLNVTPNTFHTYCSCLHKEML LKPPLSNSLLT
Sbjct: 121 GFYARVGGISTKEINFLEVDFLFGLGFHLNVTPNTFHTYCSCLHKEMLLLKPPLSNSLLT 180

[Close]
BLAST of Carg10180 vs. NCBI nr
Match: XP_023006685.1 (cyclin-U4-1-like [Cucurbita maxima])

HSP 1 Score: 300.4 bits (768), Expect = 3.7e-78
Identity = 163/210 (77.62%), Postives = 165/210 (78.57%), Query Frame = 0 

Query: 1   MVEEESSSMMPKLITFLSSVLQRVAESNDDLVDDDSAIETQKNSAFHGLTRPSISLHTYL 60
           MVEEESSSMMPKLITFLSSVLQRVAESND+LVDDDSAIETQKNSAFHGLTRPSISLHTYL
Sbjct: 1   MVEEESSSMMPKLITFLSSVLQRVAESNDNLVDDDSAIETQKNSAFHGLTRPSISLHTYL 60

Query: 61  ERIFKYANCSNSCFIVAYVYLDRFAQRQPLFPINSFNVHRLLITR--------------- 120
           ERIFKY NCSNSCFIVAYVYLDRFAQRQPL PINSFNVHRLLIT                
Sbjct: 61  ERIFKYVNCSNSCFIVAYVYLDRFAQRQPLLPINSFNVHRLLITSVLVAAKFMDDLCYNN 120

Query: 121 --------------------------FHLNVTPNTFHTYCSCLHKEMLQLKPPLSNSLLT 170
                                     FHLNVTPNTFHTYCSCLHKEML LKPPLSNSLLT
Sbjct: 121 GFYARVGGISTREINFLEVDFLFGLGFHLNVTPNTFHTYCSCLHKEMLLLKPPLSNSLLT 180

[Close]
BLAST of Carg10180 vs. NCBI nr
Match: XP_022155727.1 (cyclin-U4-1-like [Momordica charantia])

HSP 1 Score: 226.5 bits (576), Expect = 6.9e-56
Identity = 133/207 (64.25%), Postives = 144/207 (69.57%), Query Frame = 0 

Query: 1   MVEEESSSMMPKLITFLSSVLQRVAESNDDLVDDDSAIETQKNSAFHGLTRPSISLHTYL 60
           MVE ES+SMMPKLITFLSSVLQRVAESND L   DSAIETQK+SAFHGLTRP ISLH+YL
Sbjct: 1   MVEGESTSMMPKLITFLSSVLQRVAESNDHL---DSAIETQKSSAFHGLTRPGISLHSYL 60

Query: 61  ERIFKYANCSNSCFIVAYVYLDRFAQRQPLFPINSFNVHRLLITR--------------- 120
           ERI KYANCSNSCFIVAYVYLDRFAQRQPL PINS+NVHRLLIT                
Sbjct: 61  ERILKYANCSNSCFIVAYVYLDRFAQRQPLLPINSYNVHRLLITSVLVAAKFMDDRCYNN 120

Query: 121 --------------------------FHLNVTPNTFHTYCSCLHKEMLQLKPPLSNSL-- 165
                                     FHLNVTPNTFHTYCS L KEML  +PPL++ +  
Sbjct: 121 AFYARVGGISTTEINFLEVDFLFGLGFHLNVTPNTFHTYCSSLQKEMLLQQPPLTSPITS 180

[Close]
BLAST of Carg10180 vs. NCBI nr
Match: XP_004145018.2 (PREDICTED: cyclin-U4-1-like [Cucumis sativus] >KGN46271.1 hypothetical protein Csa_6G078670 [Cucumis sativus])

HSP 1 Score: 198.7 bits (504), Expect = 1.5e-47
Identity = 111/177 (62.71%), Postives = 120/177 (67.80%), Query Frame = 0 

Query: 1   MVEEESSS-MMPKLITFLSSVLQRVAESNDDLVDDDSAIETQKNSAFHGLTRPSISLHTY 60
           MVE+ES+S  MPKLITFLSSVLQRVAESNDDL ++DSA ETQKNSAFHGLTRPSISL +Y
Sbjct: 1   MVEQESTSCSMPKLITFLSSVLQRVAESNDDLDNNDSATETQKNSAFHGLTRPSISLQSY 60

