Carg09933 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg09933
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	U11/u12 small nuclear ribonucleoprotein 25 kDa protein
Location	Cucurbita_argyrosperma_scaffold_030 : 559151 .. 562798 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AAATAATCGCTTCCCGCTTTCACAGCTAAACCAACGAACAAACCAGAATGTCCCTTCGCAATTTTTCGAAACCCTAGACCTCACTGAAAATTGCATTTGGATTTCCACGCTCTGATCTTCAAAAATCAATACCTTCTTCGATTCGTAACTCCAATTCTCCATTATTCGTCTTTCTAGTGTCTGAAATTTTGAGTTCAGGTCGATTCATGTCTCGTATTGAGCCCTATGTTTCGGATTCTTGCTCGGAGCAACAGTTTTCGCTACAAGAGGCTACCGCCGCAGCTTCTCCTCCTCCTCCTCTCCGTGCTAAAATTGGACGGCTCTTCTTTCGGTAATTTTTCCACTTTTTGTATTGGTTCATATATAACTCTGTTGCAAATTTTGTTGTGTTAGACGAACGTTTTTGTGAGCGATCTGATACGAGTATAGTCGGGAATGTTTTGATGTTGATGTGAGAATGCTATTAAAAAACGTTTGAATGTTCTGCCTTTGGACTGGATATATTGAATTGATTTGATTACCATTGGTAGCGTAGAAAGTCAGGACCTATGGTCCTAGGTGCGAGTTGCAAGGACGGCGACGGTGGCAGCAGTTAGAGACGCGGTGGAGAGTGTTTTCTGTGGAATGTCGATGAATAAAGAAGATGACAAGATTTCTTGGTAAGCTGTCGGGGGATTTGGAGTACTGAACCGCGCATATTAATCTAATATGTTGAATTGAAAATGAAAGTGTGTTCAATTGTTTATTTGGTTCAATTGCAGGCCACATGTGCGGTGTCATTTTTGCTTATGCTATAAGCATTACAAGCTGATCGACGACAAATCACGTATCAAACAGTTTGAAATCATAGATGTTGATAAGGTATTTCCTGAACTTTGTTTAGGCTATAAGCATTACAAGCTCATCCAAAAATTTCTTGTTATCCGCCCATTTTTTAGAGTTGTTTTCAAGATCCAACCAAATTTTGAAAACTTGAAAAGATAGTTCAGCTATTAAATAATTCCTTAAACTTATTTTCTGTCGGTTGTTTGTGACATTGAGTTTGGTATTGTATTTGATCGAGTAATTAACTAGTTATATATTCCCCCATGAAGCTGCATTTTGTGAACCGTGTAGCTTAATTTGTGGCAAGAATCTGTGGATTTGAGATGTCCCATCAAAGAATATATAGATAGAGCAAGGTAAGCGGGTTGAACGGCTTCTGGTATAAAGTGGTCAGAAGGTTTTGGGCGTGTGAATTATTATAAAGTGGTCAGATGGATCTTTTTCTGATGTTAAATTGGAAGTTTTGGTATAATATAAACAGTATGAATTTCATTTCATTTCTGCCACTCAAGACTGTACTTTTGTTTCTTTCAATTCAGAAATATAGTCCTTTACAAGATCGGTCTCTAAGGTACAGGAAGAATGGCAATGAAAATGCCCAAGTGATCTGAAATTGATACATTTTCTAAATCTGAAATAATGAATATCATTGCCTACCTATATGTATCGGAATGAACATCAATTACCACCAACTTCTACTTTCATCTTGGGGGTAAGCCTTCGATTACATGGTTTCTAGTATTTATGAATCTTTGAAATAATGATTGATGAAACGATTAAAGTCAGATATGATTTTTGTATAAATTTATTGTGATGAGACATATTAAAGAAATAAACATGATTAGAATCTTCATATAGTGTTCATATTCTCCATTGCTGATTGAAAGGAATGGTGATAACTTGCTAAGGTTAATATTTCCCATAGATGTTTAAGAAAGATACTGCAAATATGACACCCTAGGCACTGGAAGGTCTTGTCTACCTAAAGTTACAAGTCACTTACAAGGTAAGGCAGACCCACAAAGGAAGATCTAATTGTGTAGTAAAGCTAATATTTCGCATTTCCTCTCCTAATCAACCTCTGAAATGCTAAACATGAACATTTCTGATCACTGTTTACCTTTTATTATCAGAGAGGATTTGGAGATTGATCACCTTACATGCTGCTTTCCGATGTTCAATGGAGAAGCTCTGAAGTTTTGGGAGTAGGTTAGGCCTTCAGGTTTCTTCTTGTACCTCCCTTGTGAAGAAGATAAGCGGCAGTGAGATGTTAGGATGGCAAAGTCGTTGAGATCTTGCAACGGAGTCAGGGTCTTCACAACTTCGTCCATGGTCGGACGTAGTTTCGGGTCCCTGCTCAGGCAACTGCAAGCAAGCTGGGAGACCTTCTGCACCCCTTTAATGGAATACTTGAATTCCAAGCGGGGATCCACTATATGATATAGCTTTCTTTTATCACCTAAATATGGCCGAGCCCATGACACAAGGTTTTGCTCCCCACTCGGACGTTTCTTGTCCATGGATCTTCTCCCTGTTACAATCTCAAGAAGCACAACACCAAAGCTATAAACATCGTTCTTCGACGTCAGATGTCCTGTGATCAAATCAAGAAAAGTTGGAAGTTATGTCAGATATCAGTCATTACTTAAGATTCAATTCTCGGTTTCAACTAAAATTCCTCCACGAAGGCTCGCACAAACAATTTAGTATCGAGGGGTGTCATGTAGTTAAAACATCTTCTACGGATATCAACCTGTCATTACATATTCAGGAGCAGCATAGCCATACGTCCCAATTACCCTGGTAGAAACATGTGTTTTGTCTCCTTGAGGCCCTGCTTTCGCAAAGCCAAAATCTGAAAGCTTTGCATTGTATTCCTGTAAACAAATGTCATATGTATAATGAGATAAAGAAATTACTCGAAACATTTGGAGCATTGTCATTTGGAACCGATGGAACCGATGGAACCGACCGAATCAAGCAAGATATTGGATGTCTTAAAATCTCTATAGATAACAGGTACTGGGGCATTATGAAGAAAGGCCAATCCTTTTGCCGCTTTGAGGGCAATCTTAATCCTATTGGACCATGGAAGAGGAATAATCCCTGCACCAATCATGAATATAAGCATCTGTACCCCAACACCTTGTCTGTAACTAAGAGATAGAGATTCTTACTTCTGAAAAGATGGTTTTCCAGACTTCCACGGCTCATGAACTCATAAACAAGCAAATGTTGATCATCTTCGTTACAGTAACCTATAAGCTTCACAAGATTTGGATGGTGAAGTTGTCCAAGAAAGACAACCTCAGCCTGTAACCAAGAACATATTTTACGTTAGCACTCCCCAACAGGTCCCCTTTATAAGGTAAGTAAGCCTTCACGAACCCAAAGCAGAAAGTTCTACTAACCACCCATTCTCTATGGCCTTGAAGACCATCAAGTTTCAAGCTCTTAACAGCTACTGTAATTCCTGATCCGGGTTTTGCAGGGGCTGTCCCATTCTCTTCAATCCATCCTTTAAAGACAAATCCAAATCCACCTTCCCCAAGAATGCTATCAGGTCTAAAGTTTCCTGTTGCTGCCTTCAGCTCATGAAAAGAGAACTGAAGTAGTTTGCTTGTTGATTTGTTGTCTGATGGTGATGGATTGGCATTATCAGAGGCTAGCTCAGCTTCATTCGAGGTAGAGAGTTCTCTGTTGCTAGCATTTAAACACCGTGTTTCAGTAGCTGCAATCACAAAAGGTCAGTATCTTCTTAAGAACAATAAGCCTTCTTTTCACAGCCTACAAGCCATAGATGAACATGAGAAGACAACCAAA