Query: 61  LERIFKYANCSNSCFIVAYVYLDRFAQRQPLFPINSFNVHRLLITR-------------- 120
           LERIFKYANCSNSCFIVAYVYLDRFAQ+QPL PINS+NVHRLLIT               
Sbjct: 61  LERIFKYANCSNSCFIVAYVYLDRFAQKQPLLPINSYNVHRLLITSVLVAAKFMDDLCYN 120

Query: 121 ---------------------------FHLNVTPNTFHTYCSCLHKEMLQLKPPLSN 136
                                      F LNVTP TFHTY SCL  E+  L PP +N
Sbjct: 121 NAFYARVGGISTREINFLEVDFLFGLGFELNVTPTTFHTYSSCLQNEIFLLNPPFTN 177

[Close]
BLAST of Carg10180 vs. TAIR10
Match: AT2G44740.1 (cyclin p4;1)

HSP 1 Score: 152.5 bits (384), Expect = 2.3e-37
Identity = 98/203 (48.28%), Postives = 120/203 (59.11%), Query Frame = 0 

Query: 1   MVEEESSSMMPKLITFLSSVLQRVAESNDDLVDDDSAIETQKNSAFHGLTRPSISLHTYL 60
           M E E+ S+M KLI FLSS+L+RVAESND  +    A ++Q+ S FHGL+RP+I++ +YL
Sbjct: 1   MAELENPSVMSKLIAFLSSLLERVAESND--LTRRVATQSQRVSVFHGLSRPTITIQSYL 60

Query: 61  ERIFKYANCSNSCFIVAYVYLDRFAQRQPLFPINSFNVHRLLITR--------------- 120
           ERIFKYANCS SCF+VAYVYLDRF  RQP  PINSFNVHRLLIT                
Sbjct: 61  ERIFKYANCSPSCFVVAYVYLDRFTHRQPSLPINSFNVHRLLITSVMVAAKFLDDLYYNN 120

Query: 121 --------------------------FHLNVTPNTFHTYCSCLHKEMLQLKPPLSNSLLT 163
                                     F LNVTPNTF+ Y S L KEM  L+ PLS  ++ 
Sbjct: 121 AYYAKVGGISTKEMNFLELDFLFGLGFELNVTPNTFNAYFSYLQKEMTLLQ-PLSLVVVP 180

[Close]
BLAST of Carg10180 vs. TAIR10
Match: AT5G61650.1 (CYCLIN P4;2)

HSP 1 Score: 136.7 bits (343), Expect = 1.3e-32
Identity = 89/214 (41.59%), Postives = 118/214 (55.14%), Query Frame = 0 

Query: 2   VEEESSSMMPKLITFLSSVLQRVAESNDDLVDDDSAIETQKNSAFHGLTRPSISLHTYLE 61
           ++E  + +MP ++T +S +LQRV+E+ND+L       + QK S+F G+T+PSIS+ +YLE
Sbjct: 14  LQEPLAEIMPSVLTAMSYLLQRVSETNDNL------SQKQKPSSFTGVTKPSISIRSYLE 73

Query: 62  RIFKYANCSNSCFIVAYVYLDRFAQRQPLFPINSFNVHRLLITR---------------- 121
           RIF+YANCS SC+IVAY+YLDRF ++QP  PINSFNVHRL+IT                 
Sbjct: 74  RIFEYANCSYSCYIVAYIYLDRFVKKQPFLPINSFNVHRLIITSVLVSAKFMDDLSYNNE 133

Query: 122 -------------------------FHLNVTPNTFHTYCSCLHKEMLQLKPPLS-----N 170
                                    F LNVT +TF+ YC  L +EM  L    S     +
Sbjct: 134 YYAKVGGISREEMNMLELDFLFGIGFELNVTVSTFNNYCCFLQREMAMLMKMKSLFLEPS 193

[Close]
BLAST of Carg10180 vs. TAIR10
Match: AT5G07450.1 (cyclin p4;3)

HSP 1 Score: 127.1 bits (318), Expect = 1.0e-29
Identity = 72/166 (43.37%), Postives = 100/166 (60.24%), Query Frame = 0 

Query: 3   EEESSSMMPKLITFLSSVLQRVAESNDDLVDDDSAIETQKNSAFHGLTRPSISLHTYLER 62
           +E  + +MP +IT +SS+LQRV+E+NDDL       E ++ SAF+ +T+PSIS+ +Y+ER
Sbjct: 13  QEPMAEIMPNVITAMSSLLQRVSETNDDL--SRPFREHKRISAFNAVTKPSISIRSYMER 72

Query: 63  IFKYANCSNSCFIVAYVYLDRFAQRQPLFPINSFNVHRLLITR----------------- 122
           IFKYA+CS+SC+IVAY+YLDRF Q+QPL PI+S NVHRL+IT                  
Sbjct: 73  IFKYADCSDSCYIVAYIYLDRFIQKQPLLPIDSSNVHRLIITSVLVSAKFMDDLCYNNAF 132

Query: 123 ------------------------FHLNVTPNTFHTYCSCLHKEML 128
                                   F LNVT +T++ YCS L +EM+
Sbjct: 133 YAKVGGITTEEMNLLELDFLFGIGFQLNVTISTYNDYCSSLQREMV 176

[Close]
BLAST of Carg10180 vs. TAIR10
Match: AT3G21870.1 (cyclin p2;1)

HSP 1 Score: 86.7 bits (213), Expect = 1.5e-17
Identity = 42/102 (41.18%), Postives = 63/102 (61.76%), Query Frame = 0 

Query: 3   EEESSSMMPKLITFLSSVLQRVAESNDDLVDDDSAIETQKNSAFHGLTRPSISLHTYLER 62
           E  + +  P+++T +S V++++   N+ L         +   AFHG+  PSIS+  YLER
Sbjct: 17  ESATEAATPRVLTIISHVMEKLVARNEWLAKQTKGF-GKSLEAFHGVRAPSISIAKYLER 76

Query: 63  IFKYANCSNSCFIVAYVYLDRFAQRQPLFPINSFNVHRLLIT 105
           I+KY  CS +CF+V YVY+DR A + P   + S NVHRLL+T
Sbjct: 77  IYKYTKCSPACFVVGYVYIDRLAHKHPGSLVVSLNVHRLLVT 117

[Close]
BLAST of Carg10180 vs. TAIR10
Match: AT3G05327.1 (Cyclin family protein)

HSP 1 Score: 70.9 bits (172), Expect = 8.7e-13
Identity = 41/111 (36.94%), Postives = 60/111 (54.05%), Query Frame = 0 

Query: 3   EEESSSMMPKLITFLSSVLQRVAESNDDLVDDDSAIETQKNSA-----FHGLTRPSISLH 62
           ++   S  P++IT L+S L+++ + N           T+ N A     FHG   PS+S++
Sbjct: 23  DQPPDSTPPRVITLLASTLEKMIQKN------KKKFHTRHNKADEITMFHGSKAPSLSIY 82

Query: 63  TYLERIFKYANCSNSCFIVAYVYLDRFAQRQPLFP----INSFNVHRLLIT 105
            Y ERI +YA CS  CF+ A+ Y+ R+ QR         + S NVHRLLIT
Sbjct: 83  RYTERIHRYAQCSPVCFVAAFAYILRYLQRPEATSTARRLTSLNVHRLLIT 127

[Close]
BLAST of Carg10180 vs. Swiss-Prot
Match: sp|O80513|CCU41_ARATH (Cyclin-U4-1 OS=Arabidopsis thaliana OX=3702 GN=CYCU4-1 PE=1 SV=1)

HSP 1 Score: 152.5 bits (384), Expect = 4.1e-36
Identity = 98/203 (48.28%), Postives = 120/203 (59.11%), Query Frame = 0 

Query: 1   MVEEESSSMMPKLITFLSSVLQRVAESNDDLVDDDSAIETQKNSAFHGLTRPSISLHTYL 60
           M E E+ S+M KLI FLSS+L+RVAESND  +    A ++Q+ S FHGL+RP+I++ +YL
Sbjct: 1   MAELENPSVMSKLIAFLSSLLERVAESND--LTRRVATQSQRVSVFHGLSRPTITIQSYL 60

Query: 61  ERIFKYANCSNSCFIVAYVYLDRFAQRQPLFPINSFNVHRLLITR--------------- 120
           ERIFKYANCS SCF+VAYVYLDRF  RQP  PINSFNVHRLLIT                
Sbjct: 61  ERIFKYANCSPSCFVVAYVYLDRFTHRQPSLPINSFNVHRLLITSVMVAAKFLDDLYYNN 120

Query: 121 --------------------------FHLNVTPNTFHTYCSCLHKEMLQLKPPLSNSLLT 163
                                     F LNVTPNTF+ Y S L KEM  L+ PLS  ++ 
Sbjct: 121 AYYAKVGGISTKEMNFLELDFLFGLGFELNVTPNTFNAYFSYLQKEMTLLQ-PLSLVVVP 180

[Close]
BLAST of Carg10180 vs. Swiss-Prot
Match: sp|Q9FKF6|CCU43_ARATH (Cyclin-U4-3 OS=Arabidopsis thaliana OX=3702 GN=CYCU4-3 PE=1 SV=1)

HSP 1 Score: 136.7 bits (343), Expect = 2.3e-31
Identity = 89/214 (41.59%), Postives = 118/214 (55.14%), Query Frame = 0 

Query: 2   VEEESSSMMPKLITFLSSVLQRVAESNDDLVDDDSAIETQKNSAFHGLTRPSISLHTYLE 61
           ++E  + +MP ++T +S +LQRV+E+ND+L       + QK S+F G+T+PSIS+ +YLE
Sbjct: 14  LQEPLAEIMPSVLTAMSYLLQRVSETNDNL------SQKQKPSSFTGVTKPSISIRSYLE 73

Query: 62  RIFKYANCSNSCFIVAYVYLDRFAQRQPLFPINSFNVHRLLITR---------------- 121
           RIF+YANCS SC+IVAY+YLDRF ++QP  PINSFNVHRL+IT                 
Sbjct: 74  RIFEYANCSYSCYIVAYIYLDRFVKKQPFLPINSFNVHRLIITSVLVSAKFMDDLSYNNE 133

Query: 122 -------------------------FHLNVTPNTFHTYCSCLHKEMLQLKPPLS-----N 170
                                    F LNVT +TF+ YC  L +EM  L    S     +
Sbjct: 134 YYAKVGGISREEMNMLELDFLFGIGFELNVTVSTFNNYCCFLQREMAMLMKMKSLFLEPS 193

[Close]
BLAST of Carg10180 vs. Swiss-Prot
Match: sp|Q9LY16|CCU42_ARATH (Cyclin-U4-2 OS=Arabidopsis thaliana OX=3702 GN=CYCU4-2 PE=1 SV=1)

HSP 1 Score: 127.1 bits (318), Expect = 1.9e-28
Identity = 72/166 (43.37%), Postives = 100/166 (60.24%), Query Frame = 0 

Query: 3   EEESSSMMPKLITFLSSVLQRVAESNDDLVDDDSAIETQKNSAFHGLTRPSISLHTYLER 62
           +E  + +MP +IT +SS+LQRV+E+NDDL       E ++ SAF+ +T+PSIS+ +Y+ER
Sbjct: 13  QEPMAEIMPNVITAMSSLLQRVSETNDDL--SRPFREHKRISAFNAVTKPSISIRSYMER 72

Query: 63  IFKYANCSNSCFIVAYVYLDRFAQRQPLFPINSFNVHRLLITR----------------- 122
           IFKYA+CS+SC+IVAY+YLDRF Q+QPL PI+S NVHRL+IT                  
Sbjct: 73  IFKYADCSDSCYIVAYIYLDRFIQKQPLLPIDSSNVHRLIITSVLVSAKFMDDLCYNNAF 132

Query: 123 ------------------------FHLNVTPNTFHTYCSCLHKEML 128
                                   F LNVT +T++ YCS L +EM+
Sbjct: 133 YAKVGGITTEEMNLLELDFLFGIGFQLNVTISTYNDYCSSLQREMV 176

[Close]
BLAST of Carg10180 vs. Swiss-Prot
Match: sp|Q7XC35|CCP41_ORYSJ (Cyclin-P4-1 OS=Oryza sativa subsp. japonica OX=39947 GN=CYCP4-1 PE=2 SV=1)

HSP 1 Score: 109.4 bits (272), Expect = 4.0e-23
Identity = 66/170 (38.82%), Postives = 87/170 (51.18%), Query Frame = 0 

Query: 5   ESSSMMPKLITFLSSVLQRVAESNDDLVDDDSAIETQKN-SAFHGLTRPSISLHTYLERI 64
           E +  +P+++  LSS+LQRVAE                  SAF GLT+P+IS+  YLERI
Sbjct: 5   EVAEAVPRVVAILSSLLQRVAERXXXXXXXXXXXXXXXXVSAFQGLTKPAISIGGYLERI 64

Query: 65  FKYANCSNSCFIVAYVYLDRFAQRQPLFPINSFNVHRLLIT------------------- 124
           F++ANCS SC++VAY+YLDRF +R+P   ++SFNVHRLLIT                   
Sbjct: 65  FRFANCSPSCYVVAYIYLDRFLRRRPALAVDSFNVHRLLITSVLTAVKFVDDICYNNAYF 124