mRNA sequence

AAATAATCGCTTCCCGCTTTCACAGCTAAACCAACGAACAAACCAGAATGTCCCTTCGCAATTTTTCGAAACCCTAGACCTCACTGAAAATTGCATTTGGATTTCCACGCTCTGATCTTCAAAAATCAATACCTTCTTCGATTCGTAACTCCAATTCTCCATTATTCGTCTTTCTAGTGTCTGAAATTTTGAGTTCAGGTCGATTCATGTCTCGTATTGAGCCCTATGTTTCGGATTCTTGCTCGGAGCAACAGTTTTCGCTACAAGAGGCTACCGCCGCAGCTTCTCCTCCTCCTCCTCTCCGTGCTAAAATTGGACGGCTCTTCTTTCGGACGGCGACGGTGGCAGCAGTTAGAGACGCGGTGGAGAGTGTTTTCTGTGGAATGTCGATGAATAAAGAAGATGACAAGATTTCTTGGCCACATGTGCGGTGTCATTTTTGCTTATGCTATAAGCATTACAAGCTGATCGACGACAAATCACGTATCAAACAGTTTGAAATCATAGATGTTGATAAGAGAGGATTTGGAGATTGATCACCTTACATGCTGCTTTCCGATGTTCAATGGAGAAGCTCTGAAGTTTTGGGAGTAGGTTAGGCCTTCAGGTTTCTTCTTGTACCTCCCTTGTGAAGAAGATAAGCGGCAGTGAGATGTTAGGATGGCAAAGTCGTTGAGATCTTGCAACGGAGTCAGGGTCTTCACAACTTCGTCCATGGTCGGACGTAGTTTCGGGTCCCTGCTCAGGCAACTGCAAGCAAGCTGGGAGACCTTCTGCACCCCTTTAATGGAATACTTGAATTCCAAGCGGGGATCCACTATATGATATAGCTTTCTTTTATCACCTAAATATGGCCGAGCCCATGACACAAGGTTTTGCTCCCCACTCGGACGTTTCTTGTCCATGGATCTTCTCCCTGTTACAATCTCAAGAAGCACAACACCAAAGCTATAAACATCGTTCTTCGACGTCAGATGTCCTGTGATCAAATCAAGAAAAGTTGGAAGTTATGTCAGATATCAGTCATTACTTAAGATTCAATTCTCGGTTTCAACTAAAATTCCTCCACGAAGGCTCGCACAAACAATTTAGTATCGAGGGGTGTCATGTAGTTAAAACATCTTCTACGGATATCAACCTGTCATTACATATTCAGGAGCAGCATAGCCATACGTCCCAATTACCCTGGTAGAAACATGTGTTTTGTCTCCTTGAGGCCCTGCTTTCGCAAAGCCAAAATCTGAAAGCTTTGCATTGTATTCCTGTAAACAAATGTCATATGTATAATGAGATAAAGAAATTACTCGAAACATTTGGAGCATTGTCATTTGGAACCGATGGAACCGATGGAACCGACCGAATCAAGCAAGATATTGGATGTCTTAAAATCTCTATAGATAACAGGTACTGGGGCATTATGAAGAAAGGCCAATCCTTTTGCCGCTTTGAGGGCAATCTTAATCCTATTGGACCATGGAAGAGGAATAATCCCTGCACCAATCATGAATATAAGCATCTGTACCCCAACACCTTGTCTGTAACTAAGAGATAGAGATTCTTACTTCTGAAAAGATGGTTTTCCAGACTTCCACGGCTCATGAACTCATAAACAAGCAAATGTTGATCATCTTCGTTACAGTAACCTATAAGCTTCACAAGATTTGGATGGTGAAGTTGTCCAAGAAAGACAACCTCAGCCTCCCATTCTCTATGGCCTTGAAGACCATCAAGTTTCAAGCTCTTAACAGCTACTGTAATTCCTGATCCGGGTTTTGCAGGGGCTGTCCCATTCTCTTCAATCCATCCTTTAAAGACAAATCCAAATCCACCTTCCCCAAGAATGCTATCAGGTCTAAAGTTTCCTGTTGCTGCCTTCAGCTCATGAAAAGAGAACTGAAGTAGTTTGCTTGTTGATTTGTTGTCTGATGGTGATGGATTGGCATTATCAGAGGCTAGCTCAGCTTCATTCGAGGTAGAGAGTTCTCTGTTGCTAGCATTTAAACACCGTGTTTCAGTAGCTGCAATCACAAAAGGTCAGTATCTTCTTAAGAACAATAAGCCTTCTTTTCACAGCCTACAAGCCATAGATGAACATGAGAAGACAACCAAA