Query: 125 ----------------------RFHLNVTPNTFHTYCSCLHKEMLQLKPP 133
                                  F LNVTP  F +YC+ L  EM  L+ P
Sbjct: 125 ARVGGISLMEMNYLEVDFLFGIAFDLNVTPAAFASYCAVLQSEMTYLEQP 174

[Close]
BLAST of Carg10180 vs. Swiss-Prot
Match: sp|Q9LJ45|CCU11_ARATH (Cyclin-U1-1 OS=Arabidopsis thaliana OX=3702 GN=CYCU1-1 PE=1 SV=1)

HSP 1 Score: 86.7 bits (213), Expect = 2.8e-16
Identity = 42/102 (41.18%), Postives = 63/102 (61.76%), Query Frame = 0 

Query: 3   EEESSSMMPKLITFLSSVLQRVAESNDDLVDDDSAIETQKNSAFHGLTRPSISLHTYLER 62
           E  + +  P+++T +S V++++   N+ L         +   AFHG+  PSIS+  YLER
Sbjct: 17  ESATEAATPRVLTIISHVMEKLVARNEWLAKQTKGF-GKSLEAFHGVRAPSISIAKYLER 76

Query: 63  IFKYANCSNSCFIVAYVYLDRFAQRQPLFPINSFNVHRLLIT 105
           I+KY  CS +CF+V YVY+DR A + P   + S NVHRLL+T
Sbjct: 77  IYKYTKCSPACFVVGYVYIDRLAHKHPGSLVVSLNVHRLLVT 117

[Close]
BLAST of Carg10180 vs. TrEMBL
Match: tr|A0A0A0KER4|A0A0A0KER4_CUCSA (Cyclin OS=Cucumis sativus OX=3659 GN=Csa_6G078670 PE=3 SV=1)

HSP 1 Score: 198.7 bits (504), Expect = 1.0e-47
Identity = 111/177 (62.71%), Postives = 120/177 (67.80%), Query Frame = 0 

Query: 1   MVEEESSS-MMPKLITFLSSVLQRVAESNDDLVDDDSAIETQKNSAFHGLTRPSISLHTY 60
           MVE+ES+S  MPKLITFLSSVLQRVAESNDDL ++DSA ETQKNSAFHGLTRPSISL +Y
Sbjct: 1   MVEQESTSCSMPKLITFLSSVLQRVAESNDDLDNNDSATETQKNSAFHGLTRPSISLQSY 60

Query: 61  LERIFKYANCSNSCFIVAYVYLDRFAQRQPLFPINSFNVHRLLITR-------------- 120
           LERIFKYANCSNSCFIVAYVYLDRFAQ+QPL PINS+NVHRLLIT               
Sbjct: 61  LERIFKYANCSNSCFIVAYVYLDRFAQKQPLLPINSYNVHRLLITSVLVAAKFMDDLCYN 120

Query: 121 ---------------------------FHLNVTPNTFHTYCSCLHKEMLQLKPPLSN 136
                                      F LNVTP TFHTY SCL  E+  L PP +N
Sbjct: 121 NAFYARVGGISTREINFLEVDFLFGLGFELNVTPTTFHTYSSCLQNEIFLLNPPFTN 177

[Close]
BLAST of Carg10180 vs. TrEMBL
Match: tr|A0A1S4E2M4|A0A1S4E2M4_CUCME (cyclin-U4-1-like OS=Cucumis melo OX=3656 GN=LOC103498997 PE=4 SV=1)

HSP 1 Score: 194.1 bits (492), Expect = 2.5e-46
Identity = 107/171 (62.57%), Postives = 113/171 (66.08%), Query Frame = 0 

Query: 6   SSSMMPKLITFLSSVLQRVAESNDDLVDDDSAIETQKNSAFHGLTRPSISLHTYLERIFK 65
           +S  MPKLITFLSSVLQRVAESNDDL D+D A ETQKNSAFHGLTRPSISL +YLERIFK
Sbjct: 127 TSCSMPKLITFLSSVLQRVAESNDDLDDNDLATETQKNSAFHGLTRPSISLQSYLERIFK 186

Query: 66  YANCSNSCFIVAYVYLDRFAQRQPLFPINSFNVHRLLITR-------------------- 125
           YANCSNSCFIVAYVYLDRFAQ+QPL PINS+NVHRLLIT                     
Sbjct: 187 YANCSNSCFIVAYVYLDRFAQKQPLLPINSYNVHRLLITSVLVAAKFMDDLCYNNAFYAR 246

Query: 126 ---------------------FHLNVTPNTFHTYCSCLHKEMLQLKPPLSN 136
                                F LNVTP TFHTY SCL  E+  L PP SN
Sbjct: 247 VGGISTREINFLEVDFLFGLGFELNVTPTTFHTYSSCLQNEIFLLHPPFSN 297

[Close]
BLAST of Carg10180 vs. TrEMBL
Match: tr|B9SKL0|B9SKL0_RICCO (Cyclin OS=Ricinus communis OX=3988 GN=RCOM_0658420 PE=3 SV=1)

HSP 1 Score: 182.6 bits (462), Expect = 7.5e-43
Identity = 114/207 (55.07%), Postives = 129/207 (62.32%), Query Frame = 0 

Query: 1   MVEEESSSMMPKLITFLSSVLQRVAESNDDLVDDDSAIETQKNSAFHGLTRPSISLHTYL 60
           M E ES ++MPKLITFLSS+LQRVAESN    D +  I TQK S FHGLTRP+IS+  YL
Sbjct: 1   MAELESPNLMPKLITFLSSLLQRVAESN----DLNLQIHTQKISVFHGLTRPTISIQNYL 60

Query: 61  ERIFKYANCSNSCFIVAYVYLDRFAQRQPLFPINSFNVHRLLITR--------------- 120
           ERIFKYANCS SCFIVAYVYLDRFAQRQP  P+NSFNVHRLLIT                
Sbjct: 61  ERIFKYANCSPSCFIVAYVYLDRFAQRQPSLPLNSFNVHRLLITSVMVAAKFMDDMYYNN 120

Query: 121 --------------------------FHLNVTPNTFHTYCSCLHKEMLQLKPPLSNSLLT 165
                                     FHLNVTPNTFHTY S L +EM+ L+PPL  SL+ 
Sbjct: 121 AYYAKVGGISTIEMNYLEVDFLFGLGFHLNVTPNTFHTYSSYLQREMM-LQPPL--SLVE 180

[Close]
BLAST of Carg10180 vs. TrEMBL
Match: tr|A0A067JY35|A0A067JY35_JATCU (Cyclin OS=Jatropha curcas OX=180498 GN=JCGZ_14652 PE=3 SV=1)

HSP 1 Score: 179.5 bits (454), Expect = 6.4e-42
Identity = 114/212 (53.77%), Postives = 128/212 (60.38%), Query Frame = 0 

Query: 1   MVEEESSSMMPKLITFLSSVLQRVAESNDDLVDDDSAIETQKNSAFHGLTRPSISLHTYL 60
           M E ES ++M KLITFLSS+LQRVAESN    D +S  + QK S FHGLTRP+IS+ +YL
Sbjct: 1   MAELESPNVMQKLITFLSSLLQRVAESN----DLNSQFQPQKISVFHGLTRPTISIQSYL 60

Query: 61  ERIFKYANCSNSCFIVAYVYLDRFAQRQPLFPINSFNVHRLLITR--------------- 120
           ERIFKYANCS SCFIVAYVYLDRFAQRQP  PINSFNVHRLLIT                
Sbjct: 61  ERIFKYANCSPSCFIVAYVYLDRFAQRQPSLPINSFNVHRLLITSVLVAAKFMDDMYYNN 120

Query: 121 --------------------------FHLNVTPNTFHTYCSCLHKEML---QLKPPLSNS 165
                                     FHLNVTPNTFHTYCS L +EM+   Q +PPLS  
Sbjct: 121 AYYAKVGGISTIEMNYLEVDFLFGLGFHLNVTPNTFHTYCSYLQREMMLQPQPQPPLS-- 180

[Close]
BLAST of Carg10180 vs. TrEMBL
Match: tr|A0A2C9VTP3|A0A2C9VTP3_MANES (Cyclin OS=Manihot esculenta OX=3983 GN=MANES_05G056500 PE=3 SV=1)

HSP 1 Score: 177.2 bits (448), Expect = 3.2e-41
Identity = 112/210 (53.33%), Postives = 125/210 (59.52%), Query Frame = 0 

Query: 1   MVEEESSSMMPKLITFLSSVLQRVAESNDDLVDDDSAIETQKNSAFHGLTRPSISLHTYL 60
           M E ES  MMPKLITFLSS+LQRV+ESN    D +     QK S FHGLTRP+IS+ +YL
Sbjct: 1   MAELESPDMMPKLITFLSSLLQRVSESN----DLNCQFHPQKISVFHGLTRPTISVQSYL 60