Coding sequence (CDS)

ATGTCTCGTATTGAGCCCTATGTTTCGGATTCTTGCTCGGAGCAACAGTTTTCGCTACAAGAGGCTACCGCCGCAGCTTCTCCTCCTCCTCCTCTCCGTGCTAAAATTGGACGGCTCTTCTTTCGGACGGCGACGGTGGCAGCAGTTAGAGACGCGGTGGAGAGTGTTTTCTGTGGAATGTCGATGAATAAAGAAGATGACAAGATTTCTTGGCCACATGTGCGGTGTCATTTTTGCTTATGCTATAAGCATTACAAGCTGATCGACGACAAATCACGTATCAAACAGTTTGAAATCATAGATGTTGATAAGAGAGGATTTGGAGATTGA

Protein sequence

MSRIEPYVSDSCSEQQFSLQEATAAASPPPPLRAKIGRLFFRTATVAAVRDAVESVFCGMSMNKEDDKISWPHVRCHFCLCYKHYKLIDDKSRIKQFEIIDVDKRGFGD

Homology

[Close]

BLAST of Carg09933 vs. NCBI nr
Match: XP_008443964.1 (PREDICTED: U11/U12 small nuclear ribonucleoprotein 25 kDa protein-like isoform X2 [Cucumis melo])

HSP 1 Score: 109.4 bits (272), Expect = 7.9e-21
Identity = 65/120 (54.17%), Postives = 74/120 (61.67%), Query Frame = 0


Query: 1   MSRIEPYVSDSCS-EQQFSLQEATAAAS----PXPPLRAKIGRL--------FFRTATVA 60
           MS+IEP V DSC    +F       +      P   LR  + +L          RTATVA
Sbjct: 4   MSQIEPIVPDSCCISPRFHTNSFRRSLRYNRLPPQLLRLSVLKLDGSSFEVQVERTATVA 63

Query: 61  AVRDAVESVFCGMSMNKEDDKISWPHVRCHFCLCYKHYKLIDDKSRIKQFEIIDVDKRGF 108
           AVRDAVESVFC MSMNKED  ISWPHV  HFCLCYKH+KL+DDKSRI+ F I D D+  F
Sbjct: 64  AVRDAVESVFCEMSMNKEDFNISWPHVWGHFCLCYKHFKLMDDKSRIQHFGIRDGDQLHF 123

[Close]

BLAST of Carg09933 vs. NCBI nr
Match: XP_008443963.1 (PREDICTED: U11/U12 small nuclear ribonucleoprotein 25 kDa protein-like isoform X1 [Cucumis melo])

HSP 1 Score: 108.6 bits (270), Expect = 1.3e-20
Identity = 64/117 (54.70%), Postives = 73/117 (62.39%), Query Frame = 0


Query: 1   MSRIEPYVSDSCS-EQQFSLQEATAAAS----PXPPLRAKIGRL--------FFRTATVA 60
           MS+IEP V DSC    +F       +      P   LR  + +L          RTATVA
Sbjct: 4   MSQIEPIVPDSCCISPRFHTNSFRRSLRYNRLPPQLLRLSVLKLDGSSFEVQVERTATVA 63

Query: 61  AVRDAVESVFCGMSMNKEDDKISWPHVRCHFCLCYKHYKLIDDKSRIKQFEIIDVDK 105
           AVRDAVESVFC MSMNKED  ISWPHV  HFCLCYKH+KL+DDKSRI+ F I D D+
Sbjct: 64  AVRDAVESVFCEMSMNKEDFNISWPHVWGHFCLCYKHFKLMDDKSRIQHFGIRDGDQ 120

[Close]

BLAST of Carg09933 vs. NCBI nr
Match: XP_011655436.1 (PREDICTED: U11/U12 small nuclear ribonucleoprotein 25 kDa protein-like [Cucumis sativus] >KGN65130.1 hypothetical protein Csa_1G231020 [Cucumis sativus])

HSP 1 Score: 108.6 bits (270), Expect = 1.3e-20
Identity = 65/120 (54.17%), Postives = 73/120 (60.83%), Query Frame = 0


Query: 1   MSRIEPYVSDSCS-EQQFSLQEATAAAS----PXPPLRAKIGRL--------FFRTATVA 60
           MS IEP V DSC    +F       +      P   LR  + +L          RTATVA
Sbjct: 1   MSHIEPIVPDSCCISPRFHSNSFRRSLRYNRLPPQLLRLSVLKLDGSSFEVQVERTATVA 60

Query: 61  AVRDAVESVFCGMSMNKEDDKISWPHVRCHFCLCYKHYKLIDDKSRIKQFEIIDVDKRGF 108
           AVRDAVESVFC MSMNKED  ISWPHV  HFCLCYKH+KL+DDKSRI+ F I D D+  F
Sbjct: 61  AVRDAVESVFCEMSMNKEDFNISWPHVWGHFCLCYKHFKLMDDKSRIQHFGIRDGDQLHF 120

[Close]

BLAST of Carg09933 vs. NCBI nr
Match: XP_023531556.1 (U11/U12 small nuclear ribonucleoprotein 25 kDa protein-like isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 106.3 bits (264), Expect = 6.7e-20
Identity = 59/116 (50.86%), Postives = 71/116 (61.21%), Query Frame = 0


Query: 1   MSRIEPYVSDSCSEQQFSLQEATAAASPXPPLRAKIGRL-------------FFRTATVA 60
           MSRIEP + DSC         +   +     L +++  L               R A+VA
Sbjct: 21  MSRIEPNIPDSCCISPRFRSNSFRRSLRYQRLPSRLLHLSVLKLDGSSFEVQVARKASVA 80

Query: 61  AVRDAVESVFCGMSMNKEDDKISWPHVRCHFCLCYKHYKLIDDKSRIKQFEIIDVD 104
            +R+AVESVFCGMSMN+ED KISWPHV  HFCLCYKHYKLID+KSRIK+F I D D
Sbjct: 81  KLREAVESVFCGMSMNREDVKISWPHVWSHFCLCYKHYKLIDEKSRIKRFGIRDGD 136

[Close]

BLAST of Carg09933 vs. NCBI nr
Match: XP_023531557.1 (U11/U12 small nuclear ribonucleoprotein 25 kDa protein-like isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 106.3 bits (264), Expect = 6.7e-20
Identity = 59/116 (50.86%), Postives = 71/116 (61.21%), Query Frame = 0


Query: 1   MSRIEPYVSDSCSEQQFSLQEATAAASPXPPLRAKIGRL-------------FFRTATVA 60
           MSRIEP + DSC         +   +     L +++  L               R A+VA
Sbjct: 1   MSRIEPNIPDSCCISPRFRSNSFRRSLRYQRLPSRLLHLSVLKLDGSSFEVQVARKASVA 60

Query: 61  AVRDAVESVFCGMSMNKEDDKISWPHVRCHFCLCYKHYKLIDDKSRIKQFEIIDVD 104
            +R+AVESVFCGMSMN+ED KISWPHV  HFCLCYKHYKLID+KSRIK+F I D D
Sbjct: 61  KLREAVESVFCGMSMNREDVKISWPHVWSHFCLCYKHYKLIDEKSRIKRFGIRDGD 116

[Close]

BLAST of Carg09933 vs. TAIR10
Match: AT1G80060.1 (Ubiquitin-like superfamily protein)

HSP 1 Score: 51.2 bits (121), Expect = 4.6e-07
Identity = 26/66 (39.39%), Postives = 40/66 (60.61%), Query Frame = 0


Query: 42  RTATVAAVRDAVESVFCGMSMNKEDDKISWPHVRCHFCLCYKHYKLIDDKSRIKQFEIID 101
           +  +VA ++ AVE VF  +S  +    ISW HV  HFCLCY+  +L++DK+ I+   + D
Sbjct: 71  KDCSVAELKRAVEQVFT-ISPLEGHGMISWSHVWGHFCLCYRDQRLVNDKTSIRYLGLND 130

Query: 102 VDKRGF 108
            D+  F
Sbjct: 131 GDQLHF 135

[Close]

BLAST of Carg09933 vs. TAIR10
Match: AT5G25340.1 (Ubiquitin-like superfamily protein)

HSP 1 Score: 47.8 bits (112), Expect = 5.1e-06
Identity = 30/88 (34.09%), Postives = 43/88 (48.86%), Query Frame = 0