Query: 61  ERIFKYANCSNSCFIVAYVYLDRFAQRQPLFPINSFNVHRLLITR--------------- 120
           ERIFKYANCS SCFIVAYVYLDRFAQRQP  P+NSFNVHRLLIT                
Sbjct: 61  ERIFKYANCSPSCFIVAYVYLDRFAQRQPSLPLNSFNVHRLLITSVMVAAKFMDDMYYNN 120

Query: 121 --------------------------FHLNVTPNTFHTYCSCLHKE-MLQLKPPLSNSLL 165
                                     FHLNVTPNTFHTYCS L +E MLQ +PP      
Sbjct: 121 AYYAKVGGISTIEMNYLEVDFLFGLGFHLNVTPNTFHTYCSHLQREMMLQHQPP------ 180

The following BLAST results are available for this feature:
BLAST of Carg10180 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022958930.15.2e-8079.05cyclin-U4-1-like [Cucurbita moschata][more]
XP_023548896.13.4e-7978.57cyclin-U4-1-like [Cucurbita pepo subsp. pepo][more]
XP_023006685.13.7e-7877.62cyclin-U4-1-like [Cucurbita maxima][more]
XP_022155727.16.9e-5664.25cyclin-U4-1-like [Momordica charantia][more]
XP_004145018.21.5e-4762.71PREDICTED: cyclin-U4-1-like [Cucumis sativus] >KGN46271.1 hypothetical protein C... [more]
BLAST of Carg10180 vs. TAIR10
Match NameE-valueIdentityDescription
AT2G44740.12.3e-3748.28cyclin p4;1[more]
AT5G61650.11.3e-3241.59CYCLIN P4;2[more]
AT5G07450.11.0e-2943.37cyclin p4;3[more]
AT3G21870.11.5e-1741.18cyclin p2;1[more]
AT3G05327.18.7e-1336.94Cyclin family protein[more]
BLAST of Carg10180 vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|O80513|CCU41_ARATH4.1e-3648.28Cyclin-U4-1 OS=Arabidopsis thaliana OX=3702 GN=CYCU4-1 PE=1 SV=1[more]
sp|Q9FKF6|CCU43_ARATH2.3e-3141.59Cyclin-U4-3 OS=Arabidopsis thaliana OX=3702 GN=CYCU4-3 PE=1 SV=1[more]
sp|Q9LY16|CCU42_ARATH1.9e-2843.37Cyclin-U4-2 OS=Arabidopsis thaliana OX=3702 GN=CYCU4-2 PE=1 SV=1[more]
sp|Q7XC35|CCP41_ORYSJ4.0e-2338.82Cyclin-P4-1 OS=Oryza sativa subsp. japonica OX=39947 GN=CYCP4-1 PE=2 SV=1[more]
sp|Q9LJ45|CCU11_ARATH2.8e-1641.18Cyclin-U1-1 OS=Arabidopsis thaliana OX=3702 GN=CYCU1-1 PE=1 SV=1[more]
BLAST of Carg10180 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0KER4|A0A0A0KER4_CUCSA1.0e-4762.71Cyclin OS=Cucumis sativus OX=3659 GN=Csa_6G078670 PE=3 SV=1[more]
tr|A0A1S4E2M4|A0A1S4E2M4_CUCME2.5e-4662.57cyclin-U4-1-like OS=Cucumis melo OX=3656 GN=LOC103498997 PE=4 SV=1[more]
tr|B9SKL0|B9SKL0_RICCO7.5e-4355.07Cyclin OS=Ricinus communis OX=3988 GN=RCOM_0658420 PE=3 SV=1[more]
tr|A0A067JY35|A0A067JY35_JATCU6.4e-4253.77Cyclin OS=Jatropha curcas OX=180498 GN=JCGZ_14652 PE=3 SV=1[more]
tr|A0A2C9VTP3|A0A2C9VTP3_MANES3.2e-4153.33Cyclin OS=Manihot esculenta OX=3983 GN=MANES_05G056500 PE=3 SV=1[more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0019901protein kinase binding
Vocabulary: Biological Process
TermDefinition
GO:0000079regulation of cyclin-dependent protein serine/threonine kinase activity
Vocabulary: INTERPRO
TermDefinition
IPR012389Cyclin_P/U
IPR013922Cyclin_PHO80-like
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0000079 regulation of cyclin-dependent protein serine/threonine kinase activity
cellular_component GO:0005575 cellular_component
molecular_function GO:0019901 protein kinase binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg10180-RACarg10180-RAmRNA