Query: 28  PXPPLRAKIGRL--------FFRTATVAAVRDAVESVFCGMSMNKEDDKISWPHVRCHFC 87
           P  P+R  + +L           +ATV  ++ A+E+ F  +   K   KISW HV  HFC
Sbjct: 15  PNEPIRLSVLKLDGSSFDVYVLTSATVGDLKVAIETAFSHVP-KKGPSKISWSHVWGHFC 74

Query: 88  LCYKHYKLIDDKSRIKQFEIIDVDKRGF 108
           LC+   KLI D   I  + + D D+  F
Sbjct: 75  LCFGGQKLITDTDCIGNYGMKDGDEVRF 101

[Close]

BLAST of Carg09933 vs. TrEMBL
Match: tr|A0A1S3BA12|A0A1S3BA12_CUCME (U11/U12 small nuclear ribonucleoprotein 25 kDa protein-like isoform X2 OS=Cucumis melo OX=3656 GN=LOC103487425 PE=4 SV=1)

HSP 1 Score: 109.4 bits (272), Expect = 5.2e-21
Identity = 65/120 (54.17%), Postives = 74/120 (61.67%), Query Frame = 0


Query: 1   MSRIEPYVSDSCS-EQQFSLQEATAAAS----PXPPLRAKIGRL--------FFRTATVA 60
           MS+IEP V DSC    +F       +      P   LR  + +L          RTATVA
Sbjct: 4   MSQIEPIVPDSCCISPRFHTNSFRRSLRYNRLPPQLLRLSVLKLDGSSFEVQVERTATVA 63

Query: 61  AVRDAVESVFCGMSMNKEDDKISWPHVRCHFCLCYKHYKLIDDKSRIKQFEIIDVDKRGF 108
           AVRDAVESVFC MSMNKED  ISWPHV  HFCLCYKH+KL+DDKSRI+ F I D D+  F
Sbjct: 64  AVRDAVESVFCEMSMNKEDFNISWPHVWGHFCLCYKHFKLMDDKSRIQHFGIRDGDQLHF 123

[Close]

BLAST of Carg09933 vs. TrEMBL
Match: tr|A0A1S3B9C0|A0A1S3B9C0_CUCME (U11/U12 small nuclear ribonucleoprotein 25 kDa protein-like isoform X1 OS=Cucumis melo OX=3656 GN=LOC103487425 PE=4 SV=1)

HSP 1 Score: 108.6 bits (270), Expect = 8.9e-21
Identity = 64/117 (54.70%), Postives = 73/117 (62.39%), Query Frame = 0


Query: 1   MSRIEPYVSDSCS-EQQFSLQEATAAAS----PXPPLRAKIGRL--------FFRTATVA 60
           MS+IEP V DSC    +F       +      P   LR  + +L          RTATVA
Sbjct: 4   MSQIEPIVPDSCCISPRFHTNSFRRSLRYNRLPPQLLRLSVLKLDGSSFEVQVERTATVA 63

Query: 61  AVRDAVESVFCGMSMNKEDDKISWPHVRCHFCLCYKHYKLIDDKSRIKQFEIIDVDK 105
           AVRDAVESVFC MSMNKED  ISWPHV  HFCLCYKH+KL+DDKSRI+ F I D D+
Sbjct: 64  AVRDAVESVFCEMSMNKEDFNISWPHVWGHFCLCYKHFKLMDDKSRIQHFGIRDGDQ 120

[Close]

BLAST of Carg09933 vs. TrEMBL
Match: tr|A0A0A0LT94|A0A0A0LT94_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G231020 PE=4 SV=1)

HSP 1 Score: 108.6 bits (270), Expect = 8.9e-21
Identity = 65/120 (54.17%), Postives = 73/120 (60.83%), Query Frame = 0


Query: 1   MSRIEPYVSDSCS-EQQFSLQEATAAAS----PXPPLRAKIGRL--------FFRTATVA 60
           MS IEP V DSC    +F       +      P   LR  + +L          RTATVA
Sbjct: 1   MSHIEPIVPDSCCISPRFHSNSFRRSLRYNRLPPQLLRLSVLKLDGSSFEVQVERTATVA 60

Query: 61  AVRDAVESVFCGMSMNKEDDKISWPHVRCHFCLCYKHYKLIDDKSRIKQFEIIDVDKRGF 108
           AVRDAVESVFC MSMNKED  ISWPHV  HFCLCYKH+KL+DDKSRI+ F I D D+  F
Sbjct: 61  AVRDAVESVFCEMSMNKEDFNISWPHVWGHFCLCYKHFKLMDDKSRIQHFGIRDGDQLHF 120

[Close]

BLAST of Carg09933 vs. TrEMBL
Match: tr|A0A1Q3D072|A0A1Q3D072_CEPFO (ATP-synt_B domain-containing protein (Fragment) OS=Cephalotus follicularis OX=3775 GN=CFOL_v3_29137 PE=3 SV=1)

HSP 1 Score: 66.2 bits (160), Expect = 5.1e-08
Identity = 39/99 (39.39%), Postives = 52/99 (52.53%), Query Frame = 0


Query: 17  FSLQEATAAASPXPPLRAKI----GRLF----FRTATVAAVRDAVESVFCGMSMNKEDDK 76
           FS Q  +    P  P++  +    G LF     + AT+A ++ AVE VFC M   K   K
Sbjct: 35  FSRQTFSYTKLPEEPIKLSVLKLDGSLFDIQVMQAATIADLKQAVEDVFCHMP-KKGPGK 94

Query: 77  ISWPHVRCHFCLCYKHYKLIDDKSRIKQFEIIDVDKRGF 108
           ISWPHV  HFCLCY   KL+ +   I+ + I D D+  F
Sbjct: 95  ISWPHVWGHFCLCYDRQKLVSETECIRNYGIKDGDQLQF 132

[Close]

BLAST of Carg09933 vs. TrEMBL
Match: tr|A0A1U7Z459|A0A1U7Z459_NELNU (uncharacterized protein LOC104586122 OS=Nelumbo nucifera OX=4432 GN=LOC104586122 PE=4 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 1.1e-07
Identity = 31/66 (46.97%), Postives = 44/66 (66.67%), Query Frame = 0


Query: 42  RTATVAAVRDAVESVFCGMSMNKEDDKISWPHVRCHFCLCYKHYKLIDDKSRIKQFEIID 101
           +  +VA ++ AVE VF   S+ + +D ISW HV  HFCLC+K  KLI+DK+R++ F I D
Sbjct: 66  KMGSVAELKQAVEDVF-STSIKEGEDNISWSHVWSHFCLCFKDQKLINDKARLRNFGIKD 125

Query: 102 VDKRGF 108
            D+  F
Sbjct: 126 GDQLCF 130

The following BLAST results are available for this feature:

BLAST of Carg09933 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008443964.1	7.9e-21	54.17	PREDICTED: U11/U12 small nuclear ribonucleoprotein 25 kDa protein-like isoform X...	[more]
XP_008443963.1	1.3e-20	54.70	PREDICTED: U11/U12 small nuclear ribonucleoprotein 25 kDa protein-like isoform X...	[more]
XP_011655436.1	1.3e-20	54.17	PREDICTED: U11/U12 small nuclear ribonucleoprotein 25 kDa protein-like [Cucumis ...	[more]
XP_023531556.1	6.7e-20	50.86	U11/U12 small nuclear ribonucleoprotein 25 kDa protein-like isoform X1 [Cucurbit...	[more]
XP_023531557.1	6.7e-20	50.86	U11/U12 small nuclear ribonucleoprotein 25 kDa protein-like isoform X2 [Cucurbit...	[more]

BLAST of Carg09933 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G80060.1	4.6e-07	39.39	Ubiquitin-like superfamily protein	[more]
AT5G25340.1	5.1e-06	34.09	Ubiquitin-like superfamily protein	[more]