InterPro
Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013922Cyclin PHO80-likePFAMPF08613Cyclincoord: 39..106
e-value: 4.4E-16
score: 59.6
IPR012389Cyclin P/UPIRSFPIRSF027110PREGcoord: 104..168
e-value: 1.7E-5
score: 22.5
coord: 1..106
e-value: 1.2E-37
score: 127.6
NoneNo IPR availableGENE3DG3DSA:1.10.472.10coord: 4..110
e-value: 5.2E-29
score: 103.5
NoneNo IPR availablePANTHERPTHR15615UNCHARACTERIZEDcoord: 106..168
NoneNo IPR availablePANTHERPTHR15615UNCHARACTERIZEDcoord: 1..104
NoneNo IPR availablePANTHERPTHR15615:SF28CYCLIN-U4-1-RELATEDcoord: 1..104
coord: 106..168

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Carg10180Cla021343Watermelon (97103) v1carwmB0218
Carg10180Cla006987Watermelon (97103) v1carwmB0221
Carg10180Csa6G078670Cucumber (Chinese Long) v2carcuB0259
Carg10180Csa3G127030Cucumber (Chinese Long) v2carcuB0257
Carg10180MELO3C006228Melon (DHL92) v3.5.1carmeB0236
Carg10180MELO3C022473Melon (DHL92) v3.5.1carmeB0231
Carg10180ClCG06G000680Watermelon (Charleston Gray)carwcgB0223
Carg10180ClCG05G002620Watermelon (Charleston Gray)carwcgB0220
Carg10180CSPI03G09920Wild cucumber (PI 183967)carcpiB0261
Carg10180CSPI06G06140Wild cucumber (PI 183967)carcpiB0263
Carg10180Cucsa.362490Cucumber (Gy14) v1carcgyB0271
Carg10180Cucsa.257270Cucumber (Gy14) v1carcgyB0269
Carg10180CmaCh14G019570Cucurbita maxima (Rimu)carcmaB0313
Carg10180CmaCh17G000560Cucurbita maxima (Rimu)carcmaB0314
Carg10180CmaCh06G011630Cucurbita maxima (Rimu)carcmaB0317
Carg10180CmoCh14G020170Cucurbita moschata (Rifu)carcmoB0319
Carg10180CmoCh06G011910Cucurbita moschata (Rifu)carcmoB0322
Carg10180CmoCh17G000560Cucurbita moschata (Rifu)carcmoB0320
Carg10180Lsi09G018760Bottle gourd (USVL1VR-Ls)carlsiB203
Carg10180Lsi05G019220Bottle gourd (USVL1VR-Ls)carlsiB206
Carg10180Cp4.1LG08g02140Cucurbita pepo (Zucchini)carcpeB0329
Carg10180Cp4.1LG03g17410Cucurbita pepo (Zucchini)carcpeB0327
Carg10180Cp4.1LG12g00500Cucurbita pepo (Zucchini)carcpeB0322
Carg10180CsGy3G010030Cucumber (Gy14) v2carcgybB0245
Carg10180CsGy6G006140Cucumber (Gy14) v2carcgybB0248
Carg10180MELO3C022473.2Melon (DHL92) v3.6.1carmedB0238
Carg10180CsaV3_6G006470Cucumber (Chinese Long) v3carcucB0263
Carg10180CsaV3_3G010070Cucumber (Chinese Long) v3carcucB0260
Carg10180Cla97C05G083140Watermelon (97103) v2carwmbB0229
Carg10180Cla97C06G109920Watermelon (97103) v2carwmbB0232
Carg10180Bhi12G002253Wax gourdcarwgoB0279
Carg10180Bhi01G000076Wax gourdcarwgoB0285
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
Carg10180Carg14861Silver-seed gourdcarcarB261
Carg10180Carg06354Silver-seed gourdcarcarB266
The following block(s) are covering this gene:
GeneOrganismBlock
Carg10180Silver-seed gourdcarcarB267
Carg10180Silver-seed gourdcarcarB269
Carg10180Cucurbita maxima (Rimu)carcmaB0319
Carg10180Cucurbita maxima (Rimu)carcmaB0321
Carg10180Cucurbita moschata (Rifu)carcmoB0324
Carg10180Cucurbita moschata (Rifu)carcmoB0326
Carg10180Cucurbita pepo (Zucchini)carcpeB0323
Carg10180Cucurbita pepo (Zucchini)carcpeB0325
Carg10180Wax gourdcarwgoB0282