BLAST of Carg09933 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Carg09933 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3BA12\|A0A1S3BA12_CUCME	5.2e-21	54.17	U11/U12 small nuclear ribonucleoprotein 25 kDa protein-like isoform X2 OS=Cucumi...	[more]
tr\|A0A1S3B9C0\|A0A1S3B9C0_CUCME	8.9e-21	54.70	U11/U12 small nuclear ribonucleoprotein 25 kDa protein-like isoform X1 OS=Cucumi...	[more]
tr\|A0A0A0LT94\|A0A0A0LT94_CUCSA	8.9e-21	54.17	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G231020 PE=4 SV=1	[more]
tr\|A0A1Q3D072\|A0A1Q3D072_CEPFO	5.1e-08	39.39	ATP-synt_B domain-containing protein (Fragment) OS=Cephalotus follicularis OX=37...	[more]
tr\|A0A1U7Z459\|A0A1U7Z459_NELNU	1.1e-07	46.97	uncharacterized protein LOC104586122 OS=Nelumbo nucifera OX=4432 GN=LOC104586122...	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg09933-RA	Carg09933-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	G3DSA:3.10.20.90		coord: 39..108 e-value: 3.4E-13 score: 51.2
None	No IPR available	PANTHER	PTHR14942:SF2	SUBFAMILY NOT NAMED	coord: 42..104
None	No IPR available	PANTHER	PTHR14942	FAMILY NOT NAMED	coord: 42..104

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg09933	Cla012213	Watermelon (97103) v1	carwmB0126
Carg09933	Csa1G231020	Cucumber (Chinese Long) v2	carcuB0137
Carg09933	ClCG06G011440	Watermelon (Charleston Gray)	carwcgB0125
Carg09933	CSPI01G16760	Wild cucumber (PI 183967)	carcpiB0141
Carg09933	Cucsa.036170	Cucumber (Gy14) v1	carcgyB0149
Carg09933	CmaCh11G005300	Cucurbita maxima (Rimu)	carcmaB0169
Carg09933	CmaCh10G005330	Cucurbita maxima (Rimu)	carcmaB0166
Carg09933	CmoCh11G005270	Cucurbita moschata (Rifu)	carcmoB0175
Carg09933	CmoCh10G005680	Cucurbita moschata (Rifu)	carcmoB0172
Carg09933	Lsi06G009950	Bottle gourd (USVL1VR-Ls)	carlsiB115
Carg09933	Cp4.1LG04g09350	Cucurbita pepo (Zucchini)	carcpeB0186
Carg09933	CsGy1G016990	Cucumber (Gy14) v2	carcgybB0132
Carg09933	MELO3C029652.2	Melon (DHL92) v3.6.1	carmedB0135
Carg09933	CsaV3_1G026670	Cucumber (Chinese Long) v3	carcucB0142
Carg09933	Cla97C06G120590	Watermelon (97103) v2	carwmbB0133
Carg09933	Bhi02G000798	Wax gourd	carwgoB0165

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Carg09933	Carg12117	Silver-seed gourd	carcarB041

The following block(s) are covering this gene:


Gene	Organism	Block
Carg09933	Silver-seed gourd	carcarB149
Carg09933	Silver-seed gourd	carcarB152
Carg09933	Silver-seed gourd	carcarB154
Carg09933	Cucumber (Gy14) v2	carcgybB0137
Carg09933	Cucumber (Gy14) v1	carcgyB0154
Carg09933	Cucurbita maxima (Rimu)	carcmaB0165
Carg09933	Cucurbita maxima (Rimu)	carcmaB0171
Carg09933	Cucurbita moschata (Rifu)	carcmoB0179
Carg09933	Cucurbita pepo (Zucchini)	carcpeB0181
Carg09933	Cucurbita pepo (Zucchini)	carcpeB0185
Carg09933	Cucurbita pepo (Zucchini)	carcpeB0189
Carg09933	Wild cucumber (PI 183967)	carcpiB0138
Carg09933	Wild cucumber (PI 183967)	carcpiB0143
Carg09933	Cucumber (Chinese Long) v3	carcucB0147
Carg09933	Bottle gourd (USVL1VR-Ls)	carlsiB111
Carg09933	Melon (DHL92) v3.5.1	carmeB0131
Carg09933	Melon (DHL92) v3.5.1	carmeB0133
Carg09933	Melon (DHL92) v3.6.1	carmedB0137
Carg09933	Watermelon (Charleston Gray)	carwcgB0124
Carg09933	Watermelon (97103) v1	carwmB0125
Carg09933	Watermelon (97103) v2	carwmbB0131
Carg09933	Watermelon (97103) v2	carwmbB0132
Carg09933	Watermelon (97103) v2	carwmbB0